CANDIDATE ID: 875

CANDIDATE ID: 875

NUMBER OF GENES: 4
AVERAGE SCORE:    9.9916083e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages




GENE LIST:

- EG11577 (leuB) (b0073)
   Products of gene:
     - 3-ISOPROPYLMALDEHYDROG-MONOMER (LeuB)
     - 3-ISOPROPYLMALDEHYDROG-CPLX (3-isopropylmalate dehydrogenase)
       Reactions:
        (2R,3S)-3-isopropylmalate + NAD+  =  (2S)-2-isopropyl-3-oxosuccinate + NADH + H+
         In pathways
         BRANCHED-CHAIN-AA-SYN-PWY (superpathway of leucine, valine, and isoleucine biosynthesis)
         LEUSYN-PWY (leucine biosynthesis)

- EG11576 (leuC) (b0072)
   Products of gene:
     - LEUC-MONOMER (LeuC)
     - 3-ISOPROPYLMALISOM-CPLX (isopropylmalate isomerase)
       Reactions:
        2-isopropylmaleate + H2O  ->  (2R,3S)-3-isopropylmalate
         In pathways
         BRANCHED-CHAIN-AA-SYN-PWY (superpathway of leucine, valine, and isoleucine biosynthesis)
         LEUSYN-PWY (leucine biosynthesis)
        (2S)-2-isopropylmalate  =  2-isopropylmaleate + H2O
         In pathways
         BRANCHED-CHAIN-AA-SYN-PWY (superpathway of leucine, valine, and isoleucine biosynthesis)
         LEUSYN-PWY (leucine biosynthesis)

- EG11226 (leuA) (b0074)
   Products of gene:
     - 2-ISOPROPYLMALATESYN-MONOMER (2-isopropylmalate synthase)
       Reactions:
        2-oxoisovalerate + acetyl-CoA + H2O  ->  (2S)-2-isopropylmalate + coenzyme A + H+
         In pathways
         BRANCHED-CHAIN-AA-SYN-PWY (superpathway of leucine, valine, and isoleucine biosynthesis)
         LEUSYN-PWY (leucine biosynthesis)

- EG11086 (ftsL) (b0083)
   Products of gene:
     - EG11086-MONOMER (essential cell division protein FtsL)



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ORGANISMS CONTAINING AT LEAST 3 GENES FROM THE GROUP:

Total number of orgs: 290
Effective number of orgs (counting one per cluster within 468 clusters): 203

