CANDIDATE ID: 912

CANDIDATE ID: 912

NUMBER OF GENES: 4
AVERAGE SCORE:    9.9933667e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    5.0000037e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7590 (rfaE) (b3052)
   Products of gene:
     - G7590-MONOMER (fused heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase)
     - CPLX0-3661 (fused heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase)
       Reactions:
        D-glycero-beta-D-manno-heptose 1-phosphate + ATP  ->  ADP-D-glycero-beta-D-manno-heptose + diphosphate
         In pathways
         PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)
        D-glycero-D-manno-heptose-7-phosphate + ATP  ->  D-glycero-beta-D-manno-heptose 1,7-diphosphate + ADP + 2 H+
         In pathways
         PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)

- EG12210 (waaF) (b3620)
   Products of gene:
     - EG12210-MONOMER (ADP-heptose:LPS heptosyltransferase II)
       Reactions:
        heptosyl-KDO2-lipid A + ADP-L-glycero-beta-D-manno-heptose  ->  heptosyl2-KDO2-lipid A + ADP + H+
         In pathways
         LPSSYN-PWY (superpathway of lipopolysaccharide biosynthesis)
         LIPA-CORESYN-PWY (Lipid A-core biosynthesis)

- EG11189 (waaC) (b3621)
   Products of gene:
     - EG11189-MONOMER (ADP-heptose:LPS heptosyl transferase I)
       Reactions:
        KDO2-lipid A + ADP-L-glycero-beta-D-manno-heptose + 2 H+  ->  heptosyl-KDO2-lipid A + ADP
         In pathways
         LPSSYN-PWY (superpathway of lipopolysaccharide biosynthesis)
         LIPA-CORESYN-PWY (Lipid A-core biosynthesis)
        alpha-KDO-(2->4)-alpha-KDO-(2->6)-lipid IVA + ADP-L-glycero-beta-D-manno-heptose  =  heptosyl-KDO2-lipid IVA + ADP + H+

- EG10838 (rfaD) (b3619)
   Products of gene:
     - EG10838-MONOMER (ADP-L-glycero-D-mannoheptose-6-epimerase)
     - CPLX0-3681 (ADP-L-glycero-D-mannoheptose-6-epimerase)
       Reactions:
        ADP-D-glycero-beta-D-manno-heptose  ->  ADP-L-glycero-beta-D-manno-heptose
         In pathways
         PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)



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ORGANISMS CONTAINING AT LEAST 3 GENES FROM THE GROUP:

Total number of orgs: 213
Effective number of orgs (counting one per cluster within 468 clusters): 152

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317584
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329534
YPES386656 ncbi Yersinia pestis Pestoides F4
YPES377628 ncbi Yersinia pestis Nepal5164
YPES360102 ncbi Yersinia pestis Antiqua4
YPES349746 ncbi Yersinia pestis Angola4
YPES214092 ncbi Yersinia pestis CO924
YPES187410 ncbi Yersinia pestis KIM 104
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80814
XAUT78245 ncbi Xanthobacter autotrophicus Py24
WSUC273121 ncbi Wolinella succinogenes DSM 17404
VVUL216895 ncbi Vibrio vulnificus CMCP64
VVUL196600 ncbi Vibrio vulnificus YJ0164
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106333
VFIS312309 ncbi Vibrio fischeri ES1144
VCHO345073 ncbi Vibrio cholerae O3954
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169613
TROS309801 ncbi Thermomicrobium roseum DSM 51594
TFUS269800 ncbi Thermobifida fusca YX3
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12514
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252594
TCRU317025 ncbi Thiomicrospira crunogena XCL-24
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT24
STRO369723 ncbi Salinispora tropica CNB-4403
SSP94122 ncbi Shewanella sp. ANA-33
SSON300269 ncbi Shigella sonnei Ss0464
SPRO399741 ncbi Serratia proteamaculans 5684
SLOI323850 ncbi Shewanella loihica PV-43
SHIGELLA ncbi Shigella flexneri 2a str. 2457T4
SHAL458817 ncbi Shewanella halifaxensis HAW-EB43
SGLO343509 ncbi Sodalis glossinidius morsitans4
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB4
SFLE373384 ncbi Shigella flexneri 5 str. 84014
SFLE198214 ncbi Shigella flexneri 2a str. 3014
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23383
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4764
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B674
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91504
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT184
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty24
SDYS300267 ncbi Shigella dysenteriae Sd1974
SDEN318161 ncbi Shewanella denitrificans OS2173
SBOY300268 ncbi Shigella boydii Sb2274
SARE391037 ncbi Salinispora arenicola CNS-2053
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99414
RSOL267608 ncbi Ralstonia solanacearum GMI10004
RPAL316058 ncbi Rhodopseudomonas palustris HaA24
RPAL316057 ncbi Rhodopseudomonas palustris BisB54
RPAL316056 ncbi Rhodopseudomonas palustris BisB184
RPAL316055 ncbi Rhodopseudomonas palustris BisA534
RPAL258594 ncbi Rhodopseudomonas palustris CGA0094
RMET266264 ncbi Ralstonia metallidurans CH344
RFER338969 ncbi Rhodoferax ferrireducens T1184
REUT381666 ncbi Ralstonia eutropha H164
REUT264198 ncbi Ralstonia eutropha JMP1344
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30004
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a3
PSTU379731 ncbi Pseudomonas stutzeri A15014
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-14
PSP296591 ncbi Polaromonas sp. JS6664
PPUT76869 ncbi Pseudomonas putida GB-14
PPUT351746 ncbi Pseudomonas putida F13
PPUT160488 ncbi Pseudomonas putida KT24403
PPRO298386 ncbi Photobacterium profundum SS93
PNAP365044 ncbi Polaromonas naphthalenivorans CJ24
PMUL272843 ncbi Pasteurella multocida multocida Pm704
PMEN399739 ncbi Pseudomonas mendocina ymp3
PLUT319225 ncbi Chlorobium luteolum DSM 2733
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO14
PING357804 ncbi Psychromonas ingrahamii 374
PFLU220664 ncbi Pseudomonas fluorescens Pf-53
PFLU216595 ncbi Pseudomonas fluorescens SBW254
PFLU205922 ncbi Pseudomonas fluorescens Pf0-13
PENT384676 ncbi Pseudomonas entomophila L483
PCAR338963 ncbi Pelobacter carbinolicus DSM 23804
PAER208964 ncbi Pseudomonas aeruginosa PAO14
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA144
OCAR504832 ncbi Oligotropha carboxidovorans OM54
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2554
NSP387092 ncbi Nitratiruptor sp. SB155-23
NOCE323261 ncbi Nitrosococcus oceani ATCC 197074
NMUL323848 ncbi Nitrosospira multiformis ATCC 251963
NMEN374833 ncbi Neisseria meningitidis 0534424
NMEN272831 ncbi Neisseria meningitidis FAM184
NMEN122587 ncbi Neisseria meningitidis Z24914
NMEN122586 ncbi Neisseria meningitidis MC584
NHAM323097 ncbi Nitrobacter hamburgensis X144
NGON242231 ncbi Neisseria gonorrhoeae FA 10904
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E4
MSP400668 ncbi Marinomonas sp. MWYL14
MPET420662 ncbi Methylibium petroleiphilum PM13
MMAG342108 ncbi Magnetospirillum magneticum AMB-13
MLOT266835 ncbi Mesorhizobium loti MAFF3030994
MFLA265072 ncbi Methylobacillus flagellatus KT4
MCAP243233 ncbi Methylococcus capsulatus Bath4
MAVI243243 ncbi Mycobacterium avium 1043
MAQU351348 ncbi Marinobacter aquaeolei VT84
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-003
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1304
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566014
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1974
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5504
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)4
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)4
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785784
HSOM228400 ncbi Haemophilus somnus 23364
HSOM205914 ncbi Haemophilus somnus 129PT4
HPYL85963 ncbi Helicobacter pylori J994
HPYL357544 ncbi Helicobacter pylori HPAG14
HPY ncbi Helicobacter pylori 266954
HINF71421 ncbi Haemophilus influenzae Rd KW203
HINF374930 ncbi Haemophilus influenzae PittEE4
HINF281310 ncbi Haemophilus influenzae 86-028NP4
HHEP235279 ncbi Helicobacter hepaticus ATCC 514494
HDUC233412 ncbi Haemophilus ducreyi 35000HP4
HCHE349521 ncbi Hahella chejuensis KCTC 23964
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237794
HACI382638 ncbi Helicobacter acinonychis Sheeba4
GVIO251221 ncbi Gloeobacter violaceus PCC 74213
GURA351605 ncbi Geobacter uraniireducens Rf43
GSUL243231 ncbi Geobacter sulfurreducens PCA3
GOXY290633 ncbi Gluconobacter oxydans 621H3
GMET269799 ncbi Geobacter metallireducens GS-154
GBET391165 ncbi Granulibacter bethesdensis CGDNIH13
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255864
FALN326424 ncbi Frankia alni ACN14a3
ESP42895 Enterobacter sp.4
EFER585054 ncbi Escherichia fergusonii ATCC 354694
ECOO157 ncbi Escherichia coli O157:H7 EDL9334
ECOL83334 Escherichia coli O157:H74
ECOL585397 ncbi Escherichia coli ED1a4
ECOL585057 ncbi Escherichia coli IAI394
ECOL585056 ncbi Escherichia coli UMN0264
ECOL585055 ncbi Escherichia coli 559894
ECOL585035 ncbi Escherichia coli S884
ECOL585034 ncbi Escherichia coli IAI14
ECOL481805 ncbi Escherichia coli ATCC 87394
ECOL469008 ncbi Escherichia coli BL21(DE3)4
ECOL439855 ncbi Escherichia coli SMS-3-54
ECOL413997 ncbi Escherichia coli B str. REL6064
ECOL409438 ncbi Escherichia coli SE114
ECOL405955 ncbi Escherichia coli APEC O14
ECOL364106 ncbi Escherichia coli UTI894
ECOL362663 ncbi Escherichia coli 5364
ECOL331111 ncbi Escherichia coli E24377A4
ECOL316407 ncbi Escherichia coli K-12 substr. W31104
ECOL199310 ncbi Escherichia coli CFT0734
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10434
DNOD246195 ncbi Dichelobacter nodosus VCS1703A3
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G204
DARO159087 ncbi Dechloromonas aromatica RCB4
CVIO243365 ncbi Chromobacterium violaceum ATCC 124724
CTEP194439 ncbi Chlorobium tepidum TLS3
CSP78 Caulobacter sp.4
CSAL290398 ncbi Chromohalobacter salexigens DSM 30434
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE254
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3823
CMIC31964 ncbi Clavibacter michiganensis sepedonicus3
CJEJ407148 ncbi Campylobacter jejuni jejuni 811164
CJEJ360109 ncbi Campylobacter jejuni doylei 269.974
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1764
CJEJ195099 ncbi Campylobacter jejuni RM12214
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111684
CJAP155077 Cellvibrio japonicus3
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334063
CFET360106 ncbi Campylobacter fetus fetus 82-404
CCUR360105 ncbi Campylobacter curvus 525.924
CCON360104 ncbi Campylobacter concisus 138264
CCHL340177 ncbi Chlorobium chlorochromatii CaD33
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1114
CBUR360115 ncbi Coxiella burnetii RSA 3314
CBUR227377 ncbi Coxiella burnetii RSA 4934
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN4
CBLO203907 ncbi Candidatus Blochmannia floridanus4
CAULO ncbi Caulobacter crescentus CB153
BVIE269482 ncbi Burkholderia vietnamiensis G44
BTHA271848 ncbi Burkholderia thailandensis E2644
BSP376 Bradyrhizobium sp.3
BSP36773 Burkholderia sp.4
BPSE320373 ncbi Burkholderia pseudomallei 6684
BPSE320372 ncbi Burkholderia pseudomallei 1710b4
BPSE272560 ncbi Burkholderia pseudomallei K962434
BPET94624 Bordetella petrii4
BPER257313 ncbi Bordetella pertussis Tohama I4
BPAR257311 ncbi Bordetella parapertussis 128224
BMAL320389 ncbi Burkholderia mallei NCTC 102474
BMAL320388 ncbi Burkholderia mallei SAVP14
BMAL243160 ncbi Burkholderia mallei ATCC 233444
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1103
BCEN331272 ncbi Burkholderia cenocepacia HI24244
BCEN331271 ncbi Burkholderia cenocepacia AU 10544
BBRO257310 ncbi Bordetella bronchiseptica RB504
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1004
BAMB398577 ncbi Burkholderia ambifaria MC40-64
BAMB339670 ncbi Burkholderia ambifaria AMMD4
ASP76114 ncbi Aromatoleum aromaticum EbN14
ASP62928 ncbi Azoarcus sp. BH724
ASP1667 Arthrobacter sp.4
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4494
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL034
APLE416269 ncbi Actinobacillus pleuropneumoniae L204
AHYD196024 Aeromonas hydrophila dhakensis4
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232704
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-14
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C3
ACRY349163 ncbi Acidiphilium cryptum JF-53
ACAU438753 ncbi Azorhizobium caulinodans ORS 5714
ABUT367737 ncbi Arcobacter butzleri RM40184
ABOR393595 ncbi Alcanivorax borkumensis SK23
ABAU360910 ncbi Bordetella avium 197N4
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3454
AAUR290340 ncbi Arthrobacter aurescens TC14
AAEO224324 ncbi Aquifex aeolicus VF54


