CANDIDATE ID: 858

CANDIDATE ID: 858

NUMBER OF GENES: 4
AVERAGE SCORE:    9.9944850e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    5.0000000e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7516 (scpB) (b2919)
   Products of gene:
     - G7516-MONOMER (ScpB)
     - CPLX0-254 (methylmalonyl-CoA decarboxylase)
       Reactions:
        (R)-methylmalonyl-CoA + H+  ->  propanoyl-CoA + CO2
         In pathways
         PWY0-43 (conversion of succinate to propionate)

- G6714 (paaF) (b1393)
   Products of gene:
     - G6714-MONOMER (predicted 2,3-dehydroadipyl-CoA hydratase)
       Reactions:
        2,3-dehydroadipyl-CoA + H2O  =  3-hydroxyadipyl-CoA
         In pathways
         PWY-6071 (superpathway of phenylethylamine degradation)
         PWY0-321 (phenylacetate degradation I (aerobic))

- EG11557 (caiD) (b0036)
   Products of gene:
     - CARNRACE-MONOMER (crotonobetainyl-CoA hydratase)
       Reactions:
        L-carnitinyl-CoA  ->  crotonobetainyl-CoA + H2O
         In pathways
         CARNMET-PWY (carnitine degradation I)

- EG11368 (menB) (b2262)
   Products of gene:
     - NAPHTHOATE-SYN-MONOMER (MenB)
     - CPLX0-7882 (1,4-dihydroxy-2-naphthoyl-CoA synthase)
       Reactions:
        o-succinylbenzoyl-CoA + H+  ->  1,4-dihydroxy-2-naphthoyl-CoA + H2O
         In pathways
         PWY-5850 (PWY-5850)
         PWY-5840 (PWY-5840)
         PWY-5845 (PWY-5845)
         PWY-5860 (PWY-5860)
         PWY-5862 (PWY-5862)
         PWY-5838 (superpathway of menaquinone-8 biosynthesis I)
         PWY-5896 (PWY-5896)
         PWY-5897 (PWY-5897)
         PWY-5898 (PWY-5898)
         PWY-5899 (PWY-5899)
         ALL-CHORISMATE-PWY (superpathway of chorismate)
         PWY-5861 (PWY-5861)
         PWY-5863 (PWY-5863)
         PWY-5837 (1,4-dihydroxy-2-naphthoate biosynthesis I)
         PWY-5791 (PWY-5791)



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ORGANISMS CONTAINING AT LEAST 3 GENES FROM THE GROUP:

Total number of orgs: 241
Effective number of orgs (counting one per cluster within 468 clusters): 172

