CANDIDATE ID: 878

CANDIDATE ID: 878

NUMBER OF GENES: 4
AVERAGE SCORE:    9.9952133e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    2.5000000e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G6816 (ydfI) (b1542)
   Products of gene:
     - G6816-MONOMER (predicted mannonate dehydrogenase)

- EG20248 (uxuB) (b4323)
   Products of gene:
     - MANNONOXIDOREDUCT-MONOMER (D-mannonate oxidoreductase)
       Reactions:
        NAD+ + D-mannonate  =  D-fructuronate + NADH + H+
         In pathways
         GALACT-GLUCUROCAT-PWY (superpathway of hexuronide and hexuronate degradation)
         PWY-6516 (PWY-6516)
         GLUCUROCAT-PWY (β-D-glucuronide and D-glucuronate degradation)

- EG12036 (yeiQ) (b2172)
   Products of gene:
     - EG12036-MONOMER (predicted dehydrogenase, NAD-dependent)

- EG11066 (uxuA) (b4322)
   Products of gene:
     - MANNONDEHYDRAT-MONOMER (D-mannonate dehydratase)
       Reactions:
        D-mannonate  ->  2-dehydro-3-deoxy-D-gluconate + H2O
         In pathways
         GALACT-GLUCUROCAT-PWY (superpathway of hexuronide and hexuronate degradation)
         PWY-6516 (PWY-6516)
         GLUCUROCAT-PWY (β-D-glucuronide and D-glucuronate degradation)



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ORGANISMS CONTAINING AT LEAST 3 GENES FROM THE GROUP:

Total number of orgs: 182
Effective number of orgs (counting one per cluster within 468 clusters): 128

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM43
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317584
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329534
YPES386656 ncbi Yersinia pestis Pestoides F4
YPES377628 ncbi Yersinia pestis Nepal5164
YPES360102 ncbi Yersinia pestis Antiqua4
YPES349746 ncbi Yersinia pestis Angola4
YPES214092 ncbi Yersinia pestis CO924
YPES187410 ncbi Yersinia pestis KIM 104
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80814
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A3
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110183
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103313
XCAM487884 Xanthomonas campestris pv. paulliniae3
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-103
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80043
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339133
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3063
VVUL216895 ncbi Vibrio vulnificus CMCP64
VVUL196600 ncbi Vibrio vulnificus YJ0164
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106334
VEIS391735 ncbi Verminephrobacter eiseniae EF01-23
TTUR377629 ncbi Teredinibacter turnerae T79014
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB43
TSP28240 Thermotoga sp.4
TSP1755 Thermoanaerobacter sp.3
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332233
TPET390874 ncbi Thermotoga petrophila RKU-14
TMAR243274 ncbi Thermotoga maritima MSB84
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT24
SSP644076 Silicibacter sp. TrichCH4B4
SSP292414 ncbi Ruegeria sp. TM10404
SSON300269 ncbi Shigella sonnei Ss0464
SPRO399741 ncbi Serratia proteamaculans 5684
SMEL266834 ncbi Sinorhizobium meliloti 10214
SMED366394 ncbi Sinorhizobium medicae WSM4194
SLAC55218 Ruegeria lacuscaerulensis3
SHIGELLA ncbi Shigella flexneri 2a str. 2457T4
SGLO343509 ncbi Sodalis glossinidius morsitans4
SFLE373384 ncbi Shigella flexneri 5 str. 84014
SFLE198214 ncbi Shigella flexneri 2a str. 3014
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23383
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4764
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B674
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91504
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT184
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty24
SDYS300267 ncbi Shigella dysenteriae Sd1973
SDEG203122 ncbi Saccharophagus degradans 2-404
SBOY300268 ncbi Shigella boydii Sb2274
SALA317655 ncbi Sphingopyxis alaskensis RB22563
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170254
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170294
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.14
RSP101510 ncbi Rhodococcus jostii RHA13
RSOL267608 ncbi Ralstonia solanacearum GMI10003
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332093
RPOM246200 ncbi Ruegeria pomeroyi DSS-34
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38414
REUT381666 ncbi Ralstonia eutropha H163
RETL347834 ncbi Rhizobium etli CFN 424
RDEN375451 ncbi Roseobacter denitrificans OCh 1144
RALB246199 Ruminococcus albus 84
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30003
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a3
PSTU379731 ncbi Pseudomonas stutzeri A15013
PSP296591 ncbi Polaromonas sp. JS6663
PSP117 Pirellula sp.3
PRUM264731 ncbi Prevotella ruminicola 234
PPRO298386 ncbi Photobacterium profundum SS94
PMEN399739 ncbi Pseudomonas mendocina ymp3
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO14
PING357804 ncbi Psychromonas ingrahamii 374
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1253
PFLU220664 ncbi Pseudomonas fluorescens Pf-53
PFLU216595 ncbi Pseudomonas fluorescens SBW253
PFLU205922 ncbi Pseudomonas fluorescens Pf0-13
PENT384676 ncbi Pseudomonas entomophila L483
PATL342610 ncbi Pseudoalteromonas atlantica T6c4
PAER208964 ncbi Pseudomonas aeruginosa PAO13
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA143
PACN267747 ncbi Propionibacterium acnes KPA1712024
OANT439375 ncbi Ochrobactrum anthropi ATCC 491884
MTHE264732 ncbi Moorella thermoacetica ATCC 390734
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E4
MSP400668 ncbi Marinomonas sp. MWYL14
MSP266779 ncbi Chelativorans sp. BNC14
MSP189918 ncbi Mycobacterium sp. KMS3
MSP164757 ncbi Mycobacterium sp. JLS3
MSP164756 ncbi Mycobacterium sp. MCS3
MSME246196 ncbi Mycobacterium smegmatis MC2 1553
MMAR394221 ncbi Maricaulis maris MCS103
MLOT266835 ncbi Mesorhizobium loti MAFF3030994
MAVI243243 ncbi Mycobacterium avium 1043
LPLA220668 ncbi Lactobacillus plantarum WCFS13
LLAC272623 ncbi Lactococcus lactis lactis Il14034
LLAC272622 ncbi Lactococcus lactis cremoris SK114
LCHO395495 ncbi Leptothrix cholodnii SP-63
LCAS321967 ncbi Lactobacillus casei ATCC 3343
LBRE387344 ncbi Lactobacillus brevis ATCC 3674
KRAD266940 ncbi Kineococcus radiotolerans SRS302163
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785784
JSP290400 ncbi Jannaschia sp. CCS13
HSOM228400 ncbi Haemophilus somnus 23363
HSOM205914 ncbi Haemophilus somnus 129PT3
HCHE349521 ncbi Hahella chejuensis KCTC 23963
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-24
GOXY290633 ncbi Gluconobacter oxydans 621H3
GKAU235909 ncbi Geobacillus kaustophilus HTA4263
GFOR411154 ncbi Gramella forsetii KT08033
FSP1855 Frankia sp. EAN1pec3
FJOH376686 ncbi Flavobacterium johnsoniae UW1014
ESP42895 Enterobacter sp.4
EFER585054 ncbi Escherichia fergusonii ATCC 354694
ECOO157 ncbi Escherichia coli O157:H7 EDL9334
ECOL83334 Escherichia coli O157:H74
ECOL585397 ncbi Escherichia coli ED1a4
ECOL585057 ncbi Escherichia coli IAI394
ECOL585056 ncbi Escherichia coli UMN0264
ECOL585055 ncbi Escherichia coli 559894
ECOL585035 ncbi Escherichia coli S884
ECOL585034 ncbi Escherichia coli IAI14
ECOL481805 ncbi Escherichia coli ATCC 87394
ECOL469008 ncbi Escherichia coli BL21(DE3)4
ECOL439855 ncbi Escherichia coli SMS-3-54
ECOL413997 ncbi Escherichia coli B str. REL6064
ECOL409438 ncbi Escherichia coli SE114
ECOL405955 ncbi Escherichia coli APEC O14
ECOL364106 ncbi Escherichia coli UTI894
ECOL362663 ncbi Escherichia coli 5364
ECOL331111 ncbi Escherichia coli E24377A4
ECOL316407 ncbi Escherichia coli K-12 substr. W31104
ECOL199310 ncbi Escherichia coli CFT0734
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10434
DSHI398580 ncbi Dinoroseobacter shibae DFL 123
DGEO319795 ncbi Deinococcus geothermalis DSM 113003
CSP78 Caulobacter sp.3
CSP501479 Citreicella sp. SE454
CSAL290398 ncbi Chromohalobacter salexigens DSM 30434
CPHY357809 ncbi Clostridium phytofermentans ISDg4
CJAP155077 Cellvibrio japonicus4
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130323
CEFF196164 ncbi Corynebacterium efficiens YS-3143
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80524
CAULO ncbi Caulobacter crescentus CB153
CACE272562 ncbi Clostridium acetobutylicum ATCC 8244
BVIE269482 ncbi Burkholderia vietnamiensis G43
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54824
BTHA271848 ncbi Burkholderia thailandensis E2643
BSUB ncbi Bacillus subtilis subtilis 1684
BSP36773 Burkholderia sp.4
BPUM315750 ncbi Bacillus pumilus SAFR-0323
BPSE320373 ncbi Burkholderia pseudomallei 6683
BPSE320372 ncbi Burkholderia pseudomallei 1710b3
BPSE272560 ncbi Burkholderia pseudomallei K962433
BPET94624 Bordetella petrii3
BOVI236 Brucella ovis4
BMEL359391 ncbi Brucella melitensis biovar Abortus 23084
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M4
BMAL320389 ncbi Burkholderia mallei NCTC 102473
BMAL320388 ncbi Burkholderia mallei SAVP13
BMAL243160 ncbi Burkholderia mallei ATCC 233443
BLIC279010 ncbi Bacillus licheniformis ATCC 145804
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1104
BHAL272558 ncbi Bacillus halodurans C-1254
BCLA66692 ncbi Bacillus clausii KSM-K164
BCEN331272 ncbi Burkholderia cenocepacia HI24244
BCEN331271 ncbi Burkholderia cenocepacia AU 10544
BCAN483179 ncbi Brucella canis ATCC 233654
BAMY326423 ncbi Bacillus amyloliquefaciens FZB424
BAMB398577 ncbi Burkholderia ambifaria MC40-63
BAMB339670 ncbi Burkholderia ambifaria AMMD3
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9414
ASP1667 Arthrobacter sp.3
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4493
ANAE240017 Actinomyces oris MG13
AMET293826 ncbi Alkaliphilus metalliredigens QYMF4
AHYD196024 Aeromonas hydrophila dhakensis3
ACRY349163 ncbi Acidiphilium cryptum JF-54
ACEL351607 ncbi Acidothermus cellulolyticus 11B3
ACAU438753 ncbi Azorhizobium caulinodans ORS 5714
AAUR290340 ncbi Arthrobacter aurescens TC13


