CANDIDATE ID: 863

CANDIDATE ID: 863

NUMBER OF GENES: 4
AVERAGE SCORE:    9.9925067e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- EG12163 (rsmB) (b3289)
   Products of gene:
     - EG12163-MONOMER (16S rRNA m5C967 methyltransferase)
       Reactions:
        cytosine967 in 16S rRNA + S-adenosyl-L-methionine  ->  5-methylcytosine967 in 16S rRNA + S-adenosyl-L-homocysteine

- EG11604 (smf) (b3286 (obsolete))
   Products of gene:
     - EG11604-MONOMER (conserved protein)

- EG11440 (def) (b3287)
   Products of gene:
     - EG11440-MONOMER (peptide deformylase)
       Reactions:
        formyl-L-methionyl peptide + H2O  ->  methionyl peptide + formate + H+

- EG11260 (yifB) (b3765)
   Products of gene:
     - EG11260-MONOMER (predicted ATP-dependent protease)



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ORGANISMS CONTAINING AT LEAST 3 GENES FROM THE GROUP:

Total number of orgs: 326
Effective number of orgs (counting one per cluster within 468 clusters): 243

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM44
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317584
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329534
YPES386656 ncbi Yersinia pestis Pestoides F4
YPES377628 ncbi Yersinia pestis Nepal5164
YPES360102 ncbi Yersinia pestis Antiqua4
YPES349746 ncbi Yersinia pestis Angola4
YPES214092 ncbi Yersinia pestis CO924
YPES187410 ncbi Yersinia pestis KIM 104
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80814
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A4
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110184
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103314
XFAS405440 ncbi Xylella fastidiosa M124
XFAS183190 ncbi Xylella fastidiosa Temecula14
XFAS160492 ncbi Xylella fastidiosa 9a5c4
XCAM487884 Xanthomonas campestris pv. paulliniae4
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-104
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80044
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339134
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3064
XAUT78245 ncbi Xanthobacter autotrophicus Py24
WPIP955 Wolbachia pipientis3
VVUL216895 ncbi Vibrio vulnificus CMCP64
VVUL196600 ncbi Vibrio vulnificus YJ0164
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106334
VFIS312309 ncbi Vibrio fischeri ES1144
VEIS391735 ncbi Verminephrobacter eiseniae EF01-24
VCHO345073 ncbi Vibrio cholerae O3954
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169614
TTUR377629 ncbi Teredinibacter turnerae T79014
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB44
TSP28240 Thermotoga sp.4
TSP1755 Thermoanaerobacter sp.4
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332234
TPET390874 ncbi Thermotoga petrophila RKU-14
TMAR243274 ncbi Thermotoga maritima MSB84
TERY203124 ncbi Trichodesmium erythraeum IMS1013
TELO197221 ncbi Thermosynechococcus elongatus BP-13
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252594
TDEN243275 ncbi Treponema denticola ATCC 354053
TCRU317025 ncbi Thiomicrospira crunogena XCL-24
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen4
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT24
STHE292459 ncbi Symbiobacterium thermophilum IAM 148634
SSP94122 ncbi Shewanella sp. ANA-34
SSP644076 Silicibacter sp. TrichCH4B4
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)4
SSP321327 ncbi Synechococcus sp. JA-3-3Ab4
SSP292414 ncbi Ruegeria sp. TM10404
SSP1148 ncbi Synechocystis sp. PCC 68033
SSON300269 ncbi Shigella sonnei Ss0463
SSED425104 ncbi Shewanella sediminis HAW-EB34
SRUB309807 ncbi Salinibacter ruber DSM 138554
SPRO399741 ncbi Serratia proteamaculans 5684
SPEA398579 ncbi Shewanella pealeana ATCC 7003454
SONE211586 ncbi Shewanella oneidensis MR-14
SMEL266834 ncbi Sinorhizobium meliloti 10214
SMED366394 ncbi Sinorhizobium medicae WSM4194
SLOI323850 ncbi Shewanella loihica PV-44
SLAC55218 Ruegeria lacuscaerulensis4
SHIGELLA ncbi Shigella flexneri 2a str. 2457T3
SHAL458817 ncbi Shewanella halifaxensis HAW-EB44
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB4
SFLE373384 ncbi Shigella flexneri 5 str. 84014
SFLE198214 ncbi Shigella flexneri 2a str. 3013
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4764
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B674
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91504
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT183
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty23
SELO269084 ncbi Synechococcus elongatus PCC 63014
SDYS300267 ncbi Shigella dysenteriae Sd1973
SDEN318161 ncbi Shewanella denitrificans OS2174
SDEG203122 ncbi Saccharophagus degradans 2-404
SBOY300268 ncbi Shigella boydii Sb2274
SBAL402882 ncbi Shewanella baltica OS1854
SBAL399599 ncbi Shewanella baltica OS1954
SALA317655 ncbi Sphingopyxis alaskensis RB22564
SACI56780 ncbi Syntrophus aciditrophicus SB3
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170254
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170294
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.13
RSOL267608 ncbi Ralstonia solanacearum GMI10004
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111704
RPOM246200 ncbi Ruegeria pomeroyi DSS-33
RPAL316058 ncbi Rhodopseudomonas palustris HaA24
RPAL316057 ncbi Rhodopseudomonas palustris BisB54
RPAL316056 ncbi Rhodopseudomonas palustris BisB184
RPAL316055 ncbi Rhodopseudomonas palustris BisA534
RPAL258594 ncbi Rhodopseudomonas palustris CGA0094
RMET266264 ncbi Ralstonia metallidurans CH344
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38414
RFER338969 ncbi Rhodoferax ferrireducens T1184
RFEL315456 ncbi Rickettsia felis URRWXCal23
REUT381666 ncbi Ralstonia eutropha H164
REUT264198 ncbi Ralstonia eutropha JMP1344
RETL347834 ncbi Rhizobium etli CFN 424
RDEN375451 ncbi Roseobacter denitrificans OCh 1144
PTHE370438 ncbi Pelotomaculum thermopropionicum SI4
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30004
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a4
PSTU379731 ncbi Pseudomonas stutzeri A15014
PSP56811 Psychrobacter sp.4
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-13
PSP296591 ncbi Polaromonas sp. JS6664
PPUT76869 ncbi Pseudomonas putida GB-14
PPUT351746 ncbi Pseudomonas putida F14
PPUT160488 ncbi Pseudomonas putida KT24404
PPRO298386 ncbi Photobacterium profundum SS94
PNAP365044 ncbi Polaromonas naphthalenivorans CJ24
PMUL272843 ncbi Pasteurella multocida multocida Pm704
PMEN399739 ncbi Pseudomonas mendocina ymp4
PMAR93060 ncbi Prochlorococcus marinus MIT 92153
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO14
PING357804 ncbi Psychromonas ingrahamii 374
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1254
PFLU220664 ncbi Pseudomonas fluorescens Pf-54
PFLU216595 ncbi Pseudomonas fluorescens SBW254
PFLU205922 ncbi Pseudomonas fluorescens Pf0-14
PENT384676 ncbi Pseudomonas entomophila L484
PCRY335284 ncbi Psychrobacter cryohalolentis K54
PCAR338963 ncbi Pelobacter carbinolicus DSM 23804
PATL342610 ncbi Pseudoalteromonas atlantica T6c4
PARC259536 ncbi Psychrobacter arcticus 273-44
PAER208964 ncbi Pseudomonas aeruginosa PAO14
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA144
OTSU357244 ncbi Orientia tsutsugamushi Boryong3
OCAR504832 ncbi Oligotropha carboxidovorans OM54
OANT439375 ncbi Ochrobactrum anthropi ATCC 491884
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2554
NSP103690 ncbi Nostoc sp. PCC 71204
NOCE323261 ncbi Nitrosococcus oceani ATCC 197074
NMUL323848 ncbi Nitrosospira multiformis ATCC 251964
NMEN374833 ncbi Neisseria meningitidis 0534424
NMEN272831 ncbi Neisseria meningitidis FAM184
NMEN122587 ncbi Neisseria meningitidis Z24914
NMEN122586 ncbi Neisseria meningitidis MC584
NHAM323097 ncbi Nitrobacter hamburgensis X144
NGON242231 ncbi Neisseria gonorrhoeae FA 10904
NEUT335283 ncbi Nitrosomonas eutropha C914
NEUR228410 ncbi Nitrosomonas europaea ATCC 197184
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124444
MXAN246197 ncbi Myxococcus xanthus DK 16223
MTHE264732 ncbi Moorella thermoacetica ATCC 390734
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E4
MSP409 Methylobacterium sp.4
MSP400668 ncbi Marinomonas sp. MWYL14
MSP266779 ncbi Chelativorans sp. BNC14
MPET420662 ncbi Methylibium petroleiphilum PM14