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM43
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317584
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329534
YPES386656 ncbi Yersinia pestis Pestoides F4
YPES377628 ncbi Yersinia pestis Nepal5164
YPES360102 ncbi Yersinia pestis Antiqua4
YPES349746 ncbi Yersinia pestis Angola4
YPES214092 ncbi Yersinia pestis CO924
YPES187410 ncbi Yersinia pestis KIM 104
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80814
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A3
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110183
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103313
XFAS405440 ncbi Xylella fastidiosa M123
XFAS183190 ncbi Xylella fastidiosa Temecula13
XFAS160492 ncbi Xylella fastidiosa 9a5c3
XCAM487884 Xanthomonas campestris pv. paulliniae3
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-103
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80043
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339133
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3063
XAUT78245 ncbi Xanthobacter autotrophicus Py23
VVUL216895 ncbi Vibrio vulnificus CMCP64
VVUL196600 ncbi Vibrio vulnificus YJ0164
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106334
VFIS312309 ncbi Vibrio fischeri ES1144
VEIS391735 ncbi Verminephrobacter eiseniae EF01-23
VCHO345073 ncbi Vibrio cholerae O3954
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169614
TTUR377629 ncbi Teredinibacter turnerae T79013
TTHE300852 ncbi Thermus thermophilus HB83
TTHE262724 ncbi Thermus thermophilus HB273
TELO197221 ncbi Thermosynechococcus elongatus BP-13
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252593
TCRU317025 ncbi Thiomicrospira crunogena XCL-23
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT24
STHE322159 ncbi Streptococcus thermophilus LMD-93
STHE299768 ncbi Streptococcus thermophilus CNRZ10663
STHE292459 ncbi Symbiobacterium thermophilum IAM 148633
STHE264199 ncbi Streptococcus thermophilus LMG 183113
SSUI391296 ncbi Streptococcus suis 98HAH333
SSUI391295 ncbi Streptococcus suis 05ZYH333
SSP94122 ncbi Shewanella sp. ANA-34
SSP84588 ncbi Synechococcus sp. WH 81023
SSP64471 ncbi Synechococcus sp. CC93113
SSP644076 Silicibacter sp. TrichCH4B3
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)3
SSP321327 ncbi Synechococcus sp. JA-3-3Ab3
SSP292414 ncbi Ruegeria sp. TM10403
SSP1148 ncbi Synechocystis sp. PCC 68033
SSP1131 Synechococcus sp. CC96053
SSON300269 ncbi Shigella sonnei Ss0464
SSED425104 ncbi Shewanella sediminis HAW-EB34
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153053
SRUB309807 ncbi Salinibacter ruber DSM 138553
SPRO399741 ncbi Serratia proteamaculans 5684
SPEA398579 ncbi Shewanella pealeana ATCC 7003454
SONE211586 ncbi Shewanella oneidensis MR-14
SMUT210007 ncbi Streptococcus mutans UA1593
SLOI323850 ncbi Shewanella loihica PV-44
SLAC55218 Ruegeria lacuscaerulensis3
SHIGELLA ncbi Shigella flexneri 2a str. 2457T4
SHAL458817 ncbi Shewanella halifaxensis HAW-EB44
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14353
SGOR29390 Streptococcus gordonii Challis3
SGLO343509 ncbi Sodalis glossinidius morsitans4
SFLE373384 ncbi Shigella flexneri 5 str. 84014
SFLE198214 ncbi Shigella flexneri 2a str. 3014
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122283
SEPI176279 ncbi Staphylococcus epidermidis RP62A3
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4764
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B674
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91504
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT184
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty24
SELO269084 ncbi Synechococcus elongatus PCC 63013
SDYS300267 ncbi Shigella dysenteriae Sd1974
SDEN318161 ncbi Shewanella denitrificans OS2174
SDEG203122 ncbi Saccharophagus degradans 2-403
SBOY300268 ncbi Shigella boydii Sb2274
SBAL402882 ncbi Shewanella baltica OS1854
SBAL399599 ncbi Shewanella baltica OS1954
SAUR93062 ncbi Staphylococcus aureus aureus COL3
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83253
SAUR426430 ncbi Staphylococcus aureus aureus Newman3
SAUR418127 ncbi Staphylococcus aureus aureus Mu33
SAUR367830 Staphylococcus aureus aureus USA3003
SAUR359787 ncbi Staphylococcus aureus aureus JH13
SAUR359786 ncbi Staphylococcus aureus aureus JH93
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4763
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2523
SAUR273036 ncbi Staphylococcus aureus RF1223
SAUR196620 ncbi Staphylococcus aureus aureus MW23
SAUR158879 ncbi Staphylococcus aureus aureus N3153
SAUR158878 ncbi Staphylococcus aureus aureus Mu503
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99413
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170253
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170293
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.13
RSP357808 ncbi Roseiflexus sp. RS-13
RSOL267608 ncbi Ralstonia solanacearum GMI10003
RPOM246200 ncbi Ruegeria pomeroyi DSS-33
RPAL316058 ncbi Rhodopseudomonas palustris HaA23
RPAL316057 ncbi Rhodopseudomonas palustris BisB53
RPAL316056 ncbi Rhodopseudomonas palustris BisB183
RPAL316055 ncbi Rhodopseudomonas palustris BisA533
RPAL258594 ncbi Rhodopseudomonas palustris CGA0093
RMET266264 ncbi Ralstonia metallidurans CH343
RFER338969 ncbi Rhodoferax ferrireducens T1183
REUT381666 ncbi Ralstonia eutropha H163
REUT264198 ncbi Ralstonia eutropha JMP1343
RDEN375451 ncbi Roseobacter denitrificans OCh 1143
RCAS383372 ncbi Roseiflexus castenholzii DSM 139413
PSTU379731 ncbi Pseudomonas stutzeri A15013
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-13
PSP296591 ncbi Polaromonas sp. JS6663
PSP117 Pirellula sp.3
PRUM264731 ncbi Prevotella ruminicola 233
PPRO298386 ncbi Photobacterium profundum SS94
PNAP365044 ncbi Polaromonas naphthalenivorans CJ23
PMUL272843 ncbi Pasteurella multocida multocida Pm704
PMEN399739 ncbi Pseudomonas mendocina ymp3
PMAR93060 ncbi Prochlorococcus marinus MIT 92153
PMAR74547 ncbi Prochlorococcus marinus MIT 93133
PMAR74546 ncbi Prochlorococcus marinus MIT 93123
PMAR59920 ncbi Prochlorococcus marinus NATL2A3
PMAR167555 ncbi Prochlorococcus marinus NATL1A3
PMAR167546 ncbi Prochlorococcus marinus MIT 93013
PMAR167542 ncbi Prochlorococcus marinus MIT 95153
PMAR167540 Prochlorococcus marinus pastoris MED4ax3
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13753
PMAR146891 ncbi Prochlorococcus marinus AS96013
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO14
PING357804 ncbi Psychromonas ingrahamii 374
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1254
PDIS435591 ncbi Parabacteroides distasonis ATCC 85033
PATL342610 ncbi Pseudoalteromonas atlantica T6c4
OIHE221109 ncbi Oceanobacillus iheyensis HTE8313
OCAR504832 ncbi Oligotropha carboxidovorans OM53
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2553
NSP103690 ncbi Nostoc sp. PCC 71203
NOCE323261 ncbi Nitrosococcus oceani ATCC 197073
NMUL323848 ncbi Nitrosospira multiformis ATCC 251963
NMEN374833 ncbi Neisseria meningitidis 0534423
NMEN272831 ncbi Neisseria meningitidis FAM183
NMEN122587 ncbi Neisseria meningitidis Z24913
NMEN122586 ncbi Neisseria meningitidis MC583
NHAM323097 ncbi Nitrobacter hamburgensis X143
NGON242231 ncbi Neisseria gonorrhoeae FA 10903
NEUT335283 ncbi Nitrosomonas eutropha C913
NEUR228410 ncbi Nitrosomonas europaea ATCC 197183
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E4
MSP409 Methylobacterium sp.3
MPET420662 ncbi Methylibium petroleiphilum PM13
MMAR394221 ncbi Maricaulis maris MCS103
MMAG342108 ncbi Magnetospirillum magneticum AMB-13
MFLA265072 ncbi Methylobacillus flagellatus KT4
MEXT419610 ncbi Methylobacterium extorquens PA13
MCAP243233 ncbi Methylococcus capsulatus Bath3
MAQU351348 ncbi Marinobacter aquaeolei VT84
MAER449447 ncbi Microcystis aeruginosa NIES-8433
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53343
LSPH444177 ncbi Lysinibacillus sphaericus C3-413
LMON265669 ncbi Listeria monocytogenes 4b F23653
LMON169963 ncbi Listeria monocytogenes EGD-e3
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82933
LLAC272622 ncbi Lactococcus lactis cremoris SK113
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1303
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566013
LINN272626 ncbi Listeria innocua Clip112623
LCHO395495 ncbi Leptothrix cholodnii SP-63
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1973
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5503
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)3
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)3
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785784
JSP375286 ncbi Janthinobacterium sp. Marseille3
JSP290400 ncbi Jannaschia sp. CCS13
HSOM228400 ncbi Haemophilus somnus 23364
HSOM205914 ncbi Haemophilus somnus 129PT4
HNEP81032 Hyphomonas neptunium3
HINF71421 ncbi Haemophilus influenzae Rd KW204
HINF374930 ncbi Haemophilus influenzae PittEE4
HINF281310 ncbi Haemophilus influenzae 86-028NP4
HHAL349124 ncbi Halorhodospira halophila SL13
HCHE349521 ncbi Hahella chejuensis KCTC 23963
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237793
HARS204773 ncbi Herminiimonas arsenicoxydans3
GVIO251221 ncbi Gloeobacter violaceus PCC 74213
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-23
GOXY290633 ncbi Gluconobacter oxydans 621H3
GKAU235909 ncbi Geobacillus kaustophilus HTA4263
GFOR411154 ncbi Gramella forsetii KT08033
GBET391165 ncbi Granulibacter bethesdensis CGDNIH13
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S853
FJOH376686 ncbi Flavobacterium johnsoniae UW1013
ESP42895 Enterobacter sp.4
EFER585054 ncbi Escherichia fergusonii ATCC 354694
ECOO157 ncbi Escherichia coli O157:H7 EDL9334
ECOL83334 Escherichia coli O157:H74
ECOL585397 ncbi Escherichia coli ED1a4
ECOL585057 ncbi Escherichia coli IAI394
ECOL585056 ncbi Escherichia coli UMN0264
ECOL585055 ncbi Escherichia coli 559894
ECOL585035 ncbi Escherichia coli S884
ECOL585034 ncbi Escherichia coli IAI14
ECOL481805 ncbi Escherichia coli ATCC 87394
ECOL469008 ncbi Escherichia coli BL21(DE3)4
ECOL439855 ncbi Escherichia coli SMS-3-54
ECOL413997 ncbi Escherichia coli B str. REL6064
ECOL409438 ncbi Escherichia coli SE114
ECOL405955 ncbi Escherichia coli APEC O14
ECOL364106 ncbi Escherichia coli UTI894
ECOL362663 ncbi Escherichia coli 5364
ECOL331111 ncbi Escherichia coli E24377A4
ECOL316407 ncbi Escherichia coli K-12 substr. W31104
ECOL199310 ncbi Escherichia coli CFT0734
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10434
DSHI398580 ncbi Dinoroseobacter shibae DFL 123
DARO159087 ncbi Dechloromonas aromatica RCB3
CVIO243365 ncbi Chromobacterium violaceum ATCC 124723
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA3
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS3
CSP78 Caulobacter sp.3
CSP501479 Citreicella sp. SE453
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)3
CPSY167879 ncbi Colwellia psychrerythraea 34H4
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10623
CJEJ407148 ncbi Campylobacter jejuni jejuni 811163
CJEJ360109 ncbi Campylobacter jejuni doylei 269.973
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1763
CJEJ195099 ncbi Campylobacter jejuni RM12213
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111683
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334063
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN4
CBLO203907 ncbi Candidatus Blochmannia floridanus4
CAULO ncbi Caulobacter crescentus CB153
BWEI315730 ncbi Bacillus weihenstephanensis KBAB43
BVIE269482 ncbi Burkholderia vietnamiensis G43
BTHU412694 ncbi Bacillus thuringiensis Al Hakam3
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-273
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54823
BTHA271848 ncbi Burkholderia thailandensis E2643
BSUB ncbi Bacillus subtilis subtilis 1683
BSP376 Bradyrhizobium sp.3
BSP36773 Burkholderia sp.3
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)3
BPUM315750 ncbi Bacillus pumilus SAFR-0323
BPSE320373 ncbi Burkholderia pseudomallei 6683
BPSE320372 ncbi Burkholderia pseudomallei 1710b3
BPSE272560 ncbi Burkholderia pseudomallei K962433
BMAL320389 ncbi Burkholderia mallei NCTC 102473
BMAL320388 ncbi Burkholderia mallei SAVP13
BLIC279010 ncbi Bacillus licheniformis ATCC 145803
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1103
BHAL272558 ncbi Bacillus halodurans C-1253
BFRA295405 ncbi Bacteroides fragilis YCH463
BFRA272559 ncbi Bacteroides fragilis NCTC 93433
BCLA66692 ncbi Bacillus clausii KSM-K163
BCER572264 ncbi Bacillus cereus 03BB1023
BCER405917 Bacillus cereus W3
BCER315749 ncbi Bacillus cytotoxicus NVH 391-983
BCER288681 ncbi Bacillus cereus E33L3
BCER226900 ncbi Bacillus cereus ATCC 145793
BCEN331272 ncbi Burkholderia cenocepacia HI24243
BCEN331271 ncbi Burkholderia cenocepacia AU 10543
BANT592021 ncbi Bacillus anthracis A02483
BANT568206 ncbi Bacillus anthracis CDC 6843
BANT261594 ncbi Bacillus anthracis Ames Ancestor3
BANT260799 ncbi Bacillus anthracis Sterne3
BAMY326423 ncbi Bacillus amyloliquefaciens FZB423
BAMB398577 ncbi Burkholderia ambifaria MC40-63
BAMB339670 ncbi Burkholderia ambifaria AMMD3
AVAR240292 ncbi Anabaena variabilis ATCC 294133
ASP76114 ncbi Aromatoleum aromaticum EbN13
ASP62928 ncbi Azoarcus sp. BH723
ASP232721 ncbi Acidovorax sp. JS423
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4494
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL034
APLE416269 ncbi Actinobacillus pleuropneumoniae L204
AMAR329726 ncbi Acaryochloris marina MBIC110173
AHYD196024 Aeromonas hydrophila dhakensis4
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232703
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-13
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C3
ACRY349163 ncbi Acidiphilium cryptum JF-53
ACAU438753 ncbi Azorhizobium caulinodans ORS 5713
ABOR393595 ncbi Alcanivorax borkumensis SK23
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3453
AAVE397945 ncbi Acidovorax citrulli AAC00-13


