CANDIDATE ID: 913

CANDIDATE ID: 913

NUMBER OF GENES: 4
AVERAGE SCORE:    9.9937917e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    2.5000037e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- EG12210 (waaF) (b3620)
   Products of gene:
     - EG12210-MONOMER (ADP-heptose:LPS heptosyltransferase II)
       Reactions:
        heptosyl-KDO2-lipid A + ADP-L-glycero-beta-D-manno-heptose  ->  heptosyl2-KDO2-lipid A + ADP + H+
         In pathways
         LPSSYN-PWY (superpathway of lipopolysaccharide biosynthesis)
         LIPA-CORESYN-PWY (Lipid A-core biosynthesis)

- EG11341 (waaQ) (b3632)
   Products of gene:
     - EG11341-MONOMER (lipopolysaccharide core heptosyl transferase III)
       Reactions:
        glucosyl-heptosyl2-KDO2-lipid A-phosphate + ADP-L-glycero-beta-D-manno-heptose  ->  glucosyl-heptosyl3-KDO2-lipid A-phosphate + ADP + H+
         In pathways
         LPSSYN-PWY (superpathway of lipopolysaccharide biosynthesis)
         LIPA-CORESYN-PWY (Lipid A-core biosynthesis)

- EG11189 (waaC) (b3621)
   Products of gene:
     - EG11189-MONOMER (ADP-heptose:LPS heptosyl transferase I)
       Reactions:
        KDO2-lipid A + ADP-L-glycero-beta-D-manno-heptose + 2 H+  ->  heptosyl-KDO2-lipid A + ADP
         In pathways
         LPSSYN-PWY (superpathway of lipopolysaccharide biosynthesis)
         LIPA-CORESYN-PWY (Lipid A-core biosynthesis)
        alpha-KDO-(2->4)-alpha-KDO-(2->6)-lipid IVA + ADP-L-glycero-beta-D-manno-heptose  =  heptosyl-KDO2-lipid IVA + ADP + H+

- EG10838 (rfaD) (b3619)
   Products of gene:
     - EG10838-MONOMER (ADP-L-glycero-D-mannoheptose-6-epimerase)
     - CPLX0-3681 (ADP-L-glycero-D-mannoheptose-6-epimerase)
       Reactions:
        ADP-D-glycero-beta-D-manno-heptose  ->  ADP-L-glycero-beta-D-manno-heptose
         In pathways
         PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)



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ORGANISMS CONTAINING AT LEAST 3 GENES FROM THE GROUP:

Total number of orgs: 207
Effective number of orgs (counting one per cluster within 468 clusters): 144

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317584
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329534
YPES386656 ncbi Yersinia pestis Pestoides F4
YPES377628 ncbi Yersinia pestis Nepal5164
YPES360102 ncbi Yersinia pestis Antiqua4
YPES349746 ncbi Yersinia pestis Angola4
YPES214092 ncbi Yersinia pestis CO924
YPES187410 ncbi Yersinia pestis KIM 104
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80814
XAUT78245 ncbi Xanthobacter autotrophicus Py23
WSUC273121 ncbi Wolinella succinogenes DSM 17404
VVUL216895 ncbi Vibrio vulnificus CMCP64
VVUL196600 ncbi Vibrio vulnificus YJ0164
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106333
VFIS312309 ncbi Vibrio fischeri ES1144
VCHO345073 ncbi Vibrio cholerae O3954
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169614
TROS309801 ncbi Thermomicrobium roseum DSM 51594
TFUS269800 ncbi Thermobifida fusca YX3
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12514
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252594
TCRU317025 ncbi Thiomicrospira crunogena XCL-23
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT24
SSP94122 ncbi Shewanella sp. ANA-33
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)3
SSP321327 ncbi Synechococcus sp. JA-3-3Ab3
SSON300269 ncbi Shigella sonnei Ss0464
SPRO399741 ncbi Serratia proteamaculans 5684
SLOI323850 ncbi Shewanella loihica PV-43
SHIGELLA ncbi Shigella flexneri 2a str. 2457T4
SHAL458817 ncbi Shewanella halifaxensis HAW-EB43
SGLO343509 ncbi Sodalis glossinidius morsitans4
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB4
SFLE373384 ncbi Shigella flexneri 5 str. 84014
SFLE198214 ncbi Shigella flexneri 2a str. 3014
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23383
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4764
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B674
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91504
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT184
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty24
SDYS300267 ncbi Shigella dysenteriae Sd1974
SDEN318161 ncbi Shewanella denitrificans OS2173
SBOY300268 ncbi Shigella boydii Sb2274
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99414
RSOL267608 ncbi Ralstonia solanacearum GMI10003
RPAL316058 ncbi Rhodopseudomonas palustris HaA23
RPAL316057 ncbi Rhodopseudomonas palustris BisB53
RPAL316056 ncbi Rhodopseudomonas palustris BisB183
RPAL316055 ncbi Rhodopseudomonas palustris BisA534
RPAL258594 ncbi Rhodopseudomonas palustris CGA0093
RMET266264 ncbi Ralstonia metallidurans CH343
RFER338969 ncbi Rhodoferax ferrireducens T1183
REUT381666 ncbi Ralstonia eutropha H163
REUT264198 ncbi Ralstonia eutropha JMP1344
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30004
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a3
PSTU379731 ncbi Pseudomonas stutzeri A15014
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-14
PSP296591 ncbi Polaromonas sp. JS6663
PPUT76869 ncbi Pseudomonas putida GB-14
PPUT351746 ncbi Pseudomonas putida F13
PPUT160488 ncbi Pseudomonas putida KT24403
PPRO298386 ncbi Photobacterium profundum SS93
PNAP365044 ncbi Polaromonas naphthalenivorans CJ23
PMUL272843 ncbi Pasteurella multocida multocida Pm704
PMEN399739 ncbi Pseudomonas mendocina ymp3
PLUT319225 ncbi Chlorobium luteolum DSM 2733
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO14
PING357804 ncbi Psychromonas ingrahamii 374
PFLU220664 ncbi Pseudomonas fluorescens Pf-53
PFLU216595 ncbi Pseudomonas fluorescens SBW254
PFLU205922 ncbi Pseudomonas fluorescens Pf0-13
PENT384676 ncbi Pseudomonas entomophila L483
PCAR338963 ncbi Pelobacter carbinolicus DSM 23804
PAER208964 ncbi Pseudomonas aeruginosa PAO13
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA143
OCAR504832 ncbi Oligotropha carboxidovorans OM54
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2553
NOCE323261 ncbi Nitrosococcus oceani ATCC 197074
NMUL323848 ncbi Nitrosospira multiformis ATCC 251963
NMEN374833 ncbi Neisseria meningitidis 0534423
NMEN272831 ncbi Neisseria meningitidis FAM183
NMEN122587 ncbi Neisseria meningitidis Z24913
NMEN122586 ncbi Neisseria meningitidis MC583
NHAM323097 ncbi Nitrobacter hamburgensis X144
NGON242231 ncbi Neisseria gonorrhoeae FA 10903
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E4
MSP400668 ncbi Marinomonas sp. MWYL14
MPET420662 ncbi Methylibium petroleiphilum PM13
MLOT266835 ncbi Mesorhizobium loti MAFF3030994
MFLA265072 ncbi Methylobacillus flagellatus KT4
MCAP243233 ncbi Methylococcus capsulatus Bath4
MAVI243243 ncbi Mycobacterium avium 1043
MAQU351348 ncbi Marinobacter aquaeolei VT84
LPNE297246 ncbi Legionella pneumophila Paris3
LPNE297245 ncbi Legionella pneumophila Lens3
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 13
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-003
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1304
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566014
LCHO395495 ncbi Leptothrix cholodnii SP-63
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1974
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5504
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)4
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)4
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785784
HSOM228400 ncbi Haemophilus somnus 23364
HSOM205914 ncbi Haemophilus somnus 129PT4
HPYL85963 ncbi Helicobacter pylori J994
HPYL357544 ncbi Helicobacter pylori HPAG14
HPY ncbi Helicobacter pylori 266954
HINF71421 ncbi Haemophilus influenzae Rd KW203
HINF374930 ncbi Haemophilus influenzae PittEE4
HINF281310 ncbi Haemophilus influenzae 86-028NP4
HHEP235279 ncbi Helicobacter hepaticus ATCC 514493
HDUC233412 ncbi Haemophilus ducreyi 35000HP4
HCHE349521 ncbi Hahella chejuensis KCTC 23964
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237794
HACI382638 ncbi Helicobacter acinonychis Sheeba4
GVIO251221 ncbi Gloeobacter violaceus PCC 74213
GURA351605 ncbi Geobacter uraniireducens Rf43
GSUL243231 ncbi Geobacter sulfurreducens PCA3
GOXY290633 ncbi Gluconobacter oxydans 621H3
GMET269799 ncbi Geobacter metallireducens GS-154
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255864
FALN326424 ncbi Frankia alni ACN14a3
ESP42895 Enterobacter sp.4
EFER585054 ncbi Escherichia fergusonii ATCC 354694
ECOO157 ncbi Escherichia coli O157:H7 EDL9334
ECOL83334 Escherichia coli O157:H74
ECOL585397 ncbi Escherichia coli ED1a4
ECOL585057 ncbi Escherichia coli IAI394
ECOL585056 ncbi Escherichia coli UMN0264
ECOL585055 ncbi Escherichia coli 559894
ECOL585035 ncbi Escherichia coli S884
ECOL585034 ncbi Escherichia coli IAI14
ECOL481805 ncbi Escherichia coli ATCC 87394
ECOL469008 ncbi Escherichia coli BL21(DE3)4
ECOL439855 ncbi Escherichia coli SMS-3-54
ECOL413997 ncbi Escherichia coli B str. REL6064
ECOL409438 ncbi Escherichia coli SE114
ECOL405955 ncbi Escherichia coli APEC O14
ECOL364106 ncbi Escherichia coli UTI894
ECOL362663 ncbi Escherichia coli 5364
ECOL331111 ncbi Escherichia coli E24377A4
ECOL316407 ncbi Escherichia coli K-12 substr. W31104
ECOL199310 ncbi Escherichia coli CFT0734
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10434
DNOD246195 ncbi Dichelobacter nodosus VCS1703A3
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G204
DARO159087 ncbi Dechloromonas aromatica RCB4
CVIO243365 ncbi Chromobacterium violaceum ATCC 124724
CTEP194439 ncbi Chlorobium tepidum TLS3
CSP78 Caulobacter sp.4
CSAL290398 ncbi Chromohalobacter salexigens DSM 30434
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE254
CJEJ407148 ncbi Campylobacter jejuni jejuni 811163
CJEJ360109 ncbi Campylobacter jejuni doylei 269.973
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1763
CJEJ195099 ncbi Campylobacter jejuni RM12213
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111684
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334063
CFET360106 ncbi Campylobacter fetus fetus 82-404
CCUR360105 ncbi Campylobacter curvus 525.924
CCON360104 ncbi Campylobacter concisus 138264
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1114
CBUR360115 ncbi Coxiella burnetii RSA 3314
CBUR227377 ncbi Coxiella burnetii RSA 4934
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN3
CBLO203907 ncbi Candidatus Blochmannia floridanus3
CAULO ncbi Caulobacter crescentus CB153
BVIE269482 ncbi Burkholderia vietnamiensis G44
BTHA271848 ncbi Burkholderia thailandensis E2644
BSP36773 Burkholderia sp.4
BPSE320373 ncbi Burkholderia pseudomallei 6684
BPSE320372 ncbi Burkholderia pseudomallei 1710b4
BPSE272560 ncbi Burkholderia pseudomallei K962434
BPET94624 Bordetella petrii4
BPER257313 ncbi Bordetella pertussis Tohama I3
BPAR257311 ncbi Bordetella parapertussis 128223
BMAL320389 ncbi Burkholderia mallei NCTC 102474
BMAL320388 ncbi Burkholderia mallei SAVP14
BMAL243160 ncbi Burkholderia mallei ATCC 233444
BCEN331272 ncbi Burkholderia cenocepacia HI24244
BCEN331271 ncbi Burkholderia cenocepacia AU 10544
BBRO257310 ncbi Bordetella bronchiseptica RB503
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1004
BAMB398577 ncbi Burkholderia ambifaria MC40-64
BAMB339670 ncbi Burkholderia ambifaria AMMD4
ASP76114 ncbi Aromatoleum aromaticum EbN14
ASP62928 ncbi Azoarcus sp. BH724
ASP1667 Arthrobacter sp.3
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4494
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL034
APLE416269 ncbi Actinobacillus pleuropneumoniae L204
AHYD196024 Aeromonas hydrophila dhakensis4
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232703
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-14
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C3
ACAU438753 ncbi Azorhizobium caulinodans ORS 5713
ABUT367737 ncbi Arcobacter butzleri RM40184
ABOR393595 ncbi Alcanivorax borkumensis SK23
ABAU360910 ncbi Bordetella avium 197N3
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3454
AAUR290340 ncbi Arthrobacter aurescens TC13
AAEO224324 ncbi Aquifex aeolicus VF54