MMAR394221 ncbi Maricaulis maris MCS104
MMAG342108 ncbi Magnetospirillum magneticum AMB-13
MLOT266835 ncbi Mesorhizobium loti MAFF3030994
MFLA265072 ncbi Methylobacillus flagellatus KT4
MEXT419610 ncbi Methylobacterium extorquens PA14
MCAP243233 ncbi Methylococcus capsulatus Bath4
MAQU351348 ncbi Marinobacter aquaeolei VT84
MAER449447 ncbi Microcystis aeruginosa NIES-8434
LPNE400673 ncbi Legionella pneumophila Corby4
LPNE297246 ncbi Legionella pneumophila Paris4
LPNE297245 ncbi Legionella pneumophila Lens4
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 14
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-003
LCHO395495 ncbi Leptothrix cholodnii SP-64
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785784
JSP375286 ncbi Janthinobacterium sp. Marseille4
JSP290400 ncbi Jannaschia sp. CCS14
ILOI283942 ncbi Idiomarina loihiensis L2TR4
HSOM228400 ncbi Haemophilus somnus 23364
HSOM205914 ncbi Haemophilus somnus 129PT4
HMOD498761 ncbi Heliobacterium modesticaldum Ice13
HINF71421 ncbi Haemophilus influenzae Rd KW204
HINF374930 ncbi Haemophilus influenzae PittEE4
HINF281310 ncbi Haemophilus influenzae 86-028NP4
HHAL349124 ncbi Halorhodospira halophila SL14
HDUC233412 ncbi Haemophilus ducreyi 35000HP3
HCHE349521 ncbi Hahella chejuensis KCTC 23964
HARS204773 ncbi Herminiimonas arsenicoxydans4
GVIO251221 ncbi Gloeobacter violaceus PCC 74213
GURA351605 ncbi Geobacter uraniireducens Rf44
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-23
GSUL243231 ncbi Geobacter sulfurreducens PCA4
GOXY290633 ncbi Gluconobacter oxydans 621H4
GMET269799 ncbi Geobacter metallireducens GS-154
GKAU235909 ncbi Geobacillus kaustophilus HTA4264
GBET391165 ncbi Granulibacter bethesdensis CGDNIH14
FTUL418136 ncbi Francisella tularensis tularensis WY96-34183
FTUL401614 ncbi Francisella novicida U1124
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250174
FMAG334413 ncbi Finegoldia magna ATCC 293283
ESP42895 Enterobacter sp.4
ERUM302409 ncbi Ehrlichia ruminantium Gardel3
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden3
ELIT314225 ncbi Erythrobacter litoralis HTCC25944
EFER585054 ncbi Escherichia fergusonii ATCC 354694
ECOO157 ncbi Escherichia coli O157:H7 EDL9334
ECOL83334 Escherichia coli O157:H74
ECOL585397 ncbi Escherichia coli ED1a4
ECOL585057 ncbi Escherichia coli IAI393
ECOL585056 ncbi Escherichia coli UMN0264
ECOL585055 ncbi Escherichia coli 559894
ECOL585035 ncbi Escherichia coli S884
ECOL585034 ncbi Escherichia coli IAI14
ECOL481805 ncbi Escherichia coli ATCC 87394
ECOL469008 ncbi Escherichia coli BL21(DE3)4
ECOL439855 ncbi Escherichia coli SMS-3-54
ECOL413997 ncbi Escherichia coli B str. REL6064
ECOL409438 ncbi Escherichia coli SE114
ECOL405955 ncbi Escherichia coli APEC O14
ECOL364106 ncbi Escherichia coli UTI894
ECOL362663 ncbi Escherichia coli 5364
ECOL331111 ncbi Escherichia coli E24377A4
ECOL316407 ncbi Escherichia coli K-12 substr. W31104
ECOL199310 ncbi Escherichia coli CFT0734
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10434
ECAN269484 ncbi Ehrlichia canis Jake3
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough3
DSP255470 ncbi Dehalococcoides sp. CBDB13
DSP216389 ncbi Dehalococcoides sp. BAV13
DSHI398580 ncbi Dinoroseobacter shibae DFL 124
DRED349161 ncbi Desulfotomaculum reducens MI-14
DPSY177439 ncbi Desulfotalea psychrophila LSv544
DOLE96561 ncbi Desulfococcus oleovorans Hxd34
DNOD246195 ncbi Dichelobacter nodosus VCS1703A4
DHAF138119 ncbi Desulfitobacterium hafniense Y514
DETH243164 ncbi Dehalococcoides ethenogenes 1953
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G203
DARO159087 ncbi Dechloromonas aromatica RCB4
CVIO243365 ncbi Chromobacterium violaceum ATCC 124724
CTET212717 ncbi Clostridium tetani E884
CTEP194439 ncbi Chlorobium tepidum TLS3
CSP78 Caulobacter sp.4
CSP501479 Citreicella sp. SE453
CSAL290398 ncbi Chromohalobacter salexigens DSM 30434
CPSY167879 ncbi Colwellia psychrerythraea 34H4
CPHY357809 ncbi Clostridium phytofermentans ISDg3
CPER289380 ncbi Clostridium perfringens SM1014
CPER195103 ncbi Clostridium perfringens ATCC 131244
CPER195102 ncbi Clostridium perfringens 134
CNOV386415 ncbi Clostridium novyi NT4
CKLU431943 ncbi Clostridium kluyveri DSM 5554
CJAP155077 Cellvibrio japonicus4
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29013
CDIF272563 ncbi Clostridium difficile 6304
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C3
CCHL340177 ncbi Chlorobium chlorochromatii CaD33
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1114
CBUR360115 ncbi Coxiella burnetii RSA 3313
CBUR227377 ncbi Coxiella burnetii RSA 4933
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto4
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6574
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B4
CBOT498213 ncbi Clostridium botulinum B1 str. Okra4
CBOT441772 ncbi Clostridium botulinum F str. Langeland4
CBOT441771 ncbi Clostridium botulinum A str. Hall4
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193974
CBOT36826 Clostridium botulinum A4
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80524
CAULO ncbi Caulobacter crescentus CB154
CACE272562 ncbi Clostridium acetobutylicum ATCC 8244
BWEI315730 ncbi Bacillus weihenstephanensis KBAB43
BVIE269482 ncbi Burkholderia vietnamiensis G44
BTRI382640 ncbi Bartonella tribocorum CIP 1054764
BTHU412694 ncbi Bacillus thuringiensis Al Hakam3
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-273
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54823
BTHA271848 ncbi Burkholderia thailandensis E2644
BSUI470137 ncbi Brucella suis ATCC 234454
BSUI204722 ncbi Brucella suis 13304
BSUB ncbi Bacillus subtilis subtilis 1683
BSP376 Bradyrhizobium sp.4
BSP36773 Burkholderia sp.4
BQUI283165 ncbi Bartonella quintana Toulouse3
BPUM315750 ncbi Bacillus pumilus SAFR-0323
BPSE320373 ncbi Burkholderia pseudomallei 6683
BPSE320372 ncbi Burkholderia pseudomallei 1710b4
BPSE272560 ncbi Burkholderia pseudomallei K962434
BPET94624 Bordetella petrii4
BPER257313 ncbi Bordetella pertussis Tohama I3
BPAR257311 ncbi Bordetella parapertussis 128224
BOVI236 Brucella ovis4
BMEL359391 ncbi Brucella melitensis biovar Abortus 23083
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M4
BMAL320389 ncbi Burkholderia mallei NCTC 102474
BMAL320388 ncbi Burkholderia mallei SAVP14
BMAL243160 ncbi Burkholderia mallei ATCC 233444
BLIC279010 ncbi Bacillus licheniformis ATCC 145803
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1104
BHEN283166 ncbi Bartonella henselae Houston-14
BCER572264 ncbi Bacillus cereus 03BB1023
BCER405917 Bacillus cereus W3
BCER315749 ncbi Bacillus cytotoxicus NVH 391-983
BCER288681 ncbi Bacillus cereus E33L3
BCER226900 ncbi Bacillus cereus ATCC 145793
BCEN331272 ncbi Burkholderia cenocepacia HI24244
BCEN331271 ncbi Burkholderia cenocepacia AU 10544
BCAN483179 ncbi Brucella canis ATCC 233654
BBRO257310 ncbi Bordetella bronchiseptica RB504
BBAC360095 ncbi Bartonella bacilliformis KC5834
BAMY326423 ncbi Bacillus amyloliquefaciens FZB423
BAMB398577 ncbi Burkholderia ambifaria MC40-64
BAMB339670 ncbi Burkholderia ambifaria AMMD4
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9413
AVAR240292 ncbi Anabaena variabilis ATCC 294134
ASP76114 ncbi Aromatoleum aromaticum EbN14
ASP62977 ncbi Acinetobacter sp. ADP14
ASP62928 ncbi Azoarcus sp. BH724
ASP232721 ncbi Acidovorax sp. JS424
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4494
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL034
APLE416269 ncbi Actinobacillus pleuropneumoniae L204
APHA212042 ncbi Anaplasma phagocytophilum HZ3
AORE350688 ncbi Alkaliphilus oremlandii OhILAs4
AMET293826 ncbi Alkaliphilus metalliredigens QYMF4
AMAR329726 ncbi Acaryochloris marina MBIC110173
AMAR234826 ncbi Anaplasma marginale St. Maries3
AHYD196024 Aeromonas hydrophila dhakensis4
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232704
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-14
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C3
ACRY349163 ncbi Acidiphilium cryptum JF-54
ACAU438753 ncbi Azorhizobium caulinodans ORS 5714
ABOR393595 ncbi Alcanivorax borkumensis SK24
ABAU360910 ncbi Bordetella avium 197N4
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3454
AAVE397945 ncbi Acidovorax citrulli AAC00-14