Names of the homologs of the genes in the group in each of these orgs
  EG11577   EG11576   EG11226   EG11086   
ZMOB264203 ZMO0677ZMO0105ZMO1835
YPSE349747 YPSIP31758_3406YPSIP31758_3407YPSIP31758_3405YPSIP31758_3394
YPSE273123 YPTB0671YPTB0670YPTB0672YPTB0681
YPES386656 YPDSF_3107YPDSF_3108YPDSF_3106YPDSF_3094
YPES377628 YPN_0402YPN_0401YPN_0403YPN_0414
YPES360102 YPA_3565YPA_3566YPA_3564YPA_3553
YPES349746 YPANGOLA_A2937YPANGOLA_A2938YPANGOLA_A2936YPANGOLA_A2925
YPES214092 YPO0532YPO0531YPO0533YPO0548
YPES187410 Y3646Y3647Y3645Y3633
YENT393305 YE0653YE0652YE0654YE0665
XORY360094 XOOORF_4464XOOORF_4467XOOORF_4462
XORY342109 XOO0860XOO0857XOO0861
XORY291331 XOO0940XOO0936XOO0941
XFAS405440 XFASM12_1539XFASM12_1542XFASM12_1205
XFAS183190 PD_1397PD_1399PD_1047
XFAS160492 XF2372XF2375XF1818
XCAM487884 XCC-B100_0869XCC-B100_0866XCC-B100_0870
XCAM316273 XCAORF_3661XCAORF_3664XCAORF_3659
XCAM314565 XC_0836XC_0833XC_0837
XCAM190485 XCC3328XCC3331XCC3327
XAXO190486 XAC3456XAC3458XAC3455
XAUT78245 XAUT_2589XAUT_1180XAUT_1329
VVUL216895 VV1_0655VV1_0656VV1_0654VV1_0585
VVUL196600 VV0486VV0485VV0487VV0607
VPAR223926 VP0344VP0343VP0346VP0453
VFIS312309 VF0294VF0293VF0295VF2208
VEIS391735 VEIS_1047VEIS_1049VEIS_3626
VCHO345073 VC0395_A2066VC0395_A2067VC0395_A2065VC0395_A1986
VCHO VC2491VC2492VC2490VC2408
TTUR377629 TERTU_2500TERTU_2502TERTU_3419
TTHE300852 TTHA1230TTHA1228TTHA1210
TTHE262724 TT_C0867TT_C0865TT_C0849
TELO197221 TLR1600TLR0909TLL1397
TDEN292415 TBD_1920TBD_1922TBD_1986
TCRU317025 TCR_0797TCR_0795TCR_0611
STYP99287 STM0112STM0111STM0113STM0121
STHE322159 STER_1170STER_1168STER_1171
STHE299768 STR1202STR1201STR1203
STHE292459 STH3035STH2116STH2687
STHE264199 STU1202STU1201STU1203
SSUI391296 SSU98_1953SSU98_1952SSU98_1954
SSUI391295 SSU05_1948SSU05_1947SSU05_1949
SSP94122 SHEWANA3_3760SHEWANA3_3759SHEWANA3_3761SHEWANA3_3750
SSP84588 SYNW0784OR1664SYNW0262OR1282SYNW0730OR1620
SSP64471 GSYN1830GSYN0323GSYN1052
SSP644076 SCH4B_3679SCH4B_2679SCH4B_1384
SSP321332 CYB_1631CYB_0327CYB_1442
SSP321327 CYA_1798CYA_0286CYA_2223
SSP292414 TM1040_3762TM1040_2508TM1040_2282
SSP1148 SLR1517SLL1470SLR0186
SSP1131 SYNCC9605_1865SYNCC9605_0256SYNCC9605_1939
SSON300269 SSO_0080SSO_0079SSO_0081SSO_0091
SSED425104 SSED_0394SSED_0395SSED_0393SSED_0403
SSAP342451 SSP0820SSP0819SSP0821
SRUB309807 SRU_2148SRU_2150SRU_2149
SPRO399741 SPRO_0744SPRO_0743SPRO_0745SPRO_0754
SPEA398579 SPEA_3827SPEA_3826SPEA_3828SPEA_3818
SONE211586 SO_4235SO_4234SO_4236SO_4226
SMUT210007 SMU_1383SMU_1382SMU_1384
SLOI323850 SHEW_3471SHEW_3470SHEW_3472SHEW_3460
SLAC55218 SL1157_0889SL1157_0882SL1157_0568
SHIGELLA LEUBLEUCLEUAFTSL
SHAL458817 SHAL_0439SHAL_0440SHAL_0438SHAL_0448
SHAE279808 SH0975SH0974SH0976
SGOR29390 SGO_0907SGO_0909SGO_0906
SGLO343509 SG0436SG0435SG0437SG0442
SFLE373384 SFV_0065SFV_0064SFV_0066SFV_0076
SFLE198214 AAN41733.1AAN41732.1AAN41734.1AAN41745.1
SEPI176280 SE_1659SE_1660SE_1658
SEPI176279 SERP1670SERP1671SERP1669
SENT454169 SEHA_C0123SEHA_C0122SEHA_C0124SEHA_C0133
SENT321314 SCH_0108SCH_0107SCH_0109SCH_0118
SENT295319 SPA0114SPA0113SPA0115SPA0123
SENT220341 STY0131STY0130STY0132STY0141
SENT209261 T0116T0115T0117T0125
SELO269084 SYC2490_CSYC2197_DSYC0145_D
SDYS300267 SDY_0100SDY_0099SDY_0101SDY_0113
SDEN318161 SDEN_0335SDEN_0336SDEN_0334SDEN_0348
SDEG203122 SDE_2084SDE_2086SDE_2523
SBOY300268 SBO_0060SBO_0059SBO_0061SBO_0071
SBAL402882 SHEW185_0386SHEW185_0387SHEW185_0385SHEW185_0394
SBAL399599 SBAL195_0398SBAL195_0399SBAL195_0397SBAL195_0406
SAUR93062 SACOL2047SACOL2048SACOL2046
SAUR93061 SAOUHSC_02286SAOUHSC_02287SAOUHSC_02285
SAUR426430 NWMN_1964NWMN_1965NWMN_1963
SAUR418127 SAHV_2043SAHV_2044SAHV_2042
SAUR367830 SAUSA300_2011SAUSA300_2012SAUSA300_2010
SAUR359787 SAURJH1_2132SAURJH1_2133SAURJH1_2131
SAUR359786 SAURJH9_2095SAURJH9_2096SAURJH9_2094
SAUR282459 SAS1963SAS1964SAS1962
SAUR282458 SAR2145SAR2146SAR2144
SAUR273036 SAB1943SAB1944SAB1942
SAUR196620 MW1982MW1983MW1981
SAUR158879 SA1863SA1864SA1862
SAUR158878 SAV2058SAV2059SAV2057
RXYL266117 RXYL_3130RXYL_0278RXYL_3129
RSPH349102 RSPH17025_0162RSPH17025_0158RSPH17025_1598
RSPH349101 RSPH17029_2518RSPH17029_2523RSPH17029_1005
RSPH272943 RSP_0859RSP_0863RSP_2330
RSP357808 ROSERS_1958ROSERS_1961ROSERS_1965
RSOL267608 RSC1988RSC1990RSC2072
RPOM246200 SPO_0210SPO_0216SPO_0422
RPAL316058 RPB_0335RPB_0348RPB_3330
RPAL316057 RPD_0490RPD_0504RPD_2112
RPAL316056 RPC_0240RPC_0227RPC_3235
RPAL316055 RPE_0480RPE_0332RPE_2209
RPAL258594 RPA0227RPA0240RPA2046
RMET266264 RMET_2472RMET_4273RMET_0918
RFER338969 RFER_1793RFER_1795RFER_2345
REUT381666 H16_A2619H16_A2621H16_A1041
REUT264198 REUT_A2311REUT_A2314REUT_A0953
RDEN375451 RD1_0228RD1_0616RD1_1211
RCAS383372 RCAS_1546RCAS_1549RCAS_1553
PSTU379731 PST_1774PST_1772PST_3240
PSP312153 PNUC_0767PNUC_0764PNUC_1058
PSP296591 BPRO_3610BPRO_3608BPRO_2322
PSP117 RB12597RB12656RB12756
PRUM264731 GFRORF0733GFRORF0730GFRORF0729
PPRO298386 PBPRA0418PBPRA0417PBPRA0419PBPRA3222
PNAP365044 PNAP_3041PNAP_3039PNAP_1721
PMUL272843 PM1961PM1960PM1962PM0135
PMEN399739 PMEN_2721PMEN_2723PMEN_0989
PMAR93060 P9215_08811P9215_02801P9215_12011
PMAR74547 PMT0531PMT1844PMT1121
PMAR74546 PMT9312_0794PMT9312_0258PMT9312_1077
PMAR59920 PMN2A_0194PMN2A_1622PMN2A_0686
PMAR167555 NATL1_08261NATL1_03341NATL1_15201
PMAR167546 P9301ORF_0863P9301ORF_0282P9301ORF_1193
PMAR167542 P9515ORF_0836P9515ORF_0300P9515ORF_1208
PMAR167540 PMM0786PMM0256PMM1066
PMAR167539 PRO_0862PRO_0288PRO_1134
PMAR146891 A9601_08501A9601_02781A9601_11711
PLUM243265 PLU3674PLU3675PLU3673PLU3661
PING357804 PING_2229PING_1669PING_0216PING_1140
PHAL326442 PSHAA2893PSHAA2892PSHAA2894PSHAA2511
PDIS435591 BDI_2059BDI_2063BDI_2064
PATL342610 PATL_3269PATL_3270PATL_3268PATL_3526
OIHE221109 OB2619OB2618OB2620
OCAR504832 OCAR_4283OCAR_4273OCAR_5296
NWIN323098 NWI_2795NWI_2785NWI_2338
NSP103690 ALR1313ALL1417ALR4840
NOCE323261 NOC_1014NOC_2935NOC_2516
NMUL323848 NMUL_A1918NMUL_A1921NMUL_A0453
NMEN374833 NMCC_1164NMCC_1159NMCC_0988
NMEN272831 NMC1182NMC1176NMC1034