Names of the homologs of the genes in the group in each of these orgs
  EG12210   EG11341   EG11189   EG10838   
YPSE349747 YPSIP31758_0069YPSIP31758_3516YPSIP31758_0068YPSIP31758_0070
YPSE273123 YPTB0054YPTB0555YPTB0053YPTB0055
YPES386656 YPDSF_3848YPDSF_3215YPDSF_3849YPDSF_3847
YPES377628 YPN_3793YPN_0287YPN_3794YPN_3792
YPES360102 YPA_3485YPA_3868YPA_3486YPA_3484
YPES349746 YPANGOLA_A0063YPANGOLA_A0852YPANGOLA_A0062YPANGOLA_A0064
YPES214092 YPO0057YPO0416YPO0056YPO0058
YPES187410 Y0084Y3763Y0085Y0083
YENT393305 YE0071YE0531YE0070YE0072
XAUT78245 XAUT_3770XAUT_3771XAUT_3772
WSUC273121 WS1450WS1906WS1909WS0679
VVUL216895 VV1_0798VV1_0816VV1_0816VV1_0796
VVUL196600 VV0325VV0295VV0295VV0327
VPAR223926 VP0212VP0194VP0214
VFIS312309 VF0139VF0135VF0135VF0152
VCHO345073 VC0395_A2616VC0395_A2606VC0395_A2606VC0395_A2620
VCHO VC0236VC0225VC0225VC0240
TROS309801 TRD_0660TRD_0659TRD_0660TRD_1747
TFUS269800 TFU_0894TFU_0894TFU_0894
TDEN326298 TMDEN_0582TMDEN_0589TMDEN_0589TMDEN_0579
TDEN292415 TBD_1870TBD_0742TBD_0742TBD_0963
TCRU317025 TCR_1516TCR_1516TCR_1517
STYP99287 STM3711STM3723STM3712STM3710
SSP94122 SHEWANA3_4100SHEWANA3_4100SHEWANA3_4100
SSP321332 CYB_1980CYB_0460CYB_0336
SSP321327 CYA_2267CYA_0990CYA_2679
SSON300269 SSO_3785SSO_3775SSO_3784SSO_3786
SPRO399741 SPRO_4826SPRO_4832SPRO_4827SPRO_4825
SLOI323850 SHEW_3702SHEW_3702SHEW_3694
SHIGELLA RFAFWAAQRFACRFAD
SHAL458817 SHAL_2293SHAL_4211SHAL_4211
SGLO343509 SG2194SG2201SG2195SG2193
SFUM335543 SFUM_0377SFUM_0370SFUM_0375SFUM_2748
SFLE373384 SFV_3908SFV_3899SFV_3907SFV_3909
SFLE198214 AAN45107.1AAN45116.1AAN45108.1AAN45106.1
SERY405948 SACE_5567SACE_5567SACE_5567
SENT454169 SEHA_C4036SEHA_C4048SEHA_C4037SEHA_C4035
SENT321314 SCH_3634SCH_3646SCH_3635SCH_3633
SENT295319 SPA3563SPA3575SPA3564SPA3562
SENT220341 STY4084STY4071STY4083STY4085
SENT209261 T3808T3795T3807T3809
SDYS300267 SDY_4052SDY_4062SDY_4053SDY_4051
SDEN318161 SDEN_3611SDEN_3611SDEN_3611
SBOY300268 SBO_3625SBO_3634SBO_3626SBO_3624
RXYL266117 RXYL_0710RXYL_0715RXYL_0710RXYL_3113
RSOL267608 RSC0565RSC0692RSC0915
RPAL316058 RPB_1601RPB_1598RPB_1602
RPAL316057 RPD_1613RPD_1610RPD_1614
RPAL316056 RPC_1430RPC_1428RPC_1431
RPAL316055 RPE_1451RPE_1449RPE_1449RPE_1452
RPAL258594 RPA3986RPA3989RPA3985
RMET266264 RMET_0491RMET_2715RMET_0728
RFER338969 RFER_0508RFER_2998RFER_1561
REUT381666 H16_A0559H16_A2884H16_A0804
REUT264198 REUT_A0545REUT_B4383REUT_A0746REUT_A2563
PSYR223283 PSPTO_5003PSPTO_5003PSPTO_5002PSPTO_0678
PSYR205918 PSYR_0520PSYR_0520PSYR_0521
PSTU379731 PST_3849PST_3849PST_3848PST_0816
PSP312153 PNUC_1820PNUC_0607PNUC_0257PNUC_0505
PSP296591 BPRO_0205BPRO_1640BPRO_1784
PPUT76869 PPUTGB1_0369PPUTGB1_0369PPUTGB1_0370PPUTGB1_2609
PPUT351746 PPUT_0366PPUT_0366PPUT_0367
PPUT160488 PP_0341PP_0341PP_0342
PPRO298386 PBPRA0209PBPRA0209PBPRA0220
PNAP365044 PNAP_0149PNAP_1109PNAP_2801
PMUL272843 PM1844PM1302PM1843PM1342
PMEN399739 PMEN_0579PMEN_0579PMEN_0580
PLUT319225 PLUT_1796PLUT_1800PLUT_1208
PLUM243265 PLU4848PLU4853PLU4849PLU4847
PING357804 PING_0334PING_0329PING_0329PING_0335
PFLU220664 PFL_0511PFL_0511PFL_0512
PFLU216595 PFLU0462PFLU0462PFLU0463PFLU0483
PFLU205922 PFL_0465PFL_0465PFL_0466
PENT384676 PSEEN5143PSEEN5142PSEEN5142
PCAR338963 PCAR_1263PCAR_1263PCAR_1264PCAR_0024
PAER208964 PA5012PA5011PA3337
PAER208963 PA14_66250PA14_66240PA14_20890
OCAR504832 OCAR_5333OCAR_5883OCAR_5330OCAR_5334
NWIN323098 NWI_1069NWI_1066NWI_1070
NOCE323261 NOC_0561NOC_0578NOC_0578NOC_2614
NMUL323848 NMUL_A1791NMUL_A1783NMUL_A1783
NMEN374833 NMCC_1433NMCC_2115NMCC_0789
NMEN272831 NMC1456NMC2134NMC0773
NMEN122587 NMA1727NMA0243NMA1037
NMEN122586 NMB_1527NMB_2156NMB_0828
NHAM323097 NHAM_1297NHAM_1297NHAM_1294NHAM_1298
NGON242231 NGO0987NGO1934NGO0403
MSUC221988 MS2260MS1962MS2259MS0146
MSP400668 MMWYL1_3478MMWYL1_1695MMWYL1_1695MMWYL1_3477
MPET420662 MPE_A3550MPE_A2764MPE_A2764
MLOT266835 MLR2566MLR2566MLR2567MLR2565
MFLA265072 MFLA_0768MFLA_0753MFLA_0753MFLA_0771
MCAP243233 MCA_2713MCA_2713MCA_2713MCA_2451
MAVI243243 MAV_4091MAV_4091MAV_4091
MAQU351348 MAQU_0789MAQU_0785MAQU_0785MAQU_0788
LPNE297246 LPP2749LPP2749LPP2749
LPNE297245 LPL2622LPL2622LPL2622
LPNE272624 LPG2695LPG2695LPG2695
LINT363253 LI0698LI0092LI0621
LINT267671 LIC_11312LIC_11312LIC_11312LIC_11616
LINT189518 LA2688LA2688LA2173LA2326
LCHO395495 LCHO_0976LCHO_0976LCHO_0968
LBOR355277 LBJ_1021LBJ_1021LBJ_1845LBJ_1298
LBOR355276 LBL_2013LBL_2013LBL_1439LBL_1523
LBIF456481 LEPBI_I1789LEPBI_I1789LEPBI_I1003LEPBI_I1982
LBIF355278 LBF_1736LBF_1736LBF_0971LBF_1932
KPNE272620 GKPORF_B3325GKPORF_B3331GKPORF_B3326GKPORF_B3324
HSOM228400 HSM_0398HSM_0398HSM_0399HSM_0397
HSOM205914 HS_1612HS_1612HS_1611HS_1613
HPYL85963 JHP1116JHP0264JHP0264JHP0793
HPYL357544 HPAG1_1132HPAG1_0281HPAG1_0281HPAG1_0842
HPY HP1191HP0279HP0279HP0859
HINF71421 HI_1105HI_0261HI_1114
HINF374930 CGSHIEE_06535CGSHIEE_06535CGSHIEE_06535CGSHIEE_06480
HINF281310 NTHI1272NTHI0368NTHI1272NTHI1278
HHEP235279 HH_1808HH_0983HH_1533
HDUC233412 HD_0653HD_0445HD_0445HD_1890
HCHE349521 HCH_01046HCH_01054HCH_01047HCH_04939
HAUR316274 HAUR_3431HAUR_3431HAUR_3431HAUR_4278
HACI382638 HAC_1567HAC_0537HAC_0537HAC_1222
GVIO251221 GLL3112GLL3112GLR2820
GURA351605 GURA_3226GURA_3215GURA_3214
GSUL243231 GSU_2256GSU_2252GSU_2242
GOXY290633 GOX0821GOX1962GOX1134
GMET269799 GMET_2345GMET_2345GMET_2331GMET_2329
FNUC190304 FN0546FN0546FN0546FN1703
FALN326424 FRAAL3929FRAAL3929FRAAL3929
ESP42895 ENT638_0116ENT638_0114ENT638_0115ENT638_0117
EFER585054 EFER_3909EFER_3923EFER_3910EFER_3908
ECOO157 RFAFWAAQRFACRFAD
ECOL83334 ECS4498ECS4507ECS4499ECS4497
ECOL585397 ECED1_4306ECED1_4315ECED1_4307ECED1_4305
ECOL585057 ECIAI39_4140ECIAI39_4150ECIAI39_4141ECIAI39_4139
ECOL585056 ECUMN_4137ECUMN_4146ECUMN_4138ECUMN_4136
ECOL585055 EC55989_4087EC55989_4096EC55989_4088EC55989_4086
ECOL585035 ECS88_4036ECS88_4046ECS88_4037ECS88_4035
ECOL585034 ECIAI1_3792ECIAI1_3802ECIAI1_3793ECIAI1_3791
ECOL481805 ECOLC_0089ECOLC_0079ECOLC_0088ECOLC_0090
ECOL469008 ECBD_0106ECBD_0094ECBD_0105ECBD_0107
ECOL439855 ECSMS35_3957ECSMS35_3967ECSMS35_3958ECSMS35_3956
ECOL413997 ECB_03477ECB_03489ECB_03478ECB_03476
ECOL409438 ECSE_3903ECSE_3912ECSE_3904ECSE_3902
ECOL405955 APECO1_2836APECO1_2826APECO1_2835APECO1_2837
ECOL364106 UTI89_C4165UTI89_C4175UTI89_C4166UTI89_C4164
ECOL362663 ECP_3720ECP_3730ECP_3721ECP_3719
ECOL331111 ECE24377A_4123ECE24377A_4133ECE24377A_4124ECE24377A_4122
ECOL316407 ECK3610:JW3595:B3620ECK3622:JW3607:B3632ECK3611:JW3596:B3621ECK3609:JW3594:B3619
ECOL199310 C4446C4456C4447C4445
ECAR218491 ECA0164ECA0160ECA0163ECA0165
DNOD246195 DNO_0888DNO_0888DNO_1031
DDES207559 DDE_1482DDE_1482DDE_1629DDE_3466
DARO159087 DARO_3296DARO_0152DARO_3928DARO_1286
CVIO243365 CV_2092CV_0822CV_0226CV_3038
CTEP194439 CT_2137CT_2137CT_1258
CSP78 CAUL_1197CAUL_1197CAUL_1197CAUL_2918
CSAL290398 CSAL_0009CSAL_0016CSAL_0016CSAL_0008
CPRO264201 PC0017PC0017PC0707PC1588
CJEJ407148 C8J_1092C8J_1073C8J_1097
CJEJ360109 JJD26997_0580JJD26997_0588JJD26997_0577
CJEJ354242 CJJ81176_1164CJJ81176_1150CJJ81176_1168
CJEJ195099 CJE_1283CJE_1275CJE_1287
CJEJ192222 CJ1148CJ1133CJ1133CJ1151C
CHUT269798 CHU_1683CHU_1683CHU_1387
CFET360106 CFF8240_1411CFF8240_1403CFF8240_1399CFF8240_1414
CCUR360105 CCV52592_1237CCV52592_1231CCV52592_1228CCV52592_0243
CCON360104 CCC13826_0479CCC13826_0473CCC13826_0470CCC13826_0576
CBUR434922 COXBU7E912_0337COXBU7E912_2105COXBU7E912_2105COXBU7E912_0894
CBUR360115 COXBURSA331_A1852COXBURSA331_A0081COXBURSA331_A0081COXBURSA331_A1121
CBUR227377 CBU_1661CBU_2004CBU_2004CBU_0829
CBLO291272 BPEN_631BPEN_632BPEN_630
CBLO203907 BFL608BFL609BFL607
CAULO CC0386CC0386CC1430
BVIE269482 BCEP1808_2748BCEP1808_2400BCEP1808_0827BCEP1808_0974
BTHA271848 BTH_I0658BTH_I0990BTH_I1490BTH_I1644
BSP36773 BCEP18194_A5964BCEP18194_A5653BCEP18194_A4000BCEP18194_A4166
BPSE320373 BURPS668_0828BURPS668_1203BURPS668_3082BURPS668_2876
BPSE320372 BURPS1710B_A1043BURPS1710B_A1434BURPS1710B_A3405BURPS1710B_A3235
BPSE272560 BPSL0791BPSL1123BPSL2665BPSL2509
BPET94624 BPET2385BPET2388BPET4813BPET1895
BPER257313 BP2322BP0094BP0955
BPAR257311 BPP1717BPP0156BPP3123
BMAL320389 BMA10247_0032BMA10247_0333BMA10247_2063BMA10247_0208
BMAL320388 BMASAVP1_A0586BMASAVP1_A1050BMASAVP1_A0717BMASAVP1_A2565
BMAL243160 BMA_0291BMA_1907BMA_2190BMA_0421
BCEN331272 BCEN2424_2633BCEN2424_2311BCEN2424_0894BCEN2424_1053
BCEN331271 BCEN_2022BCEN_1699BCEN_0415BCEN_0574
BBRO257310 BB3391BB0156BB3462
BBAC264462 BD2366BD1504BD2366BD3536
BAMB398577 BAMMC406_2553BAMMC406_2230BAMMC406_0784BAMMC406_0933
BAMB339670 BAMB_2680BAMB_2350BAMB_0773BAMB_0929
ASP76114 EBA3998EBA6912EBA3997EBA3999
ASP62928 AZO3565AZO1806AZO3566AZO3564
ASP1667 ARTH_0359ARTH_0351ARTH_4059
ASAL382245 ASA_4220ASA_0037ASA_0037ASA_0093
APLE434271 APJL_1428APJL_0187APJL_1427APJL_1742
APLE416269 APL_1403APL_0186APL_1402APL_1710
AHYD196024 AHA_0169AHA_0042AHA_0042AHA_4232
AFER243159 AFE_2887AFE_2793AFE_1125
AEHR187272 MLG_2792MLG_2806MLG_2806MLG_2809
ADEH290397 ADEH_2614ADEH_3562ADEH_2614
ACAU438753 AZC_2251AZC_2252AZC_2253
ABUT367737 ABU_1800ABU_1800ABU_1822ABU_1796
ABOR393595 ABO_2300ABO_2215ABO_2298
ABAU360910 BAV2230BAV0125BAV1359
ABAC204669 ACID345_4721ACID345_4721ACID345_4721ACID345_3812
AAUR290340 AAUR_0110AAUR_0112AAUR_2151
AAEO224324 AQ_145AQ_145AQ_145AQ_344


Organism features enriched in list (features available for 200 out of the 207 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00037661892
Arrangment:Singles 5.452e-6123286
Disease:Bubonic_plague 0.001550666
Disease:Dysentery 0.001550666
Disease:Gastroenteritis 0.00001851213
Endospores:No 7.077e-649211
Endospores:Yes 2.828e-7353
GC_Content_Range4:0-40 1.917e-1334213
GC_Content_Range4:40-60 0.0000141100224
GC_Content_Range4:60-100 0.000416466145
GC_Content_Range7:0-30 0.0000198447
GC_Content_Range7:30-40 4.323e-830166
GC_Content_Range7:50-60 4.900e-963107
GC_Content_Range7:60-70 0.000377462134
Genome_Size_Range5:0-2 1.790e-1121155
Genome_Size_Range5:2-4 0.003119754197
Genome_Size_Range5:4-6 6.265e-1198184
Genome_Size_Range5:6-10 0.00040272747
Genome_Size_Range9:0-1 0.0009332227
Genome_Size_Range9:1-2 2.400e-819128
Genome_Size_Range9:2-3 0.007585431120
Genome_Size_Range9:4-5 2.251e-65396
Genome_Size_Range9:5-6 0.00018484588
Genome_Size_Range9:6-8 0.00003252538
Gram_Stain:Gram_Neg 2.482e-33179333
Gram_Stain:Gram_Pos 5.183e-246150
Habitat:Aquatic 0.00796132291
Habitat:Multiple 0.000477378178
Motility:No 8.531e-1121151
Motility:Yes 8.794e-10126267
Optimal_temp.:28-30 0.000521377
Optimal_temp.:30 0.00770921015
Optimal_temp.:35-37 7.002e-71313
Oxygen_Req:Anaerobic 5.900e-813102
Oxygen_Req:Facultative 5.065e-693201
Oxygen_Req:Microaerophilic 0.00014361418
Pathogenic_in:Animal 0.00043023566
Pathogenic_in:No 0.001456262226
Shape:Coccus 8.853e-71082
Shape:Rod 3.132e-6144347
Shape:Spiral 0.00003592334
Temp._range:Hyperthermophilic 0.0006408123
Temp._range:Mesophilic 0.0001386178473



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 380
Effective number of orgs (counting one per cluster within 468 clusters): 294

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM40
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110181
XFAS405440 ncbi Xylella fastidiosa M121
XFAS183190 ncbi Xylella fastidiosa Temecula11
XFAS160492 ncbi Xylella fastidiosa 9a5c1
XCAM487884 Xanthomonas campestris pv. paulliniae1
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-101
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80041
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339131
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3061
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
VEIS391735 ncbi Verminephrobacter eiseniae EF01-20
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I1
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTHE300852 ncbi Thermus thermophilus HB81
TTHE262724 ncbi Thermus thermophilus HB271
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB41
TSP28240 Thermotoga sp.1
TSP1755 Thermoanaerobacter sp.1
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332231
TPET390874 ncbi Thermotoga petrophila RKU-11
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TMAR243274 ncbi Thermotoga maritima MSB81
TLET416591 ncbi Thermotoga lettingae TMO1
TKOD69014 ncbi Thermococcus kodakarensis KOD11
TELO197221 ncbi Thermosynechococcus elongatus BP-11
TDEN243275 ncbi Treponema denticola ATCC 354050
TACI273075 ncbi Thermoplasma acidophilum DSM 17281
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen1
STOK273063 ncbi Sulfolobus tokodaii 70
STHE322159 ncbi Streptococcus thermophilus LMD-90
STHE299768 ncbi Streptococcus thermophilus CNRZ10660
STHE292459 ncbi Symbiobacterium thermophilum IAM 148631
STHE264199 ncbi Streptococcus thermophilus LMG 183110
SSUI391296 ncbi Streptococcus suis 98HAH330
SSUI391295 ncbi Streptococcus suis 05ZYH330
SSP84588 ncbi Synechococcus sp. WH 81020
SSP64471 ncbi Synechococcus sp. CC93110
SSP644076 Silicibacter sp. TrichCH4B1
SSP387093 ncbi Sulfurovum sp. NBC37-10
SSP292414 ncbi Ruegeria sp. TM10401
SSP1148 ncbi Synechocystis sp. PCC 68031
SSP1131 Synechococcus sp. CC96050
SSOL273057 ncbi Sulfolobus solfataricus P20
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153051
SRUB309807 ncbi Salinibacter ruber DSM 138550
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370552 ncbi Streptococcus pyogenes MGAS102700
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103940
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SPNE488221 ncbi Streptococcus pneumoniae 705850
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-60
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-140
SPNE171101 ncbi Streptococcus pneumoniae R60
SPNE170187 ncbi Streptococcus pneumoniae G540
SPNE1313 Streptococcus pneumoniae0
SMUT210007 ncbi Streptococcus mutans UA1590
SMEL266834 ncbi Sinorhizobium meliloti 10211
SMED366394 ncbi Sinorhizobium medicae WSM4191
SMAR399550 ncbi Staphylothermus marinus F10
SLAC55218 Ruegeria lacuscaerulensis1
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14350
SGOR29390 Streptococcus gordonii Challis0
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122280
SEPI176279 ncbi Staphylococcus epidermidis RP62A0
SELO269084 ncbi Synechococcus elongatus PCC 63011
SAVE227882 ncbi Streptomyces avermitilis MA-46800
SAUR93062 ncbi Staphylococcus aureus aureus COL1
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83251
SAUR426430 ncbi Staphylococcus aureus aureus Newman1
SAUR418127 ncbi Staphylococcus aureus aureus Mu31
SAUR367830 Staphylococcus aureus aureus USA3001
SAUR359787 ncbi Staphylococcus aureus aureus JH11
SAUR359786 ncbi Staphylococcus aureus aureus JH91
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4761
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2521
SAUR273036 ncbi Staphylococcus aureus RF1221
SAUR196620 ncbi Staphylococcus aureus aureus MW21
SAUR158879 ncbi Staphylococcus aureus aureus N3151
SAUR158878 ncbi Staphylococcus aureus aureus Mu501
SALA317655 ncbi Sphingopyxis alaskensis RB22560
SAGA211110 ncbi Streptococcus agalactiae NEM3160
SAGA208435 ncbi Streptococcus agalactiae 2603V/R0
SAGA205921 ncbi Streptococcus agalactiae A9090
SACI56780 ncbi Syntrophus aciditrophicus SB1
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RTYP257363 ncbi Rickettsia typhi Wilmington0
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170251
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170291
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.11
RSP357808 ncbi Roseiflexus sp. RS-11
RSP101510 ncbi Rhodococcus jostii RHA10
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332090
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111701
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RPOM246200 ncbi Ruegeria pomeroyi DSS-30
RMAS416276 ncbi Rickettsia massiliae MTU50
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38411
RFEL315456 ncbi Rickettsia felis URRWXCal20
RETL347834 ncbi Rhizobium etli CFN 421
RDEN375451 ncbi Roseobacter denitrificans OCh 1140
RCON272944 ncbi Rickettsia conorii Malish 70
RCAS383372 ncbi Roseiflexus castenholzii DSM 139411
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RALB246199 Ruminococcus albus 80
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97900
PTHE370438 ncbi Pelotomaculum thermopropionicum SI1
PSP56811 Psychrobacter sp.0
PSP117 Pirellula sp.1
PRUM264731 ncbi Prevotella ruminicola 231
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257451
PMOB403833 ncbi Petrotoga mobilis SJ951
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74547 ncbi Prochlorococcus marinus MIT 93130
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR59920 ncbi Prochlorococcus marinus NATL2A0
PMAR167555 ncbi Prochlorococcus marinus NATL1A0
PMAR167546 ncbi Prochlorococcus marinus MIT 93011
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13750
PMAR146891 ncbi Prochlorococcus marinus AS96010
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 170
PHOR70601 ncbi Pyrococcus horikoshii OT31
PGIN242619 ncbi Porphyromonas gingivalis W830
PFUR186497 ncbi Pyrococcus furiosus DSM 36381
PCRY335284 ncbi Psychrobacter cryohalolentis K50
PATL342610 ncbi Pseudoalteromonas atlantica T6c0
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135141
PARC259536 ncbi Psychrobacter arcticus 273-40
PAER178306 ncbi Pyrobaculum aerophilum IM20
PACN267747 ncbi Propionibacterium acnes KPA1712020
PABY272844 ncbi Pyrococcus abyssi GE51
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
OIHE221109 ncbi Oceanobacillus iheyensis HTE8311
OANT439375 ncbi Ochrobactrum anthropi ATCC 491880
NSP35761 Nocardioides sp.0
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21601
NEUT335283 ncbi Nitrosomonas eutropha C910
NEUR228410 ncbi Nitrosomonas europaea ATCC 197180
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124440
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-10
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra0
MTUB336982 ncbi Mycobacterium tuberculosis F110
MTHE349307 ncbi Methanosaeta thermophila PT1
MTHE264732 ncbi Moorella thermoacetica ATCC 390731
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H1
MTBRV ncbi Mycobacterium tuberculosis H37Rv0
MTBCDC ncbi Mycobacterium tuberculosis CDC15510
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30911
MSP409 Methylobacterium sp.0
MSP266779 ncbi Chelativorans sp. BNC10
MSP189918 ncbi Mycobacterium sp. KMS0
MSP164757 ncbi Mycobacterium sp. JLS0
MSP164756 ncbi Mycobacterium sp. MCS0
MSME246196 ncbi Mycobacterium smegmatis MC2 1550
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go11
MMAR444158 ncbi Methanococcus maripaludis C61
MMAR426368 ncbi Methanococcus maripaludis C71
MMAR402880 ncbi Methanococcus maripaludis C51
MMAR394221 ncbi Maricaulis maris MCS101
MMAR368407 ncbi Methanoculleus marisnigri JR11
MMAR267377 ncbi Methanococcus maripaludis S21
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z1
MKAN190192 ncbi Methanopyrus kandleri AV191
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26611
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-11
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK0
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MEXT419610 ncbi Methylobacterium extorquens PA10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBUR259564 ncbi Methanococcoides burtonii DSM 62421
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P20
MBOV233413 ncbi Mycobacterium bovis AF2122/970
MBAR269797 ncbi Methanosarcina barkeri Fusaro1
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAER449447 ncbi Microcystis aeruginosa NIES-8430
MACE188937 ncbi Methanosarcina acetivorans C2A1
MABS561007 ncbi Mycobacterium abscessus ATCC 199770
LXYL281090 ncbi Leifsonia xyli xyli CTCB070
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53341
LSPH444177 ncbi Lysinibacillus sphaericus C3-411
LSAK314315 ncbi Lactobacillus sakei sakei 23K1
LREU557436 ncbi Lactobacillus reuteri DSM 200161
LPLA220668 ncbi Lactobacillus plantarum WCFS11
LMON265669 ncbi Listeria monocytogenes 4b F23650
LMON169963 ncbi Listeria monocytogenes EGD-e0
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82930
LLAC272623 ncbi Lactococcus lactis lactis Il14031
LLAC272622 ncbi Lactococcus lactis cremoris SK110
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LINN272626 ncbi Listeria innocua Clip112621
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LCAS321967 ncbi Lactobacillus casei ATCC 3341
LBRE387344 ncbi Lactobacillus brevis ATCC 3671
LACI272621 ncbi Lactobacillus acidophilus NCFM0
KRAD266940 ncbi Kineococcus radiotolerans SRS302160
JSP375286 ncbi Janthinobacterium sp. Marseille0
JSP290400 ncbi Jannaschia sp. CCS10
ILOI283942 ncbi Idiomarina loihiensis L2TR0
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167901
HSP64091 ncbi Halobacterium sp. NRC-11
HSAL478009 ncbi Halobacterium salinarum R11
HNEP81032 Hyphomonas neptunium1
HMUK485914 ncbi Halomicrobium mukohataei DSM 122861
HMOD498761 ncbi Heliobacterium modesticaldum Ice11
HMAR272569 ncbi Haloarcula marismortui ATCC 430491
HBUT415426 ncbi Hyperthermus butylicus DSM 54561
HARS204773 ncbi Herminiimonas arsenicoxydans0
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-21
GKAU235909 ncbi Geobacillus kaustophilus HTA4261
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-000
FTUL418136 ncbi Francisella tularensis tularensis WY96-34181
FTUL401614 ncbi Francisella novicida U1121
FTUL393115 ncbi Francisella tularensis tularensis FSC1981
FTUL393011 ncbi Francisella tularensis holarctica OSU180
FTUL351581 Francisella tularensis holarctica FSC2001
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S850
FSP1855 Frankia sp. EAN1pec0
FSP106370 ncbi Frankia sp. CcI30
FRANT ncbi Francisella tularensis tularensis SCHU S41
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250170
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B11
FMAG334413 ncbi Finegoldia magna ATCC 293280
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ELIT314225 ncbi Erythrobacter litoralis HTCC25941
EFAE226185 ncbi Enterococcus faecalis V5831
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DSP255470 ncbi Dehalococcoides sp. CBDB10
DSP216389 ncbi Dehalococcoides sp. BAV10
DSHI398580 ncbi Dinoroseobacter shibae DFL 120
DRED349161 ncbi Desulfotomaculum reducens MI-10
DRAD243230 ncbi Deinococcus radiodurans R10
DPSY177439 ncbi Desulfotalea psychrophila LSv540
DOLE96561 ncbi Desulfococcus oleovorans Hxd30
DHAF138119 ncbi Desulfitobacterium hafniense Y510
DGEO319795 ncbi Deinococcus geothermalis DSM 113000
DETH243164 ncbi Dehalococcoides ethenogenes 1950
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA0
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTET212717 ncbi Clostridium tetani E880
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CSP501479 Citreicella sp. SE451
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)0
CPSY167879 ncbi Colwellia psychrerythraea 34H0
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPHY357809 ncbi Clostridium phytofermentans ISDg0
CPER289380 ncbi Clostridium perfringens SM1010
CPER195103 ncbi Clostridium perfringens ATCC 131240
CPER195102 ncbi Clostridium perfringens 130
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10620
CNOV386415 ncbi Clostridium novyi NT0
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1671
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF81
CKLU431943 ncbi Clostridium kluyveri DSM 5551
CJEI306537 ncbi Corynebacterium jeikeium K4110
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29011
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3810
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130320
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CEFF196164 ncbi Corynebacterium efficiens YS-3140
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131290
CDIF272563 ncbi Clostridium difficile 6300
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C1
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto1
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6571
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B1
CBOT498213 ncbi Clostridium botulinum B1 str. Okra1
CBOT441772 ncbi Clostridium botulinum F str. Langeland1
CBOT441771 ncbi Clostridium botulinum A str. Hall1
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193971
CBOT36826 Clostridium botulinum A1
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80521
CACE272562 ncbi Clostridium acetobutylicum ATCC 8241
CABO218497 ncbi Chlamydophila abortus S26/30
BXEN266265 ncbi Burkholderia xenovorans LB4001
BWEI315730 ncbi Bacillus weihenstephanensis KBAB41
BTUR314724 ncbi Borrelia turicatae 91E1350
BTRI382640 ncbi Bartonella tribocorum CIP 1054760
BTHU412694 ncbi Bacillus thuringiensis Al Hakam1
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-271
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54820
BSUI470137 ncbi Brucella suis ATCC 234450
BSUI204722 ncbi Brucella suis 13300
BSUB ncbi Bacillus subtilis subtilis 1681
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)0
BQUI283165 ncbi Bartonella quintana Toulouse0
BPUM315750 ncbi Bacillus pumilus SAFR-0321
BOVI236 Brucella ovis0
BMEL359391 ncbi Brucella melitensis biovar Abortus 23080
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M0
BLON206672 ncbi Bifidobacterium longum NCC27050
BLIC279010 ncbi Bacillus licheniformis ATCC 145801
BHER314723 ncbi Borrelia hermsii DAH0
BHEN283166 ncbi Bartonella henselae Houston-10
BHAL272558 ncbi Bacillus halodurans C-1251
BGAR290434 ncbi Borrelia garinii PBi0
BFRA295405 ncbi Bacteroides fragilis YCH460
BFRA272559 ncbi Bacteroides fragilis NCTC 93430
BCLA66692 ncbi Bacillus clausii KSM-K161
BCIC186490 Candidatus Baumannia cicadellinicola0
BCER572264 ncbi Bacillus cereus 03BB1021
BCER405917 Bacillus cereus W1
BCER315749 ncbi Bacillus cytotoxicus NVH 391-981
BCER288681 ncbi Bacillus cereus E33L1
BCER226900 ncbi Bacillus cereus ATCC 145791
BCAN483179 ncbi Brucella canis ATCC 233650
BBUR224326 ncbi Borrelia burgdorferi B310
BBAC360095 ncbi Bartonella bacilliformis KC5830
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)0
BANT592021 ncbi Bacillus anthracis A02481
BANT568206 ncbi Bacillus anthracis CDC 6841
BANT261594 ncbi Bacillus anthracis Ames Ancestor1
BANT260799 ncbi Bacillus anthracis Sterne1
BAMY326423 ncbi Bacillus amyloliquefaciens FZB421
BAFZ390236 ncbi Borrelia afzelii PKo0
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9410
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP62977 ncbi Acinetobacter sp. ADP10
ASP232721 ncbi Acidovorax sp. JS420
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K10
AORE350688 ncbi Alkaliphilus oremlandii OhILAs0
ANAE240017 Actinomyces oris MG11
AMET293826 ncbi Alkaliphilus metalliredigens QYMF0
AMAR329726 ncbi Acaryochloris marina MBIC110171
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
ACEL351607 ncbi Acidothermus cellulolyticus 11B0
AAVE397945 ncbi Acidovorax citrulli AAC00-10


Names of the homologs of the genes in the group in each of these orgs
  EG12210   EG11341   EG11189   EG10838   
ZMOB264203
XORY342109 XOO0956
XFAS405440 XFASM12_1358
XFAS183190 PD_1212
XFAS160492 XF2154
XCAM487884 XCC-B100_3367
XCAM316273 XCAORF_1192
XCAM314565 XC_3252
XCAM190485 XCC0992
XAXO190486 XAC1094
WPIP955
WPIP80849
VEIS391735
UURE95667
UURE95664
UPAR505682
UMET351160 RCIX1448
TWHI218496
TWHI203267
TVOL273116
TTHE300852 TTHA0591
TTHE262724 TT_C0222
TTEN273068 TTE1927
TSP28240 TRQ2_0428
TSP1755 TETH514_1088
TPSE340099 TETH39_0604
TPET390874 TPET_0413
TPEN368408
TPAL243276
TMAR243274 TM_0509
TLET416591 TLET_1082
TKOD69014 TK1004
TELO197221 TLR2133
TDEN243275
TACI273075 TA0343
SWOL335541 SWOL_1942
STOK273063
STHE322159
STHE299768
STHE292459 STH2715
STHE264199
SSUI391296
SSUI391295
SSP84588
SSP64471
SSP644076 SCH4B_3378
SSP387093
SSP292414 TM1040_0016
SSP1148 SLR1067
SSP1131
SSOL273057
SSAP342451 SSP0630
SRUB309807
SPYO370554
SPYO370553
SPYO370552
SPYO370551
SPYO319701
SPYO293653
SPYO286636
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SPNE488221
SPNE487214
SPNE487213
SPNE171101
SPNE170187
SPNE1313
SMUT210007
SMEL266834 SMB20942
SMED366394 SMED_4808
SMAR399550
SLAC55218 SL1157_1123
SHAE279808
SGOR29390
SEPI176280
SEPI176279
SELO269084 SYC1193_C
SAVE227882
SAUR93062 SACOL0113
SAUR93061 SAOUHSC_00088
SAUR426430 NWMN_0072
SAUR418127 SAHV_0127
SAUR367830 SAUSA300_0130
SAUR359787 SAURJH1_0119
SAUR359786 SAURJH9_0114
SAUR282459 SAS0102
SAUR282458 SAR0130
SAUR273036 SAB0067
SAUR196620 MW0102
SAUR158879 SA0123
SAUR158878 SAV0128
SALA317655
SAGA211110
SAGA208435
SAGA205921
SACI56780 SYN_01125
SACI330779
RTYP257363
RSPH349102 RSPH17025_0580
RSPH349101 RSPH17029_2305
RSPH272943 RSP_0652
RSP357808 ROSERS_2395
RSP101510
RSAL288705
RRUB269796 RRU_A3278
RRIC452659
RRIC392021
RPRO272947
RPOM246200
RMAS416276
RLEG216596 RL0078
RFEL315456
RETL347834 RHE_CH00069
RDEN375451
RCON272944
RCAS383372 RCAS_3084
RCAN293613
RBEL391896
RBEL336407
RALB246199
RAKA293614
PTOR263820
PTHE370438 PTH_2767
PSP56811
PSP117 RB3751
PRUM264731 GFRORF0450
PPEN278197 PEPE_1475
PMOB403833 PMOB_1064
PMAR93060
PMAR74547
PMAR74546
PMAR59920
PMAR167555
PMAR167546 P9301ORF_1438
PMAR167542
PMAR167540
PMAR167539
PMAR146891
PISL384616
PINT246198
PHOR70601 PH1742
PGIN242619
PFUR186497 PF1788
PCRY335284
PATL342610
PAST100379
PARS340102 PARS_0340
PARC259536
PAER178306
PACN267747
PABY272844 PAB2145
OTSU357244
OIHE221109 OB2082
OANT439375
NSP35761
NSEN222891
NPHA348780 NP4662A
NEUT335283
NEUR228410
NARO279238
MVAN350058
MTUB419947
MTUB336982
MTHE349307 MTHE_1062
MTHE264732 MOTH_0673
MTHE187420 MTH380
MTBRV
MTBCDC
MSYN262723
MSTA339860 MSP_0067
MSP409
MSP266779
MSP189918
MSP164757
MSP164756
MSME246196
MSED399549
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAZ192952 MM1162
MMAR444158 MMARC6_1577
MMAR426368 MMARC7_0342
MMAR402880 MMARC5_0494
MMAR394221 MMAR10_0813
MMAR368407 MEMAR_0700
MMAR267377 MMP1090
MLEP272631
MLAB410358 MLAB_0910
MKAN190192 MK0724
MJAN243232 MJ_0211
MHYO295358
MHYO262722
MHYO262719
MHUN323259 MHUN_2136
MGIL350054
MGEN243273
MFLO265311
MEXT419610
MCAP340047
MBUR259564 MBUR_2037
MBOV410289
MBOV233413
MBAR269797 MBAR_A1144
MART243272
MAER449447
MACE188937 MA1185
MABS561007
LXYL281090
LWEL386043 LWE2425
LSPH444177 BSPH_1273
LSAK314315 LSA0765
LREU557436 LREU_0339
LPLA220668 LP_1200
LMON265669
LMON169963
LMES203120
LLAC272623 L12335
LLAC272622
LJOH257314
LINN272626 LIN2620
LHEL405566
LGAS324831
LDEL390333
LDEL321956
LCAS321967 LSEI_2018
LBRE387344 LVIS_1903
LACI272621
KRAD266940
JSP375286
JSP290400
ILOI283942
IHOS453591
HWAL362976 HQ2650A
HSP64091 VNG0063G
HSAL478009 OE1113R
HNEP81032 HNE_0426
HMUK485914 HMUK_2040
HMOD498761 HM1_1189
HMAR272569 PNG7014
HBUT415426 HBUT_1362
HARS204773
GTHE420246 GTNG_2085
GKAU235909 GK0839
FTUL458234
FTUL418136 FTW_0416
FTUL401614 FTN_1425
FTUL393115 FTF1459C
FTUL393011
FTUL351581 FTL_0597
FSUC59374
FSP1855
FSP106370
FRANT WBTF
FPHI484022
FNOD381764 FNOD_0145
FMAG334413
ERUM302409
ERUM254945
ELIT314225 ELI_10930
EFAE226185 EF_2165
ECHA205920
ECAN269484
DSP255470
DSP216389
DSHI398580
DRED349161
DRAD243230
DPSY177439
DOLE96561
DHAF138119
DGEO319795
DETH243164
CVES412965
CTRA471473
CTRA471472
CTET212717
CSUL444179
CSP501479 CSE45_3588
CRUT413404
CPSY167879
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPHY357809
CPER289380
CPER195103
CPER195102
CPEL335992
CNOV386415
CMUR243161
CMET456442
CMAQ397948 CMAQ_1457
CKOR374847 KCR_0768
CKLU431943 CKL_2098
CJEI306537
CHYD246194 CHY_1057
CHOM360107
CGLU196627
CFEL264202
CEFF196164
CDIP257309
CDIF272563
CDES477974 DAUD_1657
CCAV227941
CBOT536232 CLM_3043
CBOT515621 CLJ_B2909
CBOT508765 CLL_A1708
CBOT498213 CLD_1886
CBOT441772 CLI_2744
CBOT441771 CLC_2552
CBOT441770 CLB_2620
CBOT36826 CBO2679
CBEI290402 CBEI_4420
CACE272562 CAC2334
CABO218497
BXEN266265 BXE_B0560
BWEI315730 BCERKBAB4_5056
BTUR314724
BTRI382640
BTHU412694 BALH_4766
BTHU281309 BT9727_4945
BTHE226186
BSUI470137
BSUI204722
BSUB BSU30870
BSP107806
BQUI283165
BPUM315750 BPUM_3207
BOVI236
BMEL359391
BMEL224914
BLON206672
BLIC279010 BL03353
BHER314723
BHEN283166
BHAL272558 BH3379
BGAR290434
BFRA295405
BFRA272559
BCLA66692 ABC0508
BCIC186490
BCER572264 BCA_5406
BCER405917 BCE_5380
BCER315749 BCER98_0430
BCER288681 BCE33L4960
BCER226900 BC_5263
BCAN483179
BBUR224326
BBAC360095
BAPH372461
BAPH198804
BANT592021 BAA_5532
BANT568206 BAMEG_5551
BANT261594 GBAA5505
BANT260799 BAS5114
BAMY326423 RBAM_012140
BAFZ390236
BABO262698
AYEL322098
AURANTIMONAS
ASP62977
ASP232721
APHA212042
APER272557
AORE350688
ANAE240017 ANA_1579
AMET293826
AMAR329726 AM1_5577
AMAR234826
ALAI441768
AFUL224325
ACEL351607
AAVE397945


Organism features enriched in list (features available for 349 out of the 380 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 3.319e-67492
Arrangment:Clusters 0.00165651617
Arrangment:Singles 0.0003479152286
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 0.00331751111
Disease:Wide_range_of_infections 0.00331751111
Disease:gastroenteritis 0.0001169113
Endospores:No 1.576e-7155211
Endospores:Yes 0.00002934553
GC_Content_Range4:0-40 1.836e-16173213
GC_Content_Range4:40-60 0.0000115110224
GC_Content_Range4:60-100 0.000010365145
GC_Content_Range7:0-30 3.439e-64247
GC_Content_Range7:30-40 7.517e-10131166
GC_Content_Range7:50-60 3.602e-741107
GC_Content_Range7:60-70 0.000110462134
Genome_Size_Range5:0-2 3.615e-15132155
Genome_Size_Range5:2-4 0.0018649133197
Genome_Size_Range5:4-6 3.295e-1272184
Genome_Size_Range5:6-10 5.620e-71247
Genome_Size_Range9:0-1 0.00011552527
Genome_Size_Range9:1-2 7.245e-11107128
Genome_Size_Range9:2-3 0.000963486120
Genome_Size_Range9:4-5 0.00001583996
Genome_Size_Range9:5-6 2.487e-63388
Genome_Size_Range9:6-8 4.673e-7838
Gram_Stain:Gram_Neg 8.410e-34131333
Gram_Stain:Gram_Pos 1.207e-22137150
Habitat:Multiple 0.000236488178
Habitat:Specialized 0.00253554153
Motility:No 7.485e-10121151
Motility:Yes 7.297e-12120267
Optimal_temp.:30-37 0.00008131818
Oxygen_Req:Anaerobic 7.228e-884102
Oxygen_Req:Facultative 0.0003669102201
Oxygen_Req:Microaerophilic 0.0001617318
Pathogenic_in:Animal 0.00451693066
Shape:Coccus 2.577e-97282
Shape:Irregular_coccus 0.00165651617
Shape:Rod 2.795e-7179347
Shape:Sphere 0.00404281719
Shape:Spiral 0.0000404934
Temp._range:Hyperthermophilic 0.00009122223
Temp._range:Mesophilic 0.0001630267473



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)1761590.7609
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181760.7400
PWY-1269 (CMP-KDO biosynthesis I)3251920.5731
NAGLIPASYN-PWY (lipid IVA biosynthesis)3481950.5447
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3001790.5410
ECASYN-PWY (enterobacterial common antigen biosynthesis)1911350.5287
GLYCOCAT-PWY (glycogen degradation I)2461560.5177
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2911720.5144
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2961730.5094
PWY-5913 (TCA cycle variation IV)3011740.5046
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2901690.4963
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251430.4841
AST-PWY (arginine degradation II (AST pathway))120950.4764
LPSSYN-PWY (superpathway of lipopolysaccharide biosynthesis)91780.4609
GDPRHAMSYN-PWY (GDP-D-rhamnose biosynthesis)1561080.4418
GLUTDEG-PWY (glutamate degradation II)1941240.4382
PYRIDOXSYN-PWY (pyridoxal 5'-phosphate biosynthesis I)4222000.4358
REDCITCYC (TCA cycle variation II)1741150.4344
UBISYN-PWY (ubiquinol-8 biosynthesis (prokaryotic))3981930.4311
PWY0-901 (selenocysteine biosynthesis I (bacteria))2301370.4278
GALACTITOLCAT-PWY (galactitol degradation)73640.4211
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951220.4204
DAPLYSINESYN-PWY (lysine biosynthesis I)3421730.4066
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2861540.4033



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG11341   EG11189   EG10838   
EG122100.9996460.9997270.999398
EG113410.9997370.998516
EG111890.999251
EG10838



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PAIRWISE BLAST SCORES:

  EG12210   EG11341   EG11189   EG10838   
EG122100.0f01.6e-72.7e-7-
EG113411.2e-70.0f0--
EG111891.2e-6-0.0f0-
EG10838---0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- LIPA-CORESYN-PWY (Lipid A-core biosynthesis) (degree of match pw to cand: 0.300, degree of match cand to pw: 0.750, average score: 0.947)
  Genes in pathway or complex:
   *in cand* 0.9997 0.9993 EG11189 (waaC) EG11189-MONOMER (ADP-heptose:LPS heptosyl transferase I)
   *in cand* 0.9997 0.9994 EG12210 (waaF) EG12210-MONOMER (ADP-heptose:LPS heptosyltransferase II)
             0.9988 0.9975 EG11339 (waaG) EG11339-MONOMER (lipopolysaccharide glucosyltransferase I)
             0.9984 0.9968 EG11340 (waaP) EG11340-MONOMER (lipopolysaccharide core heptose (I) kinase)
   *in cand* 0.9995 0.9985 EG11341 (waaQ) EG11341-MONOMER (lipopolysaccharide core heptosyl transferase III)
             0.9958 0.9956 EG11425 (waaY) EG11425-MONOMER (lipopolysaccharide core heptose (II) kinase)
             0.9125 0.6981 EG11351 (waaB) EG11351-MONOMER (UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase)
             0.9942 0.9915 EG11352 (waaI) EG11352-MONOMER (UDP-D-glucose:(glucosyl)LPS α-1,3-glucosyltransferase)
             0.9954 0.9940 EG11353 (waaJ) EG11353-MONOMER (UDP-glucose:(glucosyl)LPS α-1,2-glucosyltransferase)
             0.8879 0.7634 EG11423 (waaK) EG11423-MONOMER (lipopolysaccharide core biosynthesis; heptosyl transferase IV; probably hexose transferase)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9993 0.9985 EG10838 (rfaD) EG10838-MONOMER (ADP-L-glycero-D-mannoheptose-6-epimerase)

- LPSSYN-PWY (superpathway of lipopolysaccharide biosynthesis) (degree of match pw to cand: 0.120, degree of match cand to pw: 0.750, average score: 0.607)
  Genes in pathway or complex:
             0.5096 0.1924 EG10545 (lpxA) UDPNACETYLGLUCOSAMACYLTRANS-MONOMER (LpxA)
             0.8884 0.8219 EG10265 (lpxC) UDPACYLGLCNACDEACETYL-MONOMER (UDP-3-O-acyl-N-acetylglucosamine deacetylase)
             0.4551 0.1931 EG10316 (lpxD) UDPHYDROXYMYRGLUCOSAMNACETYLTRANS-MONO (UDP-3-O-[3-hydroxymyristoyl]glucosamine N-acetyltransferase)
             0.0737 0.0324 EG12666 (lpxH) EG12666-MONOMER (UDP-2,3-diacylglucosamine hydrolase)
             0.5624 0.0882 EG11409 (lpxK) TETRAACYLDISACC4KIN-MONOMER (tetraacyldisaccharide 4'-kinase)
             0.6123 0.4897 EG10546 (lpxB) LIPIDADISACCHARIDESYNTH-MONOMER (LpxB)
             0.4891 0.1914 EG10973 (gutQ) EG10973-MONOMER (D-arabinose 5-phosphate isomerase)
             0.6079 0.2347 G7662 (kdsD) G7662-MONOMER (D-arabinose 5-phosphate isomerase)
             0.4813 0.3601 EG10518 (kdsA) KDO-8PSYNTH-MONOMER (3-deoxy-D-manno-octulosonate 8-phosphate synthase)
             0.6525 0.4967 G7663 (kdsC) G7663-MONOMER (3-deoxy-D-manno-octulosonate 8-phosphate phosphatase monomer)
             0.1051 0.0033 EG10519 (kdsB) CPM-KDOSYNTH-MONOMER (3-deoxy-D-manno-octulosonate cytidylyltransferase)
             0.9989 0.9979 EG10520 (waaA) KDOTRANS-MONOMER (KDO transferase)
             0.8745 0.5842 EG10614 (lpxM) MYRISTOYLACYLTRAN-MONOMER (myristoyl-acyl carrier protein (ACP)-dependent acyltransferase)
             0.8186 0.4038 EG10464 (lpxL) LAUROYLACYLTRAN-MONOMER (lauroyl acyltransferase)
             0.8879 0.7634 EG11423 (waaK) EG11423-MONOMER (lipopolysaccharide core biosynthesis; heptosyl transferase IV; probably hexose transferase)
             0.9954 0.9940 EG11353 (waaJ) EG11353-MONOMER (UDP-glucose:(glucosyl)LPS α-1,2-glucosyltransferase)
             0.9942 0.9915 EG11352 (waaI) EG11352-MONOMER (UDP-D-glucose:(glucosyl)LPS α-1,3-glucosyltransferase)
             0.9125 0.6981 EG11351 (waaB) EG11351-MONOMER (UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase)
             0.9958 0.9956 EG11425 (waaY) EG11425-MONOMER (lipopolysaccharide core heptose (II) kinase)
   *in cand* 0.9995 0.9985 EG11341 (waaQ) EG11341-MONOMER (lipopolysaccharide core heptosyl transferase III)
             0.9984 0.9968 EG11340 (waaP) EG11340-MONOMER (lipopolysaccharide core heptose (I) kinase)
             0.9988 0.9975 EG11339 (waaG) EG11339-MONOMER (lipopolysaccharide glucosyltransferase I)
   *in cand* 0.9997 0.9994 EG12210 (waaF) EG12210-MONOMER (ADP-heptose:LPS heptosyltransferase II)
   *in cand* 0.9997 0.9993 EG11189 (waaC) EG11189-MONOMER (ADP-heptose:LPS heptosyl transferase I)
             0.1360 0.0039 EG50003 (acpP) TRANS-DELTA3-CIS-DELTA5-DODECENOYL-ACP (trans-Δ3-cis-Δ5-dodecenoyl-ACP)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9993 0.9985 EG10838 (rfaD) EG10838-MONOMER (ADP-L-glycero-D-mannoheptose-6-epimerase)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10838 EG11189 EG12210 (centered at EG12210)
EG11341 (centered at EG11341)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  EG12210   EG11341   EG11189   EG10838   
220/623207/623217/623333/623
AAEO224324:0:Tyes000141
AAUR290340:2:Tyes0-21990
ABAC204669:0:Tyes9289289280
ABAU360910:0:Tyes2109-01236
ABOR393595:0:Tyes86084-
ABUT367737:0:Tyes44260
ACAU438753:0:Tyes0-12
ACRY349163:8:Tyes0--163
ADEH290397:0:Tyes09570-
AEHR187272:0:Tyes0141417
AFER243159:0:Tyes1740-16460
AHYD196024:0:Tyes118004036
AMAR329726:9:Tyes---0
ANAE240017:0:Tyes---0
APLE416269:0:Tyes1235012341562
APLE434271:0:Tno1233012321566
ASAL382245:5:Tyes40330050
ASP1667:3:Tyes8-03745
ASP62928:0:Tyes1779017801778
ASP76114:2:Tyes1170602
AVAR240292:3:Tyes-1371-0
BAMB339670:3:Tno195816240163
BAMB398577:3:Tno179614710151
BAMY326423:0:Tyes---0
BANT260799:0:Tno---0
BANT261594:2:Tno---0
BANT568206:2:Tyes---0
BANT592021:2:Tno---0
BBAC264462:0:Tyes81208121896
BBRO257310:0:Tyes3259-03330
BCEN331271:2:Tno163113070167
BCEN331272:3:Tyes173614150159
BCER226900:1:Tyes---0
BCER288681:0:Tno---0
BCER315749:1:Tyes---0
BCER405917:1:Tyes---0
BCER572264:1:Tno---0
BCLA66692:0:Tyes---0
BHAL272558:0:Tyes---0
BJAP224911:0:Fyes1--0
BLIC279010:0:Tyes---0
BMAL243160:1:Tno014201673122
BMAL320388:1:Tno04541311932
BMAL320389:1:Tyes02971982173
BPAR257311:0:Tno1487-02819
BPER257313:0:Tyes1995-0768
BPET94624:0:Tyes49049329520
BPSE272560:1:Tyes033218891726
BPSE320372:1:Tno038922412078
BPSE320373:1:Tno036521631968
BPUM315750:0:Tyes---0
BSP36773:2:Tyes200616920174
BSP376:0:Tyes1--0
BSUB:0:Tyes---0
BTHA271848:1:Tno0331823969
BTHU281309:1:Tno---0
BTHU412694:1:Tno---0
BVIE269482:7:Tyes190015600146
BWEI315730:4:Tyes---0
BXEN266265:1:Tyes0---
CACE272562:1:Tyes---0
CAULO:0:Tyes00-1065
CBEI290402:0:Tyes---0
CBLO203907:0:Tyes1-20
CBLO291272:0:Tno1-20
CBOT36826:1:Tno---0
CBOT441770:0:Tyes---0
CBOT441771:0:Tno---0
CBOT441772:1:Tno---0
CBOT498213:1:Tno---0
CBOT508765:1:Tyes---0
CBOT515621:2:Tyes---0
CBOT536232:0:Tno---0
CBUR227377:1:Tyes796113111310
CBUR360115:1:Tno166900978
CBUR434922:2:Tno016881688528
CCHL340177:0:Tyes0--996
CCON360104:2:Tyes3032972940
CCUR360105:0:Tyes069968
CDES477974:0:Tyes---0
CFET360106:0:Tyes113015
CHUT269798:0:Tyes-2952950
CHYD246194:0:Tyes---0
CJAP155077:0:Tyes0-834-
CJEJ192222:0:Tyes140017
CJEJ195099:0:Tno8-012
CJEJ354242:2:Tyes13-017
CJEJ360109:0:Tyes4-110
CJEJ407148:0:Tno19-024
CKLU431943:1:Tyes---0
CKOR374847:0:Tyes---0
CMAQ397948:0:Tyes---0
CMIC31964:2:Tyes0-0-
CMIC443906:2:Tyes0-0-
CPRO264201:0:Fyes007071606
CSAL290398:0:Tyes1880
CSP501479:7:Fyes---0
CSP78:2:Tyes0001735
CTEP194439:0:Tyes869869-0
CVIO243365:0:Tyes192260802877
DARO159087:0:Tyes3175038081155
DDES207559:0:Tyes001482018
DNOD246195:0:Tyes00139-
DVUL882:1:Tyes-514-0
ECAR218491:0:Tyes4035
ECOL199310:0:Tno11120
ECOL316407:0:Tno1201113
ECOL331111:6:Tno11120
ECOL362663:0:Tno11120
ECOL364106:1:Tno11120
ECOL405955:2:Tyes11120
ECOL409438:6:Tyes11020
ECOL413997:0:Tno11220
ECOL439855:4:Tno11120
ECOL469008:0:Tno1101012
ECOL481805:0:Tno100911
ECOL585034:0:Tno11120
ECOL585035:0:Tno11120
ECOL585055:0:Tno11020
ECOL585056:2:Tno11020
ECOL585057:0:Tno11120
ECOL585397:0:Tno11020
ECOL83334:0:Tno11020
ECOLI:0:Tno11320
ECOO157:0:Tno11020
EFAE226185:3:Tyes---0
EFER585054:1:Tyes11320
ELIT314225:0:Tyes---0
ESP42895:1:Tyes2013
FALN326424:0:Tyes000-
FJOH376686:0:Tyes-2195-0
FNOD381764:0:Tyes---0
FNUC190304:0:Tyes9729729720
FRANT:0:Tno---0
FTUL351581:0:Tno---0
FTUL393115:0:Tyes---0
FTUL401614:0:Tyes---0
FTUL418136:0:Tno---0
GBET391165:0:Tyes0--1205
GFOR411154:0:Tyes-1237-0
GKAU235909:1:Tyes---0
GMET269799:1:Tyes161620
GOXY290633:5:Tyes01132-313
GSUL243231:0:Tyes14100-
GTHE420246:1:Tyes---0
GURA351605:0:Tyes1210-
GVIO251221:0:Tyes295295-0
HACI382638:1:Tyes93700622
HAUR316274:2:Tyes000859
HBUT415426:0:Tyes---0
HCHE349521:0:Tyes0913742
HDUC233412:0:Tyes175001246
HHAL349124:0:Tyes-1507-0
HHEP235279:0:Tyes829-0553
HINF281310:0:Tyes8200820826
HINF374930:0:Tyes9990
HINF71421:0:Tno8250-833
HMAR272569:7:Tyes---0
HMOD498761:0:Tyes---0
HMUK485914:1:Tyes---0
HNEP81032:0:Tyes0---
HPY:0:Tno92200583
HPYL357544:1:Tyes87000566
HPYL85963:0:Tno84400522
HSAL478009:4:Tyes---0
HSOM205914:1:Tyes1102
HSOM228400:0:Tno1120
HSP64091:2:Tno---0
HWAL362976:1:Tyes---0
KPNE272620:2:Tyes1720
LBIF355278:2:Tyes7597590955
LBIF456481:2:Tno7827820976
LBOR355276:1:Tyes512512062
LBOR355277:1:Tno00720230
LBRE387344:2:Tyes---0
LCAS321967:1:Tyes---0
LCHO395495:0:Tyes880-
LINN272626:1:Tno---0
LINT189518:1:Tyes5195190153
LINT267671:1:Tno000300
LINT363253:3:Tyes6030-526
LLAC272623:0:Tyes---0
LPLA220668:0:Tyes---0
LPNE272624:0:Tno000-
LPNE297245:1:Fno000-
LPNE297246:1:Fyes000-
LPNE400673:0:Tno-00-
LREU557436:0:Tyes---0
LSAK314315:0:Tyes---0
LSPH444177:1:Tyes---0
LWEL386043:0:Tyes---0
MACE188937:0:Tyes---0
MAEO419665:0:Tyes-0-5
MAQU351348:2:Tyes4003
MAVI243243:0:Tyes000-
MBAR269797:1:Tyes---0
MBUR259564:0:Tyes---0
MCAP243233:0:Tyes2502502500
MFLA265072:0:Tyes150018
MHUN323259:0:Tyes---0
MJAN243232:2:Tyes---0
MKAN190192:0:Tyes---0
MLAB410358:0:Tyes---0
MLOT266835:2:Tyes1120
MMAG342108:0:Tyes0--68
MMAR267377:0:Tyes---0
MMAR368407:0:Tyes---0
MMAR394221:0:Tyes-0--
MMAR402880:1:Tyes---0
MMAR426368:0:Tyes---0
MMAR444158:0:Tyes---0
MMAZ192952:0:Tyes---0
MPET420662:1:Tyes78500-
MSP400668:0:Tyes1814001813
MSTA339860:0:Tyes---0
MSUC221988:0:Tyes2183188021820
MTHE187420:0:Tyes---0
MTHE264732:0:Tyes---0
MTHE349307:0:Tyes---0
MXAN246197:0:Tyes-00-
NFAR247156:2:Tyes00--
NGON242231:0:Tyes525-14000
NHAM323097:2:Tyes3304
NMEN122586:0:Tno664-12710
NMEN122587:0:Tyes1390-0750
NMEN272831:0:Tno576-11720
NMEN374833:0:Tno636-13110
NMUL323848:3:Tyes800-
NOCE323261:1:Tyes016162021
NPHA348780:2:Tyes---0
NSP103690:6:Tyes-2341-0
NSP387092:0:Tyes--03
NWIN323098:0:Tyes3-04
OCAR504832:0:Tyes355304
OIHE221109:0:Tyes---0
PABY272844:0:Tyes---0
PAER208963:0:Tyes3717-37160
PAER208964:0:Tno1699-16980
PARS340102:0:Tyes---0
PCAR338963:0:Tyes1247124712480
PDIS435591:0:Tyes-2779-0
PENT384676:0:Tyes100-
PFLU205922:0:Tyes001-
PFLU216595:1:Tyes00120
PFLU220664:0:Tyes001-
PFUR186497:0:Tyes---0
PHAL326442:1:Tyes-00-
PHOR70601:0:Tyes---0
PING357804:0:Tyes5006
PLUM243265:0:Fyes1620
PLUT319225:0:Tyes580584-0
PMAR167546:0:Tyes---0
PMEN399739:0:Tyes001-
PMOB403833:0:Tyes---0
PMUL272843:1:Tyes542054140
PNAP365044:8:Tyes0-9722668
PPEN278197:0:Tyes---0
PPRO298386:2:Tyes-0011
PPUT160488:0:Tno001-
PPUT351746:0:Tyes001-
PPUT76869:0:Tno0012283
PRUM264731:0:Tyes---0
PSP117:0:Tyes---0
PSP296591:2:Tyes0-14241568
PSP312153:0:Tyes15833500249
PSTU379731:0:Tyes3016301630150
PSYR205918:0:Tyes001-
PSYR223283:2:Tyes4273427342720
PTHE370438:0:Tyes---0
RCAS383372:0:Tyes---0
RETL347834:5:Tyes---0
REUT264198:2:Tyes-0--
REUT264198:3:Tyes0-1992034
REUT381666:2:Tyes0-2252243
RFER338969:1:Tyes0-24901053
RLEG216596:6:Tyes---0
RMET266264:2:Tyes0-2211237
RPAL258594:0:Tyes1-40
RPAL316055:0:Tyes2003
RPAL316056:0:Tyes2-03
RPAL316057:0:Tyes3-04
RPAL316058:0:Tyes3-04
RRUB269796:1:Tyes---0
RSOL267608:1:Tyes0-127354
RSP357808:0:Tyes---0
RSPH272943:4:Tyes---0
RSPH349101:2:Tno---0
RSPH349102:5:Tyes---0
RXYL266117:0:Tyes0502392
SACI56780:0:Tyes---0
SARE391037:0:Tyes0-2529-
SAUR158878:1:Tno---0
SAUR158879:1:Tno---0
SAUR196620:0:Tno---0
SAUR273036:0:Tno---0
SAUR282458:0:Tno---0
SAUR282459:0:Tno---0
SAUR359786:1:Tno---0
SAUR359787:1:Tno---0
SAUR367830:3:Tno---0
SAUR418127:0:Tyes---0
SAUR426430:0:Tno---0
SAUR93061:0:Fno---0
SAUR93062:1:Tno---0
SBAL399599:3:Tyes-00-
SBAL402882:1:Tno-00-
SBOY300268:1:Tyes11020
SCO:2:Fyes-05-
SDEG203122:0:Tyes-00-
SDEN318161:0:Tyes000-
SDYS300267:1:Tyes11120
SELO269084:0:Tyes---0
SENT209261:0:Tno1301214
SENT220341:0:Tno1301214
SENT295319:0:Tno11320
SENT321314:2:Tno11320
SENT454169:2:Tno11320
SERY405948:0:Tyes000-
SFLE198214:0:Tyes11020
SFLE373384:0:Tno90810
SFUM335543:0:Tyes7052356
SGLO343509:3:Tyes1820
SHAL458817:0:Tyes019601960-
SHIGELLA:0:Tno90810
SLAC55218:1:Fyes---0
SLOI323850:0:Tyes-880
SMED366394:2:Tyes---0
SMEL266834:1:Tyes---0
SONE211586:1:Tyes-00-
SPEA398579:0:Tno-00-
SPRO399741:1:Tyes1720
SSAP342451:2:Tyes---0
SSED425104:0:Tyes-00-
SSON300269:1:Tyes100911
SSP1148:0:Tyes---0
SSP292414:2:Tyes---0
SSP321327:0:Tyes-122001608
SSP321332:0:Tyes16041200-
SSP644076:6:Fyes---0
SSP94122:1:Tyes000-
STHE292459:0:Tyes---0
STRO369723:0:Tyes0-2200-
STYP99287:1:Tyes11320
SWOL335541:0:Tyes---0
TACI273075:0:Tyes---0
TCRU317025:0:Tyes0-01
TDEN292415:0:Tyes114700223
TDEN326298:0:Tyes310100
TELO197221:0:Tyes-0--
TERY203124:0:Tyes-0-3222
TFUS269800:0:Tyes000-
TKOD69014:0:Tyes---0
TLET416591:0:Tyes---0
TMAR243274:0:Tyes---0
TPET390874:0:Tno---0
TPSE340099:0:Tyes---0
TROS309801:1:Tyes1011049
TSP1755:0:Tyes---0
TSP28240:0:Tyes---0
TTEN273068:0:Tyes---0
TTHE262724:1:Tyes---0
TTHE300852:2:Tyes---0
TTUR377629:0:Tyes-00-
UMET351160:0:Tyes---0
VCHO:0:Tyes110015
VCHO345073:1:Tno100014
VFIS312309:2:Tyes40017
VPAR223926:1:Tyes180-20
VVUL196600:2:Tyes300032
VVUL216895:1:Tno220200
WSUC273121:0:Tyes701110711100
XAUT78245:1:Tyes0-12
XAXO190486:0:Tyes-0--
XCAM190485:0:Tyes-0--
XCAM314565:0:Tno-0--
XCAM316273:0:Tno-0--
XCAM487884:0:Tno-0--
XFAS160492:2:Tno-0--
XFAS183190:1:Tyes-0--
XFAS405440:0:Tno-0--
XORY291331:0:Tno00--
XORY342109:0:Tyes-0--
XORY360094:0:Tno00--
YENT393305:1:Tyes146402
YPES187410:5:Tno2371930
YPES214092:3:Tno134202
YPES349746:2:Tno175102
YPES360102:3:Tyes139520
YPES377628:2:Tno3567035683566
YPES386656:2:Tno6490650648
YPSE273123:2:Tno152702
YPSE349747:2:Tno1340802



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