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A4
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110184
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103314
XCAM487884 Xanthomonas campestris pv. paulliniae3
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-103
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80043
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339133
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3064
XAUT78245 ncbi Xanthobacter autotrophicus Py23
VVUL216895 ncbi Vibrio vulnificus CMCP63
VVUL196600 ncbi Vibrio vulnificus YJ0163
VEIS391735 ncbi Verminephrobacter eiseniae EF01-24
TTHE300852 ncbi Thermus thermophilus HB83
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB44
TROS309801 ncbi Thermomicrobium roseum DSM 51594
TFUS269800 ncbi Thermobifida fusca YX4
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen4
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT23
STOK273063 ncbi Sulfolobus tokodaii 74
STHE292459 ncbi Symbiobacterium thermophilum IAM 148634
SSP644076 Silicibacter sp. TrichCH4B3
SSP292414 ncbi Ruegeria sp. TM10403
SSON300269 ncbi Shigella sonnei Ss0463
SSOL273057 ncbi Sulfolobus solfataricus P23
SSED425104 ncbi Shewanella sediminis HAW-EB34
SPEA398579 ncbi Shewanella pealeana ATCC 7003454
SMEL266834 ncbi Sinorhizobium meliloti 10213
SMED366394 ncbi Sinorhizobium medicae WSM4193
SLOI323850 ncbi Shewanella loihica PV-44
SHIGELLA ncbi Shigella flexneri 2a str. 2457T3
SHAL458817 ncbi Shewanella halifaxensis HAW-EB44
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB3
SFLE373384 ncbi Shigella flexneri 5 str. 84013
SFLE198214 ncbi Shigella flexneri 2a str. 3013
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23384
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4763
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B673
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91503
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT183
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty23
SAVE227882 ncbi Streptomyces avermitilis MA-46804
SARE391037 ncbi Salinispora arenicola CNS-2053
SALA317655 ncbi Sphingopyxis alaskensis RB22563
SACI56780 ncbi Syntrophus aciditrophicus SB3
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6394
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99414
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170253
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170294
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.14
RSP357808 ncbi Roseiflexus sp. RS-14
RSP101510 ncbi Rhodococcus jostii RHA14
RSOL267608 ncbi Ralstonia solanacearum GMI10004
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332093
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111704
RPOM246200 ncbi Ruegeria pomeroyi DSS-33
RPAL316058 ncbi Rhodopseudomonas palustris HaA23
RPAL316057 ncbi Rhodopseudomonas palustris BisB54
RPAL316056 ncbi Rhodopseudomonas palustris BisB184
RPAL316055 ncbi Rhodopseudomonas palustris BisA534
RPAL258594 ncbi Rhodopseudomonas palustris CGA0094
RMET266264 ncbi Ralstonia metallidurans CH344
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38414
RFER338969 ncbi Rhodoferax ferrireducens T1183
REUT381666 ncbi Ralstonia eutropha H164
REUT264198 ncbi Ralstonia eutropha JMP1344
RETL347834 ncbi Rhizobium etli CFN 423
RDEN375451 ncbi Roseobacter denitrificans OCh 1143
RCAS383372 ncbi Roseiflexus castenholzii DSM 139414
PTHE370438 ncbi Pelotomaculum thermopropionicum SI4
PSTU379731 ncbi Pseudomonas stutzeri A15014
PSP56811 Psychrobacter sp.3
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-14
PSP296591 ncbi Polaromonas sp. JS6664
PPUT76869 ncbi Pseudomonas putida GB-13
PPUT351746 ncbi Pseudomonas putida F13
PPUT160488 ncbi Pseudomonas putida KT24403
PNAP365044 ncbi Polaromonas naphthalenivorans CJ24
PING357804 ncbi Psychromonas ingrahamii 373
PGIN242619 ncbi Porphyromonas gingivalis W833
PFLU220664 ncbi Pseudomonas fluorescens Pf-53
PFLU216595 ncbi Pseudomonas fluorescens SBW253
PFLU205922 ncbi Pseudomonas fluorescens Pf0-13
PENT384676 ncbi Pseudomonas entomophila L483
PAER208964 ncbi Pseudomonas aeruginosa PAO14
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA144
PAER178306 ncbi Pyrobaculum aerophilum IM23
OIHE221109 ncbi Oceanobacillus iheyensis HTE8314
OANT439375 ncbi Ochrobactrum anthropi ATCC 491883
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2553
NSP35761 Nocardioides sp.3
NPHA348780 ncbi Natronomonas pharaonis DSM 21603
NFAR247156 ncbi Nocardia farcinica IFM 101524
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124443
MXAN246197 ncbi Myxococcus xanthus DK 16224
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-14
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra3
MTUB336982 ncbi Mycobacterium tuberculosis F113
MTBRV ncbi Mycobacterium tuberculosis H37Rv3
MTBCDC ncbi Mycobacterium tuberculosis CDC15513
MSP266779 ncbi Chelativorans sp. BNC14
MSP189918 ncbi Mycobacterium sp. KMS4
MSP164757 ncbi Mycobacterium sp. JLS4
MSP164756 ncbi Mycobacterium sp. MCS4
MSME246196 ncbi Mycobacterium smegmatis MC2 1554
MSED399549 ncbi Metallosphaera sedula DSM 53484
MMAG342108 ncbi Magnetospirillum magneticum AMB-14
MLOT266835 ncbi Mesorhizobium loti MAFF3030994
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK3
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P23
MBOV233413 ncbi Mycobacterium bovis AF2122/973
MAVI243243 ncbi Mycobacterium avium 1043
MABS561007 ncbi Mycobacterium abscessus ATCC 199774
LSPH444177 ncbi Lysinibacillus sphaericus C3-414
LCHO395495 ncbi Leptothrix cholodnii SP-64
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785783
JSP375286 ncbi Janthinobacterium sp. Marseille3
JSP290400 ncbi Jannaschia sp. CCS14
HWAL362976 ncbi Haloquadratum walsbyi DSM 167903
HNEP81032 Hyphomonas neptunium4
HMOD498761 ncbi Heliobacterium modesticaldum Ice14
HCHE349521 ncbi Hahella chejuensis KCTC 23963
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237793
HARS204773 ncbi Herminiimonas arsenicoxydans3
GURA351605 ncbi Geobacter uraniireducens Rf44
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-24
GSUL243231 ncbi Geobacter sulfurreducens PCA4
GMET269799 ncbi Geobacter metallireducens GS-154
GKAU235909 ncbi Geobacillus kaustophilus HTA4264
GFOR411154 ncbi Gramella forsetii KT08034
FSP1855 Frankia sp. EAN1pec3
FJOH376686 ncbi Flavobacterium johnsoniae UW1014
ELIT314225 ncbi Erythrobacter litoralis HTCC25943
EFER585054 ncbi Escherichia fergusonii ATCC 354694
ECOO157 ncbi Escherichia coli O157:H7 EDL9333
ECOL83334 Escherichia coli O157:H73
ECOL585397 ncbi Escherichia coli ED1a3
ECOL585057 ncbi Escherichia coli IAI393
ECOL585056 ncbi Escherichia coli UMN0263
ECOL585055 ncbi Escherichia coli 559894
ECOL585035 ncbi Escherichia coli S883
ECOL585034 ncbi Escherichia coli IAI14
ECOL481805 ncbi Escherichia coli ATCC 87394
ECOL469008 ncbi Escherichia coli BL21(DE3)3
ECOL439855 ncbi Escherichia coli SMS-3-53
ECOL413997 ncbi Escherichia coli B str. REL6063
ECOL409438 ncbi Escherichia coli SE114
ECOL405955 ncbi Escherichia coli APEC O13
ECOL364106 ncbi Escherichia coli UTI893
ECOL362663 ncbi Escherichia coli 5363
ECOL331111 ncbi Escherichia coli E24377A4
ECOL316407 ncbi Escherichia coli K-12 substr. W31104
ECOL199310 ncbi Escherichia coli CFT0733
DSHI398580 ncbi Dinoroseobacter shibae DFL 123
DRED349161 ncbi Desulfotomaculum reducens MI-14
DRAD243230 ncbi Deinococcus radiodurans R14
DHAF138119 ncbi Desulfitobacterium hafniense Y514
DGEO319795 ncbi Deinococcus geothermalis DSM 113004
DARO159087 ncbi Dechloromonas aromatica RCB3
CTET212717 ncbi Clostridium tetani E884
CSP78 Caulobacter sp.4
CSP501479 Citreicella sp. SE453
CPER289380 ncbi Clostridium perfringens SM1014
CPER195103 ncbi Clostridium perfringens ATCC 131244
CPER195102 ncbi Clostridium perfringens 134
CNOV386415 ncbi Clostridium novyi NT4
CMAQ397948 ncbi Caldivirga maquilingensis IC-1674
CKLU431943 ncbi Clostridium kluyveri DSM 5554
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29014
CEFF196164 ncbi Corynebacterium efficiens YS-3144
CDIF272563 ncbi Clostridium difficile 6304
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto3
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6573
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B4
CBOT498213 ncbi Clostridium botulinum B1 str. Okra3
CBOT441772 ncbi Clostridium botulinum F str. Langeland3
CBOT441771 ncbi Clostridium botulinum A str. Hall3
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193973
CBOT36826 Clostridium botulinum A3
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80524
CAULO ncbi Caulobacter crescentus CB154
CACE272562 ncbi Clostridium acetobutylicum ATCC 8244
BXEN266265 ncbi Burkholderia xenovorans LB4004
BWEI315730 ncbi Bacillus weihenstephanensis KBAB44
BVIE269482 ncbi Burkholderia vietnamiensis G44
BTHU412694 ncbi Bacillus thuringiensis Al Hakam4
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-274
BTHA271848 ncbi Burkholderia thailandensis E2644
BSUI470137 ncbi Brucella suis ATCC 234453
BSUI204722 ncbi Brucella suis 13303
BSUB ncbi Bacillus subtilis subtilis 1683
BSP376 Bradyrhizobium sp.3
BSP36773 Burkholderia sp.3
BPUM315750 ncbi Bacillus pumilus SAFR-0324
BPSE320373 ncbi Burkholderia pseudomallei 6684
BPSE320372 ncbi Burkholderia pseudomallei 1710b4
BPSE272560 ncbi Burkholderia pseudomallei K962434
BPET94624 Bordetella petrii4
BPER257313 ncbi Bordetella pertussis Tohama I4
BPAR257311 ncbi Bordetella parapertussis 128224
BOVI236 Brucella ovis3
BMEL359391 ncbi Brucella melitensis biovar Abortus 23083
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M4
BMAL320389 ncbi Burkholderia mallei NCTC 102474
BMAL320388 ncbi Burkholderia mallei SAVP14
BMAL243160 ncbi Burkholderia mallei ATCC 233444
BLIC279010 ncbi Bacillus licheniformis ATCC 145803
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1104
BHAL272558 ncbi Bacillus halodurans C-1254
BCLA66692 ncbi Bacillus clausii KSM-K164
BCER572264 ncbi Bacillus cereus 03BB1024
BCER405917 Bacillus cereus W4
BCER315749 ncbi Bacillus cytotoxicus NVH 391-984
BCER288681 ncbi Bacillus cereus E33L4
BCER226900 ncbi Bacillus cereus ATCC 145794
BCEN331272 ncbi Burkholderia cenocepacia HI24244
BCEN331271 ncbi Burkholderia cenocepacia AU 10544
BCAN483179 ncbi Brucella canis ATCC 233653
BBRO257310 ncbi Bordetella bronchiseptica RB504
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1004
BANT592021 ncbi Bacillus anthracis A02484
BANT568206 ncbi Bacillus anthracis CDC 6844
BANT261594 ncbi Bacillus anthracis Ames Ancestor4
BANT260799 ncbi Bacillus anthracis Sterne4
BAMY326423 ncbi Bacillus amyloliquefaciens FZB423
BAMB398577 ncbi Burkholderia ambifaria MC40-63
BAMB339670 ncbi Burkholderia ambifaria AMMD3
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9413
ASP76114 ncbi Aromatoleum aromaticum EbN14
ASP62977 ncbi Acinetobacter sp. ADP14
ASP62928 ncbi Azoarcus sp. BH723
ASP232721 ncbi Acidovorax sp. JS424
ASP1667 Arthrobacter sp.4
AORE350688 ncbi Alkaliphilus oremlandii OhILAs4
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43044
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C4
ACRY349163 ncbi Acidiphilium cryptum JF-54
ACAU438753 ncbi Azorhizobium caulinodans ORS 5714
ABAU360910 ncbi Bordetella avium 197N4
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3453
AAVE397945 ncbi Acidovorax citrulli AAC00-14
AAUR290340 ncbi Arthrobacter aurescens TC14