Names of the homologs of the genes in the group in each of these orgs
  G6816   EG20248   EG12036   EG11066   
ZMOB264203 ZMO1449ZMO1449ZMO1449
YPSE349747 YPSIP31758_2702YPSIP31758_2702YPSIP31758_2702YPSIP31758_2699
YPSE273123 YPTB1314YPTB1314YPTB1314YPTB1315
YPES386656 YPDSF_2414YPDSF_2414YPDSF_2414YPDSF_2413
YPES377628 YPN_2696YPN_2696YPN_2696YPN_2695
YPES360102 YPA_0998YPA_0998YPA_0998YPA_0999
YPES349746 YPANGOLA_A1507YPANGOLA_A1507YPANGOLA_A1507YPANGOLA_A1509
YPES214092 YPO1280YPO1280YPO1280YPO1283
YPES187410 Y2903Y2903Y2903Y2902
YENT393305 YE1438YE1438YE1438YE1440
XORY360094 XOOORF_0363XOOORF_0363XOOORF_0363
XORY342109 XOO4167XOO4167XOO4167
XORY291331 XOO4424XOO4424XOO4424
XCAM487884 XCC-B100_4312XCC-B100_4312XCC-B100_4312
XCAM316273 XCAORF_4428XCAORF_4428XCAORF_4428
XCAM314565 XC_4198XC_4198XC_4198
XCAM190485 XCC4107XCC4107XCC4107
XAXO190486 XAC4232XAC4232XAC4232
VVUL216895 VV2_1069VV2_1069VV2_1069VV2_1064
VVUL196600 VVA1593VVA1593VVA1593VVA1588
VPAR223926 VPA1705VPA1705VPA1705VPA1700
VEIS391735 VEIS_3560VEIS_3560VEIS_3560
TTUR377629 TERTU_0899TERTU_0899TERTU_0899TERTU_0111
TTEN273068 TTE0342TTE1940TTE1940
TSP28240 TRQ2_0879TRQ2_0879TRQ2_0879TRQ2_0878
TSP1755 TETH514_0271TETH514_0271TETH514_0271
TPSE340099 TETH39_1939TETH39_1939TETH39_1939
TPET390874 TPET_0856TPET_0856TPET_0856TPET_0855
TMAR243274 TM_0068TM_0068TM_0068TM_0069
STYP99287 STM1508STM1508STM1508STM3135
SSP644076 SCH4B_1269SCH4B_1269SCH4B_1269SCH4B_0022
SSP292414 TM1040_3866TM1040_3866TM1040_3866TM1040_3873
SSON300269 SSO_2228SSO_2228SSO_2228SSO_4477
SPRO399741 SPRO_3239SPRO_3239SPRO_3239SPRO_3238
SMEL266834 SMB20749SMB20749SMB20749SMB20446
SMED366394 SMED_4245SMED_4245SMED_4245SMED_3684
SLAC55218 SL1157_A0216SL1157_A0216SL1157_A0216
SHIGELLA YEIQYEIQYEIQUXUA
SGLO343509 SG1837SG1837SG1837SG1838
SFLE373384 SFV_4203SFV_4203SFV_4203SFV_4204
SFLE198214 AAN45618.1AAN45618.1AAN45618.1AAN45619.1
SERY405948 SACE_4940SACE_4940SACE_4940
SENT454169 SEHA_C3382SEHA_C3382SEHA_C3382SEHA_C3381
SENT321314 SCH_3077SCH_3077SCH_3077SCH_3076
SENT295319 SPA3004SPA3004SPA3004SPA3003
SENT220341 STY1553STY1553STY1553STY3306
SENT209261 T3057T3057T3057T3056
SDYS300267 SDY_0907SDY_0907SDY_0907
SDEG203122 SDE_0941SDE_0941SDE_0941SDE_1891
SBOY300268 SBO_4374SBO_4374SBO_4374SBO_4373
SALA317655 SALA_3047SALA_3047SALA_3047
RSPH349102 RSPH17025_2405RSPH17025_2405RSPH17025_2405RSPH17025_0406
RSPH349101 RSPH17029_2132RSPH17029_2132RSPH17029_2132RSPH17029_2429
RSPH272943 RSP_0480RSP_0480RSP_0480RSP_0773
RSP101510 RHA1_RO02810RHA1_RO02810RHA1_RO02810
RSOL267608 RSC2129RSC2129RSC2129
RSAL288705 RSAL33209_3419RSAL33209_3419RSAL33209_3419
RPOM246200 SPO_1724SPO_1724SPO_1724SPO_1723
RLEG216596 RL0098RL0098RL0098PRL90057
REUT381666 H16_A1937H16_A1937H16_A1937
RETL347834 RHE_CH00089RHE_CH00089RHE_CH00089RHE_PB00006
RDEN375451 RD1_2933RD1_2933RD1_2933RD1_0665
RALB246199 GRAORF_3304GRAORF_0353GRAORF_3304GRAORF_3302
PSYR223283 PSPTO_2703PSPTO_2703PSPTO_2703
PSYR205918 PSYR_2436PSYR_2436PSYR_2436
PSTU379731 PST_2194PST_2194PST_2194
PSP296591 BPRO_3970BPRO_3970BPRO_3970
PSP117 RB2403RB2403RB2403
PRUM264731 GFRORF0735GFRORF0735GFRORF0735GFRORF0736
PPRO298386 PBPRB1880PBPRB1880PBPRB1880PBPRB1874
PMEN399739 PMEN_4472PMEN_4472PMEN_4472
PLUM243265 PLU0175PLU0175PLU0175PLU0170
PING357804 PING_0132PING_0132PING_0132PING_0136
PHAL326442 PSHAB0208PSHAB0208PSHAB0208
PFLU220664 PFL_3074PFL_3074PFL_3074
PFLU216595 PFLU2741PFLU2741PFLU2741
PFLU205922 PFL_2636PFL_2636PFL_2636
PENT384676 PSEEN1989PSEEN1989PSEEN1989
PATL342610 PATL_0779PATL_0779PATL_0779PATL_3648
PAER208964 PA2342PA2342PA2342
PAER208963 PA14_34360PA14_34360PA14_34360
PACN267747 PPA2328PPA2328PPA2328PPA2327
OANT439375 OANT_4096OANT_4096OANT_3848OANT_4095
MTHE264732 MOTH_0429MOTH_0429MOTH_0429MOTH_0430
MSUC221988 MS0529MS0529MS0529MS0537
MSP400668 MMWYL1_2779MMWYL1_2779MMWYL1_2779MMWYL1_2778
MSP266779 MESO_4497MESO_4497MESO_4497MESO_4498
MSP189918 MKMS_4445MKMS_4445MKMS_4445
MSP164757 MJLS_4739MJLS_4739MJLS_4739
MSP164756 MMCS_4359MMCS_4359MMCS_4359
MSME246196 MSMEG_2907MSMEG_5576MSMEG_2907
MMAR394221 MMAR10_0223MMAR10_0223MMAR10_0223
MLOT266835 MLR1886MLR1886MLL4920MLR6866
MAVI243243 MAV_1054MAV_1052MAV_4838
LPLA220668 LP_0233LP_0233LP_0233
LLAC272623 L0241L0241L0241L0020
LLAC272622 LACR_1746LACR_1746LACR_1746LACR_1745
LCHO395495 LCHO_0894LCHO_0894LCHO_0134
LCAS321967 LSEI_2885LSEI_2885LSEI_2885
LBRE387344 LVIS_0139LVIS_0139LVIS_0139LVIS_0146
KRAD266940 KRAD_0583KRAD_0300KRAD_0583
KPNE272620 GKPORF_B1895GKPORF_B1895GKPORF_B1895GKPORF_B1894
JSP290400 JANN_2907JANN_2907JANN_2907
HSOM228400 HSM_0826HSM_0826HSM_0415
HSOM205914 HS_1251HS_1251HS_1596
HCHE349521 HCH_01298HCH_01298HCH_01298
GTHE420246 GTNG_1844GTNG_1844GTNG_1844GTNG_1764
GOXY290633 GOX1432GOX1432GOX1432
GKAU235909 GK1945GK1945GK1945
GFOR411154 GFO_1705GFO_1705GFO_1705
FSP1855 FRANEAN1_3198FRANEAN1_3198FRANEAN1_3198
FJOH376686 FJOH_4259FJOH_4259FJOH_4259FJOH_4191
ESP42895 ENT638_1935ENT638_1935ENT638_1935ENT638_2767
EFER585054 EFER_3029EFER_3029EFER_3029EFER_3030
ECOO157 UXUBUXUBUXUBUXUA
ECOL83334 ECS2151ECS2151ECS2151ECS5281
ECOL585397 ECED1_2622ECED1_2622ECED1_2622ECED1_5204
ECOL585057 ECIAI39_4796ECIAI39_4796ECIAI39_4796ECIAI39_4795
ECOL585056 ECUMN_2509ECUMN_2509ECUMN_2509ECUMN_4930
ECOL585055 EC55989_4988EC55989_4988EC55989_4988EC55989_4987
ECOL585035 ECS88_4941ECS88_4941ECS88_4941ECS88_4940
ECOL585034 ECIAI1_4539ECIAI1_4539ECIAI1_4539ECIAI1_4538
ECOL481805 ECOLC_2116ECOLC_3741ECOLC_2116ECOLC_3742
ECOL469008 ECBD_2097ECBD_2097ECBD_2097ECBD_3713
ECOL439855 ECSMS35_1623ECSMS35_1623ECSMS35_1623ECSMS35_4849
ECOL413997 ECB_04192ECB_04192ECB_04192ECB_04191
ECOL409438 ECSE_4596ECSE_4596ECSE_4596ECSE_4595
ECOL405955 APECO1_4382APECO1_4382APECO1_4382APECO1_2109
ECOL364106 UTI89_C5019UTI89_C5019UTI89_C5019UTI89_C5018
ECOL362663 ECP_4659ECP_4659ECP_4659ECP_4658
ECOL331111 ECE24377A_1751ECE24377A_1751ECE24377A_1751ECE24377A_4920
ECOL316407 ECK4314:JW4286:B4323ECK4314:JW4286:B4323ECK4314:JW4286:B4323ECK4313:JW4285:B4322
ECOL199310 C5403C5403C5403C5402
ECAR218491 ECA0920ECA0920ECA0920ECA1093
DSHI398580 DSHI_0969DSHI_0969DSHI_0969
DGEO319795 DGEO_2866DGEO_2866DGEO_2866
CSP78 CAUL_1753CAUL_1753CAUL_1753
CSP501479 CSE45_4888CSE45_4888CSE45_4888CSE45_4889
CSAL290398 CSAL_2979CSAL_2979CSAL_2979CSAL_2980
CPHY357809 CPHY_1062CPHY_1062CPHY_1062CPHY_1061
CJAP155077 CJA_0180CJA_0180CJA_0180CJA_1109
CGLU196627 CG0143CG0143CG0143
CEFF196164 CE2378CE2378CE2378
CBEI290402 CBEI_1833CBEI_1838CBEI_1838CBEI_2200
CAULO CC1487CC1487CC1487
CACE272562 CAC0695CAC0695CAC0695CAC1332
BVIE269482 BCEP1808_2702BCEP1808_2702BCEP1808_2702
BTHE226186 BT_0825BT_0825BT_0825BT_1432
BTHA271848 BTH_I0703BTH_I0703BTH_I0703
BSUB BSU12380BSU12380BSU12380BSU12340
BSP36773 BCEP18194_A5916BCEP18194_A5916BCEP18194_A5916BCEP18194_B1358
BPUM315750 BPUM_2985BPUM_2985BPUM_2985
BPSE320373 BURPS668_A2094BURPS668_A2094BURPS668_A2094
BPSE320372 BURPS1710B_B0609BURPS1710B_B0609BURPS1710B_B0609
BPSE272560 BPSS1476BPSS1476BPSS1476
BPET94624 BPET3940BPET3940BPET3940
BOVI236 GBOORFA0836GBOORFA0836GBOORFA0836GBOORFA0840
BMEL359391 BAB2_0426BAB2_0426BAB2_0426BAB2_0422
BMEL224914 BMEII0478BMEII0478BMEII0478BMEII0474
BMAL320389 BMA10247_A1646BMA10247_A1646BMA10247_A1646
BMAL320388 BMASAVP1_0581BMASAVP1_0581BMASAVP1_0581
BMAL243160 BMA_A0768BMA_A0768BMA_A0768
BLIC279010 BL00711BL00711BL00711BL03802
BJAP224911 BLR6836BLR6836BLR6836BLL6830
BHAL272558 BH0492BH0492BH0492BH1063
BCLA66692 ABC0443ABC1154ABC0443ABC0631
BCEN331272 BCEN2424_4641BCEN2424_4641BCEN2424_4641BCEN2424_4493
BCEN331271 BCEN_3727BCEN_3727BCEN_3727BCEN_3876
BCAN483179 BCAN_B0825BCAN_B0825BCAN_B0825BCAN_B0829
BAMY326423 RBAM_012410RBAM_012410RBAM_012410RBAM_017980
BAMB398577 BAMMC406_5134BAMMC406_5134BAMMC406_5134
BAMB339670 BAMB_4601BAMB_4601BAMB_4601
BABO262698 BRUAB2_0421BRUAB2_0421BRUAB2_0421BRUAB2_0418
ASP1667 ARTH_0503ARTH_0503ARTH_0503
ASAL382245 ASA_3756ASA_3756ASA_3756
ANAE240017 ANA_2774ANA_2774ANA_2774
AMET293826 AMET_1293AMET_0555AMET_0555AMET_3784
AHYD196024 AHA_0550AHA_0550AHA_0550
ACRY349163 ACRY_1859ACRY_1859ACRY_1859ACRY_1858
ACEL351607 ACEL_0905ACEL_0905ACEL_0905
ACAU438753 AZC_3347AZC_3347AZC_3347AZC_2768
AAUR290340 AAUR_0528AAUR_0528AAUR_0528