Names of the homologs of the genes in the group in each of these orgs
  EG12163   EG11604   EG11440   EG11260   
ZMOB264203 ZMO0017ZMO1194ZMO0813ZMO1624
YPSE349747 YPSIP31758_3884YPSIP31758_3881YPSIP31758_3882YPSIP31758_0153
YPSE273123 YPTB3667YPTB3664YPTB3665YPTB0133
YPES386656 YPDSF_0162YPDSF_0165YPDSF_0164YPDSF_3514
YPES377628 YPN_3829YPN_3826YPN_3827YPN_0065
YPES360102 YPA_3233YPA_3230YPA_3231YPA_0120
YPES349746 YPANGOLA_A0613YPANGOLA_A0616YPANGOLA_A0615YPANGOLA_A0481
YPES214092 YPO0240YPO0243YPO0242YPO3902
YPES187410 Y4021Y4024Y4023Y0334
YENT393305 YE3891YE3888YE3889YE0147
XORY360094 XOOORF_0698XOOORF_0694XOOORF_0696XOOORF_0205
XORY342109 XOO0548XOO0544XOO0546XOO0186
XORY291331 XOO0587XOO0583XOO0585XOO0212
XFAS405440 XFASM12_1927XFASM12_1931XFASM12_1929XFASM12_0521
XFAS183190 PD_1761PD_1765PD_1763PD_0464
XFAS160492 XF0928XF0924XF0926XF1179
XCAM487884 XCC-B100_3928XCC-B100_3932XCC-B100_3930XCC-B100_4061
XCAM316273 XCAORF_0559XCAORF_0554XCAORF_0556XCAORF_0412
XCAM314565 XC_3817XC_3821XC_3819XC_3959
XCAM190485 XCC3747XCC3751XCC3749XCC3874
XAXO190486 XAC3799XAC3803XAC3801XAC3931
XAUT78245 XAUT_0941XAUT_3916XAUT_3305XAUT_0335
WPIP955 WD_0092WD_0165WD_0721
VVUL216895 VV1_1046VV1_1050VV1_1048VV1_1033
VVUL196600 VV3227VV3223VV3225VV3239
VPAR223926 VP3044VP3040VP3042VP3057
VFIS312309 VF2545VF2541VF2543VF2555
VEIS391735 VEIS_2266VEIS_4084VEIS_4082VEIS_3316
VCHO345073 VC0395_A2475VC0395_A2471VC0395_A2473VC0395_A2487
VCHO VC0044VC0048VC0046VC0032
TTUR377629 TERTU_0035TERTU_0039TERTU_0037TERTU_4252
TTEN273068 TTE1503TTE1450TTE1507TTE1455
TSP28240 TRQ2_1406TRQ2_0698TRQ2_1168TRQ2_0424
TSP1755 TETH514_1752TETH514_1701TETH514_1757TETH514_1706
TPSE340099 TETH39_1316TETH39_1265TETH39_1320TETH39_1270
TPET390874 TPET_1280TPET_0674TPET_1130TPET_0409
TMAR243274 TM_1512TM_0250TM_1661TM_0513
TERY203124 TERY_0744TERY_2933TERY_4765
TELO197221 TLR0209TLR1431TLR0594
TDEN292415 TBD_0016TBD_0012TBD_0014TBD_0237
TDEN243275 TDE_1207TDE_1645TDE_1995
TCRU317025 TCR_0191TCR_0194TCR_0193TCR_0202
SWOL335541 SWOL_1228SWOL_0839SWOL_1232SWOL_1445
STYP99287 STM3408STM3405STM3406STM3899
STHE292459 STH1349STH1480STH1343STH1476
SSP94122 SHEWANA3_0033SHEWANA3_0037SHEWANA3_0035SHEWANA3_3820
SSP644076 SCH4B_3469SCH4B_2498SCH4B_2759SCH4B_1297
SSP321332 CYB_1963CYB_0678CYB_2769CYB_2718
SSP321327 CYA_1094CYA_2512CYA_0120CYA_2021
SSP292414 TM1040_0089TM1040_2338TM1040_2580TM1040_0452
SSP1148 SLR0679SLR1197SLR0904
SSON300269 SSO_3429SSO_3426SSO_3427
SSED425104 SSED_0033SSED_0037SSED_0035SSED_4171
SRUB309807 SRU_0884SRU_1187SRU_1291SRU_1589
SPRO399741 SPRO_4513SPRO_4510SPRO_4511SPRO_4762
SPEA398579 SPEA_0029SPEA_0033SPEA_0031SPEA_0332
SONE211586 SO_0030SO_0034SO_0032SO_0349
SMEL266834 SMC04090SMC01363SMC01101SMC00420
SMED366394 SMED_3191SMED_0933SMED_0054SMED_3547
SLOI323850 SHEW_3738SHEW_3734SHEW_3736SHEW_0283
SLAC55218 SL1157_1320SL1157_0168SL1157_1868SL1157_0586
SHIGELLA SUNSMFDEF
SHAL458817 SHAL_0025SHAL_0029SHAL_0027SHAL_3959
SFUM335543 SFUM_0150SFUM_0212SFUM_0147SFUM_2637
SFLE373384 SFV_3308SFV_3305SFV_3306SFV_3735
SFLE198214 AAN44783.1AAN44780.1AAN44781.1
SENT454169 SEHA_C3712SEHA_C3709SEHA_C3710SEHA_C4231
SENT321314 SCH_3344SCH_3341SCH_3342SCH_3806
SENT295319 SPA3275SPA3272SPA3273SPA3738
SENT220341 STY4389STY4392STY4391
SENT209261 T4096T4099T4098
SELO269084 SYC0580_DSYC0827_CSYC0213_DSYC0164_C
SDYS300267 SDY_3465SDY_3462SDY_3463
SDEN318161 SDEN_0022SDEN_0026SDEN_0024SDEN_3421
SDEG203122 SDE_0019SDE_0023SDE_0021SDE_0215
SBOY300268 SBO_3282SBO_3279SBO_3280SBO_3777
SBAL402882 SHEW185_0025SHEW185_0029SHEW185_0027SHEW185_4016
SBAL399599 SBAL195_0029SBAL195_0033SBAL195_0031SBAL195_4135
SALA317655 SALA_1047SALA_1209SALA_0251SALA_0021
SACI56780 SYN_02708SYN_02797SYN_03153
RSPH349102 RSPH17025_2926RSPH17025_2317RSPH17025_0148RSPH17025_3056
RSPH349101 RSPH17029_2765RSPH17029_0849RSPH17029_2532RSPH17029_0463
RSPH272943 RSP_2177RSP_0872RSP_1816
RSOL267608 RSC0075RSC0068RSC0070RSC0338
RRUB269796 RRU_A3660RRU_A3194RRU_A3350RRU_A3589
RPOM246200 SPO_3078SPO_3219SPO_0402
RPAL316058 RPB_0086RPB_2421RPB_0673RPB_0415
RPAL316057 RPD_0717RPD_3031RPD_0081RPD_0405
RPAL316056 RPC_0025RPC_2244RPC_0803RPC_0317
RPAL316055 RPE_0028RPE_3377RPE_0656RPE_0360
RPAL258594 RPA0030RPA3120RPA0621RPA0318
RMET266264 RMET_3562RMET_3567RMET_3565RMET_0237
RLEG216596 RL4724RL1736RL0430RL0339
RFER338969 RFER_3590RFER_3862RFER_3860RFER_0471
RFEL315456 RF_0531RF_0324RF_0518
REUT381666 H16_A3697H16_A3702H16_A3700H16_A0317
REUT264198 REUT_A3405REUT_A3410REUT_A3408REUT_A0288
RETL347834 RHE_CH04109RHE_CH01639RHE_CH00412RHE_CH00323
RDEN375451 RD1_0653RD1_2132RD1_1337RD1_1193
PTHE370438 PTH_1788PTH_1245PTH_1791PTH_1690
PSYR223283 PSPTO_0179PSPTO_0175PSPTO_0177PSPTO_0042
PSYR205918 PSYR_0017PSYR_0021PSYR_0019PSYR_0197
PSTU379731 PST_0019PST_0023PST_0021PST_0500
PSP56811 PSYCPRWF_2382PSYCPRWF_2377PSYCPRWF_0042PSYCPRWF_2359
PSP312153 PNUC_2077PNUC_2080PNUC_2079
PSP296591 BPRO_4436BPRO_4641BPRO_4639BPRO_0181
PPUT76869 PPUTGB1_0082PPUTGB1_0085PPUTGB1_0084PPUTGB1_5300
PPUT351746 PPUT_0082PPUT_0085PPUT_0084PPUT_5149
PPUT160488 PP_0066PP_0069PP_0068PP_5239
PPRO298386 PBPRA3581PBPRA3577PBPRA3579PBPRA3592
PNAP365044 PNAP_3632PNAP_3881PNAP_3878PNAP_0119
PMUL272843 PM1561PM1599PM1559PM1510
PMEN399739 PMEN_0053PMEN_0057PMEN_0055PMEN_0257
PMAR93060 P9215_05051P9215_12681P9215_00801
PLUM243265 PLU4697PLU4694PLU4695PLU4686
PING357804 PING_0080PING_0076PING_0078PING_0392
PHAL326442 PSHAA0021PSHAA0025PSHAA0023PSHAA0130
PFLU220664 PFL_0020PFL_0024PFL_0022PFL_6022
PFLU216595 PFLU0016PFLU0020PFLU0018PFLU5956
PFLU205922 PFL_0015PFL_0019PFL_0017PFL_5508
PENT384676 PSEEN0023PSEEN0026PSEEN0025PSEEN5385
PCRY335284 PCRYO_2466PCRYO_2463PCRYO_0038PCRYO_2447
PCAR338963 PCAR_0241PCAR_0408PCAR_0245PCAR_0115
PATL342610 PATL_0021PATL_0025PATL_0023PATL_4252
PARC259536 PSYC_2138PSYC_2135PSYC_0030PSYC_2125
PAER208964 PA0017PA0021PA0019PA5290
PAER208963 PA14_00180PA14_00230PA14_00200PA14_69840
OTSU357244 OTBS_1123OTBS_1849OTBS_1607
OCAR504832 OCAR_4335OCAR_5785OCAR_7540OCAR_4405
OANT439375 OANT_1089OANT_3669OANT_1344OANT_0782
NWIN323098 NWI_0156NWI_2010NWI_3064NWI_0118
NSP103690 ALR0820ALL1325ALR3079ALR4088
NOCE323261 NOC_3016NOC_3012NOC_3014NOC_2003
NMUL323848 NMUL_A0392NMUL_A0395NMUL_A0394NMUL_A0106
NMEN374833 NMCC_2036NMCC_2032NMCC_2039NMCC_1741
NMEN272831 NMC0104NMC0108NMC0102NMC1763
NMEN122587 NMA0162NMA0158NMA0164NMA2080
NMEN122586 NMB_0112NMB_0116NMB_0110NMB_0405
NHAM323097 NHAM_0197NHAM_2285NHAM_3693NHAM_0130
NGON242231 NGO1869NGO1865NGO1871NGO1550
NEUT335283 NEUT_0390NEUT_0394NEUT_0392NEUT_2377
NEUR228410 NE1972NE1968NE1970NE0193
NARO279238 SARO_3096SARO_1801SARO_2896SARO_0276
MXAN246197 MXAN_1401MXAN_1430MXAN_1443
MTHE264732 MOTH_0900MOTH_1025MOTH_0897MOTH_1022
MSUC221988 MS2203MS0041MS2201MS1998
MSP409 M446_2963M446_4345M446_4240M446_0209
MSP400668 MMWYL1_0015MMWYL1_0018MMWYL1_0017MMWYL1_3653
MSP266779 MESO_3418MESO_1356MESO_0394MESO_3583
MPET420662 MPE_A0272MPE_A0281MPE_A0283MPE_A0170
MMAR394221 MMAR10_2924MMAR10_1716MMAR10_0442MMAR10_3017
MMAG342108 AMB0147AMB0681AMB0243
MLOT266835 MLR4098MLR0689MLL4855MLL4667
MFLA265072 MFLA_0184MFLA_0189MFLA_0187MFLA_2510
MEXT419610 MEXT_0551MEXT_3315MEXT_1636MEXT_1923
MCAP243233 MCA_2845MCA_2841MCA_2843MCA_2139
MAQU351348 MAQU_0041MAQU_0045MAQU_0043MAQU_0525
MAER449447 MAE_52350MAE_02780MAE_14510MAE_17440
LPNE400673 LPC_0549LPC_0545LPC_0547LPC_2712
LPNE297246 LPP2646LPP2650LPP2648LPP0640
LPNE297245 LPL2516LPL2520LPL2518LPL0624
LPNE272624 LPG2593LPG2597LPG2595LPG0590
LINT363253 LI0110LI0767LI0751
LCHO395495 LCHO_4003LCHO_0348LCHO_0350LCHO_3943
KPNE272620 GKPORF_B3029GKPORF_B3026GKPORF_B3027GKPORF_B3610
JSP375286 MMA_0158MMA_0141MMA_0143MMA_0164
JSP290400 JANN_4040JANN_3158JANN_0466JANN_0902
ILOI283942 IL0016IL0019IL0018IL0215
HSOM228400 HSM_1932HSM_0737HSM_1934HSM_0202
HSOM205914 HS_0039HS_0412HS_0041HS_0331
HMOD498761 HM1_2210HM1_2132HM1_2208
HINF71421 HI_0624HI_0985HI_0622HI_1117
HINF374930 CGSHIEE_09110CGSHIEE_07040CGSHIEE_09120CGSHIEE_06465
HINF281310 NTHI0723NTHI1157NTHI0725NTHI1282
HHAL349124 HHAL_2321HHAL_2324HHAL_2323HHAL_2404
HDUC233412 HD_1992HD_1888HD_1889
HCHE349521 HCH_00028HCH_00032HCH_00030HCH_06394
HARS204773 HEAR0133HEAR0116HEAR0118HEAR0139
GVIO251221 GLL1761GLL2228GLR0476
GURA351605 GURA_0193GURA_3690GURA_0818GURA_4031
GTHE420246 GTNG_1026GTNG_1063GTNG_1024
GSUL243231 GSU_3373GSU_2550GSU_0129GSU_0489
GOXY290633 GOX1597GOX1264GOX1836GOX0066
GMET269799 GMET_0066GMET_0890GMET_3338GMET_3069
GKAU235909 GK1173GK1210GK1171GK3288
GBET391165 GBCGDNIH1_1754GBCGDNIH1_0805GBCGDNIH1_0693GBCGDNIH1_0976
FTUL418136 FTW_0506FTW_1356FTW_1942
FTUL401614 FTN_1347FTN_0345FTN_0110FTN_1665
FPHI484022 FPHI_1340FPHI_0479FPHI_0717FPHI_0944
FMAG334413 FMG_0797FMG_0661FMG_0068
ESP42895 ENT638_3720ENT638_3717ENT638_3718ENT638_4016
ERUM302409 ERGA_CDS_02120ERGA_CDS_00440ERGA_CDS_05090
ERUM254945 ERWE_CDS_02160ERWE_CDS_00450ERWE_CDS_05180
ELIT314225 ELI_11295ELI_04800ELI_02080ELI_10655
EFER585054 EFER_3272EFER_3269EFER_3270EFER_3736
ECOO157 SUNSMFDEFYIFB
ECOL83334 ECS4154ECS4151ECS4152ECS4700
ECOL585397 ECED1_3952ECED1_3949ECED1_3950ECED1_4453
ECOL585057 ECIAI39_3783ECIAI39_3781ECIAI39_3019
ECOL585056 ECUMN_3762ECUMN_3759ECUMN_3760ECUMN_4293
ECOL585055 EC55989_3705EC55989_3702EC55989_3703EC55989_4239
ECOL585035 ECS88_3676ECS88_3673ECS88_3674ECS88_4189
ECOL585034 ECIAI1_3438ECIAI1_3435ECIAI1_3436ECIAI1_3953
ECOL481805 ECOLC_0425ECOLC_0428ECOLC_0427ECOLC_4236
ECOL469008 ECBD_0463ECBD_0466ECBD_0465ECBD_4272
ECOL439855 ECSMS35_3584ECSMS35_3581ECSMS35_3582ECSMS35_4133
ECOL413997 ECB_03139ECB_03136ECB_03137ECB_03644
ECOL409438 ECSE_3563ECSE_3560ECSE_3561ECSE_4048
ECOL405955 APECO1_3158APECO1_3161APECO1_3160APECO1_2704
ECOL364106 UTI89_C3733UTI89_C3730UTI89_C3731UTI89_C4322
ECOL362663 ECP_3376ECP_3373ECP_3374ECP_3961
ECOL331111 ECE24377A_3771ECE24377A_3768ECE24377A_3769ECE24377A_4278
ECOL316407 ECK3275:JW3250:B3289ECK3272:JW5708:B4473ECK3273:JW3248:B3287ECK3758:JW3738:B3765
ECOL199310 C4049C4046C4047C4687
ECAR218491 ECA4001ECA3998ECA3999ECA4230
ECAN269484 ECAJ_0217ECAJ_0043ECAJ_0502
DVUL882 DVU_2069DVU_3366DVU_0710
DSP255470 CBDBA675CBDBA733CBDBA950
DSP216389 DEHABAV1_0653DEHABAV1_0687DEHABAV1_0877
DSHI398580 DSHI_3033DSHI_1138DSHI_0179DSHI_2828
DRED349161 DRED_1707DRED_1985DRED_1704DRED_2023
DPSY177439 DP0124DP0794DP0746DP2268
DOLE96561 DOLE_2231DOLE_2444DOLE_2233DOLE_2735
DNOD246195 DNO_0158DNO_0154DNO_0156DNO_0203
DHAF138119 DSY2692DSY2555DSY2694DSY2570
DETH243164 DET_0718DET_0760DET_0986
DDES207559 DDE_1581DDE_0013DDE_2773
DARO159087 DARO_0028DARO_0019DARO_0021DARO_0050
CVIO243365 CV_4262CV_4267CV_4265CV_4000
CTET212717 CTC_01222CTC_01258CTC_01219CTC_01257
CTEP194439 CT_0603CT_0255CT_1641
CSP78 CAUL_4779CAUL_1508CAUL_4570CAUL_0179
CSP501479 CSE45_0977CSE45_0263CSE45_4347
CSAL290398 CSAL_2869CSAL_2865CSAL_2867CSAL_3159
CPSY167879 CPS_0018CPS_0022CPS_0020CPS_4841
CPHY357809 CPHY_2723CPHY_2492CPHY_2724
CPER289380 CPR_1712CPR_1675CPR_1715CPR_1676
CPER195103 CPF_1994CPF_1957CPF_1997CPF_1958
CPER195102 CPE1741CPE1703CPE1744CPE1704
CNOV386415 NT01CX_2242NT01CX_2152NT01CX_2245NT01CX_2204
CKLU431943 CKL_1372CKL_1414CKL_1369CKL_1411
CJAP155077 CJA_3580CJA_3585CJA_3582CJA_3394
CHYD246194 CHY_1481CHY_1795CHY_1484
CDIF272563 CD2581CD1273CD2585CD1272
CDES477974 DAUD_1591DAUD_0599DAUD_0820
CCHL340177 CAG_1119CAG_1447CAG_1757
CBUR434922 COXBU7E912_0205COXBU7E912_2098COXBU7E912_1053COXBU7E912_2123
CBUR360115 COXBURSA331_A2118COXBURSA331_A0088COXBURSA331_A0945
CBUR227377 CBU_1915CBU_1998CBU_0993
CBOT536232 CLM_2807CLM_2731CLM_2810CLM_2732
CBOT515621 CLJ_B2737CLJ_B2663CLJ_B2740CLJ_B2664
CBOT508765 CLL_A1218CLL_A1255CLL_A1215CLL_A1254
CBOT498213 CLD_2130CLD_2202CLD_2127CLD_2201
CBOT441772 CLI_2568CLI_2494CLI_2571CLI_2495
CBOT441771 CLC_2362CLC_2286CLC_2365CLC_2287
CBOT441770 CLB_2380CLB_2302CLB_2383CLB_2303
CBOT36826 CBO2507CBO2438CBO2510CBO2439
CBEI290402 CBEI_1148CBEI_1185CBEI_1145CBEI_1184
CAULO CC0102CC2447CC0272CC0140
CACE272562 CAC1725CAC1784CAC1722CAC1765
BWEI315730 BCERKBAB4_3688BCERKBAB4_3657BCERKBAB4_3690
BVIE269482 BCEP1808_3282BCEP1808_3287BCEP1808_3286BCEP1808_2968
BTRI382640 BT_2570BT_1136BT_0079BT_0043
BTHU412694 BALH_3496BALH_3465BALH_3498
BTHU281309 BT9727_3606BT9727_3575BT9727_3608
BTHE226186 BT_3070BT_0420BT_2846
BTHA271848 BTH_I0132BTH_I0127BTH_I0128BTH_I0405
BSUI470137 BSUIS_B1292BSUIS_B0599BSUIS_B1030BSUIS_A1972
BSUI204722 BR_1814BR_A0602BR_A1035BR_2132
BSUB BSU15740BSU16110BSU15720
BSP376 BRADO0340BRADO4506BRADO0770BRADO0221
BSP36773 BCEP18194_A6474BCEP18194_A6479BCEP18194_A6478BCEP18194_A6197
BQUI283165 BQ06410BQ00690BQ00390
BPUM315750 BPUM_1473BPUM_1509BPUM_1471
BPSE320373 BURPS668_0155BURPS668_0150BURPS668_0466
BPSE320372 BURPS1710B_A0374BURPS1710B_A0366BURPS1710B_A0368BURPS1710B_A0691
BPSE272560 BPSL0125BPSL0120BPSL0121BPSL0432
BPET94624 BPET4711BPET4728BPET4727BPET2644
BPER257313 BP0569BP0555BP0552
BPAR257311 BPP0259BPP0240BPP0243BPP2595
BOVI236 GBOORF1819GBOORFA0620GBOORFA1069GBOORF2125
BMEL359391 BAB1_1822BAB2_0638BAB2_0997
BMEL224914 BMEI0235BMEII0667BMEII0264BMEI1994
BMAL320389 BMA10247_2357BMA10247_2350BMA10247_2352BMA10247_2825
BMAL320388 BMASAVP1_A2801BMASAVP1_A2808BMASAVP1_A2806BMASAVP1_A0195
BMAL243160 BMA_0146BMA_0141BMA_0142BMA_3220
BLIC279010 BL02299BL01283BL02297
BJAP224911 BLR0579BLR5104BLL8109BLL0661
BHEN283166 BH15990BH08170BH00760BH00440
BCER572264 BCA_3965BCA_3933BCA_3967
BCER405917 BCE_3907BCE_3876BCE_3910
BCER315749 BCER98_2517BCER98_2486BCER98_2519
BCER288681 BCE33L3624BCE33L3593BCE33L3626
BCER226900 BC_3863BC_3832BC_3865
BCEN331272 BCEN2424_3123BCEN2424_3128BCEN2424_3127BCEN2424_2868
BCEN331271 BCEN_2509BCEN_2514BCEN_2513BCEN_2254
BCAN483179 BCAN_A1852BCAN_B0603BCAN_B1055BCAN_A2177
BBRO257310 BB0262BB0244BB0247BB2037
BBAC360095 BARBAKC583_0072BARBAKC583_0842BARBAKC583_1319BARBAKC583_1345
BAMY326423 RBAM_015570RBAM_015940RBAM_015550
BAMB398577 BAMMC406_3061BAMMC406_3066BAMMC406_3065BAMMC406_2785
BAMB339670 BAMB_3178BAMB_3183BAMB_3182BAMB_2923
BABO262698 BRUAB1_1794BRUAB2_0622BRUAB2_0975
AVAR240292 AVA_4428AVA_3792AVA_0830AVA_0816
ASP76114 EBA2833EBA2961EBB91EBA3157
ASP62977 ACIAD3638ACIAD0209ACIAD0211ACIAD0242
ASP62928 AZO3985AZO0097AZO0099AZO3736
ASP232721 AJS_3894AJS_4049AJS_4051AJS_0161
ASAL382245 ASA_4142ASA_4138ASA_4140ASA_0118
APLE434271 APJL_1588APJL_1744APJL_1743APJL_1782
APLE416269 APL_1560APL_1712APL_1711APL_1747
APHA212042 APH_0933APH_1372APH_0754
AORE350688 CLOS_1431CLOS_1473CLOS_1427CLOS_1472
AMET293826 AMET_2782AMET_2736AMET_2786AMET_2737
AMAR329726 AM1_5613AM1_4662AM1_1360
AMAR234826 AM334AM1236AM626
AHYD196024 AHA_0256AHA_0260AHA_0258AHA_4206
AFER243159 AFE_3003AFE_3007AFE_3005AFE_0595
AEHR187272 MLG_2626MLG_2630MLG_2628MLG_0082
ADEH290397 ADEH_2700ADEH_0725ADEH_3623
ACRY349163 ACRY_2654ACRY_0730ACRY_0409ACRY_2620
ACAU438753 AZC_4698AZC_2848AZC_0798AZC_4342
ABOR393595 ABO_0129ABO_0133ABO_0131ABO_2532
ABAU360910 BAV0228BAV0198BAV0202BAV2070
ABAC204669 ACID345_4229ACID345_3341ACID345_4287ACID345_3233
AAVE397945 AAVE_4528AAVE_4686AAVE_4688AAVE_0231


Organism features enriched in list (features available for 306 out of the 326 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Endospores:No 1.055e-2551211
Endospores:Yes 0.00334443753
GC_Content_Range4:0-40 1.059e-2157213
GC_Content_Range4:40-60 6.348e-10153224
GC_Content_Range4:60-100 0.000049096145
GC_Content_Range7:0-30 0.00806421747
GC_Content_Range7:30-40 1.326e-1840166
GC_Content_Range7:50-60 2.732e-983107
GC_Content_Range7:60-70 4.522e-795134
GC_Content_Range7:70-100 0.0031579111
Genome_Size_Range5:0-2 1.434e-2725155
Genome_Size_Range5:4-6 2.460e-20147184
Genome_Size_Range5:6-10 0.00076953547
Genome_Size_Range9:1-2 5.387e-1825128
Genome_Size_Range9:2-3 0.000735048120
Genome_Size_Range9:3-4 0.00333475177
Genome_Size_Range9:4-5 6.728e-107796
Genome_Size_Range9:5-6 1.022e-87088
Genome_Size_Range9:6-8 0.00009543138
Gram_Stain:Gram_Neg 3.571e-26237333
Gram_Stain:Gram_Pos 1.874e-1439150
Habitat:Host-associated 0.000084487206
Habitat:Multiple 0.0002615112178
Habitat:Specialized 0.00459171953
Habitat:Terrestrial 0.00066152531
Motility:No 1.111e-2031151
Motility:Yes 4.141e-13183267
Optimal_temp.:- 0.0017877151257
Optimal_temp.:25-30 3.648e-61919
Optimal_temp.:35-37 0.00020281313
Shape:Coccobacillus 0.00076351111
Shape:Coccus 1.977e-101782
Shape:Irregular_coccus 0.0004561217
Shape:Rod 2.055e-22239347
Shape:Sphere 0.0008095319
Shape:Spiral 0.0000155634
Temp._range:Hyperthermophilic 0.0003935423
Temp._range:Psychrophilic 0.002856699



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 172
Effective number of orgs (counting one per cluster within 468 clusters): 142

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
WPIP80849 Wolbachia endosymbiont of Brugia malayi1
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/271
TWHI203267 ncbi Tropheryma whipplei Twist1
TVOL273116 ncbi Thermoplasma volcanium GSS10
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols1
TKOD69014 ncbi Thermococcus kodakarensis KOD11
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
STOK273063 ncbi Sulfolobus tokodaii 70
SSUI391295 ncbi Streptococcus suis 05ZYH331
SSOL273057 ncbi Sulfolobus solfataricus P20
SMAR399550 ncbi Staphylothermus marinus F11
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23381
SCO ncbi Streptomyces coelicolor A3(2)1
SAUR359787 ncbi Staphylococcus aureus aureus JH11
SAUR359786 ncbi Staphylococcus aureus aureus JH91
SARE391037 ncbi Salinispora arenicola CNS-2050
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RTYP257363 ncbi Rickettsia typhi Wilmington1
RSP101510 ncbi Rhodococcus jostii RHA11
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332091
RRIC452659 ncbi Rickettsia rickettsii Iowa1
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith1
RPRO272947 ncbi Rickettsia prowazekii Madrid E1
RMAS416276 ncbi Rickettsia massiliae MTU51
RCON272944 ncbi Rickettsia conorii Malish 71
RCAN293613 ncbi Rickettsia canadensis McKiel1
RALB246199 Ruminococcus albus 81
RAKA293614 ncbi Rickettsia akari Hartford1
PTOR263820 ncbi Picrophilus torridus DSM 97900
PRUM264731 ncbi Prevotella ruminicola 231
PMAR74547 ncbi Prochlorococcus marinus MIT 93131
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 171
PHOR70601 ncbi Pyrococcus horikoshii OT31
PGIN242619 ncbi Porphyromonas gingivalis W831
PDIS435591 ncbi Parabacteroides distasonis ATCC 85031
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PAER178306 ncbi Pyrobaculum aerophilum IM20
PACN267747 ncbi Propionibacterium acnes KPA1712021
PABY272844 ncbi Pyrococcus abyssi GE51
NSP387092 ncbi Nitratiruptor sp. SB155-21
NSEN222891 ncbi Neorickettsia sennetsu Miyayama1
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-11
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra1
MTUB336982 ncbi Mycobacterium tuberculosis F111
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MTBRV ncbi Mycobacterium tuberculosis H37Rv1
MTBCDC ncbi Mycobacterium tuberculosis CDC15511
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSP189918 ncbi Mycobacterium sp. KMS1
MSP164757 ncbi Mycobacterium sp. JLS1
MSP164756 ncbi Mycobacterium sp. MCS1
MSME246196 ncbi Mycobacterium smegmatis MC2 1551
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV191
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK1
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P21
MBOV233413 ncbi Mycobacterium bovis AF2122/971
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MAVI243243 ncbi Mycobacterium avium 1041
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
MABS561007 ncbi Mycobacterium abscessus ATCC 199771
LXYL281090 ncbi Leifsonia xyli xyli CTCB071
LLAC272623 ncbi Lactococcus lactis lactis Il14030
LLAC272622 ncbi Lactococcus lactis cremoris SK111
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1301
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566011
LHEL405566 ncbi Lactobacillus helveticus DPC 45711
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118421
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3651
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1970
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5500
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)1
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)1
LACI272621 ncbi Lactobacillus acidophilus NCFM1
KRAD266940 ncbi Kineococcus radiotolerans SRS302161
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSAL478009 ncbi Halobacterium salinarum R10
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMAR272569 ncbi Haloarcula marismortui ATCC 430490
HBUT415426 ncbi Hyperthermus butylicus DSM 54561
GFOR411154 ncbi Gramella forsetii KT08031
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-001
FTUL393011 ncbi Francisella tularensis holarctica OSU181
FTUL351581 Francisella tularensis holarctica FSC2001
FSP1855 Frankia sp. EAN1pec1
FSP106370 ncbi Frankia sp. CcI31
FJOH376686 ncbi Flavobacterium johnsoniae UW1011
FALN326424 ncbi Frankia alni ACN14a1
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA1
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10621
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3821
CMIC31964 ncbi Clavibacter michiganensis sepedonicus1
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CJEJ407148 ncbi Campylobacter jejuni jejuni 811161
CJEJ360109 ncbi Campylobacter jejuni doylei 269.971
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1761
CJEJ195099 ncbi Campylobacter jejuni RM12211
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111681
CJEI306537 ncbi Corynebacterium jeikeium K4111
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN1
CBLO203907 ncbi Candidatus Blochmannia floridanus1
CABO218497 ncbi Chlamydophila abortus S26/30
BXEN266265 ncbi Burkholderia xenovorans LB4000
BTUR314724 ncbi Borrelia turicatae 91E1351
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)1
BLON206672 ncbi Bifidobacterium longum NCC27051
BHER314723 ncbi Borrelia hermsii DAH1
BGAR290434 ncbi Borrelia garinii PBi1
BFRA295405 ncbi Bacteroides fragilis YCH461
BFRA272559 ncbi Bacteroides fragilis NCTC 93431
BCIC186490 Candidatus Baumannia cicadellinicola1
BBUR224326 ncbi Borrelia burgdorferi B311
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)1
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)1
BAFZ390236 ncbi Borrelia afzelii PKo1
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP1667 Arthrobacter sp.1
APER272557 ncbi Aeropyrum pernix K10
ANAE240017 Actinomyces oris MG11
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
ACEL351607 ncbi Acidothermus cellulolyticus 11B1
AAUR290340 ncbi Arthrobacter aurescens TC11


Names of the homologs of the genes in the group in each of these orgs
  EG12163   EG11604   EG11440   EG11260   
WPIP80849 WB_0187
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496 TW0293
TWHI203267 TW454
TVOL273116
TPEN368408
TPAL243276 TP_0393
TKOD69014 TK1935
TACI273075
STOK273063
SSUI391295 SSU05_0426
SSOL273057
SMAR399550 SMAR_0376
SERY405948 SACE_6044
SCO SCO5603
SAUR359787 SAURJH1_1301
SAUR359786 SAURJH9_1276
SARE391037
SACI330779
RTYP257363 RT0197
RSP101510 RHA1_RO06552
RSAL288705 RSAL33209_1091
RRIC452659 RRIOWA_0336
RRIC392021 A1G_01595
RPRO272947 RP208
RMAS416276 RMA_0279
RCON272944 RC0278
RCAN293613 A1E_01200
RALB246199 GRAORF_3226
RAKA293614 A1C_01560
PTOR263820
PRUM264731 GFRORF2388
PMAR74547 PMT0270
PISL384616
PINT246198 PIN_A0578
PHOR70601 PH0851
PGIN242619 PG_1768
PDIS435591 BDI_2803
PAST100379
PARS340102
PAER178306
PACN267747 PPA1430
PABY272844 PAB0830
NSP387092 NIS_0166
NSEN222891 NSE_0068
NPHA348780
MVAN350058 MVAN_2203
MTUB419947 MRA_2922
MTUB336982 TBFG_12911
MTHE349307
MTHE187420
MTBRV RV2897C
MTBCDC MT2965
MSYN262723
MSTA339860
MSP189918 MKMS_2032
MSP164757 MJLS_1966
MSP164756 MMCS_1986
MSME246196 MSMEG_2509
MSED399549
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR368407
MMAR267377
MLEP272631
MLAB410358
MKAN190192 MK1539
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGIL350054 MFLV_4139
MGEN243273
MFLO265311
MCAP340047
MBUR259564
MBOV410289 BCG_2918C
MBOV233413 MB2921C
MBAR269797
MAVI243243 MAV_3751
MART243272
MAEO419665
MACE188937
MABS561007 MAB_3213C
LXYL281090 LXX14780
LLAC272623
LLAC272622 LACR_1305
LINT267671 LIC_11566
LINT189518 LA2379
LHEL405566 LHV_1073
LDEL390333 LDB1274
LDEL321956 LBUL_1191
LBOR355277
LBOR355276
LBIF456481 LEPBI_I1671
LBIF355278 LBF_1621
LACI272621 LBA0980
KRAD266940 KRAD_1408
IHOS453591
HWAL362976
HSP64091
HSAL478009
HMUK485914
HMAR272569
HBUT415426 HBUT_0511
GFOR411154 GFO_2127
FTUL458234 FTA_0082
FTUL393011 FTH_0070
FTUL351581 FTL_0074
FSP1855 FRANEAN1_1319
FSP106370 FRANCCI3_3585
FJOH376686 FJOH_2143
FALN326424 FRAAL5784
CVES412965 COSY_0868
CTRA471473
CTRA471472
CSUL444179
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPEL335992 SAR11_0456
CMUR243161
CMIC443906 CMM_1378
CMIC31964 CMS0766
CMET456442
CMAQ397948
CKOR374847
CJEJ407148 C8J_0179
CJEJ360109 JJD26997_0200
CJEJ354242 CJJ81176_0221
CJEJ195099 CJE_0183
CJEJ192222 CJ0190C
CJEI306537 JK1179
CFEL264202
CCAV227941
CBLO291272 BPEN_226
CBLO203907 BFL219
CABO218497
BXEN266265
BTUR314724 BT0086
BSP107806 BU496
BLON206672 BL0936
BHER314723 BH0086
BGAR290434 BG0086
BFRA295405 BF4487
BFRA272559 BF4282
BCIC186490 BCI_0416
BBUR224326 BB_0086
BAPH372461 BCC_313
BAPH198804 BUSG477
BAFZ390236 BAPKO_0086
AYEL322098
AURANTIMONAS
ASP1667 ARTH_2473
APER272557
ANAE240017 ANA_1183
ALAI441768
AFUL224325
ACEL351607 ACEL_1549
AAUR290340 AAUR_2442