Names of the homologs of the genes in the group in each of these orgs
  G7516   G6714   EG11557   EG11368   
XORY360094 XOOORF_2148XOOORF_2148XOOORF_3160XOOORF_2148
XORY342109 XOO2323XOO2323XOO1740XOO2323
XORY291331 XOO2452XOO2452XOO1844XOO2452
XCAM487884 XCC-B100_2726XCC-B100_3041XCC-B100_2726
XCAM316273 XCAORF_1808XCAORF_1515XCAORF_1808
XCAM314565 XC_2700XC_2979XC_2700
XCAM190485 XCC1534XCC1262XCC1534
XAXO190486 XAC1584XAC1584XAC1314XAC1584
XAUT78245 XAUT_2485XAUT_0908XAUT_0912
VVUL216895 VV2_0491VV2_0491VV1_3170
VVUL196600 VVA1040VVA1040VV1118
VEIS391735 VEIS_3871VEIS_0461VEIS_3853VEIS_4105
TTHE300852 TTHA1434TTHA1434TTHA1434
TTEN273068 TTE0544TTE0544TTE0544TTE0544
TROS309801 TRD_0041TRD_A0099TRD_0041TRD_A0304
TFUS269800 TFU_1280TFU_0590TFU_1280TFU_1409
SWOL335541 SWOL_0790SWOL_2031SWOL_2031SWOL_2031
STYP99287 STM0070STM0070STM2307
STOK273063 ST0069ST2416ST0048ST1516
STHE292459 STH212STH212STH212STH212
SSP644076 SCH4B_3361SCH4B_3361SCH4B_3018
SSP292414 TM1040_3030TM1040_3030TM1040_2793
SSON300269 SSO_3070SSO_0042SSO_2323
SSOL273057 SSO2624SSO2624SSO2624
SSED425104 SSED_3225SSED_1476SSED_3225SSED_4478
SPEA398579 SPEA_2136SPEA_2136SPEA_4034SPEA_4225
SMEL266834 SMC01669SMC01153SMC01641
SMED366394 SMED_2206SMED_3574SMED_2177
SLOI323850 SHEW_2672SHEW_1670SHEW_2672SHEW_3814
SHIGELLA YGFGCAIDMENB
SHAL458817 SHAL_2108SHAL_2108SHAL_0224SHAL_4273
SFUM335543 SFUM_3584SFUM_3584SFUM_3584
SFLE373384 SFV_2965SFV_0030SFV_2333
SFLE198214 AAN44387.1AAN41699.1AAN43855.1
SERY405948 SACE_5406SACE_6207SACE_2852SACE_6914
SENT454169 SEHA_C0074SEHA_C0074SEHA_C2547
SENT321314 SCH_0064SCH_0064SCH_2307
SENT295319 SPA0071SPA0071SPA0556
SENT220341 STY0080STY0080STY2537
SENT209261 T0071T0071T0556
SAVE227882 SAV1350SAV2786SAV1350SAV3829
SARE391037 SARE_0716SARE_2837SARE_1099
SALA317655 SALA_3055SALA_3055SALA_1808
SACI56780 SYN_01309SYN_03076SYN_02400
SACI330779 SACI_2286SACI_2286SACI_2063SACI_1633
RXYL266117 RXYL_1762RXYL_0372RXYL_1762RXYL_2893
RSPH349102 RSPH17025_2591RSPH17025_2591RSPH17025_2591
RSPH349101 RSPH17029_0009RSPH17029_0009RSPH17029_0009RSPH17029_0009
RSPH272943 RSP_1340RSP_1340RSP_1340RSP_1340
RSP357808 ROSERS_2302ROSERS_2302ROSERS_2302ROSERS_0024
RSP101510 RHA1_RO07071RHA1_RO01538RHA1_RO02286RHA1_RO02630
RSOL267608 RSC2872RSC2872RSC2872RSC2872
RSAL288705 RSAL33209_1848RSAL33209_0181RSAL33209_2700
RRUB269796 RRU_A3801RRU_A3801RRU_A3801RRU_A3801
RPOM246200 SPO_0147SPO_0147SPO_A0285
RPAL316058 RPB_3557RPB_3557RPB_3602
RPAL316057 RPD_1908RPD_1908RPD_1865RPD_1542
RPAL316056 RPC_1036RPC_1738RPC_1675RPC_1033
RPAL316055 RPE_4127RPE_1836RPE_4127RPE_0612
RPAL258594 RPA1811RPA1811RPA1761RPA0653
RMET266264 RMET_2603RMET_3162RMET_5154RMET_3162
RLEG216596 PRL120069RL0373PRL100378PRL110025
RFER338969 RFER_1573RFER_1573RFER_1573
REUT381666 H16_A3307H16_A3307H16_A1889H16_B1695
REUT264198 REUT_A3010REUT_A3010REUT_A1667REUT_C6107
RETL347834 RHE_CH00356RHE_CH00356RHE_PC00129
RDEN375451 RD1_0205RD1_0205RD1_0613
RCAS383372 RCAS_3163RCAS_3163RCAS_3163RCAS_4218
PTHE370438 PTH_0515PTH_0515PTH_0515PTH_0515
PSTU379731 PST_1925PST_1925PST_0608PST_1925
PSP56811 PSYCPRWF_0903PSYCPRWF_0299PSYCPRWF_0299
PSP312153 PNUC_1611PNUC_1558PNUC_1558PNUC_1558
PSP296591 BPRO_0649BPRO_1122BPRO_1122BPRO_1122
PPUT76869 PPUTGB1_1843PPUTGB1_2612PPUTGB1_1843
PPUT351746 PPUT_3521PPUT_2475PPUT_3521
PPUT160488 PP_2217PP_3284PP_2217
PNAP365044 PNAP_3369PNAP_3369PNAP_3369PNAP_2124
PING357804 PING_0655PING_0655PING_0350
PGIN242619 PG_1079PG_1079PG_1523
PFLU220664 PFL_3064PFL_3064PFL_3064
PFLU216595 PFLU3030PFLU3030PFLU3030
PFLU205922 PFL_2866PFL_2866PFL_2866
PENT384676 PSEEN2791PSEEN2791PSEEN3545
PAER208964 PA1629PA1629PA1629PA2013
PAER208963 PA14_43440PA14_43440PA14_43440PA14_38470
PAER178306 PAE2479PAE1383PAE1383
OIHE221109 OB1698OB2120OB2668OB2323
OANT439375 OANT_0715OANT_0715OANT_0715
NWIN323098 NWI_2252NWI_2252NWI_2252
NSP35761 NOCA_4295NOCA_2726NOCA_4299
NPHA348780 NP2754ANP2632ANP2730A
NFAR247156 NFA10410NFA10410NFA29420NFA51380
NARO279238 SARO_1283SARO_0860SARO_0860
MXAN246197 MXAN_5593MXAN_3799MXAN_3799MXAN_3154
MVAN350058 MVAN_0344MVAN_4681MVAN_4588MVAN_0947
MTUB419947 MRA_1080MRA_3555MRA_0555
MTUB336982 TBFG_11088TBFG_10224TBFG_10559
MTBRV ECHA8RV3516RV0548C
MTBCDC MT1100MT0232MT0573
MSP266779 MESO_4101MESO_4101MESO_4101MESO_2953
MSP189918 MKMS_3270MKMS_4231MKMS_4155MKMS_0749
MSP164757 MJLS_3219MJLS_4387MJLS_4093MJLS_0729
MSP164756 MMCS_3208MMCS_4156MMCS_4079MMCS_0735
MSME246196 MSMEG_6777MSMEG_5277MSMEG_5198MSMEG_1075
MSED399549 MSED_2001MSED_0384MSED_2001MSED_2001
MMAG342108 AMB2242AMB2597AMB0634AMB0634
MLOT266835 MLR8134MLL1009MLR5044MLL5584
MGIL350054 MFLV_2036MFLV_2117MFLV_0025
MBOV410289 BCG_1128CBCG_3579BCG_0592C
MBOV233413 MB1099CMB3545MB0562C
MAVI243243 MAV_1195MAV_2597MAV_4596
MABS561007 MAB_2058MAB_1185CMAB_4588CMAB_3945
LSPH444177 BSPH_0912BSPH_4062BSPH_0902BSPH_4275
LCHO395495 LCHO_2461LCHO_0266LCHO_0266LCHO_1186
KPNE272620 GKPORF_B0457GKPORF_B0457GKPORF_B1964
JSP375286 MMA_0240MMA_0240MMA_0240
JSP290400 JANN_4211JANN_4211JANN_3824JANN_4211
HWAL362976 HQ2394AHQ2394AHQ1874A
HNEP81032 HNE_0566HNE_0566HNE_1182HNE_2443
HMOD498761 HM1_0893HM1_0893HM1_0893HM1_0893
HCHE349521 HCH_05047HCH_00640HCH_05047
HAUR316274 HAUR_1202HAUR_1202HAUR_1202
HARS204773 HEAR0207HEAR0207HEAR0207
GURA351605 GURA_3534GURA_3041GURA_3041GURA_3041