Names of the homologs of the genes in the group in each of these orgs
  G7590   EG12210   EG11189   EG10838   
YPSE349747 YPSIP31758_0564YPSIP31758_0069YPSIP31758_0068YPSIP31758_0070
YPSE273123 YPTB3407YPTB0054YPTB0053YPTB0055
YPES386656 YPDSF_0438YPDSF_3848YPDSF_3849YPDSF_3847
YPES377628 YPN_0514YPN_3793YPN_3794YPN_3792
YPES360102 YPA_3136YPA_3485YPA_3486YPA_3484
YPES349746 YPANGOLA_A0292YPANGOLA_A0063YPANGOLA_A0062YPANGOLA_A0064
YPES214092 YPO0654YPO0057YPO0056YPO0058
YPES187410 Y3524Y0084Y0085Y0083
YENT393305 YE3673YE0071YE0070YE0072
XAUT78245 XAUT_3773XAUT_3770XAUT_3771XAUT_3772
WSUC273121 WS0680WS1450WS1909WS0679
VVUL216895 VV1_0613VV1_0798VV1_0816VV1_0796
VVUL196600 VV0582VV0325VV0295VV0327
VPAR223926 VP0424VP0212VP0214
VFIS312309 VF2234VF0139VF0135VF0152
VCHO345073 VC0395_A2014VC0395_A2616VC0395_A2606VC0395_A2620
VCHO VC0236VC0225VC0240
TROS309801 TRD_1544TRD_0660TRD_0660TRD_1747
TFUS269800 TFU_2196TFU_0894TFU_0894
TDEN326298 TMDEN_0580TMDEN_0582TMDEN_0589TMDEN_0579
TDEN292415 TBD_0962TBD_1870TBD_0742TBD_0963
TCRU317025 TCR_0505TCR_1516TCR_1516TCR_1517
STYP99287 STM3200STM3711STM3712STM3710
STRO369723 STROP_3975STROP_1766STROP_3977
SSP94122 SHEWANA3_0849SHEWANA3_4100SHEWANA3_4100
SSON300269 SSO_3189SSO_3785SSO_3784SSO_3786
SPRO399741 SPRO_4289SPRO_4826SPRO_4827SPRO_4825
SLOI323850 SHEW_0659SHEW_3702SHEW_3694
SHIGELLA S3298RFAFRFACRFAD
SHAL458817 SHAL_3550SHAL_2293SHAL_4211
SGLO343509 SG0261SG2194SG2195SG2193
SFUM335543 SFUM_3634SFUM_0377SFUM_0375SFUM_2748
SFLE373384 SFV_3092SFV_3908SFV_3907SFV_3909
SFLE198214 AAN44569.1AAN45107.1AAN45108.1AAN45106.1
SERY405948 SACE_5569SACE_5567SACE_5567
SENT454169 SEHA_C3454SEHA_C4036SEHA_C4037SEHA_C4035
SENT321314 SCH_3147SCH_3634SCH_3635SCH_3633
SENT295319 SPA3068SPA3563SPA3564SPA3562
SENT220341 STY3379STY4084STY4083STY4085
SENT209261 T3120T3808T3807T3809
SDYS300267 SDY_3235SDY_4052SDY_4053SDY_4051
SDEN318161 SDEN_0709SDEN_3611SDEN_3611
SBOY300268 SBO_2908SBO_3625SBO_3626SBO_3624
SARE391037 SARE_4360SARE_1752SARE_4362
RXYL266117 RXYL_0711RXYL_0710RXYL_0710RXYL_3113
RSOL267608 RSC0914RSC0565RSC0692RSC0915
RPAL316058 RPB_1603RPB_1601RPB_1598RPB_1602
RPAL316057 RPD_1615RPD_1613RPD_1610RPD_1614
RPAL316056 RPC_1432RPC_1430RPC_1428RPC_1431
RPAL316055 RPE_1453RPE_1451RPE_1449RPE_1452
RPAL258594 RPA3984RPA3986RPA3989RPA3985
RMET266264 RMET_0727RMET_0491RMET_2715RMET_0728
RFER338969 RFER_1562RFER_0508RFER_2998RFER_1561
REUT381666 H16_A0803H16_A0559H16_A2884H16_A0804
REUT264198 REUT_A2564REUT_A0545REUT_A0746REUT_A2563
PSYR223283 PSPTO_4983PSPTO_5003PSPTO_5002PSPTO_0678
PSYR205918 PSYR_0537PSYR_0520PSYR_0521
PSTU379731 PST_3825PST_3849PST_3848PST_0816
PSP312153 PNUC_0504PNUC_1820PNUC_0257PNUC_0505
PSP296591 BPRO_1785BPRO_0205BPRO_1640BPRO_1784
PPUT76869 PPUTGB1_4983PPUTGB1_0369PPUTGB1_0370PPUTGB1_2609
PPUT351746 PPUT_4806PPUT_0366PPUT_0367
PPUT160488 PP_4934PP_0341PP_0342
PPRO298386 PBPRA0449PBPRA0209PBPRA0220
PNAP365044 PNAP_2800PNAP_0149PNAP_1109PNAP_2801
PMUL272843 PM0884PM1844PM1843PM1342
PMEN399739 PMEN_0597PMEN_0579PMEN_0580
PLUT319225 PLUT_0964PLUT_1796PLUT_1208
PLUM243265 PLU3968PLU4848PLU4849PLU4847
PING357804 PING_3361PING_0334PING_0329PING_0335
PFLU220664 PFL_0530PFL_0511PFL_0512
PFLU216595 PFLU0482PFLU0462PFLU0463PFLU0483
PFLU205922 PFL_0484PFL_0465PFL_0466
PENT384676 PSEEN4986PSEEN5143PSEEN5142
PCAR338963 PCAR_1282PCAR_1263PCAR_1264PCAR_0024
PAER208964 PA4996PA5012PA5011PA3337
PAER208963 PA14_66060PA14_66250PA14_66240PA14_20890
OCAR504832 OCAR_5335OCAR_5333OCAR_5330OCAR_5334
NWIN323098 NWI_1071NWI_1069NWI_1066NWI_1070
NSP387092 NIS_1448NIS_1446NIS_1449
NOCE323261 NOC_2613NOC_0561NOC_0578NOC_2614
NMUL323848 NMUL_A1792NMUL_A1791NMUL_A1783
NMEN374833 NMCC_0786NMCC_1433NMCC_2115NMCC_0789
NMEN272831 NMC0769NMC1456NMC2134NMC0773
NMEN122587 NMA1034NMA1727NMA0243NMA1037
NMEN122586 NMB_0825NMB_1527NMB_2156NMB_0828
NHAM323097 NHAM_1299NHAM_1297NHAM_1294NHAM_1298
NGON242231 NGO0402NGO0987NGO1934NGO0403
MSUC221988 MS1262MS2260MS2259MS0146
MSP400668 MMWYL1_3475MMWYL1_3478MMWYL1_1695MMWYL1_3477
MPET420662 MPE_A2248MPE_A3550MPE_A2764
MMAG342108 AMB0778AMB0528AMB0596
MLOT266835 MLL2562MLR2566MLR2567MLR2565
MFLA265072 MFLA_0769MFLA_0768MFLA_0753MFLA_0771
MCAP243233 MCA_1736MCA_2713MCA_2713MCA_2451
MAVI243243 MAV_4089MAV_4091MAV_4091
MAQU351348 MAQU_0786MAQU_0789MAQU_0785MAQU_0788
LINT363253 LI0816LI0698LI0621
LINT267671 LIC_11538LIC_11312LIC_11312LIC_11616
LINT189518 LA2411LA2688LA2173LA2326
LBOR355277 LBJ_1453LBJ_1021LBJ_1845LBJ_1298
LBOR355276 LBL_1677LBL_2013LBL_1439LBL_1523
LBIF456481 LEPBI_I1643LEPBI_I1789LEPBI_I1003LEPBI_I1982
LBIF355278 LBF_1593LBF_1736LBF_0971LBF_1932
KPNE272620 GKPORF_B2789GKPORF_B3325GKPORF_B3326GKPORF_B3324
HSOM228400 HSM_0925HSM_0398HSM_0399HSM_0397
HSOM205914 HS_0576HS_1612HS_1611HS_1613
HPYL85963 JHP0792JHP1116JHP0264JHP0793
HPYL357544 HPAG1_0841HPAG1_1132HPAG1_0281HPAG1_0842
HPY HP0858HP1191HP0279HP0859
HINF71421 HI_1526HI_1105HI_1114
HINF374930 CGSHIEE_05200CGSHIEE_06535CGSHIEE_06535CGSHIEE_06480
HINF281310 NTHI1607NTHI1272NTHI1272NTHI1278
HHEP235279 HH_1532HH_1808HH_0983HH_1533
HDUC233412 HD_1182HD_0653HD_0445HD_1890
HCHE349521 HCH_01059HCH_01046HCH_01047HCH_04939
HAUR316274 HAUR_1029HAUR_3431HAUR_3431HAUR_4278
HACI382638 HAC_1221HAC_1567HAC_0537HAC_1222
GVIO251221 GLR2641GLL3112GLR2820
GURA351605 GURA_3211GURA_3226GURA_3214
GSUL243231 GSU_2085GSU_2256GSU_2242
GOXY290633 GOX1023GOX0821GOX1134
GMET269799 GMET_0922GMET_2345GMET_2331GMET_2329
GBET391165 GBCGDNIH1_0513GBCGDNIH1_0328GBCGDNIH1_1533
FNUC190304 FN1786FN0546FN0546FN1703
FALN326424 FRAAL3935FRAAL3929FRAAL3929
ESP42895 ENT638_3455ENT638_0116ENT638_0115ENT638_0117
EFER585054 EFER_2996EFER_3909EFER_3910EFER_3908
ECOO157 Z4405RFAFRFACRFAD
ECOL83334 ECS3935ECS4498ECS4499ECS4497
ECOL585397 ECED1_3720ECED1_4306ECED1_4307ECED1_4305
ECOL585057 ECIAI39_3548ECIAI39_4140ECIAI39_4141ECIAI39_4139
ECOL585056 ECUMN_3534ECUMN_4137ECUMN_4138ECUMN_4136
ECOL585055 EC55989_3466EC55989_4087EC55989_4088EC55989_4086
ECOL585035 ECS88_3449ECS88_4036ECS88_4037ECS88_4035
ECOL585034 ECIAI1_3199ECIAI1_3792ECIAI1_3793ECIAI1_3791
ECOL481805 ECOLC_0647ECOLC_0089ECOLC_0088ECOLC_0090
ECOL469008 ECBD_0689ECBD_0106ECBD_0105ECBD_0107
ECOL439855 ECSMS35_3344ECSMS35_3957ECSMS35_3958ECSMS35_3956
ECOL413997 ECB_02922ECB_03477ECB_03478ECB_03476
ECOL409438 ECSE_3332ECSE_3903ECSE_3904ECSE_3902
ECOL405955 APECO1_3362APECO1_2836APECO1_2835APECO1_2837
ECOL364106 UTI89_C3488UTI89_C4165UTI89_C4166UTI89_C4164
ECOL362663 ECP_3141ECP_3720ECP_3721ECP_3719
ECOL331111 ECE24377A_3515ECE24377A_4123ECE24377A_4124ECE24377A_4122
ECOL316407 ECK3042:JW3024:B3052ECK3610:JW3595:B3620ECK3611:JW3596:B3621ECK3609:JW3594:B3619
ECOL199310 C3800C4446C4447C4445
ECAR218491 ECA3584ECA0164ECA0163ECA0165
DNOD246195 DNO_0095DNO_0888DNO_1031
DDES207559 DDE_0028DDE_1482DDE_1629DDE_3466
DARO159087 DARO_1285DARO_3296DARO_3928DARO_1286
CVIO243365 CV_3040CV_2092CV_0226CV_3038
CTEP194439 CT_1168CT_2137CT_1258
CSP78 CAUL_4946CAUL_1197CAUL_1197CAUL_2918
CSAL290398 CSAL_0017CSAL_0009CSAL_0016CSAL_0008
CPRO264201 PC1587PC0017PC0707PC1588
CMIC443906 CMM_2702CMM_2674CMM_2674
CMIC31964 CMS2661CMS2646CMS2646
CJEJ407148 C8J_1096C8J_1092C8J_1073C8J_1097
CJEJ360109 JJD26997_0578JJD26997_0580JJD26997_0588JJD26997_0577
CJEJ354242 CJJ81176_1167CJJ81176_1164CJJ81176_1150CJJ81176_1168
CJEJ195099 CJE_1286CJE_1283CJE_1275CJE_1287
CJEJ192222 CJ1150CCJ1148CJ1133CJ1151C
CJAP155077 CJA_0509CJA_0502CJA_1369
CHUT269798 CHU_0783CHU_1683CHU_1387
CFET360106 CFF8240_1413CFF8240_1411CFF8240_1399CFF8240_1414
CCUR360105 CCV52592_0244CCV52592_1237CCV52592_1228CCV52592_0243
CCON360104 CCC13826_0577CCC13826_0479CCC13826_0470CCC13826_0576
CCHL340177 CAG_0806CAG_0093CAG_1084
CBUR434922 COXBU7E912_0342COXBU7E912_0337COXBU7E912_2105COXBU7E912_0894
CBUR360115 COXBURSA331_A1838COXBURSA331_A1852COXBURSA331_A0081COXBURSA331_A1121
CBUR227377 CBU_1655CBU_1661CBU_2004CBU_0829
CBLO291272 BPEN_065BPEN_631BPEN_632BPEN_630
CBLO203907 BFL063BFL608BFL609BFL607
CAULO CC3640CC0386CC1430
BVIE269482 BCEP1808_0973BCEP1808_2748BCEP1808_0827BCEP1808_0974
BTHA271848 BTH_I1643BTH_I0658BTH_I1490BTH_I1644
BSP376 BRADO5201BRADO5203BRADO5202
BSP36773 BCEP18194_A4165BCEP18194_A5964BCEP18194_A4000BCEP18194_A4166
BPSE320373 BURPS668_2877BURPS668_0828BURPS668_3082BURPS668_2876
BPSE320372 BURPS1710B_A3236BURPS1710B_A1043BURPS1710B_A3405BURPS1710B_A3235
BPSE272560 BPSL2510BPSL0791BPSL2665BPSL2509
BPET94624 BPET1894BPET2385BPET4813BPET1895
BPER257313 BP0954BP2322BP0094BP0955
BPAR257311 BPP3124BPP1717BPP0156BPP3123
BMAL320389 BMA10247_0207BMA10247_0032BMA10247_2063BMA10247_0208
BMAL320388 BMASAVP1_A2566BMASAVP1_A0586BMASAVP1_A0717BMASAVP1_A2565
BMAL243160 BMA_0422BMA_0291BMA_2190BMA_0421
BJAP224911 BLL5927BLR5929BLL5928
BCEN331272 BCEN2424_1052BCEN2424_2633BCEN2424_0894BCEN2424_1053
BCEN331271 BCEN_0573BCEN_2022BCEN_0415BCEN_0574
BBRO257310 BB3463BB3391BB0156BB3462
BBAC264462 BD0720BD2366BD2366BD3536
BAMB398577 BAMMC406_0932BAMMC406_2553BAMMC406_0784BAMMC406_0933
BAMB339670 BAMB_0928BAMB_2680BAMB_0773BAMB_0929
ASP76114 EBA4001EBA3998EBA3997EBA3999
ASP62928 AZO3563AZO3565AZO3566AZO3564
ASP1667 ARTH_0361ARTH_0359ARTH_0351ARTH_4059
ASAL382245 ASA_0522ASA_4220ASA_0037ASA_0093
APLE434271 APJL_0423APJL_1428APJL_1427APJL_1742
APLE416269 APL_0402APL_1403APL_1402APL_1710
AHYD196024 AHA_3767AHA_0169AHA_0042AHA_4232
AFER243159 AFE_1675AFE_2887AFE_2793AFE_1125
AEHR187272 MLG_2810MLG_2792MLG_2806MLG_2809
ADEH290397 ADEH_2611ADEH_2614ADEH_2614
ACRY349163 ACRY_0354ACRY_0263ACRY_0426
ACAU438753 AZC_2254AZC_2251AZC_2252AZC_2253
ABUT367737 ABU_1797ABU_1800ABU_1822ABU_1796
ABOR393595 ABO_2290ABO_2300ABO_2298
ABAU360910 BAV1358BAV2230BAV0125BAV1359
ABAC204669 ACID345_3810ACID345_4721ACID345_4721ACID345_3812
AAUR290340 AAUR_0119AAUR_0110AAUR_0112AAUR_2151
AAEO224324 AQ_565AQ_145AQ_145AQ_344