NMEN122587 NMA1456NMA1450NMA1270
NMEN122586 NMB_1031NMB_1036NMB_1070
NHAM323097 NHAM_3595NHAM_3584NHAM_2715
NGON242231 NGO0674NGO0679NGO0848
NEUT335283 NEUT_1147NEUT_1144NEUT_1244
NEUR228410 NE0688NE0685NE1320
MSUC221988 MS0598MS0596MS0599MS1674
MSP409 M446_6646M446_0819M446_1444
MPET420662 MPE_A2162MPE_A2164MPE_A2101
MMAR394221 MMAR10_0283MMAR10_0285MMAR10_0287
MMAG342108 AMB4069AMB4067AMB3512
MFLA265072 MFLA_1703MFLA_1705MFLA_0517MFLA_2276
MEXT419610 MEXT_2524MEXT_4355MEXT_2674
MCAP243233 MCA_2063MCA_2065MCA_2275
MAQU351348 MAQU_1563MAQU_1565MAQU_2477MAQU_2459
MAER449447 MAE_00210MAE_53130MAE_54460
LWEL386043 LWE2007LWE2008LWE2006
LSPH444177 BSPH_3385BSPH_3384BSPH_3386
LMON265669 LMOF2365_2011LMOF2365_2012LMOF2365_2010
LMON169963 LMO1988LMO1989LMO1987
LMES203120 LEUM_2031LEUM_2030LEUM_2032
LLAC272622 LACR_1320LACR_1317LACR_1323
LINT267671 LIC_11768LIC_11822LIC_11726
LINT189518 LA2152LA2095LA2202
LINN272626 LIN2095LIN2096LIN2094
LCHO395495 LCHO_1677LCHO_1675LCHO_2888
LBOR355277 LBJ_1863LBJ_1913LBJ_1362
LBOR355276 LBL_1421LBL_1371LBL_1587
LBIF456481 LEPBI_I2317LEPBI_I1625LEPBI_I1845
LBIF355278 LBF_2251LBF_1575LBF_1792
KPNE272620 GKPORF_B4358GKPORF_B4357GKPORF_B4359GKPORF_B4366
JSP375286 MMA_2169MMA_2172MMA_2145
JSP290400 JANN_0128JANN_0135JANN_3643
HSOM228400 HSM_0716HSM_0715HSM_0717HSM_0621
HSOM205914 HS_0391HS_0390HS_0392HS_0351
HNEP81032 HNE_0056HNE_1477HNE_0440
HINF71421 HI_0987HI_0988HI_0986HI_1131
HINF374930 CGSHIEE_07030CGSHIEE_07025CGSHIEE_07035CGSHIEE_06395
HINF281310 NTHI1161NTHI1162NTHI1160NTHI1298
HHAL349124 HHAL_1810HHAL_1812HHAL_0690
HCHE349521 HCH_02430HCH_02428HCH_05908
HAUR316274 HAUR_4439HAUR_4441HAUR_4446
HARS204773 HEAR1217HEAR1215HEAR1242
GVIO251221 GLL3551GLR3417GLL2290
GTHE420246 GTNG_2586GTNG_2585GTNG_2587
GOXY290633 GOX0191GOX0193GOX1733
GKAU235909 GK2657GK2656GK2658
GFOR411154 GFO_2098GFO_2096GFO_2095
GBET391165 GBCGDNIH1_1678GBCGDNIH1_1680GBCGDNIH1_1472
FSUC59374 FSU3213FSU0466FSU2908
FJOH376686 FJOH_1304FJOH_1307FJOH_2865
ESP42895 ENT638_0621ENT638_0620ENT638_0622ENT638_0629
EFER585054 EFER_0095EFER_0094EFER_0096EFER_0105
ECOO157 LEUBLEUCLEUAFTSL
ECOL83334 ECS0077ECS0076ECS0078ECS0087
ECOL585397 ECED1_0073ECED1_0072ECED1_0074ECED1_0084
ECOL585057 ECIAI39_0078ECIAI39_0077ECIAI39_0079ECIAI39_0086
ECOL585056 ECUMN_0075ECUMN_0074ECUMN_0076ECUMN_0083
ECOL585055 EC55989_0071EC55989_0070EC55989_0072EC55989_0079
ECOL585035 ECS88_0078ECS88_0077ECS88_0079ECS88_0086
ECOL585034 ECIAI1_0074ECIAI1_0073ECIAI1_0075ECIAI1_0082
ECOL481805 ECOLC_3584ECOLC_3585ECOLC_3583ECOLC_3574
ECOL469008 ECBD_3543ECBD_3544ECBD_3542ECBD_3534
ECOL439855 ECSMS35_0078ECSMS35_0077ECSMS35_0079ECSMS35_0088
ECOL413997 ECB_00075ECB_00074ECB_00076ECB_00084
ECOL409438 ECSE_0073ECSE_0072ECSE_0074ECSE_0085
ECOL405955 APECO1_1910APECO1_1911APECO1_1909APECO1_1903
ECOL364106 UTI89_C0080UTI89_C0079UTI89_C0081UTI89_C0092
ECOL362663 ECP_0075ECP_0074ECP_0076ECP_0085
ECOL331111 ECE24377A_0076ECE24377A_0075ECE24377A_0077ECE24377A_0085
ECOL316407 ECK0075:JW5807:B0073ECK0074:JW0071:B0072ECK0076:JW0073:B0074ECK0084:JW0081:B0083
ECOL199310 C0090C0089C0091C0101
ECAR218491 ECA3832ECA3833ECA3831ECA3822
DSHI398580 DSHI_0081DSHI_0085DSHI_0596
DARO159087 DARO_0864DARO_0861DARO_3071
CVIO243365 CV_2778CV_2784CV_0595
CVES412965 COSY_0103COSY_0350COSY_0415
CSUL444179 SMGWSS_040SMGWSS_042SMGWSS_043
CSP78 CAUL_0213CAUL_0216CAUL_1485
CSP501479 CSE45_0315CSE45_0307CSE45_3330
CRUT413404 RMAG_0099RMAG_0372RMAG_0449
CPSY167879 CPS_4209CPS_4210CPS_4208CPS_4472
CPEL335992 SAR11_0250SAR11_0252SAR11_1374
CJEJ407148 C8J_1624C8J_1623C8J_1625
CJEJ360109 JJD26997_2095JJD26997_2094JJD26997_2096
CJEJ354242 CJJ81176_0016CJJ81176_0015CJJ81176_0017
CJEJ195099 CJE_1888CJE_1887CJE_1889
CJEJ192222 CJ1718CCJ1717CCJ1719C
CHUT269798 CHU_3744CHU_3742CHU_3741
CBLO291272 BPEN_136BPEN_135BPEN_137BPEN_139
CBLO203907 BFL132BFL131BFL133BFL135
CAULO CC0193CC0196CC1541
BWEI315730 BCERKBAB4_1323BCERKBAB4_1324BCERKBAB4_1322
BVIE269482 BCEP1808_4457BCEP1808_4454BCEP1808_2344
BTHU412694 BALH_1256BALH_1257BALH_1255
BTHU281309 BT9727_1285BT9727_1286BT9727_1284
BTHE226186 BT_1857BT_1860BT_1861
BTHA271848 BTH_II0674BTH_II0672BTH_I1050
BSUB BSU28270BSU28260BSU28280
BSP376 BRADO0353BRADO0374BRADO5528
BSP36773 BCEP18194_B2131BCEP18194_B2133BCEP18194_A5587
BSP107806 BUPL05BUPL06BUPL04
BPUM315750 BPUM_2468BPUM_2467BPUM_2469
BPSE320373 BURPS668_A2451BURPS668_A2454BURPS668_1279
BPSE320372 BURPS1710B_B0915BURPS1710B_B0918BURPS1710B_A1505
BPSE272560 BPSS1705BPSS1707BPSL1201
BMAL320389 BMA10247_A0523BMA10247_A0520BMA10247_0401
BMAL320388 BMASAVP1_1643BMASAVP1_1641BMASAVP1_A1118
BLIC279010 BL00612BL00613BL00611
BJAP224911 BLL0504BLR0488BLL6435
BHAL272558 BH3057BH3056BH3058
BFRA295405 BF3444BF3447BF3448
BFRA272559 BF3263BF3266BF3267
BCLA66692 ABC2641ABC2640ABC2642
BCER572264 BCA_1456BCA_1457BCA_1455
BCER405917 BCE_1521BCE_1522BCE_1520
BCER315749 BCER98_1124BCER98_1125BCER98_1123
BCER288681 BCE33L1286BCE33L1287BCE33L1285
BCER226900 BC_1401BC_1402BC_1400
BCEN331272 BCEN2424_3952BCEN2424_3949BCEN2424_2259
BCEN331271 BCEN_4415BCEN_4418BCEN_1648
BANT592021 BAA_1488BAA_1489BAA_1487
BANT568206 BAMEG_3174BAMEG_3173BAMEG_3175
BANT261594 GBAA1421GBAA1422GBAA1420
BANT260799 BAS1312BAS1313BAS1311
BAMY326423 RBAM_025330RBAM_025320RBAM_025340
BAMB398577 BAMMC406_3847BAMMC406_3844BAMMC406_2176
BAMB339670 BAMB_3343BAMB_3340BAMB_2298
AVAR240292 AVA_2987AVA_3967AVA_2111
ASP76114 EBA4760EBA4757EBA7154
ASP62928 AZO1041AZO1039AZO3162
ASP232721 AJS_3233AJS_3229AJS_1774
ASAL382245 ASA_3410ASA_3411ASA_3409ASA_0391
APLE434271 APJL_0458APJL_0140APJL_0414APJL_0012
APLE416269 APL_0432APL_0139APL_0393APL_0011
AMAR329726 AM1_0898AM1_4505AM1_0705
AHYD196024 AHA_0881AHA_0880AHA_0882AHA_3891
AFER243159 AFE_1020AFE_2415AFE_0506
AEHR187272 MLG_1230MLG_1228MLG_0551
ADEH290397 ADEH_2070ADEH_1980ADEH_1981
ACRY349163 ACRY_2147ACRY_2149ACRY_0534
ACAU438753 AZC_0304AZC_4061AZC_3545
ABOR393595 ABO_1467ABO_1470ABO_0638
ABAC204669 ACID345_2917ACID345_2916ACID345_2918
AAVE397945 AAVE_1221AAVE_1223AAVE_3108