GTHE420246 GTNG_1924GTNG_1924GTNG_1451GTNG_2771
GSUL243231 GSU_1377GSU_1377GSU_1377GSU_1377
GMET269799 GMET_2071GMET_2071GMET_1524GMET_2224
GKAU235909 GK2039GK2039GK1602GK2873
GFOR411154 GFO_3215GFO_3215GFO_3215GFO_2070
FSP1855 FRANEAN1_2724FRANEAN1_1071FRANEAN1_4567
FJOH376686 FJOH_0936FJOH_0936FJOH_0936FJOH_2784
ELIT314225 ELI_10035ELI_10035ELI_00050
EFER585054 EFER_0044EFER_1603EFER_0044EFER_0906
ECOO157 YGFGCAIDMENB
ECOL83334 ECS3789ECS0039ECS3150
ECOL585397 ECED1_0035ECED1_0035ECED1_2730
ECOL585057 ECIAI39_3333ECIAI39_0037ECIAI39_2410
ECOL585056 ECUMN_3263ECUMN_0038ECUMN_2605
ECOL585055 EC55989_3207EC55989_1529EC55989_0036EC55989_2510
ECOL585035 ECS88_4526ECS88_0039ECS88_2413
ECOL585034 ECIAI1_3039ECIAI1_1393ECIAI1_0038ECIAI1_2340
ECOL481805 ECOLC_0791ECOLC_2262ECOLC_3619ECOLC_1386
ECOL469008 ECBD_0819ECBD_3579ECBD_1396
ECOL439855 ECSMS35_3055ECSMS35_0037ECSMS35_2417
ECOL413997 ECB_02750ECB_00040ECB_02189
ECOL409438 ECSE_3181ECSE_1478ECSE_0037ECSE_2522
ECOL405955 APECO1_2418APECO1_1945APECO1_4299
ECOL364106 UTI89_C4622UTI89_C0042UTI89_C2545
ECOL362663 ECP_0036ECP_0036ECP_2306
ECOL331111 ECE24377A_3246ECE24377A_1578ECE24377A_0038ECE24377A_2558
ECOL316407 ECK2915:JW2886:B2919ECK1390:JW1388:B1393ECK0037:JW0035:B0036ECK2256:JW2257:B2262
ECOL199310 C5023C0045C2805
DSHI398580 DSHI_3370DSHI_3370DSHI_3370
DRED349161 DRED_0401DRED_1492DRED_1781DRED_1492
DRAD243230 DR_1151DR_1151DR_1151DR_1151
DHAF138119 DSY1709DSY1709DSY1709DSY0520
DGEO319795 DGEO_1595DGEO_1595DGEO_1595DGEO_1595
DARO159087 DARO_4012DARO_0176DARO_1616
CTET212717 CTC_00479CTC_02427CTC_02427CTC_00479
CSP78 CAUL_5078CAUL_5078CAUL_5310CAUL_5078
CSP501479 CSE45_3473CSE45_3473CSE45_5123
CPER289380 CPR_2287CPR_2287CPR_2287CPR_2287
CPER195103 CPF_0090CPF_0090CPF_2585CPF_2585
CPER195102 CPE0095CPE0095CPE2301CPE2301
CNOV386415 NT01CX_0474NT01CX_0474NT01CX_0474NT01CX_0474
CMAQ397948 CMAQ_0337CMAQ_0337CMAQ_0337CMAQ_0337
CKLU431943 CKL_0454CKL_0454CKL_0454CKL_0454
CHYD246194 CHY_1601CHY_1293CHY_1739CHY_1601
CEFF196164 CE2776CE2776CE2776CE2780
CDIF272563 CD0800CD0800CD1057CD0800
CBOT536232 CLM_3614CLM_3614CLM_3614
CBOT515621 CLJ_B3474CLJ_B3474CLJ_B3474
CBOT508765 CLL_A0373CLL_A1990CLL_A0373CLL_A0373
CBOT498213 CLD_1329CLD_1329CLD_1329
CBOT441772 CLI_3341CLI_3341CLI_3341
CBOT441771 CLC_3112CLC_3112CLC_3112
CBOT441770 CLB_3238CLB_3238CLB_3238
CBOT36826 CBO3202CBO3202CBO3202
CBEI290402 CBEI_4544CBEI_4544CBEI_2034CBEI_0321
CAULO CC0006CC0006CC1814CC0006
CACE272562 CAC2712CAC2712CAC2712CAC2712
BXEN266265 BXE_B2996BXE_C0855BXE_C0322BXE_C1035
BWEI315730 BCERKBAB4_2359BCERKBAB4_4352BCERKBAB4_2359BCERKBAB4_4695
BVIE269482 BCEP1808_0521BCEP1808_0521BCEP1808_4573BCEP1808_4573
BTHU412694 BALH_2292BALH_4108BALH_2292BALH_4419
BTHU281309 BT9727_2331BT9727_4259BT9727_2331BT9727_4586
BTHA271848 BTH_I2899BTH_I2899BTH_I2899BTH_I2899
BSUI470137 BSUIS_A2022BSUIS_A2022BSUIS_A2022
BSUI204722 BR_2184BR_2184BR_2184
BSUB BSU28540BSU28540BSU30800
BSP376 BRADO5988BRADO2663BRADO2574
BSP36773 BCEP18194_A4040BCEP18194_A3631BCEP18194_B0149
BPUM315750 BPUM_1781BPUM_2511BPUM_1781BPUM_2716
BPSE320373 BURPS668_3548BURPS668_3544BURPS668_3544BURPS668_3544
BPSE320372 BURPS1710B_A3850BURPS1710B_A3847BURPS1710B_A3847BURPS1710B_A3847
BPSE272560 BPSL3043BPSL3040BPSL3040BPSL3040
BPET94624 BPET0783BPET0333BPET0783BPET0333
BPER257313 BP0627BP3277BP3198BP3277
BPAR257311 BPP3647BPP4144BPP3647BPP4144
BOVI236 GBOORF2177GBOORF2177GBOORF2177
BMEL359391 BAB1_2185BAB1_2185BAB1_2185
BMEL224914 BMEI1945BMEI1945BMEI1945BMEI1945
BMAL320389 BMA10247_A1903BMA10247_A1899BMA10247_A1899BMA10247_A1899
BMAL320388 BMASAVP1_0636BMASAVP1_0632BMASAVP1_0632BMASAVP1_0632
BMAL243160 BMA_A0544BMA_A0544BMA_A0544BMA_A0544
BLIC279010 BL00329BL00329BL02406
BJAP224911 BLL2783BLL3036BLL2946BLL6043
BHAL272558 BH0201BH0201BH1996BH1996
BCLA66692 ABC2671ABC2671ABC2671ABC1509
BCER572264 BCA_2635BCA_4630BCA_2635BCA_4989
BCER405917 BCE_2552BCE_4651BCE_2552BCE_5013
BCER315749 BCER98_3224BCER98_3224BCER98_1806BCER98_3491
BCER288681 BCE33L2290BCE33L4271BCE33L2290BCE33L4608
BCER226900 BC_4524BC_2487BC_2487BC_4853
BCEN331272 BCEN2424_0938BCEN2424_0544BCEN2424_5509BCEN2424_6400
BCEN331271 BCEN_0459BCEN_2561BCEN_5352BCEN_1429
BCAN483179 BCAN_A2226BCAN_A2226BCAN_A2226
BBRO257310 BB4704BB4614BB0763BB4614
BBAC264462 BD1852BD1852BD1852BD3492
BANT592021 BAA_2610BAA_4776BAA_2610BAA_5121
BANT568206 BAMEG_2049BAMEG_4795BAMEG_2049BAMEG_5143
BANT261594 GBAA2551GBAA4761GBAA2551GBAA5109
BANT260799 BAS2374BAS4420BAS2374BAS4748
BAMY326423 RBAM_025600RBAM_025600RBAM_027780
BAMB398577 BAMMC406_0474BAMMC406_0474BAMMC406_0474
BAMB339670 BAMB_0449BAMB_0449BAMB_0449
BABO262698 BRUAB1_2157BRUAB1_2157BRUAB1_2157
ASP76114 C2A174C2A174C2A309EBA1954
ASP62977 ACIAD1692ACIAD1692ACIAD1571ACIAD1692
ASP62928 AZO1927AZO1927AZO0790
ASP232721 AJS_0107AJS_3623AJS_0107AJS_3623
ASP1667 ARTH_0423ARTH_0423ARTH_1079ARTH_3283
AORE350688 CLOS_0165CLOS_0165CLOS_0165CLOS_0165
AFUL224325 AF_0435AF_0435AF_0435AF_1191
ADEH290397 ADEH_3742ADEH_1666ADEH_1666ADEH_1645
ACRY349163 ACRY_1450ACRY_1450ACRY_1450ACRY_1450
ACAU438753 AZC_0802AZC_0802AZC_0802AZC_0802
ABAU360910 BAV0710BAV3222BAV0710BAV3222
ABAC204669 ACID345_1213ACID345_1213ACID345_1213
AAVE397945 AAVE_0882AAVE_0882AAVE_0882AAVE_0882
AAUR290340 AAUR_0502AAUR_0502AAUR_1078AAUR_3275


