CANDIDATE ID: 870

CANDIDATE ID: 870

NUMBER OF GENES: 4
AVERAGE SCORE:    9.9934333e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    7.5000001e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7195 (folX) (b2303)
   Products of gene:
     - H2NTPEPIM-MONOMER (dihydroneopterin triphosphate 2'-epimerase monomer)
     - FOLXTET-CPLX (dihydroneopterin triphosphate 2'-epimerase)
       Reactions:
        7,8-dihydroneopterin triphosphate  =  7,8-dihydromonapterin triphosphate
         In pathways
         PWY0-1433 (tetrahydromonapterin biosynthesis)

- EG11674 (ygiH) (b3059)
   Products of gene:
     - EG11674-MONOMER (conserved inner membrane protein)

- EG11673 (folB) (b3058)
   Products of gene:
     - H2NEOPTERINALDOL-MONOMER (FolB)
     - CPLX0-3936 (dihydroneopterin aldolase)
       Reactions:
        7,8-dihydro-D-neopterin  =  glycolaldehyde + 6-hydroxymethyl-7,8-dihydropterin
         In pathways
         ALL-CHORISMATE-PWY (superpathway of chorismate)
         PWY-6147 (PWY-6147)
         FOLSYN-PWY (tetrahydrofolate biosynthesis)

- EG11171 (ygjD) (b3064)
   Products of gene:
     - EG11171-MONOMER (YgjD, target for YeaZ protease)
     - CPLX0-7800 (YgjD, target for YeaZ protease)



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ORGANISMS CONTAINING AT LEAST 3 GENES FROM THE GROUP:

Total number of orgs: 159
Effective number of orgs (counting one per cluster within 468 clusters): 103

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM43
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317584
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329534
YPES386656 ncbi Yersinia pestis Pestoides F4
YPES377628 ncbi Yersinia pestis Nepal5164
YPES360102 ncbi Yersinia pestis Antiqua4
YPES349746 ncbi Yersinia pestis Angola4
YPES214092 ncbi Yersinia pestis CO924
YPES187410 ncbi Yersinia pestis KIM 104
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80814
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A3
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110183
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103313
XFAS405440 ncbi Xylella fastidiosa M123
XFAS183190 ncbi Xylella fastidiosa Temecula13
XFAS160492 ncbi Xylella fastidiosa 9a5c3
XCAM487884 Xanthomonas campestris pv. paulliniae3
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-103
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80043
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339133
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3063
VVUL216895 ncbi Vibrio vulnificus CMCP64
VVUL196600 ncbi Vibrio vulnificus YJ0164
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106334
VFIS312309 ncbi Vibrio fischeri ES1144
VCHO345073 ncbi Vibrio cholerae O3954
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169613
TTUR377629 ncbi Teredinibacter turnerae T79013
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252593
TCRU317025 ncbi Thiomicrospira crunogena XCL-24
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT24
SSP94122 ncbi Shewanella sp. ANA-34
SSON300269 ncbi Shigella sonnei Ss0464
SSED425104 ncbi Shewanella sediminis HAW-EB33
SPYO286636 ncbi Streptococcus pyogenes MGAS103943
SPRO399741 ncbi Serratia proteamaculans 5684
SPEA398579 ncbi Shewanella pealeana ATCC 7003454
SONE211586 ncbi Shewanella oneidensis MR-14
SLOI323850 ncbi Shewanella loihica PV-44
SHIGELLA ncbi Shigella flexneri 2a str. 2457T4
SHAL458817 ncbi Shewanella halifaxensis HAW-EB44
SGLO343509 ncbi Sodalis glossinidius morsitans4
SFLE373384 ncbi Shigella flexneri 5 str. 84014
SFLE198214 ncbi Shigella flexneri 2a str. 3014
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4764
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B674
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91504
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT184
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty24
SDYS300267 ncbi Shigella dysenteriae Sd1974
SDEN318161 ncbi Shewanella denitrificans OS2174
SDEG203122 ncbi Saccharophagus degradans 2-403
SBOY300268 ncbi Shigella boydii Sb2274
SBAL402882 ncbi Shewanella baltica OS1854
SBAL399599 ncbi Shewanella baltica OS1954
RPAL316058 ncbi Rhodopseudomonas palustris HaA23
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30004
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a4
PSTU379731 ncbi Pseudomonas stutzeri A15014
PSP56811 Psychrobacter sp.3
PPUT76869 ncbi Pseudomonas putida GB-13
PPUT351746 ncbi Pseudomonas putida F13
PPUT160488 ncbi Pseudomonas putida KT24403
PPRO298386 ncbi Photobacterium profundum SS94
PMUL272843 ncbi Pasteurella multocida multocida Pm704
PMEN399739 ncbi Pseudomonas mendocina ymp4
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO14
PING357804 ncbi Psychromonas ingrahamii 374
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1254
PFLU220664 ncbi Pseudomonas fluorescens Pf-54
PFLU216595 ncbi Pseudomonas fluorescens SBW254
PFLU205922 ncbi Pseudomonas fluorescens Pf0-14
PENT384676 ncbi Pseudomonas entomophila L483
PCRY335284 ncbi Psychrobacter cryohalolentis K53
PATL342610 ncbi Pseudoalteromonas atlantica T6c4
PARC259536 ncbi Psychrobacter arcticus 273-43
PAER208964 ncbi Pseudomonas aeruginosa PAO14
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA144
NOCE323261 ncbi Nitrosococcus oceani ATCC 197074
NMUL323848 ncbi Nitrosospira multiformis ATCC 251964
NMEN272831 ncbi Neisseria meningitidis FAM183
NMEN122587 ncbi Neisseria meningitidis Z24913
NMEN122586 ncbi Neisseria meningitidis MC583
NGON242231 ncbi Neisseria gonorrhoeae FA 10903
NEUT335283 ncbi Nitrosomonas eutropha C914
NEUR228410 ncbi Nitrosomonas europaea ATCC 197184
MXAN246197 ncbi Myxococcus xanthus DK 16223
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E4
MSP400668 ncbi Marinomonas sp. MWYL13
MPET420662 ncbi Methylibium petroleiphilum PM14
MMAR394221 ncbi Maricaulis maris MCS103
MMAG342108 ncbi Magnetospirillum magneticum AMB-13
MFLA265072 ncbi Methylobacillus flagellatus KT3
MCAP243233 ncbi Methylococcus capsulatus Bath4
MAQU351348 ncbi Marinobacter aquaeolei VT84
LPNE400673 ncbi Legionella pneumophila Corby4
LPNE297246 ncbi Legionella pneumophila Paris4
LPNE297245 ncbi Legionella pneumophila Lens4
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 14
LPLA220668 ncbi Lactobacillus plantarum WCFS13
LCHO395495 ncbi Leptothrix cholodnii SP-63
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785784
ILOI283942 ncbi Idiomarina loihiensis L2TR4
HSOM228400 ncbi Haemophilus somnus 23364
HSOM205914 ncbi Haemophilus somnus 129PT4
HINF71421 ncbi Haemophilus influenzae Rd KW204
HINF374930 ncbi Haemophilus influenzae PittEE4
HINF281310 ncbi Haemophilus influenzae 86-028NP4
HHAL349124 ncbi Halorhodospira halophila SL14
HDUC233412 ncbi Haemophilus ducreyi 35000HP4
HCHE349521 ncbi Hahella chejuensis KCTC 23963
ESP42895 Enterobacter sp.4
EFER585054 ncbi Escherichia fergusonii ATCC 354694
ECOO157 ncbi Escherichia coli O157:H7 EDL9334
ECOL83334 Escherichia coli O157:H74
ECOL585397 ncbi Escherichia coli ED1a4
ECOL585057 ncbi Escherichia coli IAI394
ECOL585056 ncbi Escherichia coli UMN0264
ECOL585055 ncbi Escherichia coli 559894
ECOL585035 ncbi Escherichia coli S884
ECOL585034 ncbi Escherichia coli IAI14
ECOL481805 ncbi Escherichia coli ATCC 87394
ECOL469008 ncbi Escherichia coli BL21(DE3)4
ECOL439855 ncbi Escherichia coli SMS-3-54
ECOL413997 ncbi Escherichia coli B str. REL6064
ECOL409438 ncbi Escherichia coli SE114
ECOL405955 ncbi Escherichia coli APEC O14
ECOL364106 ncbi Escherichia coli UTI894
ECOL362663 ncbi Escherichia coli 5364
ECOL331111 ncbi Escherichia coli E24377A4
ECOL316407 ncbi Escherichia coli K-12 substr. W31104
ECOL199310 ncbi Escherichia coli CFT0734
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10434
ECAN269484 ncbi Ehrlichia canis Jake3
DARO159087 ncbi Dechloromonas aromatica RCB3
CVIO243365 ncbi Chromobacterium violaceum ATCC 124724
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA4
CSAL290398 ncbi Chromohalobacter salexigens DSM 30434
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)4
CPSY167879 ncbi Colwellia psychrerythraea 34H4
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10623
CJAP155077 Cellvibrio japonicus3
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1114
CBUR360115 ncbi Coxiella burnetii RSA 3314
CBUR227377 ncbi Coxiella burnetii RSA 4934
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN3
CBLO203907 ncbi Candidatus Blochmannia floridanus3
BSP376 Bradyrhizobium sp.3
BCIC186490 Candidatus Baumannia cicadellinicola3
ASP76114 ncbi Aromatoleum aromaticum EbN14
ASP62977 ncbi Acinetobacter sp. ADP13
ASP62928 ncbi Azoarcus sp. BH724
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4494
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL034
APLE416269 ncbi Actinobacillus pleuropneumoniae L204
AHYD196024 Aeromonas hydrophila dhakensis3
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232704
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-14
ABOR393595 ncbi Alcanivorax borkumensis SK24


