CANDIDATE ID: 860

CANDIDATE ID: 860

NUMBER OF GENES: 4
AVERAGE SCORE:    9.9913783e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    5.0000000e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7409 (ygaD) (b2700)
   Products of gene:
     - G7409-MONOMER (conserved protein)

- G7358 (yfjG) (b2619)
   Products of gene:
     - G7358-MONOMER (toxin of a putative toxin-antitoxin pair)

- EG11645 (ydeJ) (b1537)
   Products of gene:
     - EG11645-MONOMER (conserved protein)

- EG11306 (lipA) (b0628)
   Products of gene:
     - EG11306-MONOMER (lipoate synthase monomer)
     - CPLX0-782 (lipoate synthase)
       Reactions:
        an octanoylated protein lipoyl-domain + 2 S-adenosyl-L-methionine + 2 S2-  ->  a lipoylated protein lipoyl-domain + 2 5'-deoxyadenosine + 2 L-methionine
         In pathways
         PWY0-1275 (lipoate biosynthesis and incorporation II)
         PWY0-501 (lipoate biosynthesis and incorporation I)



Back to top


ORGANISMS CONTAINING AT LEAST 3 GENES FROM THE GROUP:

Total number of orgs: 289
Effective number of orgs (counting one per cluster within 468 clusters): 216

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM44
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317584
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329534
YPES386656 ncbi Yersinia pestis Pestoides F4
YPES377628 ncbi Yersinia pestis Nepal5164
YPES360102 ncbi Yersinia pestis Antiqua4
YPES349746 ncbi Yersinia pestis Angola4
YPES214092 ncbi Yersinia pestis CO924
YPES187410 ncbi Yersinia pestis KIM 104
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80814
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A4
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110184
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103314
XFAS405440 ncbi Xylella fastidiosa M124
XFAS183190 ncbi Xylella fastidiosa Temecula14
XFAS160492 ncbi Xylella fastidiosa 9a5c4
XCAM487884 Xanthomonas campestris pv. paulliniae4
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-104
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80044
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339134
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3064
XAUT78245 ncbi Xanthobacter autotrophicus Py24
VVUL216895 ncbi Vibrio vulnificus CMCP64
VVUL196600 ncbi Vibrio vulnificus YJ0164
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106334
VEIS391735 ncbi Verminephrobacter eiseniae EF01-24
VCHO345073 ncbi Vibrio cholerae O3954
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169614
TTUR377629 ncbi Teredinibacter turnerae T79014
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB43
TSP1755 Thermoanaerobacter sp.3
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332233
TERY203124 ncbi Trichodesmium erythraeum IMS1013
TELO197221 ncbi Thermosynechococcus elongatus BP-13
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252594
TCRU317025 ncbi Thiomicrospira crunogena XCL-24
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT24
STHE292459 ncbi Symbiobacterium thermophilum IAM 148633
SSP94122 ncbi Shewanella sp. ANA-34
SSP84588 ncbi Synechococcus sp. WH 81023
SSP644076 Silicibacter sp. TrichCH4B4
SSP387093 ncbi Sulfurovum sp. NBC37-13
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)3
SSP321327 ncbi Synechococcus sp. JA-3-3Ab3
SSP292414 ncbi Ruegeria sp. TM10404
SSP1148 ncbi Synechocystis sp. PCC 68033
SSP1131 Synechococcus sp. CC96053
SSON300269 ncbi Shigella sonnei Ss0464
SSED425104 ncbi Shewanella sediminis HAW-EB34
SPRO399741 ncbi Serratia proteamaculans 5684
SPEA398579 ncbi Shewanella pealeana ATCC 7003454
SONE211586 ncbi Shewanella oneidensis MR-14
SMEL266834 ncbi Sinorhizobium meliloti 10214
SMED366394 ncbi Sinorhizobium medicae WSM4194
SLOI323850 ncbi Shewanella loihica PV-44
SLAC55218 Ruegeria lacuscaerulensis4
SHIGELLA ncbi Shigella flexneri 2a str. 2457T4
SHAL458817 ncbi Shewanella halifaxensis HAW-EB44
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB3
SFLE373384 ncbi Shigella flexneri 5 str. 84013
SFLE198214 ncbi Shigella flexneri 2a str. 3014
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4764
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B674
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91504
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT184
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty24
SDYS300267 ncbi Shigella dysenteriae Sd1974
SDEN318161 ncbi Shewanella denitrificans OS2174
SDEG203122 ncbi Saccharophagus degradans 2-404
SBOY300268 ncbi Shigella boydii Sb2274
SBAL402882 ncbi Shewanella baltica OS1854
SBAL399599 ncbi Shewanella baltica OS1954
SALA317655 ncbi Sphingopyxis alaskensis RB22564
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99413
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170254
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170294
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.14
RSOL267608 ncbi Ralstonia solanacearum GMI10004
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332093
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111704
RPOM246200 ncbi Ruegeria pomeroyi DSS-34
RPAL316058 ncbi Rhodopseudomonas palustris HaA24
RPAL316057 ncbi Rhodopseudomonas palustris BisB54
RPAL316056 ncbi Rhodopseudomonas palustris BisB184
RPAL316055 ncbi Rhodopseudomonas palustris BisA534
RPAL258594 ncbi Rhodopseudomonas palustris CGA0094
RMET266264 ncbi Ralstonia metallidurans CH344
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38414
RFER338969 ncbi Rhodoferax ferrireducens T1184
REUT381666 ncbi Ralstonia eutropha H164
REUT264198 ncbi Ralstonia eutropha JMP1344
RETL347834 ncbi Rhizobium etli CFN 424
RDEN375451 ncbi Roseobacter denitrificans OCh 1144
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30004
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a4
PSTU379731 ncbi Pseudomonas stutzeri A15014
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-14
PSP296591 ncbi Polaromonas sp. JS6664
PPUT76869 ncbi Pseudomonas putida GB-14
PPUT351746 ncbi Pseudomonas putida F14
PPUT160488 ncbi Pseudomonas putida KT24404
PPRO298386 ncbi Photobacterium profundum SS94
PNAP365044 ncbi Polaromonas naphthalenivorans CJ24
PMEN399739 ncbi Pseudomonas mendocina ymp4
PMAR93060 ncbi Prochlorococcus marinus MIT 92153
PMAR74547 ncbi Prochlorococcus marinus MIT 93133
PMAR74546 ncbi Prochlorococcus marinus MIT 93123
PMAR167555 ncbi Prochlorococcus marinus NATL1A3
PMAR167546 ncbi Prochlorococcus marinus MIT 93013
PMAR167542 ncbi Prochlorococcus marinus MIT 95153
PMAR167540 Prochlorococcus marinus pastoris MED4ax3
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13753
PMAR146891 ncbi Prochlorococcus marinus AS96013
PLUT319225 ncbi Chlorobium luteolum DSM 2733
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO14
PING357804 ncbi Psychromonas ingrahamii 374
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1254
PGIN242619 ncbi Porphyromonas gingivalis W833
PFLU220664 ncbi Pseudomonas fluorescens Pf-54
PFLU216595 ncbi Pseudomonas fluorescens SBW254
PFLU205922 ncbi Pseudomonas fluorescens Pf0-14
PENT384676 ncbi Pseudomonas entomophila L484
PDIS435591 ncbi Parabacteroides distasonis ATCC 85033
PCAR338963 ncbi Pelobacter carbinolicus DSM 23803
PATL342610 ncbi Pseudoalteromonas atlantica T6c4
PAER208964 ncbi Pseudomonas aeruginosa PAO14
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA144
OTSU357244 ncbi Orientia tsutsugamushi Boryong4
OCAR504832 ncbi Oligotropha carboxidovorans OM53
OANT439375 ncbi Ochrobactrum anthropi ATCC 491884
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2554
NSP103690 ncbi Nostoc sp. PCC 71203
NOCE323261 ncbi Nitrosococcus oceani ATCC 197074
NMUL323848 ncbi Nitrosospira multiformis ATCC 251964
NMEN374833 ncbi Neisseria meningitidis 0534424
NMEN272831 ncbi Neisseria meningitidis FAM184
NMEN122587 ncbi Neisseria meningitidis Z24914
NMEN122586 ncbi Neisseria meningitidis MC584
NHAM323097 ncbi Nitrobacter hamburgensis X144
NGON242231 ncbi Neisseria gonorrhoeae FA 10904
NEUT335283 ncbi Nitrosomonas eutropha C914
NEUR228410 ncbi Nitrosomonas europaea ATCC 197184
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124444
MXAN246197 ncbi Myxococcus xanthus DK 16223
MTHE264732 ncbi Moorella thermoacetica ATCC 390733
MSP409 Methylobacterium sp.4
MSP400668 ncbi Marinomonas sp. MWYL14
MSP266779 ncbi Chelativorans sp. BNC14
MSME246196 ncbi Mycobacterium smegmatis MC2 1553
MPET420662 ncbi Methylibium petroleiphilum PM14
MMAR394221 ncbi Maricaulis maris MCS104
MMAG342108 ncbi Magnetospirillum magneticum AMB-14
MLOT266835 ncbi Mesorhizobium loti MAFF3030994
MFLA265072 ncbi Methylobacillus flagellatus KT4
MEXT419610 ncbi Methylobacterium extorquens PA14
MCAP243233 ncbi Methylococcus capsulatus Bath4
MAVI243243 ncbi Mycobacterium avium 1043
MAQU351348 ncbi Marinobacter aquaeolei VT84
MAER449447 ncbi Microcystis aeruginosa NIES-8433
LPNE400673 ncbi Legionella pneumophila Corby4
LPNE297246 ncbi Legionella pneumophila Paris4
LPNE297245 ncbi Legionella pneumophila Lens4
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 14
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1303
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566013
LCHO395495 ncbi Leptothrix cholodnii SP-64
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1973
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5503
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)3
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)3
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785784
JSP375286 ncbi Janthinobacterium sp. Marseille4
JSP290400 ncbi Jannaschia sp. CCS14
ILOI283942 ncbi Idiomarina loihiensis L2TR4
HNEP81032 Hyphomonas neptunium4
HMUK485914 ncbi Halomicrobium mukohataei DSM 122863
HHAL349124 ncbi Halorhodospira halophila SL14
HCHE349521 ncbi Hahella chejuensis KCTC 23964
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237793
HARS204773 ncbi Herminiimonas arsenicoxydans4
GVIO251221 ncbi Gloeobacter violaceus PCC 74213
GURA351605 ncbi Geobacter uraniireducens Rf43
GSUL243231 ncbi Geobacter sulfurreducens PCA3
GOXY290633 ncbi Gluconobacter oxydans 621H4
GMET269799 ncbi Geobacter metallireducens GS-153
GBET391165 ncbi Granulibacter bethesdensis CGDNIH14
FJOH376686 ncbi Flavobacterium johnsoniae UW1013
ESP42895 Enterobacter sp.4
ERUM302409 ncbi Ehrlichia ruminantium Gardel3
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden3
ELIT314225 ncbi Erythrobacter litoralis HTCC25944
EFER585054 ncbi Escherichia fergusonii ATCC 354694
ECOO157 ncbi Escherichia coli O157:H7 EDL9334
ECOL83334 Escherichia coli O157:H74
ECOL585397 ncbi Escherichia coli ED1a4
ECOL585057 ncbi Escherichia coli IAI394
ECOL585056 ncbi Escherichia coli UMN0264
ECOL585055 ncbi Escherichia coli 559894
ECOL585035 ncbi Escherichia coli S884
ECOL585034 ncbi Escherichia coli IAI14
ECOL481805 ncbi Escherichia coli ATCC 87394
ECOL469008 ncbi Escherichia coli BL21(DE3)4
ECOL439855 ncbi Escherichia coli SMS-3-54
ECOL413997 ncbi Escherichia coli B str. REL6064
ECOL409438 ncbi Escherichia coli SE114
ECOL405955 ncbi Escherichia coli APEC O14
ECOL364106 ncbi Escherichia coli UTI894
ECOL362663 ncbi Escherichia coli 5364
ECOL331111 ncbi Escherichia coli E24377A4
ECOL316407 ncbi Escherichia coli K-12 substr. W31104
ECOL199310 ncbi Escherichia coli CFT0734
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas3
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10434
ECAN269484 ncbi Ehrlichia canis Jake3
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough3
DSHI398580 ncbi Dinoroseobacter shibae DFL 124
DRED349161 ncbi Desulfotomaculum reducens MI-13
DPSY177439 ncbi Desulfotalea psychrophila LSv543
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G203
DARO159087 ncbi Dechloromonas aromatica RCB4
CVIO243365 ncbi Chromobacterium violaceum ATCC 124724
CTEP194439 ncbi Chlorobium tepidum TLS3
CSP78 Caulobacter sp.4
CSP501479 Citreicella sp. SE454
CSAL290398 ncbi Chromohalobacter salexigens DSM 30434
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)4
CPSY167879 ncbi Colwellia psychrerythraea 34H4
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10623
CKLU431943 ncbi Clostridium kluyveri DSM 5553
CJAP155077 Cellvibrio japonicus4
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334063
CCHL340177 ncbi Chlorobium chlorochromatii CaD33
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1114
CBUR360115 ncbi Coxiella burnetii RSA 3314
CBUR227377 ncbi Coxiella burnetii RSA 4934
CAULO ncbi Caulobacter crescentus CB154
BXEN266265 ncbi Burkholderia xenovorans LB4003
BVIE269482 ncbi Burkholderia vietnamiensis G44
BTRI382640 ncbi Bartonella tribocorum CIP 1054764
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54823
BTHA271848 ncbi Burkholderia thailandensis E2644
BSUI470137 ncbi Brucella suis ATCC 234454
BSUI204722 ncbi Brucella suis 13304
BSUB ncbi Bacillus subtilis subtilis 1683
BSP376 Bradyrhizobium sp.4
BSP36773 Burkholderia sp.4
BQUI283165 ncbi Bartonella quintana Toulouse4
BPSE320373 ncbi Burkholderia pseudomallei 6684
BPSE320372 ncbi Burkholderia pseudomallei 1710b4
BPSE272560 ncbi Burkholderia pseudomallei K962434
BPET94624 Bordetella petrii4
BPER257313 ncbi Bordetella pertussis Tohama I4
BPAR257311 ncbi Bordetella parapertussis 128224
BOVI236 Brucella ovis4
BMEL359391 ncbi Brucella melitensis biovar Abortus 23084
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M4
BMAL320389 ncbi Burkholderia mallei NCTC 102474
BMAL320388 ncbi Burkholderia mallei SAVP14
BMAL243160 ncbi Burkholderia mallei ATCC 233444
BLIC279010 ncbi Bacillus licheniformis ATCC 145803
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1104
BHEN283166 ncbi Bartonella henselae Houston-14
BFRA295405 ncbi Bacteroides fragilis YCH463
BFRA272559 ncbi Bacteroides fragilis NCTC 93433
BCEN331272 ncbi Burkholderia cenocepacia HI24244
BCEN331271 ncbi Burkholderia cenocepacia AU 10544
BCAN483179 ncbi Brucella canis ATCC 233654
BBRO257310 ncbi Bordetella bronchiseptica RB504
BAMB398577 ncbi Burkholderia ambifaria MC40-64
BAMB339670 ncbi Burkholderia ambifaria AMMD4
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9414
AVAR240292 ncbi Anabaena variabilis ATCC 294133
ASP76114 ncbi Aromatoleum aromaticum EbN14
ASP62928 ncbi Azoarcus sp. BH724
ASP232721 ncbi Acidovorax sp. JS424
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4494
APHA212042 ncbi Anaplasma phagocytophilum HZ3
AMET293826 ncbi Alkaliphilus metalliredigens QYMF3
AMAR329726 ncbi Acaryochloris marina MBIC110173
AMAR234826 ncbi Anaplasma marginale St. Maries3
AHYD196024 Aeromonas hydrophila dhakensis4
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232704
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-14
ACRY349163 ncbi Acidiphilium cryptum JF-54
ACAU438753 ncbi Azorhizobium caulinodans ORS 5714
ABOR393595 ncbi Alcanivorax borkumensis SK23
ABAU360910 ncbi Bordetella avium 197N4
AAVE397945 ncbi Acidovorax citrulli AAC00-14
AAEO224324 ncbi Aquifex aeolicus VF53