Organism features enriched in list (features available for 272 out of the 290 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Clusters 0.00035601517
Arrangment:Pairs 0.006546063112
Disease:Food_poisoning 0.000974999
Disease:Gastroenteritis 0.00470261113
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 0.00020421111
Endospores:No 1.854e-672211
GC_Content_Range4:0-40 2.042e-673213
GC_Content_Range4:40-60 0.0000823126224
GC_Content_Range7:0-30 4.169e-8547
GC_Content_Range7:50-60 0.000047068107
Genome_Size_Range5:0-2 1.197e-1827155
Genome_Size_Range5:4-6 3.435e-21138184
Genome_Size_Range9:0-1 0.0014681527
Genome_Size_Range9:1-2 3.964e-1522128
Genome_Size_Range9:4-5 3.156e-86996
Genome_Size_Range9:5-6 3.751e-116988
Gram_Stain:Gram_Neg 1.115e-7186333
Gram_Stain:Gram_Pos 0.000212552150
Habitat:Host-associated 0.002209081206
Habitat:Specialized 0.00950091753
Habitat:Terrestrial 0.00306932231
Motility:No 0.000017649151
Motility:Yes 7.030e-8156267
Optimal_temp.:- 0.0002369140257
Optimal_temp.:30-37 0.00001771718
Optimal_temp.:37 4.946e-727106
Oxygen_Req:Anaerobic 1.804e-1513102
Oxygen_Req:Facultative 3.030e-13135201
Shape:Rod 0.0003612181347
Shape:Sphere 0.0038020319
Temp._range:Mesophilic 0.0015205234473