Organism features enriched in list (features available for 225 out of the 241 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Pairs 0.003553255112
Disease:Botulism 0.008329355
Disease:Brucellosis 0.008329355
Disease:Opportunistic_infections 0.008329355
Endospores:No 0.000023559211
Endospores:Yes 2.816e-154753
GC_Content_Range4:0-40 2.922e-1736213
GC_Content_Range4:60-100 2.430e-25109145
GC_Content_Range7:30-40 6.816e-1722166
GC_Content_Range7:40-50 5.553e-625117
GC_Content_Range7:50-60 0.001022055107
GC_Content_Range7:60-70 5.512e-26104134
Genome_Size_Range5:2-4 0.000351758197
Genome_Size_Range5:4-6 3.728e-27130184
Genome_Size_Range5:6-10 5.112e-93747
Genome_Size_Range9:2-3 2.966e-1018120
Genome_Size_Range9:3-4 0.00378994077
Genome_Size_Range9:4-5 7.794e-106496
Genome_Size_Range9:5-6 4.356e-146688
Genome_Size_Range9:6-8 1.632e-73038
Habitat:Host-associated 1.906e-654206
Habitat:Multiple 0.000471886178
Habitat:Terrestrial 1.284e-72631
Motility:No 0.004430246151
Motility:Yes 8.792e-9136267
Optimal_temp.:25-30 0.00004201619
Optimal_temp.:30 0.00505081115
Optimal_temp.:30-37 0.0015452118
Oxygen_Req:Aerobic 0.000016094185
Shape:Coccus 2.882e-71282
Shape:Rod 7.184e-20185347
Shape:Spiral 0.0000647334