Names of the homologs of the genes in the group in each of these orgs
  G7409   G7358   EG11645   EG11306   
ZMOB264203 ZMO1130ZMO1131ZMO1130ZMO1132
YPSE349747 YPSIP31758_3241YPSIP31758_2892YPSIP31758_3241YPSIP31758_2955
YPSE273123 YPTB0822YPTB1136YPTB0822YPTB1091
YPES386656 YPDSF_3053YPDSF_2595YPDSF_3053YPDSF_2655
YPES377628 YPN_0786YPN_2896YPN_0786YPN_1083
YPES360102 YPA_2837YPA_0580YPA_2837YPA_2501
YPES349746 YPANGOLA_A0902YPANGOLA_A1373YPANGOLA_A0902YPANGOLA_A1855
YPES214092 YPO3308YPO1102YPO3308YPO2598
YPES187410 Y0880Y3078Y0880Y1171
YENT393305 YE0828YE0995YE0828YE3008
XORY360094 XOOORF_1723XOOORF_2978XOOORF_1723XOOORF_0941
XORY342109 XOO2796XOO1905XOO2796XOO3730
XORY291331 XOO2944XOO2024XOO2944XOO3952
XFAS405440 XFASM12_0067XFASM12_1519XFASM12_0067XFASM12_0599
XFAS183190 PD_0063PD_1377PD_0063PD_0530
XFAS160492 XF0086XF2347XF0086XF1269
XCAM487884 XCC-B100_2541XCC-B100_2806XCC-B100_2541XCC-B100_0745
XCAM316273 XCAORF_1954XCAORF_1727XCAORF_1954XCAORF_3791
XCAM314565 XC_2513XC_2770XC_2513XC_0713
XCAM190485 XCC1718XCC1467XCC1718XCC3451
XAXO190486 XAC1737XAC1514XAC1737XAC0668
XAUT78245 XAUT_4307XAUT_3898XAUT_4307XAUT_3897
VVUL216895 VV1_1590VV1_0370VV1_1590VV1_0284
VVUL196600 VV2807VV0819VV2807VV0900
VPAR223926 VP2551VP0645VP2551VP0716
VEIS391735 VEIS_0581VEIS_3902VEIS_0581VEIS_0470
VCHO345073 VC0395_A0069VC0395_A0375VC0395_A0069VC0395_A0467
VCHO VC0542VC0849VC0542VC0943
TTUR377629 TERTU_2824TERTU_3302TERTU_2824TERTU_0611
TTEN273068 TTE1375TTE1375TTE1672
TSP1755 TETH514_1628TETH514_1628TETH514_2036
TPSE340099 TETH39_1192TETH39_1192TETH39_0787
TERY203124 TERY_2662TERY_2662TERY_1957
TELO197221 TLR2129TLR2129TLR0613
TDEN292415 TBD_2195TBD_1755TBD_2195TBD_0274
TCRU317025 TCR_1593TCR_1408TCR_1593TCR_1639
STYP99287 STM2830STM2687STM1514STM0633
STHE292459 STH1643STH1643STH2153
SSP94122 SHEWANA3_3908SHEWANA3_2951SHEWANA3_3908SHEWANA3_0988
SSP84588 SYNW0261OR1281SYNW0261OR1281SYNW2130OR2840
SSP644076 SCH4B_2277SCH4B_2276SCH4B_2277SCH4B_2273
SSP387093 SUN_1797SUN_1797SUN_0965
SSP321332 CYB_2262CYB_2262CYB_1117
SSP321327 CYA_0547CYA_0547CYA_2347
SSP292414 TM1040_1366TM1040_1367TM1040_1366TM1040_1371
SSP1148 SLR0427SLR0427SLR1598
SSP1131 SYNCC9605_0255SYNCC9605_0255SYNCC9605_0328
SSON300269 SSO_2844SSO_2744SSO_1591SSO_0582
SSED425104 SSED_4280SSED_1408SSED_4280SSED_3492
SPRO399741 SPRO_0840SPRO_3689SPRO_0840SPRO_1195
SPEA398579 SPEA_0223SPEA_1283SPEA_0223SPEA_3156
SONE211586 SO_0272SO_1474SO_0272SO_1161
SMEL266834 SMC01039SMC01038SMC01039SMC01037
SMED366394 SMED_1086SMED_1085SMED_1086SMED_1083
SLOI323850 SHEW_0198SHEW_1269SHEW_0198SHEW_2942
SLAC55218 SL1157_2679SL1157_3083SL1157_2679SL1157_3087
SHIGELLA YGADS2856YDEJLIPA
SHAL458817 SHAL_4097SHAL_1346SHAL_4097SHAL_3241
SFUM335543 SFUM_2530SFUM_2530SFUM_2644
SFLE373384 SFV_2805SFV_1553SFV_0698
SFLE198214 AAN44215.1AAN44173.1AAN43147.1AAN42289.1
SENT454169 SEHA_C3016SEHA_C2902SEHA_C1685SEHA_C0748
SENT321314 SCH_2763SCH_2687SCH_1532SCH_0662
SENT295319 SPA2688SPA2546SPA1341SPA2101
SENT220341 STY2951STY2873STY1547STY0683
SENT209261 T2731T2641T1435T2234
SDYS300267 SDY_2896SDY_2792SDY_1588SDY_0550
SDEN318161 SDEN_0246SDEN_1240SDEN_0246SDEN_0867
SDEG203122 SDE_1287SDE_2739SDE_1287SDE_3334
SBOY300268 SBO_2818SBO_2754SBO_1611SBO_0492
SBAL402882 SHEW185_4098SHEW185_1299SHEW185_4098SHEW185_3324
SBAL399599 SBAL195_4216SBAL195_1335SBAL195_4216SBAL195_3460
SALA317655 SALA_1279SALA_1280SALA_1279SALA_1281
RXYL266117 RXYL_2558RXYL_2558RXYL_2548
RSPH349102 RSPH17025_1482RSPH17025_1045RSPH17025_1482RSPH17025_1041
RSPH349101 RSPH17029_1462RSPH17029_1429RSPH17029_1462RSPH17029_1425
RSPH272943 RSP_2833RSP_2787RSP_2833RSP_2783
RSOL267608 RSC2770RSC1425RSC2770RSC0322
RSAL288705 RSAL33209_0718RSAL33209_0718RSAL33209_2443
RRUB269796 RRU_A1870RRU_A1876RRU_A1870RRU_A1877
RPOM246200 SPO_2092SPO_2096SPO_2092SPO_2102
RPAL316058 RPB_2886RPB_2887RPB_2886RPB_2888
RPAL316057 RPD_2586RPD_2585RPD_2586RPD_2584
RPAL316056 RPC_2574RPC_2573RPC_2574RPC_2572
RPAL316055 RPE_2754RPE_2753RPE_2754RPE_2752
RPAL258594 RPA2589RPA2588RPA2589RPA2587
RMET266264 RMET_3049RMET_1457RMET_3049RMET_0061
RLEG216596 RL2253RL2252RL2253RL2249
RFER338969 RFER_0076RFER_2291RFER_0076RFER_3934
REUT381666 H16_A3156H16_A2034H16_A3156H16_A0123
REUT264198 REUT_A2850REUT_A1860REUT_A2850REUT_A0086
RETL347834 RHE_CH01944RHE_CH01943RHE_CH01944RHE_CH01941
RDEN375451 RD1_2769RD1_2770RD1_2769RD1_2773
PSYR223283 PSPTO_4034PSPTO_4513PSPTO_4034PSPTO_4818
PSYR205918 PSYR_1377PSYR_4201PSYR_1377PSYR_4358
PSTU379731 PST_1507PST_3333PST_1507PST_3774
PSP312153 PNUC_0221PNUC_1425PNUC_0221PNUC_1961
PSP296591 BPRO_4476BPRO_2437BPRO_4476BPRO_0313
PPUT76869 PPUTGB1_1230PPUTGB1_4733PPUTGB1_3003PPUTGB1_4853
PPUT351746 PPUT_4089PPUT_4598PPUT_4089PPUT_4675
PPUT160488 PP_1628PP_4732PP_3298PP_4800
PPRO298386 PBPRA3069PBPRA0691PBPRA3069PBPRA2896
PNAP365044 PNAP_3667PNAP_2004PNAP_3667PNAP_0242
PMEN399739 PMEN_3016PMEN_3630PMEN_2276PMEN_3791
PMAR93060 P9215_02811P9215_02811P9215_17821
PMAR74547 PMT1845PMT1845PMT1775
PMAR74546 PMT9312_0259PMT9312_0259PMT9312_1606
PMAR167555 NATL1_03351NATL1_03351NATL1_19551
PMAR167546 P9301ORF_0283P9301ORF_0283P9301ORF_1738
PMAR167542 P9515ORF_0301P9515ORF_0301P9515ORF_1766
PMAR167540 PMM0257PMM0257PMM1514
PMAR167539 PRO_0289PRO_0289PRO_1670
PMAR146891 A9601_02791A9601_02791A9601_17181
PLUT319225 PLUT_1982PLUT_1982PLUT_1084
PLUM243265 PLU1248PLU3377PLU1248PLU1291
PING357804 PING_3382PING_1603PING_3382PING_3030
PHAL326442 PSHAA0693PSHAA0842PSHAA0693PSHAA1019
PGIN242619 PG_1725PG_1725PG_0504
PFLU220664 PFL_1230PFL_0821PFL_4720PFL_5445
PFLU216595 PFLU1188PFLU5275PFLU1188PFLU5416
PFLU205922 PFL_1174PFL_0757PFL_1174PFL_4963
PENT384676 PSEEN4129PSEEN0771PSEEN4129PSEEN4819
PDIS435591 BDI_0533BDI_0533BDI_2192
PCAR338963 PCAR_2403PCAR_2403PCAR_0346
PATL342610 PATL_3262PATL_1740PATL_3262PATL_1553
PAER208964 PA3618PA4767PA2141PA3996
PAER208963 PA14_17520PA14_63050PA14_36880PA14_12130
OTSU357244 OTBS_0341OTBS_0389OTBS_0341OTBS_0390
OCAR504832 OCAR_6092OCAR_6092OCAR_6091
OANT439375 OANT_2068OANT_2066OANT_2068OANT_2065
NWIN323098 NWI_1441NWI_1440NWI_1441NWI_1439
NSP103690 ALR4808ALR4808ALL1694
NOCE323261 NOC_0922NOC_1197NOC_0922NOC_2629
NMUL323848 NMUL_A0015NMUL_A1202NMUL_A0015NMUL_A1987
NMEN374833 NMCC_0044NMCC_0761NMCC_0044NMCC_1095
NMEN272831 NMC0019NMC0749NMC0019NMC1110
NMEN122587 NMA0289NMA1006NMA0289NMA1378
NMEN122586 NMB_0043NMB_0797NMB_0043NMB_1216
NHAM323097 NHAM_1833NHAM_1832NHAM_1833NHAM_1831
NGON242231 NGO2058NGO0381NGO2058NGO0793
NEUT335283 NEUT_2521NEUT_0586NEUT_2521NEUT_0757
NEUR228410 NE2561NE0429NE2561NE1489
NARO279238 SARO_1923SARO_1922SARO_1923SARO_1921
MXAN246197 MXAN_7138MXAN_7138MXAN_4218