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 235
Effective number of orgs (counting one per cluster within 468 clusters): 181

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I1
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TLET416591 ncbi Thermotoga lettingae TMO0
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12511
TDEN243275 ncbi Treponema denticola ATCC 354050
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
STRO369723 ncbi Salinispora tropica CNB-4401
STOK273063 ncbi Sulfolobus tokodaii 71
SSOL273057 ncbi Sulfolobus solfataricus P21
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370552 ncbi Streptococcus pyogenes MGAS102700
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103940
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SPNE488221 ncbi Streptococcus pneumoniae 705851
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-141
SPNE171101 ncbi Streptococcus pneumoniae R61
SPNE170187 ncbi Streptococcus pneumoniae G541
SPNE1313 Streptococcus pneumoniae1
SMAR399550 ncbi Staphylothermus marinus F10
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23381
SCO ncbi Streptomyces coelicolor A3(2)1
SAVE227882 ncbi Streptomyces avermitilis MA-46801
SARE391037 ncbi Salinispora arenicola CNS-2051
SAGA211110 ncbi Streptococcus agalactiae NEM3160
SAGA208435 ncbi Streptococcus agalactiae 2603V/R0
SAGA205921 ncbi Streptococcus agalactiae A9090
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6391
RTYP257363 ncbi Rickettsia typhi Wilmington0
RSP101510 ncbi Rhodococcus jostii RHA11
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332091
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RMAS416276 ncbi Rickettsia massiliae MTU50
RFEL315456 ncbi Rickettsia felis URRWXCal20
RCON272944 ncbi Rickettsia conorii Malish 70
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RALB246199 Ruminococcus albus 80
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97901
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257450
PISL384616 ncbi Pyrobaculum islandicum DSM 41841
PINT246198 Prevotella intermedia 170
PHOR70601 ncbi Pyrococcus horikoshii OT30
PGIN242619 ncbi Porphyromonas gingivalis W830
PFUR186497 ncbi Pyrococcus furiosus DSM 36381
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135141
PAER178306 ncbi Pyrobaculum aerophilum IM21
PACN267747 ncbi Propionibacterium acnes KPA1712020
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
NSP35761 Nocardioides sp.1
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NFAR247156 ncbi Nocardia farcinica IFM 101521
MXAN246197 ncbi Myxococcus xanthus DK 16220
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-11
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra1
MTUB336982 ncbi Mycobacterium tuberculosis F111
MTHE349307 ncbi Methanosaeta thermophila PT1
MTBRV ncbi Mycobacterium tuberculosis H37Rv1
MTBCDC ncbi Mycobacterium tuberculosis CDC15511
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30911
MSP189918 ncbi Mycobacterium sp. KMS1
MSP164757 ncbi Mycobacterium sp. JLS1
MSP164756 ncbi Mycobacterium sp. MCS1
MSME246196 ncbi Mycobacterium smegmatis MC2 1551
MSED399549 ncbi Metallosphaera sedula DSM 53481
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go11
MMAR444158 ncbi Methanococcus maripaludis C61
MMAR426368 ncbi Methanococcus maripaludis C71
MMAR402880 ncbi Methanococcus maripaludis C51
MMAR368407 ncbi Methanoculleus marisnigri JR11
MMAR267377 ncbi Methanococcus maripaludis S21
MLEP272631 ncbi Mycobacterium leprae TN1
MLAB410358 ncbi Methanocorpusculum labreanum Z1
MKAN190192 ncbi Methanopyrus kandleri AV191
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26611
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-11
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK1
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBUR259564 ncbi Methanococcoides burtonii DSM 62421
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P21
MBOV233413 ncbi Mycobacterium bovis AF2122/971
MBAR269797 ncbi Methanosarcina barkeri Fusaro1
MAVI243243 ncbi Mycobacterium avium 1041
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAEO419665 ncbi Methanococcus aeolicus Nankai-31
MACE188937 ncbi Methanosarcina acetivorans C2A1
MABS561007 ncbi Mycobacterium abscessus ATCC 199771
LXYL281090 ncbi Leifsonia xyli xyli CTCB071
LSAK314315 ncbi Lactobacillus sakei sakei 23K0
LREU557436 ncbi Lactobacillus reuteri DSM 200160
LPNE400673 ncbi Legionella pneumophila Corby0
LPNE297246 ncbi Legionella pneumophila Paris0
LPNE297245 ncbi Legionella pneumophila Lens0
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 10
LPLA220668 ncbi Lactobacillus plantarum WCFS10
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-000
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LCAS321967 ncbi Lactobacillus casei ATCC 3340
LBRE387344 ncbi Lactobacillus brevis ATCC 3670
LACI272621 ncbi Lactobacillus acidophilus NCFM0
KRAD266940 ncbi Kineococcus radiotolerans SRS302161
ILOI283942 ncbi Idiomarina loihiensis L2TR1
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I1
HSP64091 ncbi Halobacterium sp. NRC-10
HSAL478009 ncbi Halobacterium salinarum R10
HPYL85963 ncbi Helicobacter pylori J990
HPYL357544 ncbi Helicobacter pylori HPAG10
HPY ncbi Helicobacter pylori 266950
HHEP235279 ncbi Helicobacter hepaticus ATCC 514491
HDUC233412 ncbi Haemophilus ducreyi 35000HP0
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HACI382638 ncbi Helicobacter acinonychis Sheeba0
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-001
FTUL418136 ncbi Francisella tularensis tularensis WY96-34180
FTUL393115 ncbi Francisella tularensis tularensis FSC1980
FTUL393011 ncbi Francisella tularensis holarctica OSU181
FTUL351581 Francisella tularensis holarctica FSC2001
FSP1855 Frankia sp. EAN1pec1
FSP106370 ncbi Frankia sp. CcI31
FRANT ncbi Francisella tularensis tularensis SCHU S40
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255860
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B10
FMAG334413 ncbi Finegoldia magna ATCC 293280
FALN326424 ncbi Frankia alni ACN14a1
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
EFAE226185 ncbi Enterococcus faecalis V5830
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DPSY177439 ncbi Desulfotalea psychrophila LSv541
DNOD246195 ncbi Dichelobacter nodosus VCS1703A0
DHAF138119 ncbi Desulfitobacterium hafniense Y511
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTET212717 ncbi Clostridium tetani E880
CTEP194439 ncbi Chlorobium tepidum TLS1
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE250
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPER289380 ncbi Clostridium perfringens SM1010
CPER195103 ncbi Clostridium perfringens ATCC 131240
CPER195102 ncbi Clostridium perfringens 130
CNOV386415 ncbi Clostridium novyi NT0
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3821
CMIC31964 ncbi Clavibacter michiganensis sepedonicus1
CMET456442 ncbi Candidatus Methanoregula boonei 6A81
CMAQ397948 ncbi Caldivirga maquilingensis IC-1671
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF81
CJEI306537 ncbi Corynebacterium jeikeium K4111
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130321
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CEFF196164 ncbi Corynebacterium efficiens YS-3141
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131291
CDIF272563 ncbi Clostridium difficile 6301
CCHL340177 ncbi Chlorobium chlorochromatii CaD31
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1110
CBUR360115 ncbi Coxiella burnetii RSA 3310
CBUR227377 ncbi Coxiella burnetii RSA 4930
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto0
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6570
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B1
CBOT498213 ncbi Clostridium botulinum B1 str. Okra0
CBOT441772 ncbi Clostridium botulinum F str. Langeland0
CBOT441771 ncbi Clostridium botulinum A str. Hall0
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193970
CBOT36826 Clostridium botulinum A0
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80521
CACE272562 ncbi Clostridium acetobutylicum ATCC 8241
CABO218497 ncbi Chlamydophila abortus S26/30
BTUR314724 ncbi Borrelia turicatae 91E1350
BTRI382640 ncbi Bartonella tribocorum CIP 1054760
BQUI283165 ncbi Bartonella quintana Toulouse0
BOVI236 Brucella ovis1
BLON206672 ncbi Bifidobacterium longum NCC27051
BHER314723 ncbi Borrelia hermsii DAH0
BHEN283166 ncbi Bartonella henselae Houston-10
BGAR290434 ncbi Borrelia garinii PBi0
BCIC186490 Candidatus Baumannia cicadellinicola0
BBUR224326 ncbi Borrelia burgdorferi B310
BBAC360095 ncbi Bartonella bacilliformis KC5830
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1000
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)1
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP1667 Arthrobacter sp.1
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K10
AORE350688 ncbi Alkaliphilus oremlandii OhILAs0
ANAE240017 Actinomyces oris MG11
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
ACEL351607 ncbi Acidothermus cellulolyticus 11B1
AAUR290340 ncbi Arthrobacter aurescens TC11