Organism features enriched in list (features available for 163 out of the 182 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00093971492
Disease:Bubonic_plague 0.000446666
Disease:Dysentery 0.000446666
Disease:Gastroenteritis 0.00026761013
Endospores:No 0.000038639211
GC_Content_Range4:0-40 6.320e-2312213
GC_Content_Range4:40-60 4.818e-686224
GC_Content_Range4:60-100 2.079e-765145
GC_Content_Range7:0-30 1.922e-6147
GC_Content_Range7:30-40 3.008e-1511166
GC_Content_Range7:50-60 2.130e-650107
GC_Content_Range7:60-70 3.476e-863134
Genome_Size_Range5:0-2 1.438e-232155
Genome_Size_Range5:2-4 0.000027135197
Genome_Size_Range5:4-6 2.271e-1795184
Genome_Size_Range5:6-10 1.312e-83147
Genome_Size_Range9:1-2 2.018e-182128
Genome_Size_Range9:2-3 1.406e-614120
Genome_Size_Range9:4-5 8.364e-84996
Genome_Size_Range9:5-6 9.242e-84688
Genome_Size_Range9:6-8 1.141e-82738
Gram_Stain:Gram_Neg 6.476e-8121333
Habitat:Multiple 0.004139962178
Habitat:Specialized 0.0004712553
Motility:No 1.727e-621151
Motility:Yes 0.000014497267
Optimal_temp.:25-30 0.00019211319
Oxygen_Req:Anaerobic 0.000039913102
Oxygen_Req:Facultative 0.000417573201
Pathogenic_in:Plant 0.0067488915
Shape:Coccus 0.0000502982
Shape:Rod 7.381e-20143347
Temp._range:Mesophilic 0.0062939142473