Organism features enriched in list (features available for 204 out of the 213 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00023071892
Arrangment:Clusters 0.0055565117
Arrangment:Singles 0.0000935121286
Disease:Bubonic_plague 0.001748966
Disease:Dysentery 0.001748966
Disease:Gastroenteritis 0.00002341213
Endospores:No 0.000012051211
Endospores:Yes 7.715e-6553
GC_Content_Range4:0-40 1.479e-1532213
GC_Content_Range4:40-60 0.0000223101224
GC_Content_Range4:60-100 0.000025171145
GC_Content_Range7:0-30 0.0000133447
GC_Content_Range7:30-40 1.237e-928166
GC_Content_Range7:50-60 1.333e-863107
GC_Content_Range7:60-70 0.000091565134
Genome_Size_Range5:0-2 2.226e-1122155
Genome_Size_Range5:2-4 0.001647854197
Genome_Size_Range5:4-6 3.013e-11100184
Genome_Size_Range5:6-10 0.00020212847
Genome_Size_Range9:0-1 0.0007404227
Genome_Size_Range9:1-2 3.447e-820128
Genome_Size_Range9:2-3 0.005095131120
Genome_Size_Range9:4-5 4.697e-65396
Genome_Size_Range9:5-6 0.00005774788
Genome_Size_Range9:6-8 0.00004792538
Gram_Stain:Gram_Neg 1.645e-31180333
Gram_Stain:Gram_Pos 3.366e-2010150
Habitat:Multiple 0.000084982178
Habitat:Specialized 0.00374191053
Motility:No 2.077e-826151
Motility:Yes 1.824e-8125267
Optimal_temp.:28-30 0.000600177
Optimal_temp.:30 0.00895511015
Optimal_temp.:35-37 9.130e-71313
Oxygen_Req:Anaerobic 4.234e-715102
Oxygen_Req:Facultative 0.000064691201
Oxygen_Req:Microaerophilic 0.00002471518
Pathogenic_in:Animal 0.00598483266
Pathogenic_in:No 0.003009365226
Shape:Coccus 4.696e-71082
Shape:Rod 4.693e-6146347
Shape:Spiral 0.00001162434
Temp._range:Hyperthermophilic 0.0005154123
Temp._range:Mesophilic 0.0000302183473
Temp._range:Thermophilic 0.0098389635