Names of the homologs of the genes in the group in each of these orgs
  EG11577   EG11576   EG11226   EG11086   
WPIP955
WPIP80849
UURE95667
UURE95664
UPAR505682
UMET351160 RCIX673
TWHI218496
TWHI203267
TVOL273116
TPEN368408
TPAL243276
TLET416591
TKOD69014
TDEN326298 TMDEN_1101
TDEN243275
TACI273075
STRO369723 STROP_1258
STOK273063 ST0538
SSOL273057 SSO2407
SPYO370554
SPYO370553
SPYO370552
SPYO370551
SPYO319701
SPYO293653
SPYO286636
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SPNE488221 SP70585_1320
SPNE487213 SPT_0971
SPNE171101 SPR1135
SPNE170187 SPN10046
SPNE1313 SPJ_1171
SMAR399550
SERY405948 SACE_6144
SCO SCO5553
SAVE227882 SAV2686
SARE391037 SARE_1149
SAGA211110
SAGA208435
SAGA205921
SACI330779 SACI_0940
RTYP257363
RSP101510 RHA1_RO00727
RSAL288705 RSAL33209_1790
RRIC452659
RRIC392021
RPRO272947
RMAS416276
RFEL315456
RCON272944
RCAN293613
RBEL391896
RBEL336407
RALB246199
RAKA293614
PTOR263820 PTO0913
PPEN278197
PISL384616 PISL_1814
PINT246198
PHOR70601
PGIN242619
PFUR186497 PF0937
PAST100379
PARS340102 PARS_2063
PAER178306 PAE1993
PACN267747
OTSU357244
NSP35761 NOCA_3298
NSEN222891
NFAR247156 NFA42120
MXAN246197
MVAN350058 MVAN_2135
MTUB419947 MRA_3017
MTUB336982 TBFG_13003
MTHE349307 MTHE_1298
MTBRV RV2988C
MTBCDC MT3066
MSYN262723
MSTA339860 MSP_0199
MSP189918 MKMS_1967
MSP164757 MJLS_1901
MSP164756 MMCS_1921
MSME246196 MSMEG_2387
MSED399549 MSED_0623
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAZ192952 MM1284
MMAR444158 MMARC6_1596
MMAR426368 MMARC7_0316
MMAR402880 MMARC5_0531
MMAR368407 MEMAR_1069
MMAR267377 MMP1063
MLEP272631 ML1685
MLAB410358 MLAB_0603
MKAN190192 MK0391
MJAN243232 MJ_1195
MHYO295358
MHYO262722
MHYO262719
MHUN323259 MHUN_1243
MGIL350054 MFLV_4227
MGEN243273
MFLO265311
MCAP340047
MBUR259564 MBUR_0711
MBOV410289 BCG_3009C
MBOV233413 MB3012C
MBAR269797 MBAR_A0942
MAVI243243 MAV_3838
MART243272
MAEO419665 MAEO_0849
MACE188937 MA4615
MABS561007 MAB_3294C
LXYL281090 LXX09660
LSAK314315
LREU557436
LPNE400673
LPNE297246
LPNE297245
LPNE272624
LPLA220668
LJOH257314
LINT363253
LHEL405566
LGAS324831
LDEL390333
LDEL321956
LCAS321967
LBRE387344
LACI272621
KRAD266940 KRAD_1358
ILOI283942 IL0429
IHOS453591 IGNI_0983
HSP64091
HSAL478009
HPYL85963
HPYL357544
HPY
HHEP235279 HH_1134
HDUC233412
HBUT415426
HACI382638
FTUL458234 FTA_1999
FTUL418136
FTUL393115
FTUL393011 FTH_1814
FTUL351581 FTL_1889
FSP1855 FRANEAN1_1113
FSP106370 FRANCCI3_3621
FRANT
FNUC190304
FNOD381764
FMAG334413
FALN326424 FRAAL5829
ERUM302409
ERUM254945
EFAE226185
ECHA205920
ECAN269484
DPSY177439 DP1284
DNOD246195
DHAF138119 DSY1371
CTRA471473
CTRA471472
CTET212717
CTEP194439 CT_0615
CPRO264201
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPER289380
CPER195103
CPER195102
CNOV386415
CMUR243161
CMIC443906 CMM_1341
CMIC31964 CMS2052
CMET456442 MBOO_1442
CMAQ397948 CMAQ_1171
CKOR374847 KCR_0193
CJEI306537 JK1221
CGLU196627 CG1487
CFEL264202
CEFF196164 CE1427
CDIP257309 DIP1127
CDIF272563 CD0992
CCHL340177 CAG_1901
CCAV227941
CBUR434922
CBUR360115
CBUR227377
CBOT536232
CBOT515621
CBOT508765 CLL_A0324
CBOT498213
CBOT441772
CBOT441771
CBOT441770
CBOT36826
CBEI290402 CBEI_0216
CACE272562 CAC3171
CABO218497
BTUR314724
BTRI382640
BQUI283165
BOVI236 GBOORFA0917
BLON206672 BL1262
BHER314723
BHEN283166
BGAR290434
BCIC186490
BBUR224326
BBAC360095
BBAC264462
BAPH372461
BAPH198804 BUSG217
BAFZ390236
AYEL322098
AURANTIMONAS
ASP1667 ARTH_2519
APHA212042
APER272557
AORE350688
ANAE240017 ANA_0432
AMAR234826
ALAI441768
ACEL351607 ACEL_1591
AAUR290340 AAUR_2486


Organism features enriched in list (features available for 218 out of the 235 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Pairs 0.000394027112
Disease:Botulism 0.007101555
Disease:Pharyngitis 0.000352288
Disease:Tularemia 0.007101555
Disease:Wide_range_of_infections 0.00001701111
Disease:bronchitis_and_pneumonitis 0.000352288
Endospores:No 8.491e-10113211
GC_Content_Range4:0-40 2.869e-15124213
GC_Content_Range4:40-60 8.555e-757224
GC_Content_Range4:60-100 0.000203237145
GC_Content_Range7:0-30 2.287e-134147
GC_Content_Range7:30-40 0.000032883166
GC_Content_Range7:50-60 2.397e-718107
GC_Content_Range7:60-70 1.950e-628134
GC_Content_Range7:70-100 0.0028580911
Genome_Size_Range5:0-2 3.760e-27114155
Genome_Size_Range5:4-6 7.933e-1627184
Genome_Size_Range5:6-10 0.00681531047
Genome_Size_Range9:0-1 1.858e-62227
Genome_Size_Range9:1-2 1.719e-1992128
Genome_Size_Range9:4-5 2.790e-71596
Genome_Size_Range9:5-6 8.893e-81288
Genome_Size_Range9:6-8 0.0005256538
Gram_Stain:Gram_Neg 1.178e-1382333
Gram_Stain:Gram_Pos 3.648e-884150
Habitat:Aquatic 0.00297292391
Habitat:Host-associated 4.752e-8107206
Habitat:Multiple 0.001078351178
Motility:No 2.006e-885151
Motility:Yes 2.844e-1064267
Optimal_temp.:- 0.000046074257
Optimal_temp.:37 4.225e-1068106
Oxygen_Req:Anaerobic 2.039e-659102
Oxygen_Req:Facultative 0.000576158201
Pathogenic_in:Human 0.002794394213
Pathogenic_in:No 0.006249772226
Salinity:Non-halophilic 0.001191853106
Shape:Irregular_coccus 0.00088311317
Shape:Rod 0.0001914110347
Shape:Sphere 0.00002641619
Temp._range:Hyperthermophilic 0.00112531623