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 434
Effective number of orgs (counting one per cluster within 468 clusters): 335

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
XFAS405440 ncbi Xylella fastidiosa M120
XFAS183190 ncbi Xylella fastidiosa Temecula10
XFAS160492 ncbi Xylella fastidiosa 9a5c0
WSUC273121 ncbi Wolinella succinogenes DSM 17400
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
VFIS312309 ncbi Vibrio fischeri ES1140
VCHO345073 ncbi Vibrio cholerae O3951
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169611
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS11
TTHE300852 ncbi Thermus thermophilus HB80
TTHE262724 ncbi Thermus thermophilus HB270
TROS309801 ncbi Thermomicrobium roseum DSM 51591
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TLET416591 ncbi Thermotoga lettingae TMO0
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TFUS269800 ncbi Thermobifida fusca YX0
TERY203124 ncbi Trichodesmium erythraeum IMS1010
TELO197221 ncbi Thermosynechococcus elongatus BP-10
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12510
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252590
TDEN243275 ncbi Treponema denticola ATCC 354050
TCRU317025 ncbi Thiomicrospira crunogena XCL-20
TACI273075 ncbi Thermoplasma acidophilum DSM 17281
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen0
STRO369723 ncbi Salinispora tropica CNB-4400
STOK273063 ncbi Sulfolobus tokodaii 70
STHE322159 ncbi Streptococcus thermophilus LMD-90
STHE299768 ncbi Streptococcus thermophilus CNRZ10660
STHE292459 ncbi Symbiobacterium thermophilum IAM 148630
STHE264199 ncbi Streptococcus thermophilus LMG 183110
SSUI391296 ncbi Streptococcus suis 98HAH331
SSUI391295 ncbi Streptococcus suis 05ZYH331
SSP94122 ncbi Shewanella sp. ANA-30
SSP84588 ncbi Synechococcus sp. WH 81020
SSP64471 ncbi Synechococcus sp. CC93110
SSP387093 ncbi Sulfurovum sp. NBC37-10
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)0
SSP321327 ncbi Synechococcus sp. JA-3-3Ab0
SSP1148 ncbi Synechocystis sp. PCC 68030
SSP1131 Synechococcus sp. CC96050
SSOL273057 ncbi Sulfolobus solfataricus P20
SSED425104 ncbi Shewanella sediminis HAW-EB30
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153051
SRUB309807 ncbi Salinibacter ruber DSM 138550
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370552 ncbi Streptococcus pyogenes MGAS102701
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103940
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SPNE488221 ncbi Streptococcus pneumoniae 705851
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-60
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-140
SPNE171101 ncbi Streptococcus pneumoniae R60
SPNE170187 ncbi Streptococcus pneumoniae G540
SPNE1313 Streptococcus pneumoniae0
SPEA398579 ncbi Shewanella pealeana ATCC 7003450
SONE211586 ncbi Shewanella oneidensis MR-10
SMUT210007 ncbi Streptococcus mutans UA1591
SMAR399550 ncbi Staphylothermus marinus F10
SLOI323850 ncbi Shewanella loihica PV-40
SHAL458817 ncbi Shewanella halifaxensis HAW-EB40
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14351
SGOR29390 Streptococcus gordonii Challis0
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB0
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122280
SEPI176279 ncbi Staphylococcus epidermidis RP62A0
SELO269084 ncbi Synechococcus elongatus PCC 63010
SDEN318161 ncbi Shewanella denitrificans OS2170
SCO ncbi Streptomyces coelicolor A3(2)0
SBAL402882 ncbi Shewanella baltica OS1850
SBAL399599 ncbi Shewanella baltica OS1950
SAVE227882 ncbi Streptomyces avermitilis MA-46800
SAUR93062 ncbi Staphylococcus aureus aureus COL0
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83250
SAUR426430 ncbi Staphylococcus aureus aureus Newman0
SAUR418127 ncbi Staphylococcus aureus aureus Mu30
SAUR367830 Staphylococcus aureus aureus USA3000
SAUR359787 ncbi Staphylococcus aureus aureus JH10
SAUR359786 ncbi Staphylococcus aureus aureus JH90
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4760
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2520
SAUR273036 ncbi Staphylococcus aureus RF1220
SAUR196620 ncbi Staphylococcus aureus aureus MW20
SAUR158879 ncbi Staphylococcus aureus aureus N3150
SAUR158878 ncbi Staphylococcus aureus aureus Mu500
SARE391037 ncbi Salinispora arenicola CNS-2050
SAGA211110 ncbi Streptococcus agalactiae NEM3161
SAGA208435 ncbi Streptococcus agalactiae 2603V/R1
SAGA205921 ncbi Streptococcus agalactiae A9091
SACI56780 ncbi Syntrophus aciditrophicus SB0
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99410
RTYP257363 ncbi Rickettsia typhi Wilmington0
RSP357808 ncbi Roseiflexus sp. RS-10
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111700
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RPAL316058 ncbi Rhodopseudomonas palustris HaA20
RPAL316057 ncbi Rhodopseudomonas palustris BisB50
RPAL316056 ncbi Rhodopseudomonas palustris BisB180
RPAL316055 ncbi Rhodopseudomonas palustris BisA530
RPAL258594 ncbi Rhodopseudomonas palustris CGA0090
RMET266264 ncbi Ralstonia metallidurans CH340
RMAS416276 ncbi Rickettsia massiliae MTU50
RFER338969 ncbi Rhodoferax ferrireducens T1181
RFEL315456 ncbi Rickettsia felis URRWXCal20
REUT264198 ncbi Ralstonia eutropha JMP1340
RCON272944 ncbi Rickettsia conorii Malish 70
RCAS383372 ncbi Roseiflexus castenholzii DSM 139410
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97901
PTHE370438 ncbi Pelotomaculum thermopropionicum SI0
PSP56811 Psychrobacter sp.0
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-10
PPUT76869 ncbi Pseudomonas putida GB-10
PPUT351746 ncbi Pseudomonas putida F10
PPUT160488 ncbi Pseudomonas putida KT24400
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257450
PMOB403833 ncbi Petrotoga mobilis SJ950
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74547 ncbi Prochlorococcus marinus MIT 93130
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR59920 ncbi Prochlorococcus marinus NATL2A0
PMAR167555 ncbi Prochlorococcus marinus NATL1A0
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13750
PMAR146891 ncbi Prochlorococcus marinus AS96010
PLUT319225 ncbi Chlorobium luteolum DSM 2730
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 170
PHOR70601 ncbi Pyrococcus horikoshii OT30
PGIN242619 ncbi Porphyromonas gingivalis W830
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PDIS435591 ncbi Parabacteroides distasonis ATCC 85031
PCRY335284 ncbi Psychrobacter cryohalolentis K50
PCAR338963 ncbi Pelobacter carbinolicus DSM 23800
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PARC259536 ncbi Psychrobacter arcticus 273-40
PAER178306 ncbi Pyrobaculum aerophilum IM20
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
OCAR504832 ncbi Oligotropha carboxidovorans OM50
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2550
NSP387092 ncbi Nitratiruptor sp. SB155-20
NSP35761 Nocardioides sp.0
NSP103690 ncbi Nostoc sp. PCC 71200
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
NOCE323261 ncbi Nitrosococcus oceani ATCC 197070
NMUL323848 ncbi Nitrosospira multiformis ATCC 251960
NMEN374833 ncbi Neisseria meningitidis 0534420
NMEN272831 ncbi Neisseria meningitidis FAM180
NMEN122587 ncbi Neisseria meningitidis Z24910
NMEN122586 ncbi Neisseria meningitidis MC580
NHAM323097 ncbi Nitrobacter hamburgensis X140
NGON242231 ncbi Neisseria gonorrhoeae FA 10900
NFAR247156 ncbi Nocardia farcinica IFM 101520
NEUT335283 ncbi Nitrosomonas eutropha C910
NEUR228410 ncbi Nitrosomonas europaea ATCC 197180
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124440
MXAN246197 ncbi Myxococcus xanthus DK 16220
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-10
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra0
MTUB336982 ncbi Mycobacterium tuberculosis F110
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MTBRV ncbi Mycobacterium tuberculosis H37Rv0
MTBCDC ncbi Mycobacterium tuberculosis CDC15510
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSP409 Methylobacterium sp.0
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPET420662 ncbi Methylibium petroleiphilum PM10
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MMAG342108 ncbi Magnetospirillum magneticum AMB-10
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK0
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MFLA265072 ncbi Methylobacillus flagellatus KT0
MEXT419610 ncbi Methylobacterium extorquens PA10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MCAP243233 ncbi Methylococcus capsulatus Bath0
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P20
MBOV233413 ncbi Mycobacterium bovis AF2122/970
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAQU351348 ncbi Marinobacter aquaeolei VT80
MAER449447 ncbi Microcystis aeruginosa NIES-8430
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