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 337
Effective number of orgs (counting one per cluster within 468 clusters): 258

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM40
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A1
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110180
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103311
XFAS405440 ncbi Xylella fastidiosa M120
XFAS183190 ncbi Xylella fastidiosa Temecula10
XFAS160492 ncbi Xylella fastidiosa 9a5c0
XCAM487884 Xanthomonas campestris pv. paulliniae0
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-100
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80040
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339130
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3060
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
VEIS391735 ncbi Verminephrobacter eiseniae EF01-20
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I1
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS11
TTUR377629 ncbi Teredinibacter turnerae T79011
TTHE300852 ncbi Thermus thermophilus HB81
TTHE262724 ncbi Thermus thermophilus HB271
TSP1755 Thermoanaerobacter sp.1
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332231
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TMAR243274 ncbi Thermotoga maritima MSB81
TLET416591 ncbi Thermotoga lettingae TMO1
TELO197221 ncbi Thermosynechococcus elongatus BP-11
TDEN243275 ncbi Treponema denticola ATCC 354050
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen1
STOK273063 ncbi Sulfolobus tokodaii 70
STHE322159 ncbi Streptococcus thermophilus LMD-90
STHE299768 ncbi Streptococcus thermophilus CNRZ10660
STHE264199 ncbi Streptococcus thermophilus LMG 183110
SSUI391296 ncbi Streptococcus suis 98HAH330
SSUI391295 ncbi Streptococcus suis 05ZYH330
SSP84588 ncbi Synechococcus sp. WH 81020
SSP64471 ncbi Synechococcus sp. CC93110
SSP644076 Silicibacter sp. TrichCH4B1
SSP387093 ncbi Sulfurovum sp. NBC37-10
SSP292414 ncbi Ruegeria sp. TM10401
SSP1148 ncbi Synechocystis sp. PCC 68031
SSP1131 Synechococcus sp. CC96050
SSOL273057 ncbi Sulfolobus solfataricus P20
SRUB309807 ncbi Salinibacter ruber DSM 138550
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370552 ncbi Streptococcus pyogenes MGAS102700
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103940
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SPNE488221 ncbi Streptococcus pneumoniae 705850
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-60
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-140
SPNE171101 ncbi Streptococcus pneumoniae R60
SPNE170187 ncbi Streptococcus pneumoniae G540
SPNE1313 Streptococcus pneumoniae0
SMUT210007 ncbi Streptococcus mutans UA1590
SMEL266834 ncbi Sinorhizobium meliloti 10211
SMED366394 ncbi Sinorhizobium medicae WSM4191
SMAR399550 ncbi Staphylothermus marinus F10
SLAC55218 Ruegeria lacuscaerulensis1
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14350
SGOR29390 Streptococcus gordonii Challis0
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122280
SEPI176279 ncbi Staphylococcus epidermidis RP62A0
SDEG203122 ncbi Saccharophagus degradans 2-401
SAVE227882 ncbi Streptomyces avermitilis MA-46800
SAUR93062 ncbi Staphylococcus aureus aureus COL1
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83251
SAUR426430 ncbi Staphylococcus aureus aureus Newman1
SAUR418127 ncbi Staphylococcus aureus aureus Mu31
SAUR367830 Staphylococcus aureus aureus USA3001
SAUR359787 ncbi Staphylococcus aureus aureus JH11
SAUR359786 ncbi Staphylococcus aureus aureus JH91
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4761
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2521
SAUR273036 ncbi Staphylococcus aureus RF1221
SAUR196620 ncbi Staphylococcus aureus aureus MW21
SAUR158879 ncbi Staphylococcus aureus aureus N3151
SAUR158878 ncbi Staphylococcus aureus aureus Mu501
SALA317655 ncbi Sphingopyxis alaskensis RB22560
SAGA211110 ncbi Streptococcus agalactiae NEM3160
SAGA208435 ncbi Streptococcus agalactiae 2603V/R0
SAGA205921 ncbi Streptococcus agalactiae A9090
SACI56780 ncbi Syntrophus aciditrophicus SB1
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RTYP257363 ncbi Rickettsia typhi Wilmington0
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170251
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170291
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.11
RSP101510 ncbi Rhodococcus jostii RHA10
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332090
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RPOM246200 ncbi Ruegeria pomeroyi DSS-30
RMAS416276 ncbi Rickettsia massiliae MTU50
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38411
RFEL315456 ncbi Rickettsia felis URRWXCal20
RETL347834 ncbi Rhizobium etli CFN 421
RDEN375451 ncbi Roseobacter denitrificans OCh 1140
RCON272944 ncbi Rickettsia conorii Malish 70
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RALB246199 Ruminococcus albus 80
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97901
PTHE370438 ncbi Pelotomaculum thermopropionicum SI1
PSP56811 Psychrobacter sp.0
PSP117 Pirellula sp.1
PRUM264731 ncbi Prevotella ruminicola 231
PMOB403833 ncbi Petrotoga mobilis SJ951
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74547 ncbi Prochlorococcus marinus MIT 93130
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR59920 ncbi Prochlorococcus marinus NATL2A0
PMAR167555 ncbi Prochlorococcus marinus NATL1A0
PMAR167546 ncbi Prochlorococcus marinus MIT 93011
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax1
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13751
PMAR146891 ncbi Prochlorococcus marinus AS96011
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 170
PGIN242619 ncbi Porphyromonas gingivalis W830
PDIS435591 ncbi Parabacteroides distasonis ATCC 85031
PCRY335284 ncbi Psychrobacter cryohalolentis K50
PATL342610 ncbi Pseudoalteromonas atlantica T6c0
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135141
PARC259536 ncbi Psychrobacter arcticus 273-40
PAER178306 ncbi Pyrobaculum aerophilum IM20
PACN267747 ncbi Propionibacterium acnes KPA1712020
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
OANT439375 ncbi Ochrobactrum anthropi ATCC 491880
NSP35761 Nocardioides sp.1
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21601
NEUT335283 ncbi Nitrosomonas eutropha C910
NEUR228410 ncbi Nitrosomonas europaea ATCC 197180
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124440
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-10
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra0
MTUB336982 ncbi Mycobacterium tuberculosis F110
MTHE264732 ncbi Moorella thermoacetica ATCC 390731
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H1
MTBRV ncbi Mycobacterium tuberculosis H37Rv0
MTBCDC ncbi Mycobacterium tuberculosis CDC15510
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30911
MSP409 Methylobacterium sp.0
MSP266779 ncbi Chelativorans sp. BNC10
MSP189918 ncbi Mycobacterium sp. KMS0
MSP164757 ncbi Mycobacterium sp. JLS0
MSP164756 ncbi Mycobacterium sp. MCS0
MSME246196 ncbi Mycobacterium smegmatis MC2 1550
MSED399549 ncbi Metallosphaera sedula DSM 53481
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAR394221 ncbi Maricaulis maris MCS100
MMAR368407 ncbi Methanoculleus marisnigri JR11
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z1
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK0
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MEXT419610 ncbi Methylobacterium extorquens PA10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBUR259564 ncbi Methanococcoides burtonii DSM 62421
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P20
MBOV233413 ncbi Mycobacterium bovis AF2122/970
MBAR269797 ncbi Methanosarcina barkeri Fusaro1
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAER449447 ncbi Microcystis aeruginosa NIES-8430
MACE188937 ncbi Methanosarcina acetivorans C2A1
MABS561007 ncbi Mycobacterium abscessus ATCC 199770
LXYL281090 ncbi Leifsonia xyli xyli CTCB070
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53341
LSAK314315 ncbi Lactobacillus sakei sakei 23K1
LREU557436 ncbi Lactobacillus reuteri DSM 200161
LPNE400673 ncbi Legionella pneumophila Corby1
LMON265669 ncbi Listeria monocytogenes 4b F23650
LMON169963 ncbi Listeria monocytogenes EGD-e0
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82930
LLAC272623 ncbi Lactococcus lactis lactis Il14031
LLAC272622 ncbi Lactococcus lactis cremoris SK110
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LINN272626 ncbi Listeria innocua Clip112621
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LBRE387344 ncbi Lactobacillus brevis ATCC 3671
LACI272621 ncbi Lactobacillus acidophilus NCFM0
KRAD266940 ncbi Kineococcus radiotolerans SRS302160
JSP375286 ncbi Janthinobacterium sp. Marseille0
JSP290400 ncbi Jannaschia sp. CCS10
ILOI283942 ncbi Idiomarina loihiensis L2TR0
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I1
HWAL362976 ncbi Haloquadratum walsbyi DSM 167901
HMUK485914 ncbi Halomicrobium mukohataei DSM 122861
HMOD498761 ncbi Heliobacterium modesticaldum Ice11
HMAR272569 ncbi Haloarcula marismortui ATCC 430491
HBUT415426 ncbi Hyperthermus butylicus DSM 54561
HARS204773 ncbi Herminiimonas arsenicoxydans0
GFOR411154 ncbi Gramella forsetii KT08031
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-000
FTUL418136 ncbi Francisella tularensis tularensis WY96-34181
FTUL401614 ncbi Francisella novicida U1121
FTUL393115 ncbi Francisella tularensis tularensis FSC1981
FTUL393011 ncbi Francisella tularensis holarctica OSU180
FTUL351581 Francisella tularensis holarctica FSC2001
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S850
FSP1855 Frankia sp. EAN1pec0
FSP106370 ncbi Frankia sp. CcI30
FRANT ncbi Francisella tularensis tularensis SCHU S41
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250170
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B11
FMAG334413 ncbi Finegoldia magna ATCC 293280
FJOH376686 ncbi Flavobacterium johnsoniae UW1011
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ELIT314225 ncbi Erythrobacter litoralis HTCC25941
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DSP255470 ncbi Dehalococcoides sp. CBDB10
DSP216389 ncbi Dehalococcoides sp. BAV10
DSHI398580 ncbi Dinoroseobacter shibae DFL 120
DRED349161 ncbi Desulfotomaculum reducens MI-11
DRAD243230 ncbi Deinococcus radiodurans R10
DPSY177439 ncbi Desulfotalea psychrophila LSv540
DOLE96561 ncbi Desulfococcus oleovorans Hxd30
DHAF138119 ncbi Desulfitobacterium hafniense Y510
DGEO319795 ncbi Deinococcus geothermalis DSM 113001
DETH243164 ncbi Dehalococcoides ethenogenes 1950
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA0
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTET212717 ncbi Clostridium tetani E880
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CSP501479 Citreicella sp. SE451
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)0
CPSY167879 ncbi Colwellia psychrerythraea 34H0
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPHY357809 ncbi Clostridium phytofermentans ISDg0
CPER289380 ncbi Clostridium perfringens SM1010
CPER195103 ncbi Clostridium perfringens ATCC 131240
CPER195102 ncbi Clostridium perfringens 130
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10621
CNOV386415 ncbi Clostridium novyi NT0
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF81
CKLU431943 ncbi Clostridium kluyveri DSM 5551
CJEI306537 ncbi Corynebacterium jeikeium K4110
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29011
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3810
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130320
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CEFF196164 ncbi Corynebacterium efficiens YS-3140
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131290
CDIF272563 ncbi Clostridium difficile 6300
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C1
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto1
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6571
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B1
CBOT498213 ncbi Clostridium botulinum B1 str. Okra1
CBOT441772 ncbi Clostridium botulinum F str. Langeland1
CBOT441771 ncbi Clostridium botulinum A str. Hall1
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193971
CBOT36826 Clostridium botulinum A1
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80521
CACE272562 ncbi Clostridium acetobutylicum ATCC 8241
CABO218497 ncbi Chlamydophila abortus S26/30
BXEN266265 ncbi Burkholderia xenovorans LB4001
BTUR314724 ncbi Borrelia turicatae 91E1350
BTRI382640 ncbi Bartonella tribocorum CIP 1054760
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54820
BSUI470137 ncbi Brucella suis ATCC 234450
BSUI204722 ncbi Brucella suis 13300
BSUB ncbi Bacillus subtilis subtilis 1681
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)1
BQUI283165 ncbi Bartonella quintana Toulouse0
BOVI236 Brucella ovis0
BMEL359391 ncbi Brucella melitensis biovar Abortus 23080
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M0
BLON206672 ncbi Bifidobacterium longum NCC27050
BLIC279010 ncbi Bacillus licheniformis ATCC 145801
BHER314723 ncbi Borrelia hermsii DAH0
BHEN283166 ncbi Bartonella henselae Houston-10
BHAL272558 ncbi Bacillus halodurans C-1251
BGAR290434 ncbi Borrelia garinii PBi0
BFRA295405 ncbi Bacteroides fragilis YCH460
BFRA272559 ncbi Bacteroides fragilis NCTC 93430
BCIC186490 Candidatus Baumannia cicadellinicola0
BCAN483179 ncbi Brucella canis ATCC 233650
BBUR224326 ncbi Borrelia burgdorferi B310
BBAC360095 ncbi Bartonella bacilliformis KC5830
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)1
BAFZ390236 ncbi Borrelia afzelii PKo0
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9410
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP62977 ncbi Acinetobacter sp. ADP10
ASP232721 ncbi Acidovorax sp. JS420
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K10
AORE350688 ncbi Alkaliphilus oremlandii OhILAs0
AMET293826 ncbi Alkaliphilus metalliredigens QYMF0
AMAR329726 ncbi Acaryochloris marina MBIC110171
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43041
ACEL351607 ncbi Acidothermus cellulolyticus 11B0
AAVE397945 ncbi Acidovorax citrulli AAC00-10