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 333
Effective number of orgs (counting one per cluster within 468 clusters): 253

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM40
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317581
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329531
YPES386656 ncbi Yersinia pestis Pestoides F1
YPES377628 ncbi Yersinia pestis Nepal5161
YPES360102 ncbi Yersinia pestis Antiqua1
YPES349746 ncbi Yersinia pestis Angola1
YPES214092 ncbi Yersinia pestis CO921
YPES187410 ncbi Yersinia pestis KIM 101
XFAS405440 ncbi Xylella fastidiosa M120
XFAS183190 ncbi Xylella fastidiosa Temecula10
XFAS160492 ncbi Xylella fastidiosa 9a5c0
WSUC273121 ncbi Wolinella succinogenes DSM 17400
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
VFIS312309 ncbi Vibrio fischeri ES1141
VCHO345073 ncbi Vibrio cholerae O3951
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169611
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/271
TWHI203267 ncbi Tropheryma whipplei Twist1
TTUR377629 ncbi Teredinibacter turnerae T79011
TTHE262724 ncbi Thermus thermophilus HB270
TSP28240 Thermotoga sp.0
TSP1755 Thermoanaerobacter sp.0
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332230
TPET390874 ncbi Thermotoga petrophila RKU-10
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TMAR243274 ncbi Thermotoga maritima MSB80
TLET416591 ncbi Thermotoga lettingae TMO0
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TERY203124 ncbi Trichodesmium erythraeum IMS1011
TELO197221 ncbi Thermosynechococcus elongatus BP-11
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12510
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252590
TDEN243275 ncbi Treponema denticola ATCC 354050
TCRU317025 ncbi Thiomicrospira crunogena XCL-20
STHE322159 ncbi Streptococcus thermophilus LMD-91
STHE299768 ncbi Streptococcus thermophilus CNRZ10660
STHE264199 ncbi Streptococcus thermophilus LMG 183111
SSUI391296 ncbi Streptococcus suis 98HAH330
SSUI391295 ncbi Streptococcus suis 05ZYH330
SSP84588 ncbi Synechococcus sp. WH 81021
SSP64471 ncbi Synechococcus sp. CC93111
SSP387093 ncbi Sulfurovum sp. NBC37-10
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)1
SSP321327 ncbi Synechococcus sp. JA-3-3Ab1
SSP1148 ncbi Synechocystis sp. PCC 68031
SSP1131 Synechococcus sp. CC96051
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153051
SRUB309807 ncbi Salinibacter ruber DSM 138551
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370552 ncbi Streptococcus pyogenes MGAS102700
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103940
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SPNE488221 ncbi Streptococcus pneumoniae 705850
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-60
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-140
SPNE171101 ncbi Streptococcus pneumoniae R60
SPNE170187 ncbi Streptococcus pneumoniae G540
SPNE1313 Streptococcus pneumoniae0
SMUT210007 ncbi Streptococcus mutans UA1590
SMAR399550 ncbi Staphylothermus marinus F10
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14351
SGOR29390 Streptococcus gordonii Challis1
SGLO343509 ncbi Sodalis glossinidius morsitans0
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122281
SEPI176279 ncbi Staphylococcus epidermidis RP62A1
SELO269084 ncbi Synechococcus elongatus PCC 63011
SDEN318161 ncbi Shewanella denitrificans OS2171
SDEG203122 ncbi Saccharophagus degradans 2-400
SCO ncbi Streptomyces coelicolor A3(2)1
SAUR93062 ncbi Staphylococcus aureus aureus COL1
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83251
SAUR426430 ncbi Staphylococcus aureus aureus Newman1
SAUR418127 ncbi Staphylococcus aureus aureus Mu31
SAUR367830 Staphylococcus aureus aureus USA3001
SAUR359787 ncbi Staphylococcus aureus aureus JH11
SAUR359786 ncbi Staphylococcus aureus aureus JH91
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4761
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2521
SAUR273036 ncbi Staphylococcus aureus RF1221
SAUR196620 ncbi Staphylococcus aureus aureus MW21
SAUR158879 ncbi Staphylococcus aureus aureus N3151
SAUR158878 ncbi Staphylococcus aureus aureus Mu501
SAGA211110 ncbi Streptococcus agalactiae NEM3160
SAGA208435 ncbi Streptococcus agalactiae 2603V/R0
SAGA205921 ncbi Streptococcus agalactiae A9090
RTYP257363 ncbi Rickettsia typhi Wilmington0
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RMAS416276 ncbi Rickettsia massiliae MTU50
RFEL315456 ncbi Rickettsia felis URRWXCal20
RCON272944 ncbi Rickettsia conorii Malish 70
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RALB246199 Ruminococcus albus 80
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97900
PSP117 Pirellula sp.0
PRUM264731 ncbi Prevotella ruminicola 231
PPRO298386 ncbi Photobacterium profundum SS91
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257450
PMUL272843 ncbi Pasteurella multocida multocida Pm701
PMOB403833 ncbi Petrotoga mobilis SJ950
PMAR93060 ncbi Prochlorococcus marinus MIT 92151
PMAR74547 ncbi Prochlorococcus marinus MIT 93131
PMAR74546 ncbi Prochlorococcus marinus MIT 93121
PMAR59920 ncbi Prochlorococcus marinus NATL2A1
PMAR167555 ncbi Prochlorococcus marinus NATL1A1
PMAR167546 ncbi Prochlorococcus marinus MIT 93011
PMAR167542 ncbi Prochlorococcus marinus MIT 95151
PMAR167540 Prochlorococcus marinus pastoris MED4ax1
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13751
PMAR146891 ncbi Prochlorococcus marinus AS96011
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO11
PINT246198 Prevotella intermedia 171
PHOR70601 ncbi Pyrococcus horikoshii OT30
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PDIS435591 ncbi Parabacteroides distasonis ATCC 85031
PCAR338963 ncbi Pelobacter carbinolicus DSM 23800
PATL342610 ncbi Pseudoalteromonas atlantica T6c1
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135141
PACN267747 ncbi Propionibacterium acnes KPA1712021
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
NSP387092 ncbi Nitratiruptor sp. SB155-20
NSP103690 ncbi Nostoc sp. PCC 71201
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NOCE323261 ncbi Nitrosococcus oceani ATCC 197070
NMUL323848 ncbi Nitrosospira multiformis ATCC 251960
NMEN374833 ncbi Neisseria meningitidis 0534420
NMEN272831 ncbi Neisseria meningitidis FAM180
NMEN122587 ncbi Neisseria meningitidis Z24910
NMEN122586 ncbi Neisseria meningitidis MC580
NGON242231 ncbi Neisseria gonorrhoeae FA 10900
NEUT335283 ncbi Nitrosomonas eutropha C910
NEUR228410 ncbi Nitrosomonas europaea ATCC 197180
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE264732 ncbi Moorella thermoacetica ATCC 390730
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MSYN262723 ncbi Mycoplasma synoviae 530
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E1
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MFLA265072 ncbi Methylobacillus flagellatus KT0
MEXT419610 ncbi Methylobacterium extorquens PA10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MCAP243233 ncbi Methylococcus capsulatus Bath0
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAER449447 ncbi Microcystis aeruginosa NIES-8431
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
LXYL281090 ncbi Leifsonia xyli xyli CTCB071
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53341
LSAK314315 ncbi Lactobacillus sakei sakei 23K0
LREU557436 ncbi Lactobacillus reuteri DSM 200161
LPLA220668 ncbi Lactobacillus plantarum WCFS10
LMON265669 ncbi Listeria monocytogenes 4b F23651
LMON169963 ncbi Listeria monocytogenes EGD-e1
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82931
LLAC272623 ncbi Lactococcus lactis lactis Il14031
LLAC272622 ncbi Lactococcus lactis cremoris SK111
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1301
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566011
LINN272626 ncbi Listeria innocua Clip112621
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LCAS321967 ncbi Lactobacillus casei ATCC 3340
LBRE387344 ncbi Lactobacillus brevis ATCC 3671
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1970
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5500
LACI272621 ncbi Lactobacillus acidophilus NCFM0
KRAD266940 ncbi Kineococcus radiotolerans SRS302161
ILOI283942 ncbi Idiomarina loihiensis L2TR0
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HSP64091 ncbi Halobacterium sp. NRC-11
HSOM228400 ncbi Haemophilus somnus 23361
HSOM205914 ncbi Haemophilus somnus 129PT1
HSAL478009 ncbi Halobacterium salinarum R11
HPYL85963 ncbi Helicobacter pylori J990
HPYL357544 ncbi Helicobacter pylori HPAG10
HPY ncbi Helicobacter pylori 266950
HMUK485914 ncbi Halomicrobium mukohataei DSM 122861
HINF71421 ncbi Haemophilus influenzae Rd KW201
HINF374930 ncbi Haemophilus influenzae PittEE1
HINF281310 ncbi Haemophilus influenzae 86-028NP1
HHEP235279 ncbi Helicobacter hepaticus ATCC 514490
HHAL349124 ncbi Halorhodospira halophila SL11
HDUC233412 ncbi Haemophilus ducreyi 35000HP1
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HACI382638 ncbi Helicobacter acinonychis Sheeba0
GVIO251221 ncbi Gloeobacter violaceus PCC 74210
GOXY290633 ncbi Gluconobacter oxydans 621H0
GBET391165 ncbi Granulibacter bethesdensis CGDNIH10
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-000
FTUL418136 ncbi Francisella tularensis tularensis WY96-34180
FTUL401614 ncbi Francisella novicida U1120
FTUL393115 ncbi Francisella tularensis tularensis FSC1980
FTUL393011 ncbi Francisella tularensis holarctica OSU180
FTUL351581 Francisella tularensis holarctica FSC2000
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S850
FRANT ncbi Francisella tularensis tularensis SCHU S40
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250170
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B10
FMAG334413 ncbi Finegoldia magna ATCC 293280
ESP42895 Enterobacter sp.1
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
EFAE226185 ncbi Enterococcus faecalis V5831
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10431
ECAN269484 ncbi Ehrlichia canis Jake0
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough0
DSP255470 ncbi Dehalococcoides sp. CBDB10
DSP216389 ncbi Dehalococcoides sp. BAV10
DNOD246195 ncbi Dichelobacter nodosus VCS1703A0
DETH243164 ncbi Dehalococcoides ethenogenes 1950
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G200
CVIO243365 ncbi Chromobacterium violaceum ATCC 124721
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA0
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CSAL290398 ncbi Chromohalobacter salexigens DSM 30430
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)0
CPSY167879 ncbi Colwellia psychrerythraea 34H1
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE251
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPHY357809 ncbi Clostridium phytofermentans ISDg0
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10620
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3821
CMIC31964 ncbi Clavibacter michiganensis sepedonicus1
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CJEJ407148 ncbi Campylobacter jejuni jejuni 811160
CJEJ360109 ncbi Campylobacter jejuni doylei 269.970
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1760
CJEJ195099 ncbi Campylobacter jejuni RM12210
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111680
CJAP155077 Cellvibrio japonicus0
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3810
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130321
CFET360106 ncbi Campylobacter fetus fetus 82-400
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131291
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C0
CCUR360105 ncbi Campylobacter curvus 525.920
CCON360104 ncbi Campylobacter concisus 138260
CCHL340177 ncbi Chlorobium chlorochromatii CaD31
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1110
CBUR360115 ncbi Coxiella burnetii RSA 3310
CBUR227377 ncbi Coxiella burnetii RSA 4930
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN0
CBLO203907 ncbi Candidatus Blochmannia floridanus0
CABO218497 ncbi Chlamydophila abortus S26/30
BTUR314724 ncbi Borrelia turicatae 91E1350
BTRI382640 ncbi Bartonella tribocorum CIP 1054760
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54821
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)0
BQUI283165 ncbi Bartonella quintana Toulouse0
BLON206672 ncbi Bifidobacterium longum NCC27050
BHER314723 ncbi Borrelia hermsii DAH0
BHEN283166 ncbi Bartonella henselae Houston-10
BGAR290434 ncbi Borrelia garinii PBi0
BFRA295405 ncbi Bacteroides fragilis YCH461
BFRA272559 ncbi Bacteroides fragilis NCTC 93431
BCIC186490 Candidatus Baumannia cicadellinicola0
BBUR224326 ncbi Borrelia burgdorferi B310
BBAC360095 ncbi Bartonella bacilliformis KC5830
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)0
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AVAR240292 ncbi Anabaena variabilis ATCC 294131
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4491
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL031
APLE416269 ncbi Actinobacillus pleuropneumoniae L201
APHA212042 ncbi Anaplasma phagocytophilum HZ0
ANAE240017 Actinomyces oris MG11
AMET293826 ncbi Alkaliphilus metalliredigens QYMF0
AMAR329726 ncbi Acaryochloris marina MBIC110171
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232700
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-10
ACEL351607 ncbi Acidothermus cellulolyticus 11B1
ABUT367737 ncbi Arcobacter butzleri RM40180
ABOR393595 ncbi Alcanivorax borkumensis SK20
AAEO224324 ncbi Aquifex aeolicus VF50