MTHE264732 MOTH_0735MOTH_0735MOTH_1762
MSP409 M446_5926M446_5925M446_5926M446_5924
MSP400668 MMWYL1_3733MMWYL1_3970MMWYL1_3733MMWYL1_2841
MSP266779 MESO_1622MESO_1623MESO_1622MESO_1624
MSME246196 MSMEG_3512MSMEG_0129MSMEG_3512
MPET420662 MPE_A0212MPE_A1617MPE_A0212MPE_A1598
MMAR394221 MMAR10_1438MMAR10_1437MMAR10_1438MMAR10_1436
MMAG342108 AMB2548AMB2323AMB2548AMB2322
MLOT266835 MLL0394MLR0393MLL0394MLR0392
MFLA265072 MFLA_0571MFLA_1144MFLA_0571MFLA_2501
MEXT419610 MEXT_2816MEXT_2800MEXT_2816MEXT_2799
MCAP243233 MCA_0385MCA_1696MCA_0385MCA_0110
MAVI243243 MAV_2800MAV_2800MAV_2270
MAQU351348 MAQU_2083MAQU_3368MAQU_2083MAQU_2373
MAER449447 MAE_16790MAE_16790MAE_08190
LPNE400673 LPC_1247LPC_2975LPC_1247LPC_2548
LPNE297246 LPP1767LPP0435LPP1767LPP0810
LPNE297245 LPL1767LPL0411LPL1767LPL0781
LPNE272624 LPG1804LPG0370LPG1804LPG0745
LINT267671 LIC_12101LIC_12101LIC_11646
LINT189518 LA1689LA1689LA2292
LCHO395495 LCHO_3921LCHO_2058LCHO_3921LCHO_0401
LBOR355277 LBJ_1205LBJ_1205LBJ_1322
LBOR355276 LBL_1257LBL_1257LBL_1547
LBIF456481 LEPBI_I2088LEPBI_I2088LEPBI_I1462
LBIF355278 LBF_2034LBF_2034LBF_1409
KPNE272620 GKPORF_B2359GKPORF_B2274GKPORF_B0655GKPORF_B5084
JSP375286 MMA_0607MMA_2037MMA_1654MMA_3252
JSP290400 JANN_2233JANN_2231JANN_2233JANN_2226
ILOI283942 IL0743IL0897IL0743IL0960
HNEP81032 HNE_2017HNE_2020HNE_2017HNE_2021
HMUK485914 HMUK_2959HMUK_2959HMUK_0672
HHAL349124 HHAL_1656HHAL_1484HHAL_1656HHAL_0116
HCHE349521 HCH_05233HCH_01217HCH_05233HCH_05836
HAUR316274 HAUR_3194HAUR_3194HAUR_0183
HARS204773 HEAR0640HEAR1356HEAR0640HEAR3003
GVIO251221 GLR2441GLR2441GLL1029
GURA351605 GURA_0217GURA_0217GURA_0399
GSUL243231 GSU_0143GSU_0143GSU_0380
GOXY290633 GOX2296GOX2294GOX2296GOX2293
GMET269799 GMET_0196GMET_0196GMET_3150
GBET391165 GBCGDNIH1_1192GBCGDNIH1_1189GBCGDNIH1_1192GBCGDNIH1_1188
FJOH376686 FJOH_4984FJOH_4984FJOH_0227
ESP42895 ENT638_3175ENT638_3099ENT638_3132ENT638_1163
ERUM302409 ERGA_CDS_05660ERGA_CDS_09310ERGA_CDS_05440
ERUM254945 ERWE_CDS_05760ERWE_CDS_09400ERWE_CDS_05550
ELIT314225 ELI_06300ELI_06305ELI_06300ELI_06310
EFER585054 EFER_0374EFER_0454EFER_1538EFER_2476
ECOO157 YGADZ3912YDEJLIPA
ECOL83334 ECS3557ECS3481ECS2146ECS0666
ECOL585397 ECED1_3149ECED1_3057ECED1_3149ECED1_0624
ECOL585057 ECIAI39_2886ECIAI39_2822ECIAI39_2886ECIAI39_0603
ECOL585056 ECUMN_3021ECUMN_2943ECUMN_3021ECUMN_0720
ECOL585055 EC55989_2962EC55989_2907EC55989_1678EC55989_0620
ECOL585035 ECS88_2963ECS88_2805ECS88_2963ECS88_0669
ECOL585034 ECIAI1_2792ECIAI1_2740ECIAI1_1556ECIAI1_0611
ECOL481805 ECOLC_1012ECOLC_1065ECOLC_2121ECOLC_3017
ECOL469008 ECBD_1025ECBD_1068ECBD_2102ECBD_3023
ECOL439855 ECSMS35_2823ECSMS35_2771ECSMS35_2823ECSMS35_0648
ECOL413997 ECB_02550ECB_02507ECB_01496ECB_00597
ECOL409438 ECSE_2948ECSE_2902ECSE_1633ECSE_0695
ECOL405955 APECO1_3826APECO1_3916APECO1_3826APECO1_1427
ECOL364106 UTI89_C3062UTI89_C2953UTI89_C3062UTI89_C0631
ECOL362663 ECP_2660ECP_2619ECP_2660ECP_0658
ECOL331111 ECE24377A_2984ECE24377A_2903ECE24377A_1746ECE24377A_0652
ECOL316407 ECK2695:JW2670:B2700ECK2615:JW2600:B2619ECK1530:JW1530:B1537ECK0621:JW0623:B0628
ECOL199310 C3254C3141C3254C0718
ECHA205920 ECH_0473ECH_0005ECH_0490
ECAR218491 ECA3370ECA0837ECA3370ECA1297
ECAN269484 ECAJ_0553ECAJ_0933ECAJ_0537
DVUL882 DVU_1033DVU_1033DVU_0905
DSHI398580 DSHI_1579DSHI_1580DSHI_1579DSHI_1583
DRED349161 DRED_1922DRED_1922DRED_0610
DPSY177439 DP2957DP2957DP0296
DDES207559 DDE_1458DDE_1458DDE_2714
DARO159087 DARO_3874DARO_2341DARO_3874DARO_0287
CVIO243365 CV_2370CV_3463CV_2370CV_3097
CTEP194439 CT_2029CT_2029CT_1078
CSP78 CAUL_2602CAUL_2750CAUL_2602CAUL_2751
CSP501479 CSE45_1376CSE45_1374CSE45_1376CSE45_2170
CSAL290398 CSAL_0622CSAL_3100CSAL_0622CSAL_1552
CRUT413404 RMAG_0441RMAG_0378RMAG_0441RMAG_0543
CPSY167879 CPS_3682CPS_3828CPS_3682CPS_1709
CPEL335992 SAR11_0942SAR11_0943SAR11_0941
CKLU431943 CKL_3409CKL_3409CKL_2273
CJAP155077 CJA_2231CJA_3361CJA_2231CJA_0797
CHUT269798 CHU_2526CHU_2526CHU_3189
CCHL340177 CAG_0143CAG_0143CAG_1068
CBUR434922 COXBU7E912_0987COXBU7E912_1392COXBU7E912_0987COXBU7E912_1351
CBUR360115 COXBURSA331_A0880COXBURSA331_A1454COXBURSA331_A0880COXBURSA331_A1414
CBUR227377 CBU_1055CBU_1304CBU_1055CBU_1266
CAULO CC1737CC1736CC1737CC1735
BXEN266265 BXE_C0164BXE_C0164BXE_B0316
BVIE269482 BCEP1808_0602BCEP1808_1904BCEP1808_0602BCEP1808_2983
BTRI382640 BT_0869BT_0867BT_0869BT_0866
BTHE226186 BT_0917BT_0917BT_4192
BTHA271848 BTH_I1186BTH_I2050BTH_I1186BTH_I0386
BSUI470137 BSUIS_A1170BSUIS_A1172BSUIS_A1170BSUIS_A1173
BSUI204722 BR_1121BR_1123BR_1121BR_1124
BSUB BSU16930BSU16930BSU32330
BSP376 BRADO3870BRADO3878BRADO3870BRADO3879
BSP36773 BCEP18194_A3710BCEP18194_A5308BCEP18194_A3710BCEP18194_A6230
BQUI283165 BQ04970BQ04960BQ04970BQ04950
BPSE320373 BURPS668_3442BURPS668_2411BURPS668_3442BURPS668_0444
BPSE320372 BURPS1710B_A3754BURPS1710B_A2781BURPS1710B_A3754BURPS1710B_A0668
BPSE272560 BPSL2962BPSL2136BPSL2962BPSL0414
BPET94624 BPET3953BPET2513BPET3953BPET4803
BPER257313 BP3489BP1443BP3489BP0106
BPAR257311 BPP0862BPP1550BPP0862BPP0170
BOVI236 GBOORF1121GBOORF1123GBOORF1121GBOORF1124
BMEL359391 BAB1_1144BAB1_1146BAB1_1144BAB1_1147
BMEL224914 BMEI0862BMEI0860BMEI0862BMEI0859
BMAL320389 BMA10247_3306BMA10247_1302BMA10247_3306BMA10247_3186
BMAL320388 BMASAVP1_A0399BMASAVP1_A2031BMASAVP1_A0399BMASAVP1_A0218
BMAL243160 BMA_2480BMA_1531BMA_2480BMA_0052
BLIC279010 BL05163BL05163BL02143
BJAP224911 BLL4484BLR4478BLL4484BLR4477
BHEN283166 BH05810BH05800BH05810BH05790
BFRA295405 BF2430BF2430BF0976
BFRA272559 BF2511BF2511BF0898
BCEN331272 BCEN2424_0628BCEN2424_1998BCEN2424_0628BCEN2424_2887
BCEN331271 BCEN_0145BCEN_6079BCEN_0145BCEN_2272
BCAN483179 BCAN_A1140BCAN_A1142BCAN_A1140BCAN_A1143
BBRO257310 BB0956BB2628BB0956BB0172
BAMB398577 BAMMC406_0553BAMMC406_1900BAMMC406_0553BAMMC406_2799
BAMB339670 BAMB_0529BAMB_2031BAMB_0529BAMB_2937
BABO262698 BRUAB1_1127BRUAB1_1129BRUAB1_1127BRUAB1_1130
AVAR240292 AVA_2078AVA_2078AVA_1162
ASP76114 EBA3399EBA6653EBA3399EBA3050
ASP62928 AZO0508AZO1577AZO0508AZO0184
ASP232721 AJS_0354AJS_2551AJS_0354AJS_0298
ASAL382245 ASA_3808ASA_2921ASA_3808ASA_1054
APHA212042 APH_0347APH_1265APH_0367
AMET293826 AMET_1704AMET_1704AMET_4425
AMAR329726 AM1_1941AM1_1941AM1_3776
AMAR234826 AM841AM1272AM820
AHYD196024 AHA_3717AHA_1444AHA_3717AHA_3263
AFER243159 AFE_2116AFE_2749AFE_2116AFE_0532
AEHR187272 MLG_1484MLG_1908MLG_1484MLG_1586
ACRY349163 ACRY_1911ACRY_2825ACRY_1911ACRY_2824
ACAU438753 AZC_3090AZC_1748AZC_3090AZC_1747
ABOR393595 ABO_1802ABO_1802ABO_1964
ABAU360910 BAV0574BAV1756BAV0574BAV0139
AAVE397945 AAVE_0429AAVE_3373AAVE_0429AAVE_0362
AAEO224324 AQ_1996AQ_1996AQ_1355