Organism features enriched in list (features available for 160 out of the 172 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00132281492
Arrangment:Pairs 0.000053615112
Disease:Leptospirosis 0.005519244
Disease:Pharyngitis 0.000028388
Disease:bronchitis_and_pneumonitis 0.000028388
Endospores:No 3.685e-1599211
Endospores:Yes 0.0001511453
GC_Content_Range4:0-40 0.000923074213
GC_Content_Range4:40-60 0.006862750224
GC_Content_Range7:0-30 1.076e-62847
GC_Content_Range7:50-60 0.000159915107
Genome_Size_Range5:0-2 5.872e-1885155
Genome_Size_Range5:2-4 0.004622642197
Genome_Size_Range5:4-6 2.152e-824184
Genome_Size_Range9:0-1 1.240e-162727
Genome_Size_Range9:1-2 3.887e-758128
Genome_Size_Range9:4-5 0.00023841396
Genome_Size_Range9:5-6 0.00017771188
Gram_Stain:Gram_Neg 7.404e-961333
Habitat:Host-associated 0.001588671206
Habitat:Multiple 0.000205032178
Habitat:Specialized 0.00802072253
Motility:No 0.000050360151
Motility:Yes 5.322e-650267
Optimal_temp.:37 0.003410340106
Optimal_temp.:85 0.005519244
Oxygen_Req:Anaerobic 0.001565940102
Oxygen_Req:Facultative 6.307e-731201
Salinity:Non-halophilic 0.006007139106
Shape:Irregular_coccus 1.733e-71517
Shape:Rod 4.067e-769347
Shape:Sphere 2.357e-71619
Shape:Spiral 0.00226601734
Temp._range:Hyperthermophilic 0.00001831623



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
GLYCOCAT-PWY (glycogen degradation I)2462210.6067
PWY-5918 (heme biosynthesis I)2722330.5875
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2862380.5697
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951840.5680
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3002410.5404
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)1491480.5276
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2912340.5264
PWY-5913 (TCA cycle variation IV)3012390.5241
GLUTATHIONESYN-PWY (glutathione biosynthesis)3392580.5201
PWY-4041 (γ-glutamyl cycle)2792260.5171
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2962350.5156
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181890.5049
NAGLIPASYN-PWY (lipid IVA biosynthesis)3482600.5042
PYRIDOXSYN-PWY (pyridoxal 5'-phosphate biosynthesis I)4222940.5031
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251920.4969
PWY-5857 (ubiquinone-10 biosynthesis (prokaryotic))1831660.4956
PWY-5669 (phosphatidylethanolamine biosynthesis I)4162900.4934
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2902280.4913
TYRFUMCAT-PWY (tyrosine degradation I)1841660.4911
PWY-1269 (CMP-KDO biosynthesis I)3252460.4885
UBISYN-PWY (ubiquinol-8 biosynthesis (prokaryotic))3982810.4867
PWY-5028 (histidine degradation II)1301280.4743
PWY0-862 (cis-dodecenoyl biosynthesis)3432520.4685
PWY-5856 (ubiquinone-9 biosynthesis (prokaryotic))2552050.4677
PWY-5855 (ubiquinone-7 biosynthesis (prokaryotic))1911670.4674
CENTFERM-PWY (acetyl-CoA fermentation to butyrate I)2081760.4577
PWY-5386 (methylglyoxal degradation I)3052300.4526
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491990.4508
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491990.4508
PWY0-845 (superpathway of pyridoxal 5'-phosphate biosynthesis and salvage)3292410.4432
PWY-6268 (adenosylcobalamin salvage from cobalamin)3172330.4315
PROSYN-PWY (proline biosynthesis I)4753050.4262
PWY0-541 (cyclopropane fatty acid (CFA) biosynthesis)3002230.4246
GLUCONSUPER-PWY (D-gluconate degradation)2291830.4211
GDPRHAMSYN-PWY (GDP-D-rhamnose biosynthesis)1561380.4181
AST-PWY (arginine degradation II (AST pathway))1201140.4173
ECASYN-PWY (enterobacterial common antigen biosynthesis)1911590.4116
THISYN-PWY (thiamin biosynthesis I)5023130.4088
PWY0-1264 (biotin-carboxyl carrier protein assembly)5143170.4063
SULFATE-CYS-PWY (superpathway of sulfate assimilation and cysteine biosynthesis)3652530.4045
PWY-5340 (sulfate activation for sulfonation)3852620.4004
PWY0-501 (lipoate biosynthesis and incorporation I)3852620.4004



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG11604   EG11440   EG11260   
EG121630.999660.9998490.99854
EG116040.9997880.998704
EG114400.998963
EG11260



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PAIRWISE BLAST SCORES:

  EG12163   EG11604   EG11440   EG11260   
EG121630.0f0---
EG11604-0.0f0--
EG11440--0.0f0-
EG11260---0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG11440 EG11604 (centered at EG11440)
EG11260 (centered at EG11260)
EG12163 (centered at EG12163)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  EG12163   EG11604   EG11440   EG11260   
396/623411/623378/623400/623
AAEO224324:0:Tyes--2100
AAUR290340:2:Tyes---0
AAVE397945:0:Tyes4226438243840
ABAC204669:0:Tyes100710910670
ABAU360910:0:Tyes30041872
ABOR393595:0:Tyes0422444
ABUT367737:0:Tyes--20
ACAU438753:0:Tyes3956207603591
ACEL351607:0:Tyes---0
ACRY349163:8:Tyes225332002219
ADEH290397:0:Tyes-199702928
AEHR187272:0:Tyes2527253125290
AFER243159:0:Tyes2371237523730
AHYD196024:0:Tyes0423811
AMAR234826:0:Tyes-0654213
AMAR329726:9:Tyes42193278-0
AMET293826:0:Tyes450491
ANAE240017:0:Tyes---0
AORE350688:0:Tyes446045
APHA212042:0:Tyes-1735710
APLE416269:0:Tyes0158157197
APLE434271:0:Tno0162161202
ASAL382245:5:Tyes3884388038820
ASP1667:3:Tyes---0
ASP232721:2:Tyes3637379938010
ASP62928:0:Tyes3950023700
ASP62977:0:Tyes31760234
ASP76114:2:Tyes07674189
AVAR240292:3:Tyes36232987160
BABO262698:0:Tno-0326-
BABO262698:1:Tno0---
BAFZ390236:2:Fyes---0
BAMB339670:3:Tno2562612600
BAMB398577:3:Tno2762812800
BAMY326423:0:Tyes2390-
BANT260799:0:Tno0-2-
BANT261594:2:Tno0-2-
BANT568206:2:Tyes2-0-
BANT592021:2:Tno0-2-
BAPH198804:0:Tyes--0-
BAPH372461:0:Tyes--0-
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ZMOB264203:0:Tyes012048101649



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