Names of the homologs of the genes in the group in each of these orgs
  G7195   EG11674   EG11673   EG11171   
ZMOB264203 ZMO1059ZMO1195ZMO1904
YPSE349747 YPSIP31758_0558YPSIP31758_0557YPSIP31758_0558YPSIP31758_0556
YPSE273123 YPTB3413YPTB3414YPTB3413YPTB3415
YPES386656 YPDSF_0432YPDSF_0431YPDSF_0432YPDSF_0430
YPES377628 YPN_0508YPN_0507YPN_0508YPN_0506
YPES360102 YPA_3142YPA_3143YPA_3142YPA_3144
YPES349746 YPANGOLA_A0298YPANGOLA_A0299YPANGOLA_A0298YPANGOLA_A0300
YPES214092 YPO0648YPO0647YPO0648YPO0646
YPES187410 Y3531Y3532Y3531Y3534
YENT393305 YE3679YE3680YE3679YE3681
XORY360094 XOOORF_0750XOOORF_0750XOOORF_0749
XORY342109 XOO3900XOO3900XOO3901
XORY291331 XOO4124XOO4124XOO4125
XFAS405440 XFASM12_1802XFASM12_1802XFASM12_1803
XFAS183190 PD_1642PD_1642PD_1643
XFAS160492 XF0436XF0436XF0435
XCAM487884 XCC-B100_4000XCC-B100_4000XCC-B100_4001
XCAM316273 XCAORF_0478XCAORF_0478XCAORF_0477
XCAM314565 XC_3887XC_3887XC_3888
XCAM190485 XCC3815XCC3815XCC3816
XAXO190486 XAC3870XAC3870XAC3871
VVUL216895 VV1_0625VV1_0626VV1_0625VV1_0628
VVUL196600 VV0568VV0567VV0568VV0565
VPAR223926 VP0411VP0410VP0411VP0408
VFIS312309 VF2247VF2248VF2247VF2249
VCHO345073 VC0395_A0052VC0395_A0051VC0395_A0052VC0395_A0049
VCHO VC0524VC0523VC0524
TTUR377629 TERTU_3157TERTU_3157TERTU_3158
TDEN292415 TBD_2382TBD_2381TBD_2384
TCRU317025 TCR_1812TCR_1811TCR_1812TCR_1810
STYP99287 STM3206STM3207STM3206STM3208
SSP94122 SHEWANA3_1543SHEWANA3_3082SHEWANA3_3081SHEWANA3_3083
SSON300269 SSO_2360SSO_3196SSO_3195SSO_3201
SSED425104 SSED_1077SSED_1078SSED_1076
SPYO286636 M6_SPY0727M6_SPY0821M6_SPY1602
SPRO399741 SPRO_3321SPRO_4296SPRO_4295SPRO_4297
SPEA398579 SPEA_1664SPEA_0964SPEA_0965SPEA_0962
SONE211586 SO_2921SO_1290SO_1291SO_1289
SLOI323850 SHEW_2399SHEW_1001SHEW_1002SHEW_1000
SHIGELLA FOLXYGIHYGIGYGJD
SHAL458817 SHAL_2601SHAL_1010SHAL_1011SHAL_1008
SGLO343509 SG0256SG0255SG0256SG0254
SFLE373384 SFV_2370SFV_3099SFV_3098SFV_3104
SFLE198214 AAN43892.1AAN44576.1AAN44575.1AAN44581.1
SENT454169 SEHA_C3460SEHA_C3461SEHA_C3460SEHA_C3462
SENT321314 SCH_3153SCH_3154SCH_3153SCH_3155
SENT295319 SPA3074SPA3075SPA3074SPA3076
SENT220341 STY3385STY3386STY3385STY3387
SENT209261 T3126T3127T3126T3128
SDYS300267 SDY_2500SDY_3242SDY_3241SDY_3248
SDEN318161 SDEN_2361SDEN_2829SDEN_2828SDEN_2830
SDEG203122 SDE_0723SDE_0723SDE_0720
SBOY300268 SBO_2338SBO_2915SBO_2914SBO_2922
SBAL402882 SHEW185_2703SHEW185_1193SHEW185_1194SHEW185_1192
SBAL399599 SBAL195_2779SBAL195_1226SBAL195_1227SBAL195_1225
RPAL316058 RPB_2422RPB_3534RPB_0315
PSYR223283 PSPTO_1181PSPTO_0541PSPTO_0542PSPTO_0540
PSYR205918 PSYR_1019PSYR_4637PSYR_4636PSYR_4638
PSTU379731 PST_1135PST_0716PST_0717PST_0715
PSP56811 PSYCPRWF_1246PSYCPRWF_1246PSYCPRWF_0363
PPUT76869 PPUTGB1_0422PPUTGB1_0423PPUTGB1_0421
PPUT351746 PPUT_0425PPUT_0426PPUT_0424
PPUT160488 PP_0391PP_0392PP_0390
PPRO298386 PBPRA0436PBPRA0435PBPRA0436PBPRA0434
PMUL272843 PM1697PM1696PM1697PM1238
PMEN399739 PMEN_3290PMEN_4024PMEN_4023PMEN_4025
PLUM243265 PLU3974PLU3975PLU3974PLU3976
PING357804 PING_0172PING_0171PING_0172PING_0314
PHAL326442 PSHAA0072PSHAA2303PSHAA2302PSHAA2304
PFLU220664 PFL_0948PFL_5659PFL_5658PFL_5660
PFLU216595 PFLU5159PFLU5588PFLU5587PFLU5589
PFLU205922 PFL_0890PFL_5145PFL_5144PFL_5146
PENT384676 PSEEN0418PSEEN0419PSEEN0417
PCRY335284 PCRYO_1208PCRYO_1208PCRYO_0234
PATL342610 PATL_2910PATL_1043PATL_1044PATL_1042
PARC259536 PSYC_1182PSYC_1182PSYC_0214
PAER208964 PA3439PA0581PA0582PA0580
PAER208963 PA14_19620PA14_07580PA14_07590PA14_07570
NOCE323261 NOC_0039NOC_0040NOC_0039NOC_0041
NMUL323848 NMUL_A2063NMUL_A2062NMUL_A2063NMUL_A2061
NMEN272831 NMC1026NMC1027NMC0419
NMEN122587 NMA1261NMA1262NMA0661
NMEN122586 NMB_1062NMB_1063NMB_1802
NGON242231 NGO0858NGO0857NGO0104
NEUT335283 NEUT_0294NEUT_0295NEUT_0294NEUT_0296
NEUR228410 NE0223NE0224NE0223NE0225
MXAN246197 MXAN_1457MXAN_4112MXAN_2051
MSUC221988 MS1824MS1823MS1824MS1763
MSP400668 MMWYL1_1710MMWYL1_1046MMWYL1_1045
MPET420662 MPE_A2613MPE_A2760MPE_A2613MPE_A1395
MMAR394221 MMAR10_0774MMAR10_1715MMAR10_0039
MMAG342108 AMB2297AMB3613AMB4419
MFLA265072 MFLA_2327MFLA_2328MFLA_2326
MCAP243233 MCA_2988MCA_2989MCA_2988MCA_2990
MAQU351348 MAQU_3783MAQU_0662MAQU_0663MAQU_0661
LPNE400673 LPC_1513LPC_1825LPC_1513LPC_1826
LPNE297246 LPP2011LPP2305LPP2011LPP2306
LPNE297245 LPL2006LPL2278LPL2006LPL2279
LPNE272624 LPG2029LPG2356LPG2029LPG2357
LPLA220668 LP_3299LP_1842LP_0721
LCHO395495 LCHO_2586LCHO_3146LCHO_1493
KPNE272620 GKPORF_B2000GKPORF_B2797GKPORF_B2796GKPORF_B2807
ILOI283942 IL1968IL1969IL1968IL1970
HSOM228400 HSM_0320HSM_0321HSM_0320HSM_0736
HSOM205914 HS_1298HS_1297HS_1298HS_0411
HINF71421 HI_0265HI_0266HI_0265HI_0530
HINF374930 CGSHIEE_01730CGSHIEE_01725CGSHIEE_01730CGSHIEE_00340
HINF281310 NTHI0372NTHI0373NTHI0372NTHI0656
HHAL349124 HHAL_2345HHAL_2329HHAL_2345HHAL_2327
HDUC233412 HD_0978HD_0977HD_0978HD_0471
HCHE349521 HCH_06269HCH_06268HCH_06270
ESP42895 ENT638_2852ENT638_3462ENT638_3461ENT638_3470
EFER585054 EFER_0860EFER_3004EFER_3003EFER_3005
ECOO157 FOLXYGIHYGIGYGJD
ECOL83334 ECS3187ECS3942ECS3941ECS3947
ECOL585397 ECED1_2767ECED1_3728ECED1_3727ECED1_3733
ECOL585057 ECIAI39_2450ECIAI39_3555ECIAI39_3554ECIAI39_3560
ECOL585056 ECUMN_2643ECUMN_3542ECUMN_3541ECUMN_3547
ECOL585055 EC55989_2547EC55989_3474EC55989_3473EC55989_3479
ECOL585035 ECS88_2450ECS88_3457ECS88_3456ECS88_3462
ECOL585034 ECIAI1_2379ECIAI1_3207ECIAI1_3206ECIAI1_3212
ECOL481805 ECOLC_1349ECOLC_0640ECOLC_0641ECOLC_0635
ECOL469008 ECBD_1356ECBD_0682ECBD_0683ECBD_0677
ECOL439855 ECSMS35_2459ECSMS35_3352ECSMS35_3351ECSMS35_3357
ECOL413997 ECB_02228ECB_02929ECB_02928ECB_02934
ECOL409438 ECSE_2561ECSE_3339ECSE_3338ECSE_3345
ECOL405955 APECO1_4261APECO1_3355APECO1_3356APECO1_3350
ECOL364106 UTI89_C2587UTI89_C3495UTI89_C3494UTI89_C3500
ECOL362663 ECP_2342ECP_3149ECP_3148ECP_3154
ECOL331111 ECE24377A_2597ECE24377A_3522ECE24377A_3521ECE24377A_3528
ECOL316407 ECK2297:JW2300:B2303ECK3049:JW3031:B3059ECK3048:JW3030:B3058ECK3054:JW3036:B3064
ECOL199310 C2846C3809C3808C3815
ECAR218491 ECA3045ECA3591ECA3590ECA0683
ECAN269484 ECAJ_0397ECAJ_0007ECAJ_0395
DARO159087 DARO_0533DARO_0534DARO_0530
CVIO243365 CV_3689CV_3688CV_3689CV_2757
CVES412965 COSY_0857COSY_0858COSY_0857COSY_0878
CSAL290398 CSAL_2293CSAL_0972CSAL_0971CSAL_0973
CRUT413404 RMAG_0957RMAG_0958RMAG_0957RMAG_0980
CPSY167879 CPS_2676CPS_4339CPS_4340CPS_4338
CPEL335992 SAR11_0083SAR11_1082SAR11_0311
CJAP155077 CJA_0769CJA_0769CJA_0768
CBUR434922 COXBU7E912_2066COXBU7E912_1323COXBU7E912_2066COXBU7E912_1324
CBUR360115 COXBURSA331_A0116COXBURSA331_A1382COXBURSA331_A0116COXBURSA331_A1383
CBUR227377 CBU_1968CBU_1239CBU_1968CBU_1240
CBLO291272 BPEN_061BPEN_062BPEN_060
CBLO203907 BFL060BFL061BFL059
BSP376 BRADO4504BRADO2684BRADO0302
BCIC186490 BCI_0620BCI_0620BCI_0619
ASP76114 EBA4374EBA4373EBA4374EBA4371
ASP62977 ACIAD2408ACIAD2408ACIAD1332
ASP62928 AZO3222AZO3223AZO3222AZO3224
ASAL382245 ASA_0438ASA_0439ASA_0438ASA_3465
APLE434271 APJL_1360APJL_1359APJL_1360APJL_1139
APLE416269 APL_1342APL_1341APL_1342APL_1120
AHYD196024 AHA_3846AHA_3847AHA_0831
AFER243159 AFE_2899AFE_2900AFE_2899AFE_2902
AEHR187272 MLG_1300MLG_2521MLG_2522MLG_2520
ABOR393595 ABO_2057ABO_2058ABO_2057ABO_2059