MABS561007 ncbi Mycobacterium abscessus ATCC 199770
LXYL281090 ncbi Leifsonia xyli xyli CTCB070
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53340
LSPH444177 ncbi Lysinibacillus sphaericus C3-410
LSAK314315 ncbi Lactobacillus sakei sakei 23K0
LREU557436 ncbi Lactobacillus reuteri DSM 200160
LPNE400673 ncbi Legionella pneumophila Corby0
LPNE297246 ncbi Legionella pneumophila Paris0
LPNE297245 ncbi Legionella pneumophila Lens0
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 10
LMON265669 ncbi Listeria monocytogenes 4b F23650
LMON169963 ncbi Listeria monocytogenes EGD-e0
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82930
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-000
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1300
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566010
LINN272626 ncbi Listeria innocua Clip112620
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1970
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5500
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)0
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)0
LACI272621 ncbi Lactobacillus acidophilus NCFM0
JSP375286 ncbi Janthinobacterium sp. Marseille0
ILOI283942 ncbi Idiomarina loihiensis L2TR0
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSAL478009 ncbi Halobacterium salinarum R10
HPYL85963 ncbi Helicobacter pylori J990
HPYL357544 ncbi Helicobacter pylori HPAG10
HPY ncbi Helicobacter pylori 266950
HNEP81032 Hyphomonas neptunium0
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMOD498761 ncbi Heliobacterium modesticaldum Ice10
HMAR272569 ncbi Haloarcula marismortui ATCC 430490
HINF71421 ncbi Haemophilus influenzae Rd KW201
HINF374930 ncbi Haemophilus influenzae PittEE1
HINF281310 ncbi Haemophilus influenzae 86-028NP1
HHEP235279 ncbi Helicobacter hepaticus ATCC 514490
HHAL349124 ncbi Halorhodospira halophila SL10
HDUC233412 ncbi Haemophilus ducreyi 35000HP0
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237790
HARS204773 ncbi Herminiimonas arsenicoxydans0
HACI382638 ncbi Helicobacter acinonychis Sheeba0
GVIO251221 ncbi Gloeobacter violaceus PCC 74210
GURA351605 ncbi Geobacter uraniireducens Rf40
GSUL243231 ncbi Geobacter sulfurreducens PCA0
GMET269799 ncbi Geobacter metallireducens GS-150
GBET391165 ncbi Granulibacter bethesdensis CGDNIH10
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-000
FTUL418136 ncbi Francisella tularensis tularensis WY96-34180
FTUL401614 ncbi Francisella novicida U1120
FTUL393115 ncbi Francisella tularensis tularensis FSC1980
FTUL393011 ncbi Francisella tularensis holarctica OSU180
FTUL351581 Francisella tularensis holarctica FSC2000
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S850
FSP106370 ncbi Frankia sp. CcI30
FRANT ncbi Francisella tularensis tularensis SCHU S40
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250170
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255860
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B10
FMAG334413 ncbi Finegoldia magna ATCC 293280
FALN326424 ncbi Frankia alni ACN14a0
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ELIT314225 ncbi Erythrobacter litoralis HTCC25940
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough0
DSP255470 ncbi Dehalococcoides sp. CBDB10
DSP216389 ncbi Dehalococcoides sp. BAV10
DRED349161 ncbi Desulfotomaculum reducens MI-10
DRAD243230 ncbi Deinococcus radiodurans R10
DPSY177439 ncbi Desulfotalea psychrophila LSv540
DOLE96561 ncbi Desulfococcus oleovorans Hxd30
DNOD246195 ncbi Dichelobacter nodosus VCS1703A0
DHAF138119 ncbi Desulfitobacterium hafniense Y510
DETH243164 ncbi Dehalococcoides ethenogenes 1950
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G200
DARO159087 ncbi Dechloromonas aromatica RCB0
CVIO243365 ncbi Chromobacterium violaceum ATCC 124720
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA0
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTET212717 ncbi Clostridium tetani E880
CTEP194439 ncbi Chlorobium tepidum TLS0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)0
CPSY167879 ncbi Colwellia psychrerythraea 34H0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE250
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPER289380 ncbi Clostridium perfringens SM1010
CPER195103 ncbi Clostridium perfringens ATCC 131240
CPER195102 ncbi Clostridium perfringens 131
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10620
CNOV386415 ncbi Clostridium novyi NT0
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3820
CMIC31964 ncbi Clavibacter michiganensis sepedonicus0
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1671
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CKLU431943 ncbi Clostridium kluyveri DSM 5550
CJEJ407148 ncbi Campylobacter jejuni jejuni 811160
CJEJ360109 ncbi Campylobacter jejuni doylei 269.970
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1760
CJEJ195099 ncbi Campylobacter jejuni RM12210
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111680
CJEI306537 ncbi Corynebacterium jeikeium K4110
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29010
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334060
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3810
CFET360106 ncbi Campylobacter fetus fetus 82-400
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131290
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C0
CCUR360105 ncbi Campylobacter curvus 525.920
CCON360104 ncbi Campylobacter concisus 138260
CCHL340177 ncbi Chlorobium chlorochromatii CaD30
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1110
CBUR360115 ncbi Coxiella burnetii RSA 3310
CBUR227377 ncbi Coxiella burnetii RSA 4930
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto0
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6570
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B0
CBOT498213 ncbi Clostridium botulinum B1 str. Okra0
CBOT441772 ncbi Clostridium botulinum F str. Langeland0
CBOT441771 ncbi Clostridium botulinum A str. Hall0
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193970
CBOT36826 Clostridium botulinum A0
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN0
CBLO203907 ncbi Candidatus Blochmannia floridanus0
CABO218497 ncbi Chlamydophila abortus S26/30
BXEN266265 ncbi Burkholderia xenovorans LB4000
BWEI315730 ncbi Bacillus weihenstephanensis KBAB40
BTUR314724 ncbi Borrelia turicatae 91E1350
BTRI382640 ncbi Bartonella tribocorum CIP 1054760
BTHU412694 ncbi Bacillus thuringiensis Al Hakam0
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-270
BSUI470137 ncbi Brucella suis ATCC 234451
BSUI204722 ncbi Brucella suis 13301
BSP376 Bradyrhizobium sp.1
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)0
BQUI283165 ncbi Bartonella quintana Toulouse0
BPER257313 ncbi Bordetella pertussis Tohama I0
BPAR257311 ncbi Bordetella parapertussis 128220
BLON206672 ncbi Bifidobacterium longum NCC27050
BHER314723 ncbi Borrelia hermsii DAH0
BHEN283166 ncbi Bartonella henselae Houston-10
BGAR290434 ncbi Borrelia garinii PBi0
BFRA295405 ncbi Bacteroides fragilis YCH461
BFRA272559 ncbi Bacteroides fragilis NCTC 93431
BCIC186490 Candidatus Baumannia cicadellinicola0
BCER572264 ncbi Bacillus cereus 03BB1020
BCER405917 Bacillus cereus W0
BCER315749 ncbi Bacillus cytotoxicus NVH 391-980
BCER288681 ncbi Bacillus cereus E33L0
BCER226900 ncbi Bacillus cereus ATCC 145790
BBUR224326 ncbi Borrelia burgdorferi B310
BBRO257310 ncbi Bordetella bronchiseptica RB500
BBAC360095 ncbi Bartonella bacilliformis KC5830
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1000
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)0
BANT592021 ncbi Bacillus anthracis A02480
BANT568206 ncbi Bacillus anthracis CDC 6840
BANT261594 ncbi Bacillus anthracis Ames Ancestor0
BANT260799 ncbi Bacillus anthracis Sterne0
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AVAR240292 ncbi Anabaena variabilis ATCC 294130
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP76114 ncbi Aromatoleum aromaticum EbN10
ASP62977 ncbi Acinetobacter sp. ADP10
ASP62928 ncbi Azoarcus sp. BH720
ASP232721 ncbi Acidovorax sp. JS420
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL030
APLE416269 ncbi Actinobacillus pleuropneumoniae L201
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K10
AORE350688 ncbi Alkaliphilus oremlandii OhILAs0
AMAR329726 ncbi Acaryochloris marina MBIC110170
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232700
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-10
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C0
ABUT367737 ncbi Arcobacter butzleri RM40180
ABOR393595 ncbi Alcanivorax borkumensis SK20
ABAU360910 ncbi Bordetella avium 197N0
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3450
AAVE397945 ncbi Acidovorax citrulli AAC00-10
AAEO224324 ncbi Aquifex aeolicus VF50