Organism features enriched in list (features available for 271 out of the 289 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 1.790e-81992
Disease:Bubonic_plague 0.009790666
Disease:Dysentery 0.009790666
Disease:Gastroenteritis 0.00454151113
Disease:Pneumonia 0.0053937112
Endospores:No 1.817e-1553211
Endospores:Yes 7.550e-8753
GC_Content_Range4:0-40 4.986e-3233213
GC_Content_Range4:40-60 4.491e-10140224
GC_Content_Range4:60-100 2.183e-998145
GC_Content_Range7:0-30 5.560e-9447
GC_Content_Range7:30-40 4.932e-2029166
GC_Content_Range7:50-60 9.015e-1281107
GC_Content_Range7:60-70 3.607e-1297134
GC_Content_Range7:70-100 0.0093646111
Genome_Size_Range5:0-2 1.288e-2618155
Genome_Size_Range5:2-4 0.006136079197
Genome_Size_Range5:4-6 3.492e-19135184
Genome_Size_Range5:6-10 7.769e-83947
Genome_Size_Range9:1-2 3.056e-1818128
Genome_Size_Range9:2-3 0.000095038120
Genome_Size_Range9:4-5 1.802e-97196
Genome_Size_Range9:5-6 4.543e-86488
Genome_Size_Range9:6-8 1.145e-83438
Gram_Stain:Gram_Neg 9.930e-33224333
Gram_Stain:Gram_Pos 1.361e-3112150
Habitat:Aquatic 0.00136715591
Habitat:Host-associated 0.003987182206
Habitat:Specialized 0.00500721653
Motility:No 2.393e-1727151
Motility:Yes 4.310e-11163267
Optimal_temp.:- 0.0000550142257
Optimal_temp.:25-30 3.365e-71919
Optimal_temp.:37 0.000361434106
Oxygen_Req:Aerobic 0.0004151104185
Oxygen_Req:Anaerobic 3.017e-823102
Pathogenic_in:Human 0.002409284213
Salinity:Non-halophilic 0.001406036106
Shape:Coccus 1.453e-71782
Shape:Rod 6.530e-13203347
Shape:Sphere 0.0039633319
Temp._range:Hyperthermophilic 0.0000844223
Temp._range:Thermophilic 0.0052953935