Organism features enriched in list (features available for 151 out of the 159 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.0000240992
Arrangment:Pairs 0.003308640112
Arrangment:Singles 0.000811790286
Disease:Bubonic_plague 0.000280166
Disease:Dysentery 0.000280166
Disease:Gastroenteritis 0.00013251013
Disease:Legionnaire's_disease 0.004368444
Endospores:No 3.232e-730211
Endospores:Yes 1.090e-6153
GC_Content_Range4:0-40 5.225e-1419213
GC_Content_Range4:40-60 4.926e-16100224
GC_Content_Range7:0-30 0.0015054447
GC_Content_Range7:30-40 2.911e-1015166
GC_Content_Range7:40-50 0.000307545117
GC_Content_Range7:50-60 1.800e-1055107
Genome_Size_Range5:0-2 1.088e-1111155
Genome_Size_Range5:4-6 4.703e-1587184
Genome_Size_Range9:1-2 2.288e-108128
Genome_Size_Range9:4-5 1.833e-64496
Genome_Size_Range9:5-6 2.605e-74388
Gram_Stain:Gram_Neg 3.018e-27139333
Gram_Stain:Gram_Pos 1.993e-202150
Habitat:Specialized 0.0040666653
Motility:No 2.173e-1012151
Motility:Yes 2.631e-9100267
Optimal_temp.:25-30 0.00771051019
Optimal_temp.:35-37 0.0010006913
Oxygen_Req:Anaerobic 2.174e-95102
Oxygen_Req:Facultative 2.242e-1186201
Pathogenic_in:No 0.001377544226
Pathogenic_in:Plant 0.00078751015
Shape:Coccobacillus 0.0012294811
Shape:Coccus 4.325e-6682
Shape:Rod 1.484e-9120347
Shape:Spiral 0.0083135334
Temp._range:Psychrophilic 0.000119089
Temp._range:Thermophilic 0.0002536135