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ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 1
Effective number of orgs (counting one per cluster within 468 clusters): 1

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS 0.0034222643


Names of the homologs of the genes in the group in each of these orgs
  EG11577   EG11576   EG11226   EG11086   
CSUL444179 SMGWSS_040SMGWSS_042SMGWSS_043


Organism features enriched in list (features available for 1 out of the 1 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  



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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
BRANCHED-CHAIN-AA-SYN-PWY (superpathway of leucine, valine, and isoleucine biosynthesis)4582860.5310
SULFATE-CYS-PWY (superpathway of sulfate assimilation and cysteine biosynthesis)3652480.5102
PWY-5340 (sulfate activation for sulfonation)3852500.4688
SO4ASSIM-PWY (sulfate reduction I (assimilatory))3112170.4649
METSYN-PWY (homoserine and methionine biosynthesis)3972490.4297
PWY-5386 (methylglyoxal degradation I)3052070.4186
ILEUSYN-PWY (isoleucine biosynthesis I (from threonine))5052860.4182
HISTSYN-PWY (histidine biosynthesis)4992840.4168
MET-SAM-PWY (superpathway of S-adenosyl-L-methionine biosynthesis)3922450.4166
PWY-5837 (1,4-dihydroxy-2-naphthoate biosynthesis I)2281680.4133
HOMOSER-METSYN-PWY (methionine biosynthesis I)4192550.4112
VALSYN-PWY (valine biosynthesis)5152880.4103
ACETATEUTIL-PWY (superpathway of acetate utilization and formation)2371720.4088
PWY-6317 (galactose degradation I (Leloir pathway))4642710.4060
ARO-PWY (chorismate biosynthesis I)5102860.4059
PENTOSE-P-PWY (pentose phosphate pathway)3942440.4044
OXIDATIVEPENT-PWY (pentose phosphate pathway (oxidative branch))4042480.4040
PWY-4041 (γ-glutamyl cycle)2791920.4020
NAGLIPASYN-PWY (lipid IVA biosynthesis)3482240.4019
THISYN-PWY (thiamin biosynthesis I)5022830.4012



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG11576   EG11226   EG11086   
EG115770.9999440.9997770.998504
EG115760.9996380.998516
EG112260.998586
EG11086



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PAIRWISE BLAST SCORES:

  EG11577   EG11576   EG11226   EG11086   
EG115770.0f0---
EG11576-0.0f0--
EG11226--0.0f0-
EG11086---0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- LEUSYN-PWY (leucine biosynthesis) (degree of match pw to cand: 0.500, degree of match cand to pw: 0.750, average score: 0.956)
  Genes in pathway or complex:
   *in cand* 0.9996 0.9985 EG11577 (leuB) 3-ISOPROPYLMALDEHYDROG-MONOMER (LeuB)
             0.9254 0.7186 EG10497 (ilvE) BRANCHED-CHAINAMINOTRANSFER-MONOMER (IlvE)
             0.7843 0.5978 EG11040 (tyrB) TYRB-MONOMER (TyrB)
   *in cand* 0.9995 0.9986 EG11226 (leuA) 2-ISOPROPYLMALATESYN-MONOMER (2-isopropylmalate synthase)
             0.9995 0.9985 EG11575 (leuD) LEUD-MONOMER (LeuD)
   *in cand* 0.9995 0.9985 EG11576 (leuC) LEUC-MONOMER (LeuC)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9989 0.9985 EG11086 (ftsL) EG11086-MONOMER (essential cell division protein FtsL)

- BRANCHED-CHAIN-AA-SYN-PWY (superpathway of leucine, valine, and isoleucine biosynthesis) (degree of match pw to cand: 0.187, degree of match cand to pw: 0.750, average score: 0.935)
  Genes in pathway or complex:
             0.9995 0.9985 EG11575 (leuD) LEUD-MONOMER (LeuD)
   *in cand* 0.9995 0.9985 EG11576 (leuC) LEUC-MONOMER (LeuC)
   *in cand* 0.9995 0.9986 EG11226 (leuA) 2-ISOPROPYLMALATESYN-MONOMER (2-isopropylmalate synthase)
             0.7843 0.5978 EG11040 (tyrB) TYRB-MONOMER (TyrB)
   *in cand* 0.9996 0.9985 EG11577 (leuB) 3-ISOPROPYLMALDEHYDROG-MONOMER (LeuB)
             0.9052 0.7870 EG10493 (ilvA) THREDEHYDSYN-MONOMER (IlvA)
             0.8249 0.7746 EG10501 (ilvM) SMALLILVM-MONOMER (IlvM)
                NIL    NIL EG10498 (ilvG_2) LARGEILVG-MONOMER (acetolactate synthase II, large subunit, C-ter fragment (pseudogene))
                NIL    NIL G8221 (ilvG_1) G8221-MONOMER (acetolactate synthase II, large subunit, N-ter fragment (pseudogene))
             0.9787 0.9178 EG10502 (ilvN) SMALLILVN-MONOMER (IlvN)
             0.9774 0.9126 EG10494 (ilvB) LARGEILVB-MONOMER (IlvB)
             0.9989 0.9975 EG10499 (ilvH) ACETOLACTSYNIII-HCHAIN-MONOMER (IlvH)
             0.9987 0.9973 EG10500 (ilvI) ACETOLACTSYNIII-ICHAIN-MONOMER (IlvI)
             0.9305 0.7264 EG10495 (ilvC) KETOLREDUCTOISOM-MONOMER (IlvC)
             0.9254 0.7186 EG10497 (ilvE) BRANCHED-CHAINAMINOTRANSFER-MONOMER (IlvE)
             0.9740 0.9029 EG10496 (ilvD) DIHYDROXYACIDDEHYDRAT-MONOMER (IlvD)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9989 0.9985 EG11086 (ftsL) EG11086-MONOMER (essential cell division protein FtsL)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG11226 EG11576 EG11577 (centered at EG11577)
EG11086 (centered at EG11086)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  EG11577   EG11576   EG11226   EG11086   
399/623384/623373/62385/623
AAEO224324:0:Tyes0-1305-
AAUR290340:2:Tyes-0--
AAVE397945:0:Tyes021860-
ABAC204669:0:Tyes102-
ABAU360910:0:Tyes02--
ABOR393595:0:Tyes8488510-
ABUT367737:0:Tyes555-0-
ACAU438753:0:Tyes038013277-
ACEL351607:0:Tyes-0--
ACRY349163:8:Tyes162016220-
ADEH290397:0:Tyes9001-
AEHR187272:0:Tyes6746720-
AFER243159:0:Tyes50218800-
AFUL224325:0:Tyes400-0-
AHYD196024:0:Tyes1022903
AMAR329726:9:Tyes18937650-
AMET293826:0:Tyes0-3-
ANAE240017:0:Tyes-0--
APLE416269:0:Tyes4291333890
APLE434271:0:Tno4361313970
ASAL382245:5:Tyes2900290128990
ASP1667:3:Tyes-0--
ASP232721:2:Tyes141214080-
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