Back to top


ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 218
Effective number of orgs (counting one per cluster within 468 clusters): 166

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
UURE95667 Ureaplasma urealyticum serovar 131
UURE95664 Ureaplasma urealyticum serovar 101
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278151
UMET351160 ncbi uncultured methanogenic archaeon RC-I1
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTHE300852 ncbi Thermus thermophilus HB81
TTHE262724 ncbi Thermus thermophilus HB271
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
STRO369723 ncbi Salinispora tropica CNB-4401
STOK273063 ncbi Sulfolobus tokodaii 70
STHE322159 ncbi Streptococcus thermophilus LMD-90
STHE299768 ncbi Streptococcus thermophilus CNRZ10660
STHE264199 ncbi Streptococcus thermophilus LMG 183110
SSUI391296 ncbi Streptococcus suis 98HAH330
SSUI391295 ncbi Streptococcus suis 05ZYH330
SSOL273057 ncbi Sulfolobus solfataricus P20
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153051
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370552 ncbi Streptococcus pyogenes MGAS102700
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103940
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SPNE488221 ncbi Streptococcus pneumoniae 705851
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-60
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-140
SPNE171101 ncbi Streptococcus pneumoniae R60
SPNE170187 ncbi Streptococcus pneumoniae G540
SPNE1313 Streptococcus pneumoniae0
SMUT210007 ncbi Streptococcus mutans UA1590
SMAR399550 ncbi Staphylothermus marinus F10
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14351
SGOR29390 Streptococcus gordonii Challis1
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23381
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122281
SEPI176279 ncbi Staphylococcus epidermidis RP62A1
SCO ncbi Streptomyces coelicolor A3(2)0
SAVE227882 ncbi Streptomyces avermitilis MA-46800
SAUR93062 ncbi Staphylococcus aureus aureus COL1
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83251
SAUR426430 ncbi Staphylococcus aureus aureus Newman1
SAUR418127 ncbi Staphylococcus aureus aureus Mu31
SAUR367830 Staphylococcus aureus aureus USA3001
SAUR359787 ncbi Staphylococcus aureus aureus JH11
SAUR359786 ncbi Staphylococcus aureus aureus JH91
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4761
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2521
SAUR273036 ncbi Staphylococcus aureus RF1221
SAUR196620 ncbi Staphylococcus aureus aureus MW21
SAUR158879 ncbi Staphylococcus aureus aureus N3151
SAUR158878 ncbi Staphylococcus aureus aureus Mu501
SARE391037 ncbi Salinispora arenicola CNS-2051
SAGA211110 ncbi Streptococcus agalactiae NEM3160
SAGA208435 ncbi Streptococcus agalactiae 2603V/R0
SAGA205921 ncbi Streptococcus agalactiae A9090
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RSP357808 ncbi Roseiflexus sp. RS-11
RSP101510 ncbi Rhodococcus jostii RHA10
RCAS383372 ncbi Roseiflexus castenholzii DSM 139410
PTOR263820 ncbi Picrophilus torridus DSM 97900
PSP56811 Psychrobacter sp.1
PSP117 Pirellula sp.1
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PHOR70601 ncbi Pyrococcus horikoshii OT30
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PCRY335284 ncbi Psychrobacter cryohalolentis K51
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PARC259536 ncbi Psychrobacter arcticus 273-41
PAER178306 ncbi Pyrobaculum aerophilum IM20
PACN267747 ncbi Propionibacterium acnes KPA1712020
PABY272844 ncbi Pyrococcus abyssi GE50
OIHE221109 ncbi Oceanobacillus iheyensis HTE8311
NSP35761 Nocardioides sp.0
NFAR247156 ncbi Nocardia farcinica IFM 101521
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MSYN262723 ncbi Mycoplasma synoviae 530
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E1
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPEN272633 ncbi Mycoplasma penetrans HF-21
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGEN243273 ncbi Mycoplasma genitalium G371
MFLO265311 ncbi Mesoplasma florum L11
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
MABS561007 ncbi Mycobacterium abscessus ATCC 199771
LXYL281090 ncbi Leifsonia xyli xyli CTCB070
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53340
LSPH444177 ncbi Lysinibacillus sphaericus C3-411
LSAK314315 ncbi Lactobacillus sakei sakei 23K0
LREU557436 ncbi Lactobacillus reuteri DSM 200161
LPLA220668 ncbi Lactobacillus plantarum WCFS11
LMON265669 ncbi Listeria monocytogenes 4b F23650
LMON169963 ncbi Listeria monocytogenes EGD-e0
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82930
LLAC272623 ncbi Lactococcus lactis lactis Il14030
LLAC272622 ncbi Lactococcus lactis cremoris SK110
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-000
LINN272626 ncbi Listeria innocua Clip112620
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LCAS321967 ncbi Lactobacillus casei ATCC 3341
LBRE387344 ncbi Lactobacillus brevis ATCC 3671
LACI272621 ncbi Lactobacillus acidophilus NCFM0
KRAD266940 ncbi Kineococcus radiotolerans SRS302161
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HINF71421 ncbi Haemophilus influenzae Rd KW201
HINF374930 ncbi Haemophilus influenzae PittEE1
HINF281310 ncbi Haemophilus influenzae 86-028NP1
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-21
GKAU235909 ncbi Geobacillus kaustophilus HTA4261
FSP106370 ncbi Frankia sp. CcI31
FMAG334413 ncbi Finegoldia magna ATCC 293281
FALN326424 ncbi Frankia alni ACN14a1
EFAE226185 ncbi Enterococcus faecalis V5831
DSP255470 ncbi Dehalococcoides sp. CBDB11
DSP216389 ncbi Dehalococcoides sp. BAV11
DRAD243230 ncbi Deinococcus radiodurans R11
DGEO319795 ncbi Deinococcus geothermalis DSM 113001
DETH243164 ncbi Dehalococcoides ethenogenes 1951
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE250
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3820
CMIC31964 ncbi Clavibacter michiganensis sepedonicus0
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CJEJ407148 ncbi Campylobacter jejuni jejuni 811160
CJEJ360109 ncbi Campylobacter jejuni doylei 269.970
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1760
CJEJ195099 ncbi Campylobacter jejuni RM12210
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111680
CJEI306537 ncbi Corynebacterium jeikeium K4111
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130320
CFET360106 ncbi Campylobacter fetus fetus 82-401
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CEFF196164 ncbi Corynebacterium efficiens YS-3141
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131290
CCON360104 ncbi Campylobacter concisus 138261
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN1
CBLO203907 ncbi Candidatus Blochmannia floridanus1
CABO218497 ncbi Chlamydophila abortus S26/30
BWEI315730 ncbi Bacillus weihenstephanensis KBAB41
BTUR314724 ncbi Borrelia turicatae 91E1350
BTHU412694 ncbi Bacillus thuringiensis Al Hakam1
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-271
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)1
BLON206672 ncbi Bifidobacterium longum NCC27050
BHER314723 ncbi Borrelia hermsii DAH0
BHAL272558 ncbi Bacillus halodurans C-1251
BGAR290434 ncbi Borrelia garinii PBi0
BCLA66692 ncbi Bacillus clausii KSM-K161
BCIC186490 Candidatus Baumannia cicadellinicola1
BCER572264 ncbi Bacillus cereus 03BB1021
BCER405917 Bacillus cereus W1
BCER315749 ncbi Bacillus cytotoxicus NVH 391-981
BCER288681 ncbi Bacillus cereus E33L1
BCER226900 ncbi Bacillus cereus ATCC 145791
BBUR224326 ncbi Borrelia burgdorferi B310
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)1
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)1
BANT592021 ncbi Bacillus anthracis A02481
BANT568206 ncbi Bacillus anthracis CDC 6841
BANT261594 ncbi Bacillus anthracis Ames Ancestor1
BANT260799 ncbi Bacillus anthracis Sterne1
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP62977 ncbi Acinetobacter sp. ADP11
APER272557 ncbi Aeropyrum pernix K10
ANAE240017 Actinomyces oris MG10
ALAI441768 ncbi Acholeplasma laidlawii PG-8A1
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
ACEL351607 ncbi Acidothermus cellulolyticus 11B1
AAUR290340 ncbi Arthrobacter aurescens TC10