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 246
Effective number of orgs (counting one per cluster within 468 clusters): 210

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
WSUC273121 ncbi Wolinella succinogenes DSM 17400
WPIP955 Wolbachia pipientis1
WPIP80849 Wolbachia endosymbiont of Brugia malayi1
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TROS309801 ncbi Thermomicrobium roseum DSM 51591
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332231
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TFUS269800 ncbi Thermobifida fusca YX1
TERY203124 ncbi Trichodesmium erythraeum IMS1010
TELO197221 ncbi Thermosynechococcus elongatus BP-11
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12511
TDEN243275 ncbi Treponema denticola ATCC 354050
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
STRO369723 ncbi Salinispora tropica CNB-4400
STOK273063 ncbi Sulfolobus tokodaii 70
SSP387093 ncbi Sulfurovum sp. NBC37-10
SSP1148 ncbi Synechocystis sp. PCC 68031
SSOL273057 ncbi Sulfolobus solfataricus P20
SRUB309807 ncbi Salinibacter ruber DSM 138551
SPYO370553 ncbi Streptococcus pyogenes MGAS20961
SMAR399550 ncbi Staphylothermus marinus F10
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB1
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23380
SCO ncbi Streptomyces coelicolor A3(2)0
SAVE227882 ncbi Streptomyces avermitilis MA-46801
SARE391037 ncbi Salinispora arenicola CNS-2050
SACI56780 ncbi Syntrophus aciditrophicus SB1
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99411
RTYP257363 ncbi Rickettsia typhi Wilmington0
RSP357808 ncbi Roseiflexus sp. RS-11
RSP101510 ncbi Rhodococcus jostii RHA10
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332090
RRIC452659 ncbi Rickettsia rickettsii Iowa1
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith1
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RMAS416276 ncbi Rickettsia massiliae MTU51
RFEL315456 ncbi Rickettsia felis URRWXCal21
RCON272944 ncbi Rickettsia conorii Malish 71
RCAS383372 ncbi Roseiflexus castenholzii DSM 139411
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3891
RBEL336407 ncbi Rickettsia bellii RML369-C1
RALB246199 Ruminococcus albus 81
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97900
PSP117 Pirellula sp.1
PRUM264731 ncbi Prevotella ruminicola 231
PMOB403833 ncbi Petrotoga mobilis SJ951
PMAR93060 ncbi Prochlorococcus marinus MIT 92151
PMAR74546 ncbi Prochlorococcus marinus MIT 93121
PMAR167546 ncbi Prochlorococcus marinus MIT 93011
PMAR167542 ncbi Prochlorococcus marinus MIT 95151
PMAR167540 Prochlorococcus marinus pastoris MED4ax1
PMAR146891 ncbi Prochlorococcus marinus AS96011
PLUT319225 ncbi Chlorobium luteolum DSM 2731
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 170
PHOR70601 ncbi Pyrococcus horikoshii OT30
PGIN242619 ncbi Porphyromonas gingivalis W831
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PDIS435591 ncbi Parabacteroides distasonis ATCC 85031
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PAER178306 ncbi Pyrobaculum aerophilum IM20
PACN267747 ncbi Propionibacterium acnes KPA1712020
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
NSP387092 ncbi Nitratiruptor sp. SB155-21
NSP35761 Nocardioides sp.0
NSP103690 ncbi Nostoc sp. PCC 71201
NSEN222891 ncbi Neorickettsia sennetsu Miyayama1
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
NFAR247156 ncbi Nocardia farcinica IFM 101520
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-10
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra0
MTUB336982 ncbi Mycobacterium tuberculosis F110
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE264732 ncbi Moorella thermoacetica ATCC 390731
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MTBRV ncbi Mycobacterium tuberculosis H37Rv0
MTBCDC ncbi Mycobacterium tuberculosis CDC15510
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSP189918 ncbi Mycobacterium sp. KMS0
MSP164757 ncbi Mycobacterium sp. JLS0
MSP164756 ncbi Mycobacterium sp. MCS0
MSME246196 ncbi Mycobacterium smegmatis MC2 1550
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG11
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK0
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P20
MBOV233413 ncbi Mycobacterium bovis AF2122/970
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MAVI243243 ncbi Mycobacterium avium 1040
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
MABS561007 ncbi Mycobacterium abscessus ATCC 199770
LXYL281090 ncbi Leifsonia xyli xyli CTCB071
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82931
LLAC272622 ncbi Lactococcus lactis cremoris SK111
LJOH257314 ncbi Lactobacillus johnsonii NCC 5331
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-001
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1300
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566010
LHEL405566 ncbi Lactobacillus helveticus DPC 45711
LGAS324831 ncbi Lactobacillus gasseri ATCC 333231
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118421
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LCAS321967 ncbi Lactobacillus casei ATCC 3341
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1970
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5500
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)0
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)0
LACI272621 ncbi Lactobacillus acidophilus NCFM1
KRAD266940 ncbi Kineococcus radiotolerans SRS302160
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSAL478009 ncbi Halobacterium salinarum R10
HPYL85963 ncbi Helicobacter pylori J990
HPYL357544 ncbi Helicobacter pylori HPAG10
HPY ncbi Helicobacter pylori 266950
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMAR272569 ncbi Haloarcula marismortui ATCC 430490
HHEP235279 ncbi Helicobacter hepaticus ATCC 514490
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237791
HACI382638 ncbi Helicobacter acinonychis Sheeba0
GFOR411154 ncbi Gramella forsetii KT08031
FSP1855 Frankia sp. EAN1pec0
FSP106370 ncbi Frankia sp. CcI31
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B10
FJOH376686 ncbi Flavobacterium johnsoniae UW1011
FALN326424 ncbi Frankia alni ACN14a1
DSP255470 ncbi Dehalococcoides sp. CBDB11
DSP216389 ncbi Dehalococcoides sp. BAV11
DRAD243230 ncbi Deinococcus radiodurans R11
DGEO319795 ncbi Deinococcus geothermalis DSM 113001
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G201
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTET212717 ncbi Clostridium tetani E880
CTEP194439 ncbi Chlorobium tepidum TLS1
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE250
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPHY357809 ncbi Clostridium phytofermentans ISDg1
CPER289380 ncbi Clostridium perfringens SM1011
CPER195103 ncbi Clostridium perfringens ATCC 131241
CPER195102 ncbi Clostridium perfringens 131
CNOV386415 ncbi Clostridium novyi NT1
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3821
CMIC31964 ncbi Clavibacter michiganensis sepedonicus1
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1671
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CKLU431943 ncbi Clostridium kluyveri DSM 5551
CJEJ407148 ncbi Campylobacter jejuni jejuni 811160
CJEJ360109 ncbi Campylobacter jejuni doylei 269.970
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1760
CJEJ195099 ncbi Campylobacter jejuni RM12210
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111680
CJEI306537 ncbi Corynebacterium jeikeium K4110
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3811
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130320
CFET360106 ncbi Campylobacter fetus fetus 82-400
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CEFF196164 ncbi Corynebacterium efficiens YS-3140
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131290
CCUR360105 ncbi Campylobacter curvus 525.921
CCON360104 ncbi Campylobacter concisus 138261
CCHL340177 ncbi Chlorobium chlorochromatii CaD30
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto0
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6571
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B0
CBOT498213 ncbi Clostridium botulinum B1 str. Okra0
CBOT441772 ncbi Clostridium botulinum F str. Langeland0
CBOT441771 ncbi Clostridium botulinum A str. Hall1
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193971
CBOT36826 Clostridium botulinum A1
CABO218497 ncbi Chlamydophila abortus S26/30
BTUR314724 ncbi Borrelia turicatae 91E1350
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54821
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)1
BLON206672 ncbi Bifidobacterium longum NCC27051
BHER314723 ncbi Borrelia hermsii DAH0
BGAR290434 ncbi Borrelia garinii PBi0
BFRA295405 ncbi Bacteroides fragilis YCH460
BFRA272559 ncbi Bacteroides fragilis NCTC 93430
BBUR224326 ncbi Borrelia burgdorferi B310
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1001
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)1
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)1
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AVAR240292 ncbi Anabaena variabilis ATCC 294130
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP1667 Arthrobacter sp.0
APER272557 ncbi Aeropyrum pernix K10
AORE350688 ncbi Alkaliphilus oremlandii OhILAs1
ANAE240017 Actinomyces oris MG10
AMAR329726 ncbi Acaryochloris marina MBIC110170
AMAR234826 ncbi Anaplasma marginale St. Maries1
ALAI441768 ncbi Acholeplasma laidlawii PG-8A1
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
ACRY349163 ncbi Acidiphilium cryptum JF-51
ACEL351607 ncbi Acidothermus cellulolyticus 11B1
ABUT367737 ncbi Arcobacter butzleri RM40181
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3451
AAUR290340 ncbi Arthrobacter aurescens TC10