Names of the homologs of the genes in the group in each of these orgs
  G7590   EG12210   EG11189   EG10838   
ZMOB264203
XORY360094 XOOORF_4290
XORY342109
XORY291331 XOO1056
XFAS405440
XFAS183190
XFAS160492
XCAM487884
XCAM316273
XCAM314565
XCAM190485
XAXO190486
WPIP955
WPIP80849
VEIS391735
UURE95667
UURE95664
UPAR505682
UMET351160 RCIX1448
TWHI218496
TWHI203267
TVOL273116 TVN1215
TTUR377629 TERTU_0700
TTHE300852 TTHA0591
TTHE262724 TT_C0222
TSP1755 TETH514_1088
TPSE340099 TETH39_0604
TPEN368408
TPAL243276
TMAR243274 TM_0509
TLET416591 TLET_1082
TELO197221 TLR1773
TDEN243275
SWOL335541 SWOL_1942
STOK273063
STHE322159
STHE299768
STHE264199
SSUI391296
SSUI391295
SSP84588
SSP64471
SSP644076 SCH4B_3378
SSP387093
SSP292414 TM1040_0016
SSP1148 SLR1067
SSP1131
SSOL273057
SRUB309807
SPYO370554
SPYO370553
SPYO370552
SPYO370551
SPYO319701
SPYO293653
SPYO286636
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SPNE488221
SPNE487214
SPNE487213
SPNE171101
SPNE170187
SPNE1313
SMUT210007
SMEL266834 SMB20942
SMED366394 SMED_4808
SMAR399550
SLAC55218 SL1157_1123
SHAE279808
SGOR29390
SEPI176280
SEPI176279
SDEG203122 SDE_1100
SAVE227882
SAUR93062 SACOL0113
SAUR93061 SAOUHSC_00088
SAUR426430 NWMN_0072
SAUR418127 SAHV_0127
SAUR367830 SAUSA300_0130
SAUR359787 SAURJH1_0119
SAUR359786 SAURJH9_0114
SAUR282459 SAS0102
SAUR282458 SAR0130
SAUR273036 SAB0067
SAUR196620 MW0102
SAUR158879 SA0123
SAUR158878 SAV0128
SALA317655
SAGA211110
SAGA208435
SAGA205921
SACI56780 SYN_01125
SACI330779
RTYP257363
RSPH349102 RSPH17025_0580
RSPH349101 RSPH17029_2305
RSPH272943 RSP_0652
RSP101510
RSAL288705
RRIC452659
RRIC392021
RPRO272947
RPOM246200
RMAS416276
RLEG216596 RL0078
RFEL315456
RETL347834 RHE_CH00069
RDEN375451
RCON272944
RCAN293613
RBEL391896
RBEL336407
RALB246199
RAKA293614
PTOR263820 PTO1010
PTHE370438 PTH_2767
PSP56811
PSP117 RB3751
PRUM264731 GFRORF0450
PMOB403833 PMOB_1064
PMAR93060
PMAR74547
PMAR74546
PMAR59920
PMAR167555
PMAR167546 P9301ORF_1438
PMAR167542
PMAR167540 PMM1218
PMAR167539 PRO_1322
PMAR146891 A9601_14421
PISL384616
PINT246198
PGIN242619
PDIS435591 BDI_0026
PCRY335284
PATL342610
PAST100379
PARS340102 PARS_0340
PARC259536
PAER178306
PACN267747
OTSU357244
OANT439375
NSP35761 NOCA_1691
NSEN222891
NPHA348780 NP4662A
NEUT335283
NEUR228410
NARO279238
MVAN350058
MTUB419947
MTUB336982
MTHE264732 MOTH_0673
MTHE187420 MTH380
MTBRV
MTBCDC
MSYN262723
MSTA339860 MSP_0067
MSP409
MSP266779
MSP189918
MSP164757
MSP164756
MSME246196
MSED399549 MSED_1736
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAR394221
MMAR368407 MEMAR_0700
MLEP272631
MLAB410358 MLAB_0910
MHYO295358
MHYO262722
MHYO262719
MGIL350054
MGEN243273
MFLO265311
MEXT419610
MCAP340047
MBUR259564 MBUR_2037
MBOV410289
MBOV233413
MBAR269797 MBAR_A1144
MART243272
MAER449447
MACE188937 MA1185
MABS561007
LXYL281090
LWEL386043 LWE2425
LSAK314315 LSA0765
LREU557436 LREU_0339
LPNE400673 LPC_0441
LMON265669
LMON169963
LMES203120
LLAC272623 L12335
LLAC272622
LJOH257314
LINN272626 LIN2620
LHEL405566
LGAS324831
LDEL390333
LDEL321956
LBRE387344 LVIS_1903
LACI272621
KRAD266940
JSP375286
JSP290400
ILOI283942
IHOS453591 IGNI_1040
HWAL362976 HQ2650A
HMUK485914 HMUK_2040
HMOD498761 HM1_1189
HMAR272569 PNG7014
HBUT415426 HBUT_1362
HARS204773
GFOR411154 GFO_2041
FTUL458234
FTUL418136 FTW_0416
FTUL401614 FTN_1425
FTUL393115 FTF1459C
FTUL393011
FTUL351581 FTL_0597
FSUC59374
FSP1855
FSP106370
FRANT WBTF
FPHI484022
FNOD381764 FNOD_0145
FMAG334413
FJOH376686 FJOH_0359
ERUM302409
ERUM254945
ELIT314225 ELI_10930
ECHA205920
ECAN269484
DSP255470
DSP216389
DSHI398580
DRED349161 DRED_2526
DRAD243230
DPSY177439
DOLE96561
DHAF138119
DGEO319795 DGEO_0358
DETH243164
CVES412965
CTRA471473
CTRA471472
CTET212717
CSUL444179
CSP501479 CSE45_3588
CRUT413404
CPSY167879
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPHY357809
CPER289380
CPER195103
CPER195102
CPEL335992 SAR11_0539
CNOV386415
CMUR243161
CMET456442
CKOR374847 KCR_0768
CKLU431943 CKL_2098
CJEI306537
CHYD246194 CHY_1057
CHOM360107
CGLU196627
CFEL264202
CEFF196164
CDIP257309
CDIF272563
CDES477974 DAUD_1657
CCAV227941
CBOT536232 CLM_3043
CBOT515621 CLJ_B2909
CBOT508765 CLL_A1708
CBOT498213 CLD_1886
CBOT441772 CLI_2744
CBOT441771 CLC_2552
CBOT441770 CLB_2620
CBOT36826 CBO2679
CBEI290402 CBEI_4420
CACE272562 CAC2334
CABO218497
BXEN266265 BXE_B0560
BTUR314724
BTRI382640
BTHE226186
BSUI470137
BSUI204722
BSUB BSU30870
BSP107806 BU060
BQUI283165
BOVI236
BMEL359391
BMEL224914
BLON206672
BLIC279010 BL03353
BHER314723
BHEN283166
BHAL272558 BH3379
BGAR290434
BFRA295405
BFRA272559
BCIC186490
BCAN483179
BBUR224326
BBAC360095
BAPH372461
BAPH198804 BUSG057
BAFZ390236
BABO262698
AYEL322098
AURANTIMONAS
ASP62977
ASP232721
APHA212042
APER272557
AORE350688
AMET293826
AMAR329726 AM1_5577
AMAR234826
ALAI441768
AFUL224325 AF_1418
ACEL351607
AAVE397945