Names of the homologs of the genes in the group in each of these orgs
  G7516   G6714   EG11557   EG11368   
ZMOB264203
YPSE349747 YPSIP31758_1484
YPSE273123 YPTB2558
YPES386656 YPDSF_1935
YPES377628 YPN_2120
YPES360102 YPA_2017
YPES349746 YPANGOLA_A1783
YPES214092 YPO2525
YPES187410 Y1662
XFAS405440
XFAS183190
XFAS160492
WSUC273121
WPIP955
WPIP80849
VFIS312309 VF1669
VCHO345073 VC0395_A1559
VCHO VC1973
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496 TW0110
TWHI203267 TW110
TTUR377629 TERTU_2726
TTHE262724
TSP28240
TSP1755
TPSE340099
TPET390874
TPEN368408
TPAL243276
TMAR243274
TLET416591
TKOD69014
TERY203124 TERY_4088
TELO197221 TLL2458
TDEN326298
TDEN292415
TDEN243275
TCRU317025
STHE322159 STER_0427
STHE299768
STHE264199 STU0380
SSUI391296
SSUI391295
SSP84588 SYNW0998OR0030
SSP64471 GSYN1636
SSP387093
SSP321332 CYB_0565
SSP321327 CYA_0530
SSP1148 SLL1127
SSP1131 SYNCC9605_1123
SSAP342451 SSP1746
SRUB309807 SRU_2766
SPYO370554
SPYO370553
SPYO370552
SPYO370551
SPYO319701
SPYO293653
SPYO286636
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SPNE488221
SPNE487214
SPNE487213
SPNE171101
SPNE170187
SPNE1313
SMUT210007
SMAR399550
SHAE279808 SH1917
SGOR29390 SGO_1700
SGLO343509
SEPI176280 SE_0746
SEPI176279 SERP0632
SELO269084 SYC0926_D
SDEN318161 SDEN_1940
SDEG203122
SCO SCO5459
SAUR93062 SACOL1054
SAUR93061 SAOUHSC_00985
SAUR426430 NWMN_0915
SAUR418127 SAHV_1038
SAUR367830 SAUSA300_0948
SAUR359787 SAURJH1_1127
SAUR359786 SAURJH9_1104
SAUR282459 SAS0981
SAUR282458 SAR1019
SAUR273036 SAB0912
SAUR196620 MW0929
SAUR158879 SA0898
SAUR158878 SAV1045
SAGA211110
SAGA208435
SAGA205921
RTYP257363
RRIC452659
RRIC392021
RPRO272947
RMAS416276
RFEL315456
RCON272944
RCAN293613
RBEL391896
RBEL336407
RALB246199
RAKA293614
PTOR263820
PSP117
PRUM264731 GFRORF1684
PPRO298386 PBPRB1109
PPEN278197
PMUL272843 PM1096
PMOB403833
PMAR93060 P9215_06901
PMAR74547 PMT0405
PMAR74546 PMT9312_0608
PMAR59920 PMN2A_0044
PMAR167555 NATL1_06641
PMAR167546 P9301ORF_0649
PMAR167542 P9515ORF_0709
PMAR167540 PMM0608
PMAR167539 PRO_1053
PMAR146891 A9601_06641
PLUM243265 PLU3071
PINT246198 PIN_A1168
PHOR70601
PFUR186497
PDIS435591 BDI_1137
PCAR338963
PATL342610 PATL_2752
PAST100379
PARS340102 PARS_0453
PACN267747 PPA0907
PABY272844
OTSU357244
NSP387092
NSP103690 ALL2347
NSEN222891
NOCE323261
NMUL323848
NMEN374833
NMEN272831
NMEN122587
NMEN122586
NGON242231
NEUT335283
NEUR228410
MTHE349307
MTHE264732
MTHE187420
MSYN262723
MSUC221988 MS1792
MSTA339860
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR368407
MMAR267377
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGEN243273
MFLO265311
MFLA265072
MEXT419610
MCAP340047
MCAP243233
MBUR259564
MBAR269797
MART243272
MAER449447 MAE_45860
MAEO419665
MACE188937
LXYL281090 LXX01440
LWEL386043 LWE1691
LSAK314315
LREU557436 LREU_0887
LPLA220668
LMON265669 LMOF2365_1697
LMON169963 LMO1673
LMES203120 LEUM_0016
LLAC272623 L0171
LLAC272622 LACR_0771
LJOH257314
LINT267671 LIC_12495
LINT189518 LA1198
LINN272626 LIN1781
LHEL405566
LGAS324831
LDEL390333
LDEL321956
LCAS321967
LBRE387344 LVIS_0066
LBOR355277
LBOR355276
LACI272621
KRAD266940 KRAD_0641
ILOI283942
IHOS453591
HSP64091 VNG1079G
HSOM228400 HSM_1612
HSOM205914 HS_0562
HSAL478009 OE2561R
HPYL85963
HPYL357544
HPY
HMUK485914 HMUK_2252
HINF71421 HI_0968
HINF374930 CGSHIEE_07120
HINF281310 NTHI1141
HHEP235279
HHAL349124 HHAL_1129
HDUC233412 HD_1925
HBUT415426
HACI382638
GVIO251221
GOXY290633
GBET391165
FTUL458234
FTUL418136
FTUL401614
FTUL393115
FTUL393011
FTUL351581
FSUC59374
FRANT
FPHI484022
FNOD381764
FMAG334413
ESP42895 ENT638_2812
ERUM302409
ERUM254945
EFAE226185 EF_0445
ECHA205920
ECAR218491 ECA1213
ECAN269484
DVUL882
DSP255470
DSP216389
DNOD246195
DETH243164
DDES207559
CVIO243365 CV_2083
CVES412965
CTRA471473
CTRA471472
CSUL444179
CSAL290398
CRUT413404
CPSY167879 CPS_1430
CPRO264201 PC1064
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPHY357809
CPEL335992
CMUR243161
CMIC443906 CMM_0576
CMIC31964 CMS2584
CMET456442
CJEJ407148
CJEJ360109
CJEJ354242
CJEJ195099
CJEJ192222
CJAP155077
CHOM360107
CGLU196627 CG0548
CFET360106
CFEL264202
CDIP257309 DIP0421
CDES477974
CCUR360105
CCON360104
CCHL340177 CAG_1719
CCAV227941
CBUR434922
CBUR360115
CBUR227377
CBLO291272
CBLO203907
CABO218497
BTUR314724
BTRI382640
BTHE226186 BT_4702
BSP107806
BQUI283165
BLON206672
BHER314723
BHEN283166
BGAR290434
BFRA295405 BF1318
BFRA272559 BF1303
BCIC186490
BBUR224326
BBAC360095
BAPH372461
BAPH198804
BAFZ390236
AYEL322098
AVAR240292 AVA_0166
AURANTIMONAS
ASAL382245 ASA_3735
APLE434271 APJL_1860
APLE416269 APL_1824
APHA212042
ANAE240017 ANA_1649
AMET293826
AMAR329726 AM1_5258
AMAR234826
ALAI441768
AFER243159
AEHR187272
ACEL351607 ACEL_0400
ABUT367737
ABOR393595
AAEO224324