Names of the homologs of the genes in the group in each of these orgs
  G7409   G7358   EG11645   EG11306   
UURE95667 UU083
UURE95664 UUR10_0089
UPAR505682 UPA3_0082
UMET351160 RRC130
TWHI218496
TWHI203267
TVOL273116
TTHE300852 TTHA0239
TTHE262724 TT_C1747
TPEN368408
TPAL243276
TKOD69014
TACI273075
STRO369723 STROP_1398
STOK273063
STHE322159
STHE299768
STHE264199
SSUI391296
SSUI391295
SSOL273057
SSAP342451 SSP1850
SPYO370554
SPYO370553
SPYO370552
SPYO370551
SPYO319701
SPYO293653
SPYO286636
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SPNE488221 SP70585_2020
SPNE487214
SPNE487213
SPNE171101
SPNE170187
SPNE1313
SMUT210007
SMAR399550
SHAE279808 SH2028
SGOR29390 SGO_2046
SERY405948 SACE_5880
SEPI176280 SE_0617
SEPI176279 SERP0511
SCO
SAVE227882
SAUR93062 SACOL0927
SAUR93061 SAOUHSC_00861
SAUR426430 NWMN_0796
SAUR418127 SAHV_0919
SAUR367830 SAUSA300_0829
SAUR359787 SAURJH1_0942
SAUR359786 SAURJH9_0923
SAUR282459 SAS0795
SAUR282458 SAR0887
SAUR273036 SAB0791
SAUR196620 MW0807
SAUR158879 SA0785
SAUR158878 SAV0924
SARE391037 SARE_1356
SAGA211110
SAGA208435
SAGA205921
SACI330779
RSP357808 ROSERS_1042
RSP101510
RCAS383372
PTOR263820
PSP56811 PSYCPRWF_0899
PSP117 RB4868
PISL384616
PHOR70601
PFUR186497
PCRY335284 PCRYO_0744
PAST100379
PARS340102
PARC259536 PSYC_0749
PAER178306
PACN267747
PABY272844
OIHE221109 OB1284
NSP35761
NFAR247156 NFA11620
MTHE349307
MTHE187420
MSYN262723
MSUC221988 MS1826
MSTA339860
MSED399549
MPUL272635
MPEN272633 MYPE6400
MMYC272632
MMOB267748
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR368407
MMAR267377
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGEN243273 MG_115
MFLO265311 MFL205
MCAP340047
MBUR259564
MBAR269797
MART243272
MAEO419665
MACE188937
MABS561007 MAB_2443
LXYL281090
LWEL386043
LSPH444177 BSPH_0562
LSAK314315
LREU557436 LREU_0522
LPLA220668 LP_2302
LMON265669
LMON169963
LMES203120
LLAC272623
LLAC272622
LJOH257314
LINT363253
LINN272626
LHEL405566
LGAS324831
LDEL390333
LDEL321956
LCAS321967 LSEI_0922
LBRE387344 LVIS_1238
LACI272621
KRAD266940 KRAD_3288
IHOS453591
HINF71421 HI_0026
HINF374930 CGSHIEE_03180
HINF281310 NTHI0033
HBUT415426
GTHE420246 GTNG_2924
GKAU235909 GK2974
FSP106370 FRANCCI3_3538
FMAG334413 FMG_1621
FALN326424 FRAAL5732
EFAE226185 EF_3172
DSP255470 CBDBA1229
DSP216389 DEHABAV1_1102
DRAD243230 DR_0765
DGEO319795 DGEO_1742
DETH243164 DET_1291
CTRA471473
CTRA471472
CSUL444179
CPRO264201
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CMUR243161
CMIC443906
CMIC31964
CMET456442
CMAQ397948
CKOR374847
CJEJ407148
CJEJ360109
CJEJ354242
CJEJ195099
CJEJ192222
CJEI306537 JK1123
CGLU196627
CFET360106 CFF8240_0608
CFEL264202
CEFF196164 CE1126
CDIP257309
CCON360104 CCC13826_0279
CCAV227941
CBLO291272 BPEN_567
CBLO203907 BFL547
CABO218497
BWEI315730 BCERKBAB4_4796
BTUR314724
BTHU412694 BALH_4504
BTHU281309 BT9727_4682
BSP107806 BU269
BLON206672
BHER314723
BHAL272558 BH3435
BGAR290434
BCLA66692 ABC2950
BCIC186490 BCI_0238
BCER572264 BCA_5104
BCER405917 BCE_5109
BCER315749 BCER98_3568
BCER288681 BCE33L4698
BCER226900 BC_4973
BBUR224326
BAPH372461 BCC_170
BAPH198804 BUSG259
BANT592021 BAA_5241
BANT568206 BAMEG_5262
BANT261594 GBAA5205
BANT260799 BAS4840
BAFZ390236
AYEL322098
AURANTIMONAS
ASP62977 ACIAD2275
APER272557
ANAE240017
ALAI441768 ACL_0192
AFUL224325
ACEL351607 ACEL_1497
AAUR290340


Organism features enriched in list (features available for 205 out of the 218 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 2.710e-65292
Arrangment:Clusters 1.229e-81717
Arrangment:Singles 0.000384182286
Disease:Food_poisoning 0.001263789
Disease:Pharyngitis 0.000213688
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 8.504e-61111
Disease:Wide_range_of_infections 8.504e-61111
Disease:bronchitis_and_pneumonitis 0.000213688
Disease:meningitis 0.000621377
Endospores:No 3.450e-17121211
GC_Content_Range4:0-40 1.115e-16121213
GC_Content_Range4:40-60 0.000033857224
GC_Content_Range4:60-100 3.650e-727145
GC_Content_Range7:0-30 0.00378432547
GC_Content_Range7:30-40 7.058e-1396166
GC_Content_Range7:50-60 6.083e-815107
GC_Content_Range7:60-70 1.784e-1018134
GC_Content_Range7:70-100 0.0017438911
Genome_Size_Range5:0-2 1.248e-18100155
Genome_Size_Range5:4-6 7.094e-1525184
Genome_Size_Range5:6-10 0.0002570647
Genome_Size_Range9:0-1 4.584e-92427
Genome_Size_Range9:1-2 1.317e-1076128
Genome_Size_Range9:2-3 0.000317158120
Genome_Size_Range9:3-4 0.00155111677
Genome_Size_Range9:4-5 6.413e-12796
Genome_Size_Range9:5-6 0.00056321888
Genome_Size_Range9:6-8 8.919e-6238
Gram_Stain:Gram_Neg 1.220e-3547333
Gram_Stain:Gram_Pos 1.209e-23104150
Motility:No 1.178e-1391151
Motility:Yes 3.962e-961267
Optimal_temp.:- 0.000031468257
Optimal_temp.:30-35 0.008261767
Optimal_temp.:30-37 4.082e-91818
Oxygen_Req:Aerobic 5.422e-642185
Oxygen_Req:Facultative 0.000291289201
Pathogenic_in:Swine 0.005206655
Shape:Coccus 4.446e-156182
Shape:Irregular_coccus 1.229e-81717
Shape:Rod 7.606e-1972347
Shape:Sphere 0.00008341519
Temp._range:Hyperthermophilic 0.00010861723



Back to top


ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 1
Effective number of orgs (counting one per cluster within 468 clusters): 1

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
OTSU357244 ncbi Orientia tsutsugamushi Boryong 0.00423542744


Names of the homologs of the genes in the group in each of these orgs
  G7409   G7358   EG11645   EG11306   
OTSU357244 OTBS_0341OTBS_0389OTBS_0341OTBS_0390


Organism features enriched in list (features available for 1 out of the 1 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Disease:Scrub_typhus 0.001715311



Back to top


ORGANISMS DEPLETED FOR GROUP:




Back to top


PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
NAGLIPASYN-PWY (lipid IVA biosynthesis)3482620.6519
PWY-4041 (γ-glutamyl cycle)2792290.6445
GLUTATHIONESYN-PWY (glutathione biosynthesis)3392550.6317
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2862300.6287
PWY-5918 (heme biosynthesis I)2722230.6284
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951780.6076
PWY-1269 (CMP-KDO biosynthesis I)3252450.6072
GLYCOCAT-PWY (glycogen degradation I)2462060.6050
UBISYN-PWY (ubiquinol-8 biosynthesis (prokaryotic))3982740.5989
PWY-5913 (TCA cycle variation IV)3012300.5821
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)1491450.5726
PYRIDOXSYN-PWY (pyridoxal 5'-phosphate biosynthesis I)4222780.5662
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3002270.5658
PWY0-501 (lipoate biosynthesis and incorporation I)3852620.5525
TYRFUMCAT-PWY (tyrosine degradation I)1841630.5478
SULFATE-CYS-PWY (superpathway of sulfate assimilation and cysteine biosynthesis)3652530.5468
PWY-5340 (sulfate activation for sulfonation)3852600.5393
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2912180.5355
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2962200.5330
PWY-5857 (ubiquinone-10 biosynthesis (prokaryotic))1831600.5308
PWY-5028 (histidine degradation II)1301270.5283
PWY0-845 (superpathway of pyridoxal 5'-phosphate biosynthesis and salvage)3292340.5247
PWY-5856 (ubiquinone-9 biosynthesis (prokaryotic))2551980.5218
PWY-5855 (ubiquinone-7 biosynthesis (prokaryotic))1911630.5194
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2902130.5064
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491920.5026
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491920.5026
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251790.5001
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181740.4918
PHENYLALANINE-DEG1-PWY (phenylalanine degradation I (aerobic))2892100.4901
PWY-3781 (aerobic respiration -- electron donor II)4052600.4868
PWY-5938 ((R)-acetoin biosynthesis I)3762480.4842
SO4ASSIM-PWY (sulfate reduction I (assimilatory))3112190.4811
GDPRHAMSYN-PWY (GDP-D-rhamnose biosynthesis)1561370.4802
PWY-6087 (4-chlorocatechol degradation)2231730.4670
PWY-6389 ((S)-acetoin biosynthesis)3682420.4667
PROSYN-PWY (proline biosynthesis I)4752820.4663
PWY-5386 (methylglyoxal degradation I)3052120.4540
P344-PWY (acrylonitrile degradation)2101640.4534
GLUCONSUPER-PWY (D-gluconate degradation)2291740.4524
AST-PWY (arginine degradation II (AST pathway))1201110.4516
PWY-6268 (adenosylcobalamin salvage from cobalamin)3172160.4439
PANTO-PWY (pantothenate biosynthesis I)4722770.4360
PWY0-862 (cis-dodecenoyl biosynthesis)3432260.4328
CHOLINE-BETAINE-ANA-PWY (choline degradation I)1351180.4326
PWY-5669 (phosphatidylethanolamine biosynthesis I)4162560.4307
FAO-PWY (fatty acid β-oxidation I)4572710.4296
BETSYN-PWY (glycine betaine biosynthesis I (Gram-negative bacteria))1381190.4262
PWY-5148 (acyl-CoA hydrolysis)2271690.4260
P381-PWY (adenosylcobalamin biosynthesis II (late cobalt incorporation))3712370.4256
THISYN-PWY (thiamin biosynthesis I)5022850.4241
PWY-6193 (3-chlorocatechol degradation II (ortho))1941510.4240
PLPSAL-PWY (pyridoxal 5'-phosphate salvage pathway)3742380.4239
PWY0-1313 (acetate conversion to acetyl-CoA)3852420.4200
BRANCHED-CHAIN-AA-SYN-PWY (superpathway of leucine, valine, and isoleucine biosynthesis)4582700.4197
PWY-5188 (tetrapyrrole biosynthesis I)4392630.4188
GALACTARDEG-PWY (D-galactarate degradation I)1511250.4128
ARGSYNBSUB-PWY (arginine biosynthesis II (acetyl cycle))3832400.4123
PWY0-541 (cyclopropane fatty acid (CFA) biosynthesis)3002030.4112
REDCITCYC (TCA cycle variation II)1741380.4110
GALACTCAT-PWY (D-galactonate degradation)104950.4036
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)1761380.4029
PWY-5986 (ammonium transport)3612290.4012



Back to top


PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G7358   EG11645   EG11306   
G74090.9991210.9999990.998698
G73580.9990050.999249
EG116450.998755
EG11306



Back to top


PAIRWISE BLAST SCORES:

  G7409   G7358   EG11645   EG11306   
G74090.0f0-2.4e-24-
G7358-0.0f0--
EG116456.5e-15-0.0f0-
EG11306---0.0f0



Back to top


PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.