Organism features enriched in list (features available for 310 out of the 337 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00103296292
Arrangment:Clusters 0.00027751617
Arrangment:Singles 0.0004406133286
Disease:Pharyngitis 0.006122788
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 0.00088291111
Disease:Wide_range_of_infections 0.00088291111
Disease:bronchitis_and_pneumonitis 0.006122788
Disease:gastroenteritis 0.0006880113
Endospores:No 0.0000140136211
GC_Content_Range4:0-40 7.642e-13154213
GC_Content_Range4:40-60 0.000014595224
GC_Content_Range4:60-100 0.000354860145
GC_Content_Range7:0-30 3.673e-84247
GC_Content_Range7:30-40 4.759e-6112166
GC_Content_Range7:50-60 0.000023338107
GC_Content_Range7:60-70 0.001534057134
Genome_Size_Range5:0-2 1.611e-12119155
Genome_Size_Range5:2-4 0.0046957118197
Genome_Size_Range5:4-6 7.143e-1260184
Genome_Size_Range5:6-10 0.00014601347
Genome_Size_Range9:0-1 7.257e-62527
Genome_Size_Range9:1-2 7.226e-894128
Genome_Size_Range9:2-3 0.001145578120
Genome_Size_Range9:4-5 0.00031273696
Genome_Size_Range9:5-6 6.610e-82488
Genome_Size_Range9:6-8 0.0001006938
Gram_Stain:Gram_Neg 1.525e-14132333
Gram_Stain:Gram_Pos 2.280e-11114150
Habitat:Host-associated 0.0000330132206
Habitat:Multiple 0.000808178178
Habitat:Terrestrial 0.0032417931
Motility:No 1.831e-10113151
Motility:Yes 1.442e-1693267
Optimal_temp.:30 0.0070661315
Optimal_temp.:30-37 9.101e-61818
Optimal_temp.:37 0.002087569106
Oxygen_Req:Anaerobic 0.000453469102
Oxygen_Req:Facultative 0.000170587201
Oxygen_Req:Microaerophilic 0.0000188118
Pathogenic_in:Animal 0.00322592566
Shape:Coccus 1.188e-96882
Shape:Rod 2.753e-6158347
Shape:Sphere 0.00069811719
Shape:Spiral 0.0002239834



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)1761620.7653
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181810.7554
PWY-1269 (CMP-KDO biosynthesis I)3251960.5750
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3001830.5447
GLYCOCAT-PWY (glycogen degradation I)2461610.5323
NAGLIPASYN-PWY (lipid IVA biosynthesis)3481970.5317
ECASYN-PWY (enterobacterial common antigen biosynthesis)1911370.5262
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2911750.5121
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2961760.5069
PWY-5913 (TCA cycle variation IV)3011770.5017
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2901720.4942
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251460.4866
LPSSYN-PWY (superpathway of lipopolysaccharide biosynthesis)91800.4684
GDPRHAMSYN-PWY (GDP-D-rhamnose biosynthesis)1561130.4660
PYRIDOXSYN-PWY (pyridoxal 5'-phosphate biosynthesis I)4222060.4468
REDCITCYC (TCA cycle variation II)1741180.4413
AST-PWY (arginine degradation II (AST pathway))120920.4374
DAPLYSINESYN-PWY (lysine biosynthesis I)3421800.4289
UBISYN-PWY (ubiquinol-8 biosynthesis (prokaryotic))3981960.4222
GLUTDEG-PWY (glutamate degradation II)1941240.4214
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951240.4184
KDOSYN-PWY (KDO transfer to lipid IVA I)1801170.4140
PWY-4041 (γ-glutamyl cycle)2791560.4125
GALACTITOLCAT-PWY (galactitol degradation)73640.4108
KDO-NAGLIPASYN-PWY (superpathway of KDO2-lipid A biosynthesis)1791160.4098
PWY-5669 (phosphatidylethanolamine biosynthesis I)4161990.4079
PWY-5938 ((R)-acetoin biosynthesis I)3761870.4043
P344-PWY (acrylonitrile degradation)2101280.4023



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG12210   EG11189   EG10838   
G75900.9990940.9990630.999487
EG122100.9997270.999398
EG111890.999251
EG10838



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PAIRWISE BLAST SCORES:

  G7590   EG12210   EG11189   EG10838   
G75900.0f0---
EG12210-0.0f02.7e-7-
EG11189-1.2e-60.0f0-
EG10838---0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- LIPA-CORESYN-PWY (Lipid A-core biosynthesis) (degree of match pw to cand: 0.200, degree of match cand to pw: 0.500, average score: 0.947)
  Genes in pathway or complex:
   *in cand* 0.9995 0.9991 EG11189 (waaC) EG11189-MONOMER (ADP-heptose:LPS heptosyl transferase I)
   *in cand* 0.9996 0.9991 EG12210 (waaF) EG12210-MONOMER (ADP-heptose:LPS heptosyltransferase II)
             0.9981 0.9966 EG11339 (waaG) EG11339-MONOMER (lipopolysaccharide glucosyltransferase I)
             0.9980 0.9968 EG11340 (waaP) EG11340-MONOMER (lipopolysaccharide core heptose (I) kinase)
             0.9990 0.9981 EG11341 (waaQ) EG11341-MONOMER (lipopolysaccharide core heptosyl transferase III)
             0.9221 0.7007 EG11425 (waaY) EG11425-MONOMER (lipopolysaccharide core heptose (II) kinase)
             0.8192 0.6216 EG11351 (waaB) EG11351-MONOMER (UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase)
             0.9559 0.8436 EG11352 (waaI) EG11352-MONOMER (UDP-D-glucose:(glucosyl)LPS α-1,3-glucosyltransferase)
             0.9685 0.8888 EG11353 (waaJ) EG11353-MONOMER (UDP-glucose:(glucosyl)LPS α-1,2-glucosyltransferase)
             0.8568 0.7634 EG11423 (waaK) EG11423-MONOMER (lipopolysaccharide core biosynthesis; heptosyl transferase IV; probably hexose transferase)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9995 0.9993 EG10838 (rfaD) EG10838-MONOMER (ADP-L-glycero-D-mannoheptose-6-epimerase)
   *in cand* 0.9994 0.9991 G7590 (rfaE) G7590-MONOMER (fused heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase)

- PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis) (degree of match pw to cand: 0.500, degree of match cand to pw: 0.500, average score: 0.999)
  Genes in pathway or complex:
   *in cand* 0.9994 0.9991 G7590 (rfaE) G7590-MONOMER (fused heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase)
             0.9985 0.9980 EG11736 (gmhB) EG11736-MONOMER (D,D-heptose 1,7-bisphosphate phosphatase)
   *in cand* 0.9995 0.9993 EG10838 (rfaD) EG10838-MONOMER (ADP-L-glycero-D-mannoheptose-6-epimerase)
             0.9982 0.9977 G6106 (lpcA) G6106-MONOMER (D-sedoheptulose 7-phosphate isomerase)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9995 0.9991 EG11189 (waaC) EG11189-MONOMER (ADP-heptose:LPS heptosyl transferase I)
   *in cand* 0.9996 0.9991 EG12210 (waaF) EG12210-MONOMER (ADP-heptose:LPS heptosyltransferase II)