Organism features enriched in list (features available for 312 out of the 333 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Clusters 0.00030611617
Arrangment:Pairs 0.009460950112
Disease:Pharyngitis 0.006449888
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 0.00094871111
Disease:Wide_range_of_infections 0.00094871111
Disease:bronchitis_and_pneumonitis 0.006449888
Endospores:No 0.0000113137211
Endospores:Yes 1.786e-12553
GC_Content_Range4:0-40 8.225e-21167213
GC_Content_Range4:60-100 3.690e-2426145
GC_Content_Range7:30-40 1.850e-18135166
GC_Content_Range7:40-50 0.000486478117
GC_Content_Range7:50-60 0.000091740107
GC_Content_Range7:60-70 7.858e-2422134
Genome_Size_Range5:0-2 9.081e-42149155
Genome_Size_Range5:2-4 0.0016590121197
Genome_Size_Range5:4-6 4.799e-3135184
Genome_Size_Range5:6-10 1.182e-8747
Genome_Size_Range9:0-1 2.702e-82727
Genome_Size_Range9:1-2 1.552e-31122128
Genome_Size_Range9:2-3 2.962e-1297120
Genome_Size_Range9:3-4 0.00001292477
Genome_Size_Range9:4-5 9.835e-112396
Genome_Size_Range9:5-6 4.164e-171288
Genome_Size_Range9:6-8 1.007e-7538
Gram_Stain:Gram_Neg 0.0039113164333
Habitat:Host-associated 3.604e-8141206
Habitat:Multiple 0.000323977178
Habitat:Terrestrial 1.554e-6431
Motility:No 0.000361198151
Motility:Yes 4.154e-13100267
Optimal_temp.:25-30 0.0005985319
Optimal_temp.:30 0.0001504115
Optimal_temp.:30-37 0.00016951718
Oxygen_Req:Aerobic 1.515e-673185
Pathogenic_in:Human 0.0015153130213
Shape:Coccus 1.750e-96882
Shape:Irregular_coccus 0.00222651517
Shape:Rod 1.209e-22129347
Shape:Sphere 5.335e-61919
Shape:Spiral 0.00005422934



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
PWY-5177 (glutaryl-CoA degradation)2511720.5033
GLYOXYLATE-BYPASS (glyoxylate cycle)1691290.4716
PWY-561 (superpathway of glyoxylate cycle)1621250.4683
CENTFERM-PWY (acetyl-CoA fermentation to butyrate I)2081460.4580
TRESYN-PWY (trehalose biosynthesis I)1711270.4494
P163-PWY (lysine fermentation to acetate and butyrate)3672090.4490
VALDEG-PWY (valine degradation I)2901800.4481
TRPCAT-PWY (tryptophan degradation I (via anthranilate))99880.4481
PWY0-541 (cyclopropane fatty acid (CFA) biosynthesis)3001830.4416
GALACTCAT-PWY (D-galactonate degradation)104900.4398
P381-PWY (adenosylcobalamin biosynthesis II (late cobalt incorporation))3712080.4330
PWY-2361 (3-oxoadipate degradation)82760.4317
GLYSYN-THR-PWY (glycine biosynthesis IV)2151450.4286
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)1491130.4277
PROTOCATECHUATE-ORTHO-CLEAVAGE-PWY (protocatechuate degradation II (ortho-cleavage pathway))2471590.4275
CATECHOL-ORTHO-CLEAVAGE-PWY (catechol degradation to β-ketoadipate)103880.4272
PWY-5651 (tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde)103880.4272
PWY0-321 (phenylacetate degradation I (aerobic))1551160.4272
PWY0-823 (arginine degradation III (arginine decarboxylase/agmatinase pathway))2451570.4198
P108-PWY (pyruvate fermentation to propionate I)1601170.4157
CRNFORCAT-PWY (creatinine degradation I)1911320.4154
SULFATE-CYS-PWY (superpathway of sulfate assimilation and cysteine biosynthesis)3652030.4135
4AMINOBUTMETAB-PWY (superpathway of 4-aminobutyrate degradation)2121410.4103
PWY-6185 (4-methylcatechol degradation (ortho cleavage))107880.4073
PWY-6268 (adenosylcobalamin salvage from cobalamin)3171840.4046
GALACTARDEG-PWY (D-galactarate degradation I)1511110.4045
PWY-5194 (siroheme biosynthesis)3121820.4041



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G6714   EG11557   EG11368   
G75160.9998210.9996440.999296
G67140.9996010.999395
EG115570.998934
EG11368



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PAIRWISE BLAST SCORES:

  G7516   G6714   EG11557   EG11368   
G75160.0f0-6.6e-22-
G6714-0.0f0--
EG11557-8.0e-260.0f0-
EG11368---0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

G7516 (centered at G7516)
G6714 (centered at G6714)
EG11557 (centered at EG11557)
EG11368 (centered at EG11368)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7516   G6714   EG11557   EG11368   
254/623265/623233/623320/623
AAUR290340:2:Tyes005642710
AAVE397945:0:Tyes0000
ABAC204669:0:Tyes-000
ABAU360910:0:Tyes0252102521
ACAU438753:0:Tyes0000
ACEL351607:0:Tyes-0--
ACRY349163:8:Tyes0000
ADEH290397:0:Tyes211821210
AFUL224325:0:Tyes000746
AHYD196024:0:Tyes-1525-0
AMAR329726:9:Tyes---0
ANAE240017:0:Tyes---0
AORE350688:0:Tyes0000
APER272557:0:Tyes00--
APLE416269:0:Tyes---0
APLE434271:0:Tno---0
ASAL382245:5:Tyes---0
ASP1667:3:Tyes006642887
ASP232721:2:Tyes0341703417
ASP62928:0:Tyes11671167-0
ASP62977:0:Tyes1191190119
ASP76114:2:Tyes001951
AVAR240292:3:Tyes---0
BABO262698:1:Tno000-
BAMB339670:3:Tno000-
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