CANDIDATE ID: 925

CANDIDATE ID: 925

NUMBER OF GENES: 4
AVERAGE SCORE:    9.9934767e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- EG12012 (osmF) (b2131)
   Products of gene:
     - YEHZ-MONOMER (OsmF)
     - ABC-40-CPLX (YehW/YehX/YehY/YehZ ABC transporter)

- EG12011 (yehY) (b2130)
   Products of gene:
     - YEHY-MONOMER (YehY)
     - ABC-40-CPLX (YehW/YehX/YehY/YehZ ABC transporter)

- EG12010 (yehX) (b2129)
   Products of gene:
     - YEHX-MONOMER (YehX)
     - ABC-40-CPLX (YehW/YehX/YehY/YehZ ABC transporter)

- EG10771 (proV) (b2677)
   Products of gene:
     - PROV-MONOMER (ProV)
     - ABC-26-CPLX (proline ABC transporter)
       Reactions:
        a quaternary amine[periplasmic space] + ATP + H2O  ->  a quaternary amine[cytosol] + phosphate + ADP
        ATP + L-proline[periplasmic space] + H2O  ->  ADP + phosphate + L-proline[cytosol]



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ORGANISMS CONTAINING AT LEAST 3 GENES FROM THE GROUP:

Total number of orgs: 249
Effective number of orgs (counting one per cluster within 468 clusters): 157

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317584
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329534
YPES386656 ncbi Yersinia pestis Pestoides F4
YPES377628 ncbi Yersinia pestis Nepal5164
YPES360102 ncbi Yersinia pestis Antiqua4
YPES349746 ncbi Yersinia pestis Angola4
YPES214092 ncbi Yersinia pestis CO923
YPES187410 ncbi Yersinia pestis KIM 104
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80814
VEIS391735 ncbi Verminephrobacter eiseniae EF01-24
TSP1755 Thermoanaerobacter sp.4
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT24
STRO369723 ncbi Salinispora tropica CNB-4404
STHE299768 ncbi Streptococcus thermophilus CNRZ10663
STHE292459 ncbi Symbiobacterium thermophilum IAM 148633
STHE264199 ncbi Streptococcus thermophilus LMG 183113
SSUI391296 ncbi Streptococcus suis 98HAH333
SSUI391295 ncbi Streptococcus suis 05ZYH333
SSP321327 ncbi Synechococcus sp. JA-3-3Ab3
SSON300269 ncbi Shigella sonnei Ss0464
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153054
SRUB309807 ncbi Salinibacter ruber DSM 138553
SPYO370554 ncbi Streptococcus pyogenes MGAS107504
SPYO370553 ncbi Streptococcus pyogenes MGAS20964
SPYO370552 ncbi Streptococcus pyogenes MGAS102704
SPYO370551 ncbi Streptococcus pyogenes MGAS94294
SPYO319701 ncbi Streptococcus pyogenes MGAS61804
SPYO293653 ncbi Streptococcus pyogenes MGAS50053
SPYO286636 ncbi Streptococcus pyogenes MGAS103944
SPYO198466 ncbi Streptococcus pyogenes MGAS3153
SPYO193567 ncbi Streptococcus pyogenes SSI-14
SPYO186103 ncbi Streptococcus pyogenes MGAS82324
SPYO160490 ncbi Streptococcus pyogenes M1 GAS3
SPRO399741 ncbi Serratia proteamaculans 5684
SMUT210007 ncbi Streptococcus mutans UA1594
SMEL266834 ncbi Sinorhizobium meliloti 10214
SMED366394 ncbi Sinorhizobium medicae WSM4194
SHIGELLA ncbi Shigella flexneri 2a str. 2457T4
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14354
SFLE373384 ncbi Shigella flexneri 5 str. 84014
SFLE198214 ncbi Shigella flexneri 2a str. 3014
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23384
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122284
SEPI176279 ncbi Staphylococcus epidermidis RP62A4
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4764