- LPSSYN-PWY (superpathway of lipopolysaccharide biosynthesis) (degree of match pw to cand: 0.080, degree of match cand to pw: 0.500, average score: 0.607)
  Genes in pathway or complex:
             0.4010 0.1924 EG10545 (lpxA) UDPNACETYLGLUCOSAMACYLTRANS-MONOMER (LpxA)
             0.8994 0.8660 EG10265 (lpxC) UDPACYLGLCNACDEACETYL-MONOMER (UDP-3-O-acyl-N-acetylglucosamine deacetylase)
             0.4145 0.1931 EG10316 (lpxD) UDPHYDROXYMYRGLUCOSAMNACETYLTRANS-MONO (UDP-3-O-[3-hydroxymyristoyl]glucosamine N-acetyltransferase)
             0.0752 0.0324 EG12666 (lpxH) EG12666-MONOMER (UDP-2,3-diacylglucosamine hydrolase)
             0.4293 0.0882 EG11409 (lpxK) TETRAACYLDISACC4KIN-MONOMER (tetraacyldisaccharide 4'-kinase)
             0.5529 0.4897 EG10546 (lpxB) LIPIDADISACCHARIDESYNTH-MONOMER (LpxB)
             0.5398 0.1914 EG10973 (gutQ) EG10973-MONOMER (D-arabinose 5-phosphate isomerase)
             0.6449 0.2347 G7662 (kdsD) G7662-MONOMER (D-arabinose 5-phosphate isomerase)
             0.4969 0.3601 EG10518 (kdsA) KDO-8PSYNTH-MONOMER (3-deoxy-D-manno-octulosonate 8-phosphate synthase)
             0.7001 0.4967 G7663 (kdsC) G7663-MONOMER (3-deoxy-D-manno-octulosonate 8-phosphate phosphatase monomer)
             0.1056 0.0033 EG10519 (kdsB) CPM-KDOSYNTH-MONOMER (3-deoxy-D-manno-octulosonate cytidylyltransferase)
             0.9982 0.9965 EG10520 (waaA) KDOTRANS-MONOMER (KDO transferase)
             0.7704 0.5521 EG10614 (lpxM) MYRISTOYLACYLTRAN-MONOMER (myristoyl-acyl carrier protein (ACP)-dependent acyltransferase)
             0.8343 0.4038 EG10464 (lpxL) LAUROYLACYLTRAN-MONOMER (lauroyl acyltransferase)
             0.8568 0.7634 EG11423 (waaK) EG11423-MONOMER (lipopolysaccharide core biosynthesis; heptosyl transferase IV; probably hexose transferase)
             0.9685 0.8888 EG11353 (waaJ) EG11353-MONOMER (UDP-glucose:(glucosyl)LPS α-1,2-glucosyltransferase)
             0.9559 0.8436 EG11352 (waaI) EG11352-MONOMER (UDP-D-glucose:(glucosyl)LPS α-1,3-glucosyltransferase)
             0.8192 0.6216 EG11351 (waaB) EG11351-MONOMER (UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase)
             0.9221 0.7007 EG11425 (waaY) EG11425-MONOMER (lipopolysaccharide core heptose (II) kinase)
             0.9990 0.9981 EG11341 (waaQ) EG11341-MONOMER (lipopolysaccharide core heptosyl transferase III)
             0.9980 0.9968 EG11340 (waaP) EG11340-MONOMER (lipopolysaccharide core heptose (I) kinase)
             0.9981 0.9966 EG11339 (waaG) EG11339-MONOMER (lipopolysaccharide glucosyltransferase I)
   *in cand* 0.9996 0.9991 EG12210 (waaF) EG12210-MONOMER (ADP-heptose:LPS heptosyltransferase II)
   *in cand* 0.9995 0.9991 EG11189 (waaC) EG11189-MONOMER (ADP-heptose:LPS heptosyl transferase I)
             0.1256 0.0039 EG50003 (acpP) TRANS-DELTA3-CIS-DELTA5-DODECENOYL-ACP (trans-Δ3-cis-Δ5-dodecenoyl-ACP)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9995 0.9993 EG10838 (rfaD) EG10838-MONOMER (ADP-L-glycero-D-mannoheptose-6-epimerase)
   *in cand* 0.9994 0.9991 G7590 (rfaE) G7590-MONOMER (fused heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10838 EG11189 EG12210 (centered at EG12210)
G7590 (centered at G7590)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7590   EG12210   EG11189   EG10838   
294/623220/623217/623333/623
AAEO224324:0:Tyes30400141
AAUR290340:2:Tyes9021990
ABAC204669:0:Tyes09309302
ABAU360910:0:Tyes1235210901236
ABOR393595:0:Tyes0108-
ABUT367737:0:Tyes14260
ACAU438753:0:Tyes3012
ACRY349163:8:Tyes900-163
ADEH290397:0:Tyes033-
AEHR187272:0:Tyes1801417
AFER243159:0:Tyes540174016460
AFUL224325:0:Tyes0---
AHYD196024:0:Tyes359611804036
AMAR329726:9:Tyes---0
ANAE240017:0:Tyes275--0
APLE416269:0:Tyes0101710161344
APLE434271:0:Tno0100510041338
ASAL382245:5:Tyes4684033050
ASP1667:3:Tyes10803745
ASP62928:0:Tyes0231
ASP76114:2:Tyes3102
AVAR240292:3:Tyes0--801
BAMB339670:3:Tno16219580163
BAMB398577:3:Tno15017960151
BAMY326423:0:Tyes2094--0
BANT260799:0:Tno0--4495
BANT261594:2:Tno0--4462
BANT568206:2:Tyes0--1561
BANT592021:2:Tno0--4680
BAPH198804:0:Tyes0---
BBAC264462:0:Tyes0152615262610
BBRO257310:0:Tyes3331325903330
BCEN331271:2:Tno16616310167
BCEN331272:3:Tyes15817360159
BCER226900:1:Tyes0--4505
BCER288681:0:Tno0--4402
BCER315749:1:Tyes124--0
BCER405917:1:Tyes0--4401
BCER572264:1:Tno0--4595
BCLA66692:0:Tyes3083--0
BHAL272558:0:Tyes---0
BJAP224911:0:Fyes02-1
BLIC279010:0:Tyes---0
BMAL243160:1:Tno12301673122
BMAL320388:1:Tno193301311932
BMAL320389:1:Tyes17201982173
BPAR257311:0:Tno2820148702819
BPER257313:0:Tyes76719950768
BPET94624:0:Tyes049129531
BPSE272560:1:Tyes1727018891726
BPSE320372:1:Tno2079022412078
BPSE320373:1:Tno1969021631968
BPUM315750:0:Tyes56--0
BSP107806:2:Tyes0---
BSP36773:2:Tyes17320060174
BSP376:0:Tyes02-1
BSUB:0:Tyes---0
BTHA271848:1:Tno9680823969
BTHU281309:1:Tno0--4332
BTHU412694:1:Tno0--4001
BVIE269482:7:Tyes14519000146
BWEI315730:4:Tyes0--4412
BXEN266265:1:Tyes-0--
CACE272562:1:Tyes---0
CAULO:0:Tyes33070-1065
CBEI290402:0:Tyes---0
CBLO203907:0:Tyes0539540538
CBLO291272:0:Tno0555556554
CBOT36826:1:Tno---0
CBOT441770:0:Tyes---0
CBOT441771:0:Tno---0
CBOT441772:1:Tno---0
CBOT498213:1:Tno---0
CBOT508765:1:Tyes---0
CBOT515621:2:Tyes---0
CBOT536232:0:Tno---0
CBUR227377:1:Tyes79079611310
CBUR360115:1:Tno165416690978
CBUR434922:2:Tno601688528
CCHL340177:0:Tyes7170-996
CCON360104:2:Tyes03042951
CCUR360105:0:Tyes96709968
CDES477974:0:Tyes---0
CFET360106:0:Tyes1411015
CHUT269798:0:Tyes0-883588
CHYD246194:0:Tyes---0
CJAP155077:0:Tyes70834-
CJEJ192222:0:Tyes1614017
CJEJ195099:0:Tno118012
CJEJ354242:2:Tyes1613017
CJEJ360109:0:Tyes14110
CJEJ407148:0:Tno2319024
CKLU431943:1:Tyes---0
CKOR374847:0:Tyes---0
CMAQ397948:0:Tyes0--217
CMIC31964:2:Tyes1400-
CMIC443906:2:Tyes2800-
CPEL335992:0:Tyes0---
CPRO264201:0:Fyes160507071606
CSAL290398:0:Tyes9180
CSP501479:7:Fyes---0
CSP78:2:Tyes3786001735
CTEP194439:0:Tyes0956-87
CVIO243365:0:Tyes2879192202877
DARO159087:0:Tyes0202126541
DDES207559:0:Tyes0147416223492
DGEO319795:1:Tyes0---
DNOD246195:0:Tyes0767906-
DRED349161:0:Tyes0---
DVUL882:1:Tyes2864--0
ECAR218491:0:Tyes3472102
ECOL199310:0:Tno0637638636
ECOL316407:0:Tno0602601603
ECOL331111:6:Tno0593594592
ECOL362663:0:Tno0574575573
ECOL364106:1:Tno0670671669
ECOL405955:2:Tyes0540541539
ECOL409438:6:Tyes0581582580
ECOL413997:0:Tno0561562560
ECOL439855:4:Tno0599600598
ECOL469008:0:Tno586102
ECOL481805:0:Tno562102
ECOL585034:0:Tno0585586584
ECOL585035:0:Tno0576577575
ECOL585055:0:Tno0609610608
ECOL585056:2:Tno0600601599
ECOL585057:0:Tno0586587585
ECOL585397:0:Tno0570571569