Names of the homologs of the genes in the group in each of these orgs
  G6816   EG20248   EG12036   EG11066   
XFAS405440
XFAS183190
XFAS160492
WSUC273121
WPIP955
WPIP80849
VFIS312309
VCHO345073 VC0395_0195
VCHO VCA1046
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496
TWHI203267
TVOL273116 TVN0074
TTHE300852
TTHE262724
TROS309801 TRD_0912
TPEN368408
TPAL243276
TLET416591
TKOD69014
TFUS269800
TERY203124
TELO197221
TDEN326298
TDEN292415
TDEN243275
TCRU317025
TACI273075 TA0753
SWOL335541
STRO369723
STOK273063
STHE322159
STHE299768
STHE292459
STHE264199
SSUI391296 SSU98_1173
SSUI391295 SSU05_1157
SSP94122
SSP84588
SSP64471
SSP387093
SSP321332
SSP321327
SSP1148
SSP1131
SSOL273057
SSED425104
SSAP342451 SSP0725
SRUB309807
SPYO370554
SPYO370553
SPYO370552 MGAS10270_SPY1170
SPYO370551
SPYO319701
SPYO293653
SPYO286636
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SPNE488221 SP70585_2237
SPNE487214
SPNE487213
SPNE171101
SPNE170187
SPNE1313
SPEA398579
SONE211586
SMUT210007 SMU_1182
SMAR399550
SLOI323850
SHAL458817
SHAE279808 SH2647
SGOR29390
SFUM335543
SEPI176280
SEPI176279
SELO269084
SDEN318161
SCO
SBAL402882
SBAL399599
SAVE227882
SAUR93062
SAUR93061
SAUR426430
SAUR418127
SAUR367830
SAUR359787
SAUR359786
SAUR282459
SAUR282458
SAUR273036
SAUR196620
SAUR158879
SAUR158878
SARE391037
SAGA211110 GBS0675
SAGA208435 SAG_0702
SAGA205921 SAK_0828
SACI56780
SACI330779
RXYL266117
RTYP257363
RSP357808
RRUB269796
RRIC452659
RRIC392021
RPRO272947
RPAL316058
RPAL316057
RPAL316056
RPAL316055
RPAL258594
RMET266264
RMAS416276
RFER338969 RFER_0947
RFEL315456
REUT264198
RCON272944
RCAS383372
RCAN293613
RBEL391896
RBEL336407
RAKA293614
PTOR263820 PTO0148
PTHE370438
PSP56811
PSP312153
PPUT76869
PPUT351746
PPUT160488
PPEN278197
PMOB403833
PMAR93060
PMAR74547
PMAR74546
PMAR59920
PMAR167555
PMAR167546
PMAR167542
PMAR167540
PMAR167539
PMAR146891
PLUT319225
PISL384616
PINT246198
PHOR70601
PGIN242619
PFUR186497
PDIS435591 BDI_0376
PCRY335284
PCAR338963
PAST100379
PARS340102
PARC259536
PAER178306
PABY272844
OTSU357244
OCAR504832
NWIN323098
NSP387092
NSP35761
NSP103690
NSEN222891
NPHA348780
NOCE323261
NMUL323848
NMEN374833
NMEN272831
NMEN122587
NMEN122586
NHAM323097
NGON242231
NFAR247156
NEUT335283
NEUR228410
NARO279238
MXAN246197
MVAN350058
MTUB419947
MTUB336982
MTHE349307
MTHE187420
MTBRV
MTBCDC
MSYN262723
MSTA339860
MSP409
MSED399549
MPUL272635
MPNE272634
MPET420662
MPEN272633
MMYC272632
MMOB267748
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR368407
MMAR267377
MMAG342108
MLEP272631
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGIL350054
MGEN243273
MFLO265311
MFLA265072
MEXT419610
MCAP340047
MCAP243233
MBUR259564
MBOV410289
MBOV233413
MBAR269797
MART243272
MAQU351348
MAER449447
MAEO419665
MACE188937
MABS561007
LXYL281090
LWEL386043
LSPH444177
LSAK314315
LREU557436
LPNE400673
LPNE297246
LPNE297245
LPNE272624
LMON265669
LMON169963
LMES203120
LJOH257314
LINT363253
LINT267671
LINT189518
LINN272626
LHEL405566
LGAS324831
LDEL390333
LDEL321956
LBOR355277
LBOR355276
LBIF456481
LBIF355278
LACI272621
JSP375286
ILOI283942
IHOS453591
HWAL362976
HSP64091
HSAL478009
HPYL85963
HPYL357544
HPY
HNEP81032
HMUK485914
HMOD498761
HMAR272569
HINF71421 HI_0055
HINF374930 CGSHIEE_03030
HINF281310 NTHI0065
HHEP235279
HHAL349124
HDUC233412
HBUT415426
HAUR316274
HARS204773
HACI382638
GVIO251221
GURA351605
GSUL243231
GMET269799
GBET391165
FTUL458234
FTUL418136
FTUL401614
FTUL393115
FTUL393011
FTUL351581
FSUC59374
FSP106370
FRANT
FPHI484022
FNUC190304
FNOD381764
FMAG334413
FALN326424
ERUM302409
ERUM254945
ELIT314225
ECHA205920
ECAN269484
DVUL882
DSP255470
DSP216389
DRED349161
DRAD243230
DPSY177439
DOLE96561
DNOD246195
DHAF138119
DETH243164
DDES207559
DARO159087
CVIO243365
CVES412965
CTRA471473
CTRA471472
CTET212717
CTEP194439
CSUL444179
CRUT413404
CPSY167879
CPRO264201
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPER289380
CPER195103
CPER195102 CPE0151
CPEL335992
CNOV386415
CMUR243161
CMIC443906
CMIC31964
CMET456442
CMAQ397948 CMAQ_1160
CKOR374847
CKLU431943
CJEJ407148
CJEJ360109
CJEJ354242
CJEJ195099
CJEJ192222
CJEI306537
CHYD246194
CHUT269798
CHOM360107
CFET360106
CFEL264202
CDIP257309
CDES477974
CCUR360105
CCON360104
CCHL340177
CCAV227941
CBUR434922
CBUR360115
CBUR227377
CBOT536232
CBOT515621
CBOT508765
CBOT498213
CBOT441772
CBOT441771
CBOT441770
CBOT36826
CBLO291272
CBLO203907
CABO218497
BXEN266265
BWEI315730
BTUR314724
BTRI382640
BTHU412694
BTHU281309
BSUI470137 BSUIS_B0806
BSUI204722 BR_A0814
BSP376 BRADO1803
BSP107806
BQUI283165
BPER257313
BPAR257311
BLON206672
BHER314723
BHEN283166
BGAR290434
BFRA295405 BF0177
BFRA272559 BF0142
BCIC186490
BCER572264
BCER405917
BCER315749
BCER288681
BCER226900
BBUR224326
BBRO257310
BBAC360095
BBAC264462
BAPH372461
BAPH198804
BANT592021
BANT568206
BANT261594
BANT260799
BAFZ390236
AYEL322098
AVAR240292
AURANTIMONAS
ASP76114
ASP62977
ASP62928
ASP232721
APLE434271
APLE416269 APL_1629
APHA212042
APER272557
AORE350688
AMAR329726
AMAR234826
ALAI441768
AFUL224325
AFER243159
AEHR187272
ADEH290397
ABUT367737
ABOR393595
ABAU360910
ABAC204669
AAVE397945
AAEO224324