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B674
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91504
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT184
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty24
SDYS300267 ncbi Shigella dysenteriae Sd1973
SCO ncbi Streptomyces coelicolor A3(2)3
SBOY300268 ncbi Shigella boydii Sb2274
SAVE227882 ncbi Streptomyces avermitilis MA-46804
SAUR93062 ncbi Staphylococcus aureus aureus COL4
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83254
SAUR426430 ncbi Staphylococcus aureus aureus Newman4
SAUR418127 ncbi Staphylococcus aureus aureus Mu34
SAUR367830 Staphylococcus aureus aureus USA3004
SAUR359787 ncbi Staphylococcus aureus aureus JH14
SAUR359786 ncbi Staphylococcus aureus aureus JH94
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4764
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2524
SAUR273036 ncbi Staphylococcus aureus RF1224
SAUR196620 ncbi Staphylococcus aureus aureus MW24
SAUR158879 ncbi Staphylococcus aureus aureus N3154
SAUR158878 ncbi Staphylococcus aureus aureus Mu504
SARE391037 ncbi Salinispora arenicola CNS-2054
SAGA211110 ncbi Streptococcus agalactiae NEM3164
SAGA208435 ncbi Streptococcus agalactiae 2603V/R4
SAGA205921 ncbi Streptococcus agalactiae A9094
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99414
RSP357808 ncbi Roseiflexus sp. RS-13
RSP101510 ncbi Rhodococcus jostii RHA13
RSOL267608 ncbi Ralstonia solanacearum GMI10003
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332093
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111704
RPAL316058 ncbi Rhodopseudomonas palustris HaA23
RPAL316057 ncbi Rhodopseudomonas palustris BisB53
RPAL316056 ncbi Rhodopseudomonas palustris BisB183
RPAL316055 ncbi Rhodopseudomonas palustris BisA533
RMET266264 ncbi Ralstonia metallidurans CH344
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38414
RFER338969 ncbi Rhodoferax ferrireducens T1183
REUT381666 ncbi Ralstonia eutropha H163
REUT264198 ncbi Ralstonia eutropha JMP1344
RETL347834 ncbi Rhizobium etli CFN 424
RCAS383372 ncbi Roseiflexus castenholzii DSM 139413
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30004
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a4
PSP296591 ncbi Polaromonas sp. JS6663
PPUT76869 ncbi Pseudomonas putida GB-14
PPUT351746 ncbi Pseudomonas putida F14
PPUT160488 ncbi Pseudomonas putida KT24404
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257454
PMOB403833 ncbi Petrotoga mobilis SJ953
PMEN399739 ncbi Pseudomonas mendocina ymp4
PFLU220664 ncbi Pseudomonas fluorescens Pf-54
PFLU216595 ncbi Pseudomonas fluorescens SBW254
PFLU205922 ncbi Pseudomonas fluorescens Pf0-14
PENT384676 ncbi Pseudomonas entomophila L484
PDIS435591 ncbi Parabacteroides distasonis ATCC 85033
PAER208964 ncbi Pseudomonas aeruginosa PAO14
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA144
PACN267747 ncbi Propionibacterium acnes KPA1712023
OIHE221109 ncbi Oceanobacillus iheyensis HTE8314
OANT439375 ncbi Ochrobactrum anthropi ATCC 491884
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2553
NSP35761 Nocardioides sp.3
NSP103690 ncbi Nostoc sp. PCC 71203
NHAM323097 ncbi Nitrobacter hamburgensis X143
MXAN246197 ncbi Myxococcus xanthus DK 16224
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-14