ECOL83334:0:Tno0575576574
ECOLI:0:Tno0573574572
ECOO157:0:Tno0593594592
EFAE226185:3:Tyes752--0
EFER585054:1:Tyes0891892890
ELIT314225:0:Tyes---0
ESP42895:1:Tyes3377102
FALN326424:0:Tyes600-
FJOH376686:0:Tyes---0
FNOD381764:0:Tyes---0
FNUC190304:0:Tyes839729720
FRANT:0:Tno---0
FTUL351581:0:Tno---0
FTUL393115:0:Tyes---0
FTUL401614:0:Tyes---0
FTUL418136:0:Tno---0
GBET391165:0:Tyes1850-1205
GFOR411154:0:Tyes---0
GKAU235909:1:Tyes2430--0
GMET269799:1:Tyes0143214181416
GOXY290633:5:Tyes2020-313
GSUL243231:0:Tyes0171157-
GTHE420246:1:Tyes1082--0
GURA351605:0:Tyes0153-
GVIO251221:0:Tyes0476-181
HACI382638:1:Tyes6219370622
HAUR316274:2:Tyes0241424143273
HBUT415426:0:Tyes---0
HCHE349521:0:Tyes12013742
HDUC233412:0:Tyes64417501246
HHAL349124:0:Tyes1508--0
HHEP235279:0:Tyes5528290553
HINF281310:0:Tyes303006
HINF374930:0:Tyes0225225216
HINF71421:0:Tno4160-8
HMAR272569:7:Tyes---0
HMOD498761:0:Tyes---0
HMUK485914:1:Tyes---0
HNEP81032:0:Tyes13530--
HPY:0:Tno5829220583
HPYL357544:1:Tyes5658700566
HPYL85963:0:Tno5218440522
HSAL478009:4:Tyes1970--0
HSOM205914:1:Tyes0102910281030
HSOM228400:0:Tno542120
HSP64091:2:Tno1924--0
HWAL362976:1:Tyes---0
IHOS453591:0:Tyes0---
KPNE272620:2:Tyes0528529527
LBIF355278:2:Tyes6167590955
LBIF456481:2:Tno6367820976
LBOR355276:1:Tyes203512062
LBOR355277:1:Tno3730720230
LBRE387344:2:Tyes---0
LCAS321967:1:Tyes0--1657
LCHO395495:0:Tyes-80-
LINN272626:1:Tno---0
LINT189518:1:Tyes2395190153
LINT267671:1:Tno22200300
LINT363253:3:Tyes19577-0
LLAC272623:0:Tyes---0
LPLA220668:0:Tyes2047--0
LPNE272624:0:Tno-00-
LPNE297245:1:Fno-00-
LPNE297246:1:Fyes-00-
LPNE400673:0:Tno--0-
LREU557436:0:Tyes---0
LSAK314315:0:Tyes---0
LSPH444177:1:Tyes1993--0
LWEL386043:0:Tyes---0
MACE188937:0:Tyes---0
MAEO419665:0:Tyes2--0
MAQU351348:2:Tyes1403
MAVI243243:0:Tyes022-
MBAR269797:1:Tyes---0
MBUR259564:0:Tyes---0
MCAP243233:0:Tyes0940940690
MFLA265072:0:Tyes1615018
MHUN323259:0:Tyes274--0
MJAN243232:2:Tyes991--0
MKAN190192:0:Tyes0--151
MLAB410358:0:Tyes---0
MLOT266835:2:Tyes0342
MMAG342108:0:Tyes2500-68
MMAR267377:0:Tyes0--148
MMAR368407:0:Tyes---0
MMAR402880:1:Tyes252--0
MMAR426368:0:Tyes0--152
MMAR444158:0:Tyes136--0
MMAZ192952:0:Tyes0--937
MPET420662:1:Tyes01301516-
MSED399549:0:Tyes0---
MSP400668:0:Tyes1811181401813
MSTA339860:0:Tyes---0
MSUC221988:0:Tyes1156218321820
MTHE187420:0:Tyes---0
MTHE264732:0:Tyes---0
MTHE349307:0:Tyes0--266
MXAN246197:0:Tyes3-0-
NFAR247156:2:Tyes0852--
NGON242231:0:Tyes052614011
NHAM323097:2:Tyes5304
NMEN122586:0:Tno066612732
NMEN122587:0:Tyes74713900750
NMEN272831:0:Tno057911753
NMEN374833:0:Tno063913143
NMUL323848:3:Tyes980-
NOCE323261:1:Tyes20200162021
NPHA348780:2:Tyes---0
NSP103690:6:Tyes0--1085
NSP35761:1:Tyes0---
NSP387092:0:Tyes2-03
NWIN323098:0:Tyes5304
OCAR504832:0:Tyes5304
OIHE221109:0:Tyes500--0
PABY272844:0:Tyes1024--0
PAER208963:0:Tyes3701371737160
PAER208964:0:Tno1683169916980
PARS340102:0:Tyes---0
PCAR338963:0:Tyes1266124712480
PDIS435591:0:Tyes---0
PENT384676:0:Tyes0147146-
PFLU205922:0:Tyes1901-
PFLU216595:1:Tyes190120
PFLU220664:0:Tyes1901-
PFUR186497:0:Tyes0--692
PHAL326442:1:Tyes5-0-
PHOR70601:0:Tyes0--1057
PING357804:0:Tyes2856506
PLUM243265:0:Fyes0916917915
PLUT319225:0:Tyes0824-244
PMAR146891:0:Tyes0---
PMAR167539:0:Tyes0---
PMAR167540:0:Tyes0---
PMAR167546:0:Tyes---0
PMEN399739:0:Tyes1601-
PMOB403833:0:Tyes---0
PMUL272843:1:Tyes0960959458
PNAP365044:8:Tyes266709722668
PPEN278197:0:Tyes214--0
PPRO298386:2:Tyes240-011
PPUT160488:0:Tno457801-
PPUT351746:0:Tyes447701-
PPUT76869:0:Tno4672012283
PRUM264731:0:Tyes---0
PSP117:0:Tyes---0
PSP296591:2:Tyes1569014241568
PSP312153:0:Tyes24815830249
PSTU379731:0:Tyes2992301630150
PSYR205918:0:Tyes1701-
PSYR223283:2:Tyes4253427342720
PTHE370438:0:Tyes---0
PTOR263820:0:Tyes0---
RCAS383372:0:Tyes140--0
RETL347834:5:Tyes---0
REUT264198:3:Tyes203501992034
REUT381666:2:Tyes24202252243
RFER338969:1:Tyes1054024901053
RLEG216596:6:Tyes---0
RMET266264:2:Tyes23602211237
RPAL258594:0:Tyes0251
RPAL316055:0:Tyes4203
RPAL316056:0:Tyes4203
RPAL316057:0:Tyes5304
RPAL316058:0:Tyes5304
RRUB269796:1:Tyes0--3145
RSOL267608:1:Tyes3530127354
RSP357808:0:Tyes1518--0
RSPH272943:4:Tyes---0
RSPH349101:2:Tno---0
RSPH349102:5:Tyes---0
RXYL266117:0:Tyes1002392
SACI56780:0:Tyes---0
SARE391037:0:Tyes252702529-
SAUR158878:1:Tno---0
SAUR158879:1:Tno---0
SAUR196620:0:Tno---0
SAUR273036:0:Tno---0
SAUR282458:0:Tno---0
SAUR282459:0:Tno---0
SAUR359786:1:Tno---0
SAUR359787:1:Tno---0
SAUR367830:3:Tno---0
SAUR418127:0:Tyes---0
SAUR426430:0:Tno---0
SAUR93061:0:Fno---0
SAUR93062:1:Tno---0
SBAL399599:3:Tyes0-3618-
SBAL402882:1:Tno0-3491-
SBOY300268:1:Tyes0689690688
SCO:2:Fyes0-1-
SDEG203122:0:Tyes--0-
SDEN318161:0:Tyes029732973-
SDYS300267:1:Tyes0747748746
SELO269084:0:Tyes592--0
SENT209261:0:Tno0663662664
SENT220341:0:Tno0661660662
SENT295319:0:Tno0476477475
SENT321314:2:Tno0493494492
SENT454169:2:Tno0564565563
SERY405948:0:Tyes200-
SFLE198214:0:Tyes0549550548
SFLE373384:0:Tno0777776778
SFUM335543:0:Tyes3229202351
SGLO343509:3:Tyes0198219831981
SHAL458817:0:Tyes127401960-
SHIGELLA:0:Tno0744743745
SLAC55218:1:Fyes---0
SLOI323850:0:Tyes0-31313123
SMED366394:2:Tyes---0
SMEL266834:1:Tyes---0
SONE211586:1:Tyes0-920-
SPEA398579:0:Tno567-0-
SPRO399741:1:Tyes0550551549
SSAP342451:2:Tyes1497--0
SSED425104:0:Tyes3830-0-
SSON300269:1:Tyes0564563565
SSP1148:0:Tyes---0
SSP292414:2:Tyes---0
SSP321327:0:Tyes--01608
SSP321332:0:Tyes-16040-
SSP644076:6:Fyes---0
SSP94122:1:Tyes033333333-
STHE292459:0:Tyes0--1960
STRO369723:0:Tyes219802200-
STYP99287:1:Tyes0507508506
SWOL335541:0:Tyes---0
TACI273075:0:Tyes800--0
TCRU317025:0:Tyes0103610361037
TDEN292415:0:Tyes22211470223
TDEN326298:0:Tyes13100
TELO197221:0:Tyes0---
TERY203124:0:Tyes0--691
TFUS269800:0:Tyes131200-
TKOD69014:0:Tyes1309--0
TLET416591:0:Tyes---0
TMAR243274:0:Tyes---0
TPET390874:0:Tno1397--0
TPSE340099:0:Tyes---0
TROS309801:1:Tyes848001048
TSP1755:0:Tyes---0
TSP28240:0:Tyes0--126
TTEN273068:0:Tyes0--1638
TTHE262724:1:Tyes---0
TTHE300852:2:Tyes---0
TTUR377629:0:Tyes--0-
TVOL273116:0:Tyes0---
UMET351160:0:Tyes---0
VCHO:0:Tyes-11015
VCHO345073:1:Tno0558548562
VFIS312309:2:Tyes21734017
VPAR223926:1:Tyes2130-2
VVUL196600:2:Tyes28830032
VVUL216895:1:Tno0176194174
WSUC273121:0:Tyes170111100
XAUT78245:1:Tyes3012
XORY291331:0:Tno-0--
XORY360094:0:Tno-0--
YENT393305:1:Tyes3508102
YPES187410:5:Tno3481230
YPES214092:3:Tno574102
YPES349746:2:Tno223102
YPES360102:3:Tyes0352353351
YPES377628:2:Tno0333933403338
YPES386656:2:Tno0343034313429
YPSE273123:2:Tno3398102
YPSE349747:2:Tno488102



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