Organism features enriched in list (features available for 413 out of the 434 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00443057592
Disease:Gastroenteritis 0.0003919313
Endospores:No 6.000e-6172211
GC_Content_Range4:0-40 1.233e-21198213
GC_Content_Range4:40-60 0.0000103136224
GC_Content_Range4:60-100 2.061e-778145
GC_Content_Range7:0-30 9.343e-64547
GC_Content_Range7:30-40 1.069e-14153166
GC_Content_Range7:50-60 3.454e-656107
GC_Content_Range7:60-70 2.978e-869134
Genome_Size_Range5:0-2 6.376e-25153155
Genome_Size_Range5:2-4 0.0000551159197
Genome_Size_Range5:4-6 2.549e-1885184
Genome_Size_Range5:6-10 4.201e-81647
Genome_Size_Range9:0-1 0.00007012727
Genome_Size_Range9:1-2 1.769e-19126128
Genome_Size_Range9:2-3 1.193e-6105120
Genome_Size_Range9:4-5 3.756e-84596
Genome_Size_Range9:5-6 3.520e-84088
Genome_Size_Range9:6-8 3.252e-81138
Gram_Stain:Gram_Neg 9.405e-8208333
Habitat:Multiple 0.0017294112178
Habitat:Specialized 0.00024764853
Motility:No 1.003e-6129151
Motility:Yes 9.617e-6166267
Optimal_temp.:25-30 0.0003061619
Optimal_temp.:30-37 0.00180711818
Oxygen_Req:Anaerobic 0.000040288102
Oxygen_Req:Facultative 0.0001720124201
Pathogenic_in:Plant 0.0089868615
Shape:Coccus 0.00020297182
Shape:Irregular_coccus 0.00258291717
Shape:Rod 6.213e-20199347
Shape:Sphere 0.00126341919
Shape:Spiral 5.360e-63434
Temp._range:Mesophilic 0.0030038324473