Names of the homologs of the genes in the group in each of these orgs
  G7195   EG11674   EG11673   EG11171   
WSUC273121
WPIP955 WD_1045
WPIP80849 WB_0645
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496
TWHI203267
TVOL273116
TROS309801 TRD_0177
TPSE340099 TETH39_0840
TPEN368408
TPAL243276
TKOD69014
TFUS269800 TFU_2891
TERY203124
TELO197221 TLL1107
TDEN326298 TMDEN_0666
TDEN243275
TACI273075
STRO369723
STOK273063
SSP387093
SSP1148 SLL1973
SSOL273057
SRUB309807 SRU_2545
SPYO370553 MGAS2096_SPY0782
SMAR399550
SFUM335543 SFUM_3311
SERY405948
SCO
SAVE227882 SAV4974
SARE391037
SACI56780 SYN_00423
RXYL266117 RXYL_2113
RTYP257363
RSP357808 ROSERS_3809
RSP101510
RSAL288705
RRIC452659 RRIOWA_0081
RRIC392021 A1G_00390
RPRO272947
RMAS416276 RMA_0065
RFEL315456 RF_0146
RCON272944 RC0061
RCAS383372 RCAS_1072
RCAN293613
RBEL391896 A1I_00985
RBEL336407 RBE_1260
RALB246199 GRAORF_0995
RAKA293614
PTOR263820
PSP117 RB9084
PRUM264731 GFRORF0746
PMOB403833 PMOB_1616
PMAR93060 P9215_15561
PMAR74546 PMT9312_1425
PMAR167546 P9301ORF_1543
PMAR167542 P9515ORF_1557
PMAR167540 PMM1327
PMAR146891 A9601_15271
PLUT319225 PLUT_2058
PISL384616
PINT246198
PHOR70601
PGIN242619 PG_1724
PFUR186497
PDIS435591 BDI_0532
PAST100379
PARS340102
PAER178306
PACN267747
PABY272844
OTSU357244
NSP387092 NIS_0413
NSP35761
NSP103690 ALR3512
NSEN222891 NSE_0236
NPHA348780
NFAR247156
MVAN350058
MTUB419947
MTUB336982
MTHE349307
MTHE264732 MOTH_1321
MTHE187420
MTBRV
MTBCDC
MSYN262723
MSTA339860
MSP189918
MSP164757
MSP164756
MSME246196
MSED399549
MPUL272635
MPNE272634
MPEN272633
MMYC272632 MSC_0112
MMOB267748
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR368407
MMAR267377
MLEP272631
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGIL350054
MGEN243273
MFLO265311
MCAP340047
MBUR259564
MBOV410289
MBOV233413
MBAR269797
MAVI243243
MART243272
MAEO419665
MACE188937
MABS561007
LXYL281090 LXX21470
LMES203120 LEUM_1365
LLAC272622 LACR_1064
LJOH257314 LJ_1169
LINT363253 LI0198
LINT267671
LINT189518
LHEL405566 LHV_1231
LGAS324831 LGAS_0998
LDEL390333 LDB0992
LDEL321956
LCAS321967 LSEI_2248
LBOR355277
LBOR355276
LBIF456481
LBIF355278
LACI272621 LBA1121
KRAD266940
IHOS453591
HWAL362976
HSP64091
HSAL478009
HPYL85963
HPYL357544
HPY
HMUK485914
HMAR272569
HHEP235279
HBUT415426
HAUR316274 HAUR_4413
HACI382638
GFOR411154 GFO_1645
FSP1855
FSP106370 FRANCCI3_2662
FNOD381764
FJOH376686 FJOH_4593
FALN326424 FRAAL2797
DSP255470 CBDBA1390
DSP216389 DEHABAV1_1234
DRAD243230 DR_2021
DGEO319795 DGEO_1788
DDES207559 DDE_0172
CTRA471473
CTRA471472
CTET212717
CTEP194439 CT_0093
CSUL444179
CPRO264201
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPHY357809 CPHY_0352
CPER289380 CPR_2202
CPER195103 CPF_2496
CPER195102 CPE2232
CNOV386415 NT01CX_0478
CMUR243161
CMIC443906 CMM_2571
CMIC31964 CMS0523
CMET456442
CMAQ397948 CMAQ_0517
CKOR374847
CKLU431943 CKL_0446
CJEJ407148
CJEJ360109
CJEJ354242
CJEJ195099
CJEJ192222
CJEI306537
CHOM360107 CHAB381_1504
CGLU196627
CFET360106
CFEL264202
CEFF196164
CDIP257309
CCUR360105 CCV52592_1695
CCON360104 CCC13826_0982
CCHL340177
CCAV227941
CBOT536232
CBOT515621 CLJ_B2363
CBOT508765
CBOT498213
CBOT441772
CBOT441771 CLC_2100
CBOT441770 CLB_2095
CBOT36826 CBO2156
CABO218497
BTUR314724
BTHE226186 BT_0920
BSP107806 BU058
BLON206672 BL1685
BHER314723
BGAR290434
BFRA295405
BFRA272559
BBUR224326
BBAC264462 BD0636
BAPH372461 BCC_037
BAPH198804 BUSG055
BAFZ390236
AYEL322098
AVAR240292
AURANTIMONAS
ASP1667
APER272557
AORE350688 CLOS_1400
ANAE240017
AMAR329726
AMAR234826 AM1298
ALAI441768 ACL_1354
AFUL224325
ACRY349163 ACRY_0129
ACEL351607 ACEL_0360
ABUT367737 ABU_2034
ABAC204669 ACID345_2138
AAUR290340


Organism features enriched in list (features available for 231 out of the 246 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Aggregates 0.003107489
Arrangment:Filaments 0.00008461010
Arrangment:Pairs 0.004176333112
Arrangment:Singles 0.0030858128286
Disease:Botulism 0.009511855
Disease:Pharyngitis 0.000564088
Disease:bronchitis_and_pneumonitis 0.000564088
Endospores:No 6.726e-9116211
GC_Content_Range4:0-40 6.522e-6109213
GC_Content_Range4:40-60 0.002540374224
GC_Content_Range7:0-30 1.850e-93847
GC_Content_Range7:50-60 0.000111626107
GC_Content_Range7:60-70 0.000733338134
GC_Content_Range7:70-100 0.00057171011
Genome_Size_Range5:0-2 3.912e-16104155
Genome_Size_Range5:4-6 7.992e-1335184
Genome_Size_Range9:0-1 7.652e-82427
Genome_Size_Range9:1-2 1.890e-980128
Genome_Size_Range9:4-5 0.00001182096
Genome_Size_Range9:5-6 6.132e-71588
Gram_Stain:Gram_Neg 4.706e-1292333
Gram_Stain:Gram_Pos 0.009630470150
Habitat:Multiple 0.002017456178
Habitat:Specialized 0.00770292953
Motility:No 0.001886074151
Motility:Yes 0.000036183267
Optimal_temp.:30-37 0.0011823118
Optimal_temp.:37 0.000017661106
Oxygen_Req:Anaerobic 1.130e-1171102
Oxygen_Req:Facultative 1.733e-1438201
Pathogenic_in:Animal 0.00507341766
Pathogenic_in:No 0.0096223101226
Shape:Coccus 0.00082052082
Shape:Irregular_coccus 2.818e-61617
Shape:Rod 1.101e-8105347
Shape:Sphere 6.688e-61719
Shape:Spiral 2.024e-82934
Temp._range:Hyperthermophilic 0.00058171723
Temp._range:Mesophilic 0.0024578175473
Temp._range:Thermophilic 0.00240842235



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181300.5740
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3001510.5485
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2901480.5461
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2911480.5441
GLYCOCAT-PWY (glycogen degradation I)2461350.5439
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2961490.5415
AST-PWY (arginine degradation II (AST pathway))120870.5263
PWY-5918 (heme biosynthesis I)2721380.5091
PWY-1269 (CMP-KDO biosynthesis I)3251520.5089
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951130.5020
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2861400.4951
P184-PWY (protocatechuate degradation I (meta-cleavage pathway))94710.4835
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)1761040.4831
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251200.4796
GLUTATHIONESYN-PWY (glutathione biosynthesis)3391500.4693
PWY-5913 (TCA cycle variation IV)3011400.4655
ECASYN-PWY (enterobacterial common antigen biosynthesis)1911070.4652
NAGLIPASYN-PWY (lipid IVA biosynthesis)3481510.4611
PWY-4041 (γ-glutamyl cycle)2791320.4501
GLUCONSUPER-PWY (D-gluconate degradation)2291160.4395
PWY-5861 (superpathway of demethylmenaquinone-8 biosynthesis)50450.4369
PWY-5148 (acyl-CoA hydrolysis)2271140.4289
PWY-5386 (methylglyoxal degradation I)3051360.4283
PWY-5857 (ubiquinone-10 biosynthesis (prokaryotic))183990.4227
PWY0-845 (superpathway of pyridoxal 5'-phosphate biosynthesis and salvage)3291410.4206
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491190.4168
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491190.4168
PWY-5755 (4-hydroxybenzoate biosynthesis II (bacteria and fungi))81580.4086
KDOSYN-PWY (KDO transfer to lipid IVA I)180960.4066
PWY-5855 (ubiquinone-7 biosynthesis (prokaryotic))191990.4013
KDO-NAGLIPASYN-PWY (superpathway of KDO2-lipid A biosynthesis)179950.4012



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG11674   EG11673   EG11171   
G71950.9991130.9994710.998752
EG116740.9997380.999387
EG116730.999599
EG11171



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PAIRWISE BLAST SCORES:

  G7195   EG11674   EG11673   EG11171   
G71950.0f0-2.4e-8-
EG11674-0.0f0--
EG11673--0.0f0-
EG11171---0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG11673 EG11674 (centered at EG11674)
EG11171 (centered at EG11171)
G7195 (centered at G7195)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7195   EG11674   EG11673   EG11171   
147/623400/623158/623412/623
AAEO224324:0:Tyes-0-82
AAVE397945:0:Tyes-0-294
ABAC204669:0:Tyes-0--
ABAU360910:0:Tyes-0-1
ABOR393595:0:Tyes0102
ABUT367737:0:Tyes-0--
ACAU438753:0:Tyes-2620-0
ACEL351607:0:Tyes---0
ACRY349163:8:Tyes---0
ADEH290397:0:Tyes-508-0
AEHR187272:0:Tyes0121212131211
AFER243159:0:Tyes0103
AHYD196024:0:Tyes-290229030
ALAI441768:0:Tyes---0
AMAR234826:0:Tyes-0--
AMET293826:0:Tyes-2004-0
AORE350688:0:Tyes-0--
APHA212042:0:Tyes-0-575
APLE416269:0:Tyes2342332340
APLE434271:0:Tno2382372380
ASAL382245:5:Tyes0102908
ASP232721:2:Tyes-0-76
ASP62928:0:Tyes0102
ASP62977:0:Tyes999-9990
ASP76114:2:Tyes2120
BABO262698:0:Tno-0--
BABO262698:1:Tno---0
BAMB339670:2:Tno---0
BAMB339670:3:Tno-0--
BAMB398577:2:Tno---0
BAMB398577:3:Tno-0--
BAMY326423:0:Tyes-1148-0
BANT260799:0:Tno-3175-0
BANT261594:2:Tno-3110-0
BANT568206:2:Tyes-637-0
BANT592021:2:Tno-3299-0
BAPH198804:0:Tyes---0
BAPH372461:0:Tyes---0
BBAC264462:0:Tyes---0
BBAC360095:0:Tyes-730-0
BBRO257310:0:Tyes-0-1
BCAN483179:0:Tno-0--
BCAN483179:1:Tno---0
BCEN331271:1:Tno---0
BCEN331271:2:Tno-0--
BCEN331272:2:Tyes---0
BCEN331272:3:Tyes-0--
BCER226900:1:Tyes-3251-0
BCER288681:0:Tno-3105-0
BCER315749:1:Tyes-1890-0
BCER405917:1:Tyes-3146-0
BCER572264:1:Tno-3283-0
BCIC186490:0:Tyes1-10
BCLA66692:0:Tyes-18160-
BHAL272558:0:Tyes-1119-0
BHEN283166:0:Tyes-0-714
BJAP224911:0:Fyes-4565-0
BLIC279010:0:Tyes-1401-0
BLON206672:0:Tyes0---
BMAL243160:0:Tno---0
BMAL243160:1:Tno-0--
BMAL320388:0:Tno---0
BMAL320388:1:Tno-0--
BMAL320389:0:Tyes---0
BMAL320389:1:Tyes-0--
BMEL224914:0:Tno-0--
BMEL224914:1:Tno---0
BMEL359391:0:Tno-0--
BMEL359391:1:Tno---0
BOVI236:0:Tyes-0--
BOVI236:1:Tyes---0
BPAR257311:0:Tno-0-1
BPER257313:0:Tyes-2-0
BPET94624:0:Tyes-0-1
BPSE272560:0:Tyes---0
BPSE272560:1:Tyes-0--
BPSE320372:0:Tno---0
BPSE320372:1:Tno-0--
BPSE320373:0:Tno---0
BPSE320373:1:Tno-0--
BPUM315750:0:Tyes-1186-0
BQUI283165:0:Tyes-0-569
BSP107806:2:Tyes---0
BSP36773:1:Tyes---0
BSP36773:2:Tyes-0--
BSP376:0:Tyes-398922440
BSUB:0:Tyes-1282-0
BSUI204722:0:Tyes-0--
BSUI204722:1:Tyes---0
BSUI470137:0:Tno-0--
BSUI470137:1:Tno---0
BTHA271848:0:Tno---0
BTHA271848:1:Tno-0--
BTHE226186:0:Tyes---0
BTHU281309:1:Tno-3096-0
BTHU412694:1:Tno-2876-0
BTRI382640:1:Tyes-0-1029
BVIE269482:6:Tyes---0
BVIE269482:7:Tyes-0--
BWEI315730:4:Tyes-3019-0
BXEN266265:1:Tyes--3860
CACE272562:1:Tyes-1588-0
CAULO:0:Tyes-2412-0
CBEI290402:0:Tyes-3391-0
CBLO203907:0:Tyes-120
CBLO291272:0:Tno-120
CBOT36826:1:Tno-0--
CBOT441770:0:Tyes-0--
CBOT441771:0:Tno-0--
CBOT515621:2:Tyes-0--
CBUR227377:1:Tyes70907091
CBUR360115:1:Tno0118101182
CBUR434922:2:Tno71407141
CCON360104:2:Tyes-0--
CCUR360105:0:Tyes-0--
CDES477974:0:Tyes-0-848
CDIF272563:1:Tyes-2524-0
CHOM360107:1:Tyes-0--
CHUT269798:0:Tyes-1292-0
CHYD246194:0:Tyes-1160-0
CJAP155077:0:Tyes1-10
CKLU431943:1:Tyes---0
CMAQ397948:0:Tyes0---
CMIC31964:2:Tyes---0
CMIC443906:2:Tyes---0
CNOV386415:0:Tyes---0
CPEL335992:0:Tyes01003-227
CPER195102:1:Tyes---0
CPER195103:0:Tno---0
CPER289380:3:Tyes---0
CPHY357809:0:Tyes---0
CPSY167879:0:Tyes0159815991597
CRUT413404:0:Tyes01020
CSAL290398:0:Tyes1351102
CSP501479:7:Fyes-287-0
CSP78:2:Tyes-1395-0
CTEP194439:0:Tyes-0--
CVES412965:0:Tyes01021
CVIO243365:0:Tyes9689679680
DARO159087:0:Tyes-340
DDES207559:0:Tyes-0--
DETH243164:0:Tyes-14-0
DGEO319795:1:Tyes-0--
DHAF138119:0:Tyes-0-1732
DNOD246195:0:Tyes-1022-0
DOLE96561:0:Tyes-90-0
DPSY177439:2:Tyes-0-1690
DRAD243230:3:Tyes-0--
DRED349161:0:Tyes-0-1736
DSHI398580:5:Tyes-0-322
DSP216389:0:Tyes---0
DSP255470:0:Tno---0
DVUL882:1:Tyes-1360-0
ECAN269484:0:Tyes4060-404
ECAR218491:0:Tyes2380295129500
ECHA205920:0:Tyes-0-594
ECOL199310:0:Tno0948947954
ECOL316407:0:Tno0736735741
ECOL331111:6:Tno0882881888
ECOL362663:0:Tno0814813819
ECOL364106:1:Tno0905904910
ECOL405955:2:Tyes0893892898
ECOL409438:6:Tyes0799798805
ECOL413997:0:Tno0715714720
ECOL439855:4:Tno0848847853
ECOL469008:0:Tno694560
ECOL481805:0:Tno729560
ECOL585034:0:Tno0813812818
ECOL585035:0:Tno0975974980
ECOL585055:0:Tno0911910916
ECOL585056:2:Tno0895894900
ECOL585057:0:Tno0112011191125
ECOL585397:0:Tno0945944950
ECOL83334:0:Tno0780779785
ECOLI:0:Tno0771770776
ECOO157:0:Tno0784783789
EFAE226185:3:Tyes15190--
EFER585054:1:Tyes0213521342136
ELIT314225:0:Tyes-0-885
ERUM254945:0:Tyes-0-441
ERUM302409:0:Tno-0-436
ESP42895:1:Tyes0622621630
FALN326424:0:Tyes---0
FJOH376686:0:Tyes---0
FMAG334413:1:Tyes-0-369
FNUC190304:0:Tyes-0-12
FPHI484022:1:Tyes-476-0
FRANT:0:Tno-905-0
FSP106370:0:Tyes---0
FSUC59374:0:Tyes0--1585
FTUL351581:0:Tno-0-802
FTUL393011:0:Tno-0-700
FTUL393115:0:Tyes-895-0
FTUL401614:0:Tyes-0-457
FTUL418136:0:Tno-790-0
FTUL458234:0:Tno-0-718
GBET391165:0:Tyes-0-1619
GFOR411154:0:Tyes---0
GKAU235909:1:Tyes-1567-0
GMET269799:1:Tyes-1723-0
GOXY290633:5:Tyes-0-611
GSUL243231:0:Tyes-0-1350
GTHE420246:1:Tyes-1428-0
GURA351605:0:Tyes-1597-0
GVIO251221:0:Tyes-0-698
HARS204773:0:Tyes-0-2
HAUR316274:2:Tyes-0--
HCHE349521:0:Tyes-102
HDUC233412:0:Tyes4454444450
HHAL349124:0:Tyes182180
HINF281310:0:Tyes010264
HINF374930:0:Tyes2602592600
HINF71421:0:Tno010258
HMOD498761:0:Tyes-262-0
HNEP81032:0:Tyes-1980-0
HSOM205914:1:Tyes8898888890
HSOM228400:0:Tno010422
ILOI283942:0:Tyes0102
JSP290400:1:Tyes-0-178
JSP375286:0:Tyes-0-1
KPNE272620:2:Tyes0776775786
LACI272621:0:Tyes-0--
LBRE387344:2:Tyes-189-0
LCAS321967:1:Tyes---0
LCHO395495:0:Tyes-111416740
LDEL390333:0:Tyes-0--
LGAS324831:0:Tyes-0--
LHEL405566:0:Tyes-0--
LINN272626:1:Tno-0-883
LINT363253:3:Tyes-0--
LJOH257314:0:Tyes-0--
LLAC272622:5:Tyes-0--
LLAC272623:0:Tyes-683-0
LMES203120:1:Tyes-0--
LMON169963:0:Tno-0-818
LMON265669:0:Tyes-0-800
LPLA220668:0:Tyes2144947-0
LPNE272624:0:Tno03270328
LPNE297245:1:Fno02780279
LPNE297246:1:Fyes02980299
LPNE400673:0:Tno03030304
LREU557436:0:Tyes-465-0
LSAK314315:0:Tyes-660-0
LSPH444177:1:Tyes-2829-0
LWEL386043:0:Tyes-0-795
LXYL281090:0:Tyes0---
MAER449447:0:Tyes-0-1366
MAQU351348:2:Tyes3093120
MCAP243233:0:Tyes0102
MEXT419610:0:Tyes-2599-0
MFLA265072:0:Tyes-120
MLOT266835:2:Tyes-0-2734
MMAG342108:0:Tyes01316-2122
MMAR394221:0:Tyes7321672-0
MMYC272632:0:Tyes-0--
MPET420662:1:Tyes1212135912120
MSP266779:3:Tyes-0-1850
MSP400668:0:Tyes671-10
MSP409:2:Tyes-0-188
MSUC221988:0:Tyes6160610
MTHE264732:0:Tyes-0--
MXAN246197:0:Tyes-02552565
NARO279238:0:Tyes-0-1013
NEUR228410:0:Tyes0102
NEUT335283:2:Tyes0102
NGON242231:0:Tyes-6956940
NHAM323097:2:Tyes-1653-0
NMEN122586:0:Tno-01703
NMEN122587:0:Tyes-5625630
NMEN272831:0:Tno-5455460
NMEN374833:0:Tno-01-
NMUL323848:3:Tyes2120
NOCE323261:1:Tyes0102
NSEN222891:0:Tyes---0
NSP103690:6:Tyes0---
NSP387092:0:Tyes-0--
NWIN323098:0:Tyes-1558-0
OANT439375:4:Tyes-0--
OANT439375:5:Tyes---0
OCAR504832:0:Tyes-1461-0
OIHE221109:0:Tyes-1058-0
PAER208963:0:Tyes966120
PAER208964:0:Tno2899120
PARC259536:0:Tyes969-9690
PATL342610:0:Tyes1879120
PCAR338963:0:Tyes-0-1213
PCRY335284:1:Tyes971-9710
PDIS435591:0:Tyes---0
PENT384676:0:Tyes-120
PFLU205922:0:Tyes0431343124314
PFLU216595:1:Tyes0421420422
PFLU220664:0:Tyes0462846274629
PGIN242619:0:Tyes---0
PHAL326442:1:Tyes0227222712273
PING357804:0:Tyes101141
PLUM243265:0:Fyes0102
PLUT319225:0:Tyes-0--
PMAR146891:0:Tyes-0--
PMAR167539:0:Tyes-958-0
PMAR167540:0:Tyes-0--
PMAR167542:0:Tyes-0--
PMAR167546:0:Tyes-0--
PMAR167555:0:Tyes-1242-0
PMAR59920:0:Tno-0-923
PMAR74546:0:Tyes-0--
PMAR74547:0:Tyes-88-0
PMAR93060:0:Tyes-0--
PMEN399739:0:Tyes0740739741
PMOB403833:0:Tyes-0--
PMUL272843:1:Tyes4594584590
PNAP365044:8:Tyes-0-340
PPEN278197:0:Tyes-0-487
PPRO298386:2:Tyes2120
PPUT160488:0:Tno-120
PPUT351746:0:Tyes-120
PPUT76869:0:Tno-120
PRUM264731:0:Tyes---0
PSP117:0:Tyes---0
PSP296591:2:Tyes-0-1673
PSP312153:0:Tyes-0-1429
PSP56811:2:Tyes890-8900
PSTU379731:0:Tyes418120
PSYR205918:0:Tyes0364136403642
PSYR223283:2:Tyes637120
PTHE370438:0:Tyes-0-1053
RALB246199:0:Tyes-0--
RBEL336407:0:Tyes---0
RBEL391896:0:Fno---0
RCAS383372:0:Tyes-0--
RCON272944:0:Tno---0
RDEN375451:4:Tyes-2774-0
RETL347834:5:Tyes-0-2238
REUT264198:3:Tyes-0-308
REUT381666:2:Tyes-0-2073
RFEL315456:2:Tyes---0
RFER338969:1:Tyes-627-0
RLEG216596:6:Tyes-0-2753
RMAS416276:1:Tyes---0
RMET266264:2:Tyes-0-2086
RPAL258594:0:Tyes-2879-0
RPAL316055:0:Tyes-3281-0
RPAL316056:0:Tyes-2197-0
RPAL316057:0:Tyes-2584-0
RPAL316058:0:Tyes-212632410
RPOM246200:1:Tyes-0-3498
RRIC392021:0:Fno---0
RRIC452659:0:Tyes---0
RRUB269796:1:Tyes-0-376
RSOL267608:1:Tyes-329-0
RSP357808:0:Tyes-0--
RSPH272943:4:Tyes-2573-0
RSPH349101:2:Tno-2521-0
RSPH349102:5:Tyes-0-2669
RXYL266117:0:Tyes-0--
SACI330779:0:Tyes0-0-
SACI56780:0:Tyes---0
SAGA205921:0:Tno-0-520
SAGA208435:0:Tno-0-591
SAGA211110:0:Tyes-0-562
SALA317655:1:Tyes-0-1691
SAUR158878:1:Tno-0-735
SAUR158879:1:Tno-0-730
SAUR196620:0:Tno-0-772
SAUR273036:0:Tno-0-741
SAUR282458:0:Tno-0-780
SAUR282459:0:Tno-0-697
SAUR359786:1:Tno-0-699
SAUR359787:1:Tno-0-660
SAUR367830:3:Tno-0-707
SAUR418127:0:Tyes-0-733
SAUR426430:0:Tno-0-726
SAUR93061:0:Fno-0-917
SAUR93062:1:Tno-0-632
SAVE227882:1:Fyes---0
SBAL399599:3:Tyes1594120
SBAL402882:1:Tno1539120
SBOY300268:1:Tyes0547546553
SDEG203122:0:Tyes3-30
SDEN318161:0:Tyes0492491493
SDYS300267:1:Tyes0692691695
SELO269084:0:Tyes-1784-0
SENT209261:0:Tno0102
SENT220341:0:Tno0102
SENT295319:0:Tno0102
SENT321314:2:Tno0102
SENT454169:2:Tno0102
SEPI176279:1:Tyes-0-725
SEPI176280:0:Tno-0-654
SFLE198214:0:Tyes0709708714
SFLE373384:0:Tno0699698704
SFUM335543:0:Tyes---0
SGLO343509:3:Tyes2120
SGOR29390:0:Tyes-1001-0
SHAE279808:0:Tyes-606-0
SHAL458817:0:Tyes1659230
SHIGELLA:0:Tno0701700706
SLAC55218:1:Fyes-0-324
SLOI323850:0:Tyes1455120
SMED366394:3:Tyes-0-2005
SMEL266834:2:Tyes-0-1812
SMUT210007:0:Tyes-758-0
SONE211586:1:Tyes1604120
SPEA398579:0:Tno742230
SPNE1313:0:Tyes-599-0
SPNE170187:0:Tyes-0-1495
SPNE171101:0:Tno-625-0
SPNE487213:0:Tno-1101-0
SPNE487214:0:Tno-677-0
SPNE488221:0:Tno-644-0
SPRO399741:1:Tyes0988987989
SPYO160490:0:Tno-0-778
SPYO186103:0:Tno-0-829
SPYO193567:0:Tno-994-0
SPYO198466:0:Tno-0-993
SPYO286636:0:Tno-097891
SPYO293653:0:Tno-0-887
SPYO319701:0:Tyes-0-899
SPYO370551:0:Tno-0-842
SPYO370552:0:Tno-0-907
SPYO370553:0:Tno-0--
SPYO370554:0:Tyes-0-860
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