Back to top


GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

G7409 (centered at G7409)
G7358 (centered at G7358)
EG11645 (centered at EG11645)
EG11306 (centered at EG11306)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7409   G7358   EG11645   EG11306   
378/623258/623376/623390/623
AAEO224324:0:Tyes458-4580
AAVE397945:0:Tyes672962670
ABAC204669:0:Tyes0--2370
ABAU360910:0:Tyes43516184350
ABOR393595:0:Tyes0-0165
ABUT367737:0:Tyes0-0-
ACAU438753:0:Tyes1357113570
ACEL351607:0:Tyes0---
ACRY349163:8:Tyes09210920
ADEH290397:0:Tyes1803--0
AEHR187272:0:Tyes04190100
AFER243159:0:Tyes1560218215600
AHYD196024:0:Tyes2184021841773
ALAI441768:0:Tyes--0-
AMAR234826:0:Tyes-153340
AMAR329726:9:Tyes0-01819
AMET293826:0:Tyes0-02722
AORE350688:0:Tyes0-0-
APHA212042:0:Tyes-086220
APLE416269:0:Tyes-0-1362
APLE434271:0:Tno-0-1364
ASAL382245:5:Tyes2651179126510
ASP1667:3:Tyes0--152
ASP232721:2:Tyes562188560
ASP62928:0:Tyes32914283290
ASP62977:0:Tyes---0
ASP76114:2:Tyes20721162070
AVAR240292:3:Tyes921-9210
BABO262698:1:Tno0102
BAMB339670:3:Tno0153302463
BAMB398577:3:Tno0135802275
BAMY326423:0:Tyes0--1265
BANT260799:0:Tno---0
BANT261594:2:Tno---0
BANT568206:2:Tyes---0
BANT592021:2:Tno---0
BAPH198804:0:Tyes---0
BAPH372461:0:Tyes---0
BBAC264462:0:Tyes0-0-
BBAC360095:0:Tyes-1-0
BBRO257310:0:Tyes78724747870
BCAN483179:1:Tno0203
BCEN331271:0:Tno-0--
BCEN331271:2:Tno0-02154
BCEN331272:3:Tyes0136802254
BCER226900:1:Tyes---0
BCER288681:0:Tno---0
BCER315749:1:Tyes---0
BCER405917:1:Tyes---0
BCER572264:1:Tno---0
BCIC186490:0:Tyes---0
BCLA66692:0:Tyes---0
BFRA272559:1:Tyes1562-15620
BFRA295405:0:Tno1471-14710
BHAL272558:0:Tyes---0
BHEN283166:0:Tyes2120
BJAP224911:0:Fyes7170
BLIC279010:0:Tyes0-01452
BMAL243160:1:Tno2174132621740
BMAL320388:1:Tno17917791790
BMAL320389:1:Tyes1962019621843
BMEL224914:1:Tno3130
BMEL359391:1:Tno0102
BOVI236:1:Tyes0102
BPAR257311:0:Tno66413196640
BPER257313:0:Tyes3047119030470
BPET94624:0:Tyes1472014722325
BPSE272560:1:Tyes2564172325640
BPSE320372:1:Tno2961201029610
BPSE320373:1:Tno2890190528900
BPUM315750:0:Tyes0--1301
BQUI283165:0:Tyes2120
BSP107806:2:Tyes---0
BSP36773:2:Tyes0162302564
BSP376:0:Tyes0607
BSUB:0:Tyes0-01620
BSUI204722:1:Tyes0203
BSUI470137:1:Tno0203
BTHA271848:1:Tno79016327900
BTHE226186:0:Tyes0-03337
BTHU281309:1:Tno---0
BTHU412694:1:Tno---0
BTRI382640:1:Tyes2120
BVIE269482:7:Tyes0129302360
BWEI315730:4:Tyes---0
BXEN266265:0:Tyes0-0-
BXEN266265:1:Tyes---0
CACE272562:1:Tyes0-0-
CAULO:0:Tyes2120
CBEI290402:0:Tyes0-0-
CBLO203907:0:Tyes-0--
CBLO291272:0:Tno-0--
CBOT36826:1:Tno0-0-
CBOT441770:0:Tyes0-0-
CBOT441771:0:Tno0-0-
CBOT441772:1:Tno0-0-
CBOT498213:1:Tno0-0-
CBOT508765:1:Tyes0-0-
CBOT515621:2:Tyes0-0-
CBOT536232:0:Tno0-0-
CBUR227377:1:Tyes02400204
CBUR360115:1:Tno05260488
CBUR434922:2:Tno03850344
CCHL340177:0:Tyes0-0929
CCON360104:2:Tyes0---
CCUR360105:0:Tyes0-0-
CDES477974:0:Tyes0-0-
CDIF272563:1:Tyes0-0-
CEFF196164:0:Fyes--0-
CFET360106:0:Tyes0---
CHOM360107:1:Tyes0-0-
CHUT269798:0:Tyes0-0650
CHYD246194:0:Tyes0-0-
CJAP155077:0:Tyes1392251513920
CJEI306537:0:Tyes--0-
CKLU431943:1:Tyes1126-11260
CNOV386415:0:Tyes0-0-
CPEL335992:0:Tyes-120
CPER195102:1:Tyes0-0-
CPER195103:0:Tno0-0-
CPER289380:3:Tyes0-0-
CPHY357809:0:Tyes0-0-
CPSY167879:0:Tyes1904204519040
CRUT413404:0:Tyes59059155
CSAL290398:0:Tyes025210955
CSP501479:8:Fyes202782
CSP78:2:Tyes01490150
CTEP194439:0:Tyes933-9330
CTET212717:0:Tyes0-0-
CVES412965:0:Tyes-0-139
CVIO243365:0:Tyes011190740
DARO159087:0:Tyes3616207536160
DDES207559:0:Tyes0-01279
DETH243164:0:Tyes0---
DGEO319795:1:Tyes---0
DHAF138119:0:Tyes0-0-
DNOD246195:0:Tyes-492-0
DOLE96561:0:Tyes0-0-
DPSY177439:2:Tyes2733-27330
DRAD243230:3:Tyes---0
DRED349161:0:Tyes1307-13070
DSHI398580:5:Tyes0104
DSP216389:0:Tyes0---
DSP255470:0:Tno0---
DVUL882:1:Tyes128-1280
ECAN269484:0:Tyes-153980
ECAR218491:0:Tyes256702567465
ECHA205920:0:Tyes-4490466
ECOL199310:0:Tno2487237524870
ECOL316407:0:Tno207620009180
ECOL331111:6:Tno2232216010450
ECOL362663:0:Tno2004195820040
ECOL364106:1:Tno2427231824270
ECOL405955:2:Tyes2130203321300
ECOL409438:6:Tyes230022499570
ECOL413997:0:Tno196719199000
ECOL439855:4:Tno2110206521100
ECOL469008:0:Tno04810771987
ECOL481805:0:Tno05711092014
ECOL585034:0:Tno216321129410
ECOL585035:0:Tno2215205822150
ECOL585055:0:Tno2326226910560
ECOL585056:2:Tno2321223823210
ECOL585057:0:Tno2292222422920
ECOL585397:0:Tno2464237124640
ECOL83334:0:Tno2963288015100
ECOLI:0:Tno212220479340
ECOO157:0:Tno2972288912890
EFAE226185:3:Tyes0---
EFER585054:1:Tyes08411502090
ELIT314225:0:Tyes0102
ERUM254945:0:Tyes-213930
ERUM302409:0:Tno-223950
ESP42895:1:Tyes2037195619890
FALN326424:0:Tyes0---
FJOH376686:0:Tyes4789-47890
FMAG334413:1:Tyes--0-
FNOD381764:0:Tyes0-0-
FNUC190304:0:Tyes0-0-
FPHI484022:1:Tyes-0-1560
FRANT:0:Tno-487-0
FSP106370:0:Tyes0---
FSP1855:0:Tyes0--2073
FSUC59374:0:Tyes0-0-
FTUL351581:0:Tno-0-132
FTUL393011:0:Tno-0-113
FTUL393115:0:Tyes-485-0
FTUL401614:0:Tyes-132-0
FTUL418136:0:Tno-123-0
FTUL458234:0:Tno-0-124
GBET391165:0:Tyes4140
GFOR411154:0:Tyes--0458
GKAU235909:1:Tyes---0
GMET269799:1:Tyes0-02958
GOXY290633:5:Tyes3130
GSUL243231:0:Tyes0-0234
GTHE420246:1:Tyes---0
GURA351605:0:Tyes0-0187
GVIO251221:0:Tyes1431-14310
HACI382638:1:Tyes0-0-
HARS204773:0:Tyes068602241
HAUR316274:2:Tyes3033-30330
HCHE349521:0:Tyes3866038664450
HDUC233412:0:Tyes-0-159
HHAL349124:0:Tyes1550137815500
HHEP235279:0:Tyes0-0-
HINF281310:0:Tyes---0
HINF374930:0:Tyes---0
HINF71421:0:Tno---0
HMAR272569:8:Tyes0-0-
HMOD498761:0:Tyes0-0-
HMUK485914:1:Tyes2299-22990
HNEP81032:0:Tyes0304
HPY:0:Tno0-0-
HPYL357544:1:Tyes0-0-
HPYL85963:0:Tno0-0-
HSAL478009:4:Tyes0-0-
HSOM205914:1:Tyes-193-0
HSOM228400:0:Tno-1598-0
HSP64091:2:Tno0-0-
HWAL362976:1:Tyes0-0-
ILOI283942:0:Tyes01540222
JSP290400:1:Tyes7570
JSP375286:0:Tyes0145010672674
KPNE272620:2:Tyes1676159704339
KRAD266940:2:Fyes---0
LBIF355278:2:Tyes622-6220
LBIF456481:2:Tno632-6320
LBOR355276:1:Tyes0-0262
LBOR355277:1:Tno0-099
LBRE387344:2:Tyes--0-
LCAS321967:1:Tyes--0-
LCHO395495:0:Tyes3549167735490
LINT189518:1:Tyes0-0608
LINT267671:1:Tno436-4360
LPLA220668:0:Tyes--0-
LPNE272624:0:Tno143101431374
LPNE297245:1:Fno134401344373
LPNE297246:1:Fyes132601326372
LPNE400673:0:Tno0169501275
LREU557436:0:Tyes--0-
LSPH444177:1:Tyes---0
MABS561007:1:Tyes0---