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
XYLCAT-PWY (xylose degradation I)2171500.6416
GALACTCAT-PWY (D-galactonate degradation)104940.6022
GLUCUROCAT-PWY (β-D-glucuronide and D-glucuronate degradation)2081410.6005
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491500.5567
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491500.5567
GLUCONSUPER-PWY (D-gluconate degradation)2291400.5352
GALACTITOLCAT-PWY (galactitol degradation)73700.5342
PWY-6507 (5-dehydro-4-deoxy-D-glucuronate degradation)76680.4939
GALACTUROCAT-PWY (D-galacturonate degradation I)1721120.4876
PWY-1001 (cellulose biosynthesis)2161280.4813
GALACT-GLUCUROCAT-PWY (superpathway of hexuronide and hexuronate degradation)1501020.4803
PWY0-981 (taurine degradation IV)106820.4794
PWY-5148 (acyl-CoA hydrolysis)2271310.4744
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)1491000.4673
CHOLINE-BETAINE-ANA-PWY (choline degradation I)135920.4503
BETSYN-PWY (glycine betaine biosynthesis I (Gram-negative bacteria))138930.4478
RHAMCAT-PWY (rhamnose degradation)91710.4439
ARABCAT-PWY (L-arabinose degradation I)128880.4421
IDNCAT-PWY (L-idonate degradation)2461320.4342
PWY0-1182 (trehalose degradation II (trehalase))70590.4309
THREONINE-DEG2-PWY (threonine degradation II)2141200.4273
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951130.4265
GLYSYN-THR-PWY (glycine biosynthesis IV)2151200.4246
PWY0-1329 (succinate to cytochrome bo oxidase electron transfer)96700.4102
GLUAMCAT-PWY (N-acetylglucosamine degradation I)3561610.4066
PWY0-541 (cyclopropane fatty acid (CFA) biosynthesis)3001450.4052
PWY0-845 (superpathway of pyridoxal 5'-phosphate biosynthesis and salvage)3291530.4022
PWY0-1337 (oleate β-oxidation)1991110.4002



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG20248   EG12036   EG11066   
G68160.9999030.9999020.999154
EG202480.9998990.999125
EG120360.999145
EG11066



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PAIRWISE BLAST SCORES:

  G6816   EG20248   EG12036   EG11066   
G68160.0f000-
EG2024800.0f00-
EG12036000.0f0-
EG11066---0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- GALACT-GLUCUROCAT-PWY (superpathway of hexuronide and hexuronate degradation) (degree of match pw to cand: 0.286, degree of match cand to pw: 0.500, average score: 0.943)
  Genes in pathway or complex:
             0.9992 0.9977 EG11065 (uxaB) ALTRO-OXIDOREDUCT-MONOMER (altronate oxidoreductase)
             0.9909 0.9678 EG12734 (uxaA) ALTRODEHYDRAT-MONOMER (D-altronate dehydratase)
             0.9803 0.9771 EG11055 (uidA) BETA-GLUCURONID-MONOMER (β-D-glucuronidase)
             0.9990 0.9982 G81 (uxaC) UXAC-MONOMER (D-glucuronate isomerase / D-galacturonate isomerase)
   *in cand* 0.9997 0.9991 EG20248 (uxuB) MANNONOXIDOREDUCT-MONOMER (D-mannonate oxidoreductase)
             0.9959 0.9935 EG12253 (kdgK) DEOXYGLUCONOKIN-MONOMER (2-keto-3-deoxygluconokinase)
   *in cand* 0.9994 0.9991 EG11066 (uxuA) MANNONDEHYDRAT-MONOMER (D-mannonate dehydratase)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9997 0.9991 EG12036 (yeiQ) EG12036-MONOMER (predicted dehydrogenase, NAD-dependent)
   *in cand* 0.9997 0.9992 G6816 (ydfI) G6816-MONOMER (predicted mannonate dehydrogenase)

- GLUCUROCAT-PWY (β-D-glucuronide and D-glucuronate degradation) (degree of match pw to cand: 0.400, degree of match cand to pw: 0.500, average score: 0.944)
  Genes in pathway or complex:
   *in cand* 0.9994 0.9991 EG11066 (uxuA) MANNONDEHYDRAT-MONOMER (D-mannonate dehydratase)
             0.9959 0.9935 EG12253 (kdgK) DEOXYGLUCONOKIN-MONOMER (2-keto-3-deoxygluconokinase)
   *in cand* 0.9997 0.9991 EG20248 (uxuB) MANNONOXIDOREDUCT-MONOMER (D-mannonate oxidoreductase)
             0.9990 0.9982 G81 (uxaC) UXAC-MONOMER (D-glucuronate isomerase / D-galacturonate isomerase)
             0.9803 0.9771 EG11055 (uidA) BETA-GLUCURONID-MONOMER (β-D-glucuronidase)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9997 0.9991 EG12036 (yeiQ) EG12036-MONOMER (predicted dehydrogenase, NAD-dependent)
   *in cand* 0.9997 0.9992 G6816 (ydfI) G6816-MONOMER (predicted mannonate dehydrogenase)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG11066 EG20248 (centered at EG20248)
EG12036 (centered at EG12036)
G6816 (centered at G6816)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G6816   EG20248   EG12036   EG11066   
187/623189/623186/623135/623
AAUR290340:2:Tyes000-
ACAU438753:0:Tyes5855855850
ACEL351607:0:Tyes000-
ACRY349163:8:Tyes1110
AHYD196024:0:Tyes000-
AMET293826:0:Tyes724003158
ANAE240017:0:Tyes000-
APLE416269:0:Tyes-0--
ASAL382245:5:Tyes000-
ASP1667:3:Tyes000-
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