MTHE264732 ncbi Moorella thermoacetica ATCC 390734
MSP409 Methylobacterium sp.3
MSP266779 ncbi Chelativorans sp. BNC14
MSP189918 ncbi Mycobacterium sp. KMS3
MSP164757 ncbi Mycobacterium sp. JLS3
MSP164756 ncbi Mycobacterium sp. MCS3
MMAZ192952 ncbi Methanosarcina mazei Go14
MMAR394221 ncbi Maricaulis maris MCS103
MLOT266835 ncbi Mesorhizobium loti MAFF3030994
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK4
MEXT419610 ncbi Methylobacterium extorquens PA13
MBUR259564 ncbi Methanococcoides burtonii DSM 62424
MABS561007 ncbi Mycobacterium abscessus ATCC 199773
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53344
LSPH444177 ncbi Lysinibacillus sphaericus C3-414
LSAK314315 ncbi Lactobacillus sakei sakei 23K4
LPLA220668 ncbi Lactobacillus plantarum WCFS14
LMON265669 ncbi Listeria monocytogenes 4b F23654
LMON169963 ncbi Listeria monocytogenes EGD-e4
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82934
LLAC272623 ncbi Lactococcus lactis lactis Il14033
LLAC272622 ncbi Lactococcus lactis cremoris SK113
LJOH257314 ncbi Lactobacillus johnsonii NCC 5333
LINN272626 ncbi Listeria innocua Clip112624
LGAS324831 ncbi Lactobacillus gasseri ATCC 333233
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118423
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3653
LCAS321967 ncbi Lactobacillus casei ATCC 3344
LBRE387344 ncbi Lactobacillus brevis ATCC 3673
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785784
HCHE349521 ncbi Hahella chejuensis KCTC 23964
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237793
GVIO251221 ncbi Gloeobacter violaceus PCC 74213
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-23
GKAU235909 ncbi Geobacillus kaustophilus HTA4263
FALN326424 ncbi Frankia alni ACN14a3
ESP42895 Enterobacter sp.4
ELIT314225 ncbi Erythrobacter litoralis HTCC25943
EFER585054 ncbi Escherichia fergusonii ATCC 354694
EFAE226185 ncbi Enterococcus faecalis V5834
ECOO157 ncbi Escherichia coli O157:H7 EDL9334
ECOL83334 Escherichia coli O157:H74
ECOL585397 ncbi Escherichia coli ED1a4
ECOL585057 ncbi Escherichia coli IAI394
ECOL585056 ncbi Escherichia coli UMN0264
ECOL585055 ncbi Escherichia coli 559894
ECOL585035 ncbi Escherichia coli S884
ECOL585034 ncbi Escherichia coli IAI14
ECOL481805 ncbi Escherichia coli ATCC 87394
ECOL469008 ncbi Escherichia coli BL21(DE3)4
ECOL439855 ncbi Escherichia coli SMS-3-54
ECOL413997 ncbi Escherichia coli B str. REL6064
ECOL409438 ncbi Escherichia coli SE114
ECOL405955 ncbi Escherichia coli APEC O14
ECOL364106 ncbi Escherichia coli UTI894
ECOL362663 ncbi Escherichia coli 5364
ECOL331111 ncbi Escherichia coli E24377A4
ECOL316407 ncbi Escherichia coli K-12 substr. W31104
ECOL199310 ncbi Escherichia coli CFT0734
DRAD243230 ncbi Deinococcus radiodurans R14
DHAF138119 ncbi Desulfitobacterium hafniense Y514
DGEO319795 ncbi Deinococcus geothermalis DSM 113003
CVIO243365 ncbi Chromobacterium violaceum ATCC 124723
CTET212717 ncbi Clostridium tetani E884
CSP78 Caulobacter sp.3
CSP501479 Citreicella sp. SE454
CSAL290398 ncbi Chromohalobacter salexigens DSM 30434
CPHY357809 ncbi Clostridium phytofermentans ISDg4
CPER289380 ncbi Clostridium perfringens SM1014
CPER195103 ncbi Clostridium perfringens ATCC 131244
CPER195102 ncbi Clostridium perfringens 134