MAER449447:0:Tyes861-8610
MAQU351348:2:Tyes012760286
MAVI243243:0:Tyes527-5270
MBOV233413:0:Tno0-0-
MBOV410289:0:Tno0-0-
MCAP243233:0:Tyes26714922670
MEXT419610:0:Tyes161160
MFLA265072:0:Tyes057101925
MFLO265311:0:Tyes--0-
MGEN243273:0:Tyes--0-
MGIL350054:3:Tyes0-0-
MLEP272631:0:Tyes0-0-
MLOT266835:2:Tyes2120
MMAG342108:0:Tyes22612260
MMAR394221:0:Tyes2120
MPEN272633:0:Tyes--0-
MPET420662:1:Tyes0140501386
MPNE272634:0:Tyes0-0-
MSME246196:0:Tyes336203362-
MSP164756:1:Tno0-0-
MSP164757:0:Tno0-0-
MSP189918:2:Tyes0-0-
MSP266779:3:Tyes0102
MSP400668:0:Tyes90111439010
MSP409:2:Tyes2120
MSUC221988:0:Tyes---0
MTBCDC:0:Tno0-0-
MTBRV:0:Tno0-0-
MTHE264732:0:Tyes0-01010
MTUB336982:0:Tno0-0-
MTUB419947:0:Tyes0-0-
MVAN350058:0:Tyes0-0-
MXAN246197:0:Tyes2839-28390
NARO279238:0:Tyes2120
NEUR228410:0:Tyes2160021601072
NEUT335283:2:Tyes189901899173
NFAR247156:2:Tyes--0-
NGON242231:0:Tyes154001540382
NHAM323097:2:Tyes2120
NMEN122586:0:Tno072801128
NMEN122587:0:Tyes067301020
NMEN272831:0:Tno06680978
NMEN374833:0:Tno070301033
NMUL323848:3:Tyes0118101958
NOCE323261:1:Tyes027001679
NPHA348780:2:Tyes0-0-
NSEN222891:0:Tyes-1-0
NSP103690:6:Tyes3151-31510
NSP387092:0:Tyes0-0-
NWIN323098:0:Tyes2120
OANT439375:5:Tyes3130
OCAR504832:0:Tyes1-10
OIHE221109:0:Tyes---0
OTSU357244:0:Fyes042043
PAER208963:0:Tyes424415820010
PAER208964:0:Tno1499266901877
PARC259536:0:Tyes---0
PATL342610:0:Tyes173519017350
PCAR338963:0:Tyes2077-20770
PCRY335284:1:Tyes---0
PDIS435591:0:Tyes0-01645
PENT384676:0:Tyes3155031553820
PFLU205922:0:Tyes42004204261
PFLU216595:1:Tyes0393104068
PFLU220664:0:Tyes403038404545
PGIN242619:0:Tyes1057-10570
PHAL326442:1:Tyes01470323
PING357804:0:Tyes1668016681332
PINT246198:0:Tyes0-0-
PLUM243265:0:Fyes02175052
PLUT319225:0:Tyes878-8780
PMAR146891:0:Tyes0-01436
PMAR167539:0:Tyes0-01412
PMAR167540:0:Tyes0-01288
PMAR167542:0:Tyes0-01444
PMAR167546:0:Tyes0-01433
PMAR167555:0:Tyes0-01644
PMAR59920:0:Tno553--0
PMAR74546:0:Tyes0-01376
PMAR74547:0:Tyes72-720
PMAR93060:0:Tyes0-01528
PMEN399739:0:Tyes756136701528
PMOB403833:0:Tyes0-0-
PMUL272843:1:Tyes-0-1765
PNAP365044:8:Tyes3452177834520
PPEN278197:0:Tyes0-0-
PPRO298386:2:Tyes2370023702197
PPUT160488:0:Tno0309616763164
PPUT351746:0:Tyes05140591
PPUT76869:0:Tno0354217903660
PRUM264731:0:Tyes0-0-
PSP117:0:Tyes---0
PSP296591:2:Tyes4135210941350
PSP312153:0:Tyes0122301762
PSP56811:2:Tyes---0
PSTU379731:0:Tyes0181402255
PSYR205918:0:Tyes0284403002
PSYR223283:2:Tyes04750773
PTHE370438:0:Tyes0-0-
RAKA293614:0:Fyes-0-851
RALB246199:0:Tyes0-0-
RBEL336407:0:Tyes-0-191
RBEL391896:0:Fno-263-0
RCAN293613:0:Fyes-0-782
RCON272944:0:Tno-0-963
RDEN375451:4:Tyes0104
RETL347834:5:Tyes3230
REUT264198:3:Tyes2787177427870
REUT381666:2:Tyes2956185929560
RFEL315456:2:Tyes-0-76
RFER338969:1:Tyes0221503858
RLEG216596:6:Tyes4340
RMAS416276:1:Tyes-0-677
RMET266264:2:Tyes2974139329740
RPAL258594:0:Tyes2120
RPAL316055:0:Tyes2120
RPAL316056:0:Tyes2120
RPAL316057:0:Tyes2120
RPAL316058:0:Tyes0102
RPOM246200:1:Tyes04010
RPRO272947:0:Tyes-0-562
RRIC392021:0:Fno-0-920
RRIC452659:0:Tyes-0-945
RRUB269796:1:Tyes0607
RSAL288705:0:Tyes0-01722
RSOL267608:1:Tyes2494112524940
RSP357808:0:Tyes---0
RSPH272943:4:Tyes384380
RSPH349101:2:Tno374370
RSPH349102:5:Tyes43444340
RTYP257363:0:Tno-0-567
RXYL266117:0:Tyes10-100
SACI56780:0:Tyes0-0-
SALA317655:1:Tyes0102
SARE391037:0:Tyes0---
SAUR158878:1:Tno---0
SAUR158879:1:Tno---0
SAUR196620:0:Tno---0
SAUR273036:0:Tno---0
SAUR282458:0:Tno---0
SAUR282459:0:Tno---0
SAUR359786:1:Tno---0
SAUR359787:1:Tno---0
SAUR367830:3:Tno---0
SAUR418127:0:Tyes---0
SAUR426430:0:Tno---0
SAUR93061:0:Fno---0
SAUR93062:1:Tno---0
SBAL399599:3:Tyes2961029612195
SBAL402882:1:Tno2863028632085
SBOY300268:1:Tyes2195213310510
SDEG203122:0:Tyes0147602069
SDEN318161:0:Tyes010100629
SDYS300267:1:Tyes221821219880
SELO269084:0:Tyes257--0
SENT209261:0:Tno123211460761
SENT220341:0:Tno205319807650
SENT295319:0:Tno129711610732
SENT321314:2:Tno214220618890
SENT454169:2:Tno218120759070
SEPI176279:1:Tyes---0
SEPI176280:0:Tno---0
SERY405948:0:Tyes0---
SFLE198214:0:Tyes197719288720
SFLE373384:0:Tno1994-8080
SFUM335543:0:Tyes0-0114
SGLO343509:3:Tyes-1038-0
SGOR29390:0:Tyes0---
SHAE279808:0:Tyes---0
SHAL458817:0:Tyes2829028291958
SHIGELLA:0:Tno193318838940
SLAC55218:1:Fyes03920396
SLOI323850:0:Tyes0108802825
SMED366394:3:Tyes2120
SMEL266834:2:Tyes3230
SONE211586:1:Tyes011860879
SPEA398579:0:Tno0109303056
SPNE488221:0:Tno0---
SPRO399741:1:Tyes028890365
SRUB309807:1:Tyes496--0
SSAP342451:2:Tyes---0
SSED425104:0:Tyes2966029662166
SSON300269:1:Tyes215420569630
SSP1131:0:Tyes0-075
SSP1148:0:Tyes2045-20450
SSP292414:2:Tyes0105
SSP321327:0:Tyes0-01713
SSP321332:0:Tyes1112-11120
SSP387093:0:Tyes830-8300
SSP644076:7:Fyes4340
SSP64471:0:Tyes0--85
SSP84588:0:Tyes0-01907
SSP94122:1:Tyes3002203630020
STHE292459:0:Tyes0-0521
STRO369723:0:Tyes0---
STYP99287:1:Tyes217820388690
SWOL335541:0:Tyes0-0-
TCRU317025:0:Tyes1860186232
TDEN243275:0:Tyes--1290
TDEN292415:0:Tyes1960151119600
TDEN326298:0:Tyes0-0-
TELO197221:0:Tyes1538-15380
TERY203124:0:Tyes645-6450
TFUS269800:0:Tyes0--196
TLET416591:0:Tyes0-0-
TMAR243274:0:Tyes0-0-
TPET390874:0:Tno0-0-
TPSE340099:0:Tyes402-4020
TROS309801:1:Tyes0-0-
TSP1755:0:Tyes0-0394
TSP28240:0:Tyes0-0-
TTEN273068:0:Tyes0-0281
TTHE262724:1:Tyes---0
TTHE300852:2:Tyes---0
TTUR377629:0:Tyes1968241019680
UMET351160:0:Tyes---0
UPAR505682:0:Tyes--0-
UURE95664:0:Tyes--0-
UURE95667:0:Tno--0-
VCHO:0:Tyes03160414
VCHO345073:1:Tno02880376
VEIS391735:1:Tyes11034021100
VFIS312309:2:Tyes-1299-0
VPAR223926:1:Tyes19550195571
VVUL196600:2:Tyes20270202781
VVUL216895:1:Tno12537712530
WPIP80849:0:Tyes-325-0
WPIP955:0:Tyes-594-0
WSUC273121:0:Tyes0-0-
XAUT78245:1:Tyes41514150
XAXO190486:0:Tyes106984610690
XCAM190485:0:Tyes25102511984
XCAM314565:0:Tno1796205417960
XCAM316273:0:Tno22502252035
XCAM487884:0:Tno1815208218150
XFAS160492:2:Tno0228301208
XFAS183190:1:Tyes012900461
XFAS405440:0:Tno013540514
XORY291331:0:Tno93809381959
XORY342109:0:Tyes90909091856
XORY360094:0:Tno1522395515220
YENT393305:1:Tyes017202107
YPES187410:5:Tno022070295
YPES214092:3:Tno2101021011429
YPES349746:2:Tno04670935
YPES360102:3:Tyes2289022891951
YPES377628:2:Tno021480304
YPES386656:2:Tno460046064
YPSE273123:2:Tno03270278
YPSE349747:2:Tno343034362
ZMOB264203:0:Tyes0102



Back to top