CNOV386415 ncbi Clostridium novyi NT4
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3824
CMIC31964 ncbi Clavibacter michiganensis sepedonicus4
CKLU431943 ncbi Clostridium kluyveri DSM 5554
CEFF196164 ncbi Corynebacterium efficiens YS-3143
CDIF272563 ncbi Clostridium difficile 6304
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1113
CBUR360115 ncbi Coxiella burnetii RSA 3313
CBUR227377 ncbi Coxiella burnetii RSA 4933
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto4
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6574
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B4
CBOT498213 ncbi Clostridium botulinum B1 str. Okra4
CBOT441772 ncbi Clostridium botulinum F str. Langeland4
CBOT441771 ncbi Clostridium botulinum A str. Hall4
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193974
CBOT36826 Clostridium botulinum A4
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80524
CACE272562 ncbi Clostridium acetobutylicum ATCC 8244
BXEN266265 ncbi Burkholderia xenovorans LB4004
BWEI315730 ncbi Bacillus weihenstephanensis KBAB44
BVIE269482 ncbi Burkholderia vietnamiensis G44
BTHU412694 ncbi Bacillus thuringiensis Al Hakam4
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-274
BTHA271848 ncbi Burkholderia thailandensis E2644
BSUI470137 ncbi Brucella suis ATCC 234454
BSUI204722 ncbi Brucella suis 13304
BSUB ncbi Bacillus subtilis subtilis 1684
BSP376 Bradyrhizobium sp.3
BSP36773 Burkholderia sp.4
BPUM315750 ncbi Bacillus pumilus SAFR-0324
BPSE320373 ncbi Burkholderia pseudomallei 6684
BPSE320372 ncbi Burkholderia pseudomallei 1710b4
BPSE272560 ncbi Burkholderia pseudomallei K962434
BOVI236 Brucella ovis4
BMEL359391 ncbi Brucella melitensis biovar Abortus 23084
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M4
BMAL320389 ncbi Burkholderia mallei NCTC 102474
BMAL320388 ncbi Burkholderia mallei SAVP13
BMAL243160 ncbi Burkholderia mallei ATCC 233444
BLIC279010 ncbi Bacillus licheniformis ATCC 145804
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1103
BFRA295405 ncbi Bacteroides fragilis YCH463
BFRA272559 ncbi Bacteroides fragilis NCTC 93433
BCLA66692 ncbi Bacillus clausii KSM-K164
BCER572264 ncbi Bacillus cereus 03BB1024
BCER405917 Bacillus cereus W4
BCER288681 ncbi Bacillus cereus E33L4
BCER226900 ncbi Bacillus cereus ATCC 145794
BCEN331272 ncbi Burkholderia cenocepacia HI24244
BCEN331271 ncbi Burkholderia cenocepacia AU 10544
BCAN483179 ncbi Brucella canis ATCC 233654
BANT592021 ncbi Bacillus anthracis A02484
BANT568206 ncbi Bacillus anthracis CDC 6844
BANT261594 ncbi Bacillus anthracis Ames Ancestor4
BANT260799 ncbi Bacillus anthracis Sterne4
BAMY326423 ncbi Bacillus amyloliquefaciens FZB424
BAMB398577 ncbi Burkholderia ambifaria MC40-64
BAMB339670 ncbi Burkholderia ambifaria AMMD4
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9414
AVAR240292 ncbi Anabaena variabilis ATCC 294133
ASP1667 Arthrobacter sp.4
ANAE240017 Actinomyces oris MG13
AMAR329726 ncbi Acaryochloris marina MBIC110173
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43044
AAUR290340 ncbi Arthrobacter aurescens TC14


Names of the homologs of the genes in the group in each of these orgs
  EG12012   EG12011   EG12010   EG10771   
YPSE349747 YPSIP31758_2786YPSIP31758_2785YPSIP31758_2784YPSIP31758_1061
YPSE273123 YPTB1236YPTB1237YPTB1238YPTB2959
YPES386656 YPDSF_2500YPDSF_2499YPDSF_2498YPDSF_1625
YPES377628 YPN_2781YPN_2779YPN_2778YPN_1133
YPES360102 YPA_0907YPA_0909YPA_0910YPA_2375
YPES349746 YPANGOLA_A1332YPANGOLA_A1330YPANGOLA_A1329YPANGOLA_A3536
YPES214092 YPO1197YPO1198YPO2647
YPES187410 Y2994Y2992Y2991Y1221
YENT393305 YE2865YE2864YE2863YE0925
VEIS391735 VEIS_2247VEIS_2244VEIS_2913VEIS_4059
TSP1755 TETH514_1203TETH514_1202TETH514_1201TETH514_1201
STYP99287 STM2165STM2164STM2163STM2809
STRO369723 STROP_1633STROP_4290STROP_1635STROP_1641
STHE299768 STR1311STR1309STR1310
STHE292459 STH2627STH2630STH2630
STHE264199 STU1311STU1309STU1310
SSUI391296 SSU98_1610SSU98_1611SSU98_1611
SSUI391295 SSU05_1600SSU05_1601SSU05_1601
SSP321327 CYA_2230CYA_2231CYA_2231
SSON300269 SSO_2188SSO_2187SSO_2186SSO_2822
SSAP342451 SSP1996SSP1996SSP0451SSP0451
SRUB309807 SRU_2474SRU_2473SRU_0431
SPYO370554 MGAS10750_SPY1005MGAS10750_SPY1005MGAS10750_SPY1004MGAS10750_SPY0163
SPYO370553 MGAS2096_SPY0930MGAS2096_SPY0930MGAS2096_SPY0929MGAS2096_SPY0167
SPYO370552 MGAS10270_SPY0970MGAS10270_SPY0970MGAS10270_SPY0969MGAS10270_SPY0159
SPYO370551 MGAS9429_SPY0973MGAS9429_SPY0973MGAS9429_SPY0972MGAS9429_SPY0159
SPYO319701 M28_SPY0830M28_SPY0830M28_SPY0829M28_SPY0155
SPYO293653 M5005_SPY0856M5005_SPY0855M5005_SPY0157
SPYO286636 M6_SPY0852M6_SPY0852M6_SPY0851M6_SPY0203
SPYO198466 SPYM3_0792SPYM3_0791SPYM3_0143
SPYO193567 SPS0991SPS0991SPS0990SPS0147
SPYO186103 SPYM18_1094SPYM18_1094SPYM18_1093SPYM18_0181
SPYO160490 SPY1134SPY1133SPY0183
SPRO399741 SPRO_1445SPRO_1446SPRO_1447SPRO_3733
SMUT210007 SMU_1095SMU_2119SMU_2116SMU_1063
SMEL266834 SMB21144SMB21145SMB21146SMC00670
SMED366394 SMED_4637SMED_4638SMED_4639SMED_1768
SHIGELLA YEHZYEHYYEHXPROV
SHAE279808 SH2171SH2171SH0606SH2655
SFLE373384 SFV_2207SFV_2206SFV_2205SFV_2826
SFLE198214 AAN43739.1AAN43738.1AAN43737.1AAN44198.1
SERY405948 SACE_0080SACE_0077SACE_0078SACE_2410
SEPI176280 SE_0503SE_0225SE_2018SE_2018
SEPI176279 SERP0386SERP2355SERP2031SERP2031
SENT454169 SEHA_C2399SEHA_C2398SEHA_C2397SEHA_C2992
SENT321314 SCH_2181SCH_2180SCH_2179SCH_2743
SENT295319 SPA0686SPA0687SPA0688SPA2667
SENT220341 STY2395STY2394STY2393STY1573
SENT209261 T0690T0692T0691T1412
SDYS300267 SDY_2157SDY_2160SDY_2872
SCO SCO2933SCO2931SCO1621
SBOY300268 SBO_1013SBO_1014SBO_1015SBO_2839
SAVE227882 SAV5144SAV7406SAV3505SAV6715
SAUR93062 SACOL0783SACOL0783SACOL2453SACOL2453
SAUR93061 SAOUHSC_00732SAOUHSC_00732SAOUHSC_02744SAOUHSC_02744
SAUR426430 NWMN_0691NWMN_0691NWMN_2347NWMN_2347
SAUR418127 SAHV_0720SAHV_0720SAHV_2432SAHV_2432
SAUR367830 SAUSA300_0707SAUSA300_0707SAUSA300_2393SAUSA300_2393
SAUR359787 SAURJH1_0763SAURJH1_0763SAURJH1_2523SAURJH1_2523
SAUR359786 SAURJH9_0746SAURJH9_0746SAURJH9_2475SAURJH9_2475
SAUR282459 SAS0688SAS0688SAS2340SAS2340
SAUR282458 SAR0776SAR0776SAR2538SAR2538
SAUR273036 SAB0672SAB0672SAB2330CSAB2330C
SAUR196620 MW0685MW0685MW2372MW2372
SAUR158879 SA0678SA0678SA2237SA2237
SAUR158878 SAV0723SAV0723SAV2448SAV2448
SARE391037 SARE_1620SARE_4725SARE_1622SARE_3486
SAGA211110 GBS2089GBS0232GBS0235GBS1839
SAGA208435 SAG_2130SAG_0241SAG_0244SAG_1797
SAGA205921 SAK_2069SAK_0300SAK_0303SAK_1818
RXYL266117 RXYL_0580RXYL_0578RXYL_0985RXYL_1555
RSP357808 ROSERS_1816ROSERS_1814ROSERS_1815
RSP101510 RHA1_RO01164RHA1_RO06002RHA1_RO01162
RSOL267608 RSC2516RSC2516RSP0066
RSAL288705 RSAL33209_1900RSAL33209_1899RSAL33209_1898
RRUB269796 RRU_A2385RRU_A2384RRU_A2383RRU_A2475
RPAL316058 RPB_3337RPB_3337RPB_3336
RPAL316057 RPD_2104RPD_2104RPD_2105
RPAL316056 RPC_3244RPC_3244RPC_3243
RPAL316055 RPE_2201RPE_2201RPE_2202
RMET266264 RMET_0800RMET_0801RMET_0802RMET_0802
RLEG216596 RL0512RL0511RL0510PRL100079
RFER338969 RFER_1854RFER_1855RFER_1856
REUT381666 H16_A0941H16_A1588H16_A0943
REUT264198 REUT_A2495REUT_A2494REUT_A2493REUT_B4811
RETL347834 RHE_CH00485RHE_CH00484RHE_CH00483RHE_PF00394
RCAS383372 RCAS_2529RCAS_2531RCAS_2530
PSYR223283 PSPTO_4577PSPTO_4576PSPTO_4575PSPTO_3060
PSYR205918 PSYR_4251PSYR_4250PSYR_4249PSYR_4831
PSP296591 BPRO_3629BPRO_3625BPRO_3624
PPUT76869 PPUTGB1_0914PPUTGB1_0913PPUTGB1_0912PPUTGB1_2693
PPUT351746 PPUT_0900PPUT_0899PPUT_0898PPUT_0314
PPUT160488 PP_0870PP_0869PP_0868PP_0294
PPEN278197 PEPE_0242PEPE_0242PEPE_1655PEPE_1655
PMOB403833 PMOB_1128PMOB_1125PMOB_1126
PMEN399739 PMEN_3115PMEN_3116PMEN_3117PMEN_0487
PFLU220664 PFL_0870PFL_0869PFL_0868PFL_0405
PFLU216595 PFLU0814PFLU0813PFLU0812PFLU0365
PFLU205922 PFL_0805PFL_0804PFL_0803PFL_0364
PENT384676 PSEEN1042PSEEN1041PSEEN1040PSEEN2603
PDIS435591 BDI_0097BDI_0096BDI_0096
PAER208964 PA3889PA3890PA3891PA5094
PAER208963 PA14_13600PA14_13590PA14_13580PA14_67270
PACN267747 PPA0404PPA0407PPA1477
OIHE221109 OB1691OB1691OB1690OB3456
OANT439375 OANT_0299OANT_0298OANT_0297OANT_3889
NWIN323098 NWI_2340NWI_2340NWI_2339
NSP35761 NOCA_0455NOCA_0454NOCA_0452
NSP103690 ALR0974ALR0973ALR0972
NHAM323097 NHAM_2719NHAM_2719NHAM_2718
MXAN246197 MXAN_0597MXAN_2250MXAN_0596MXAN_2249
MVAN350058 MVAN_5601MVAN_5599MVAN_5600MVAN_5600
MTHE264732 MOTH_1685MOTH_1687MOTH_1688MOTH_1688
MSP409 M446_0018M446_0017M446_0478
MSP266779 MESO_2977MESO_2979MESO_2981MESO_2529
MSP189918 MKMS_2540MKMS_5053MKMS_2538
MSP164757 MJLS_2532MJLS_5346MJLS_2530
MSP164756 MMCS_2495MMCS_4965MMCS_2493
MMAZ192952 MM0298MM0296MM0297MM0040
MMAR394221 MMAR10_1070MMAR10_1070MMAR10_1069
MLOT266835 MLR8413MLR8414MLR8415MLL7330
MGIL350054 MFLV_3111MFLV_1209MFLV_3109MFLV_1208
MEXT419610 MEXT_0408MEXT_0409MEXT_3731
MBUR259564 MBUR_0489MBUR_0487MBUR_0488MBUR_0501
MABS561007 MAB_1228MAB_1226MAB_1226
LWEL386043 LWE1439LWE1439LWE1445LWE0998
LSPH444177 BSPH_2295BSPH_2295BSPH_2294BSPH_1748
LSAK314315 LSA1869LSA1869LSA0616LSA1696
LPLA220668 LP_0367LP_0367LP_1607LP_1607
LMON265669 LMOF2365_1441LMOF2365_1441LMOF2365_1447LMOF2365_1035
LMON169963 LMO1422LMO1422LMO1428LMO1014
LMES203120 LEUM_1017LEUM_1017LEUM_1018LEUM_0357
LLAC272623 L65675L64737L74195
LLAC272622 LACR_0914LACR_0913LACR_1542
LJOH257314 LJ_1591LJ_1592LJ_1592
LINN272626 LIN1461LIN1461LIN1467LIN1013
LGAS324831 LGAS_0705LGAS_0704LGAS_0704
LDEL390333 LDB1180LDB1180LDB1181
LDEL321956 LBUL_1097LBUL_1097LBUL_1098
LCAS321967 LSEI_2629LSEI_2629LSEI_0066LSEI_2145
LBRE387344 LVIS_0257LVIS_0292LVIS_0295
KPNE272620 GKPORF_B1851GKPORF_B1850GKPORF_B1849GKPORF_B2335
HCHE349521 HCH_00162HCH_00161HCH_00160HCH_01361
HAUR316274 HAUR_0350HAUR_0352HAUR_0351
GVIO251221 GLR0890GLR0890GLR2248
GTHE420246 GTNG_0277GTNG_0276GTNG_0276
GKAU235909 GK0315GK0314GK0314
FALN326424 FRAAL6729FRAAL6727FRAAL6726
ESP42895 ENT638_2730ENT638_2729ENT638_2728ENT638_3157
ELIT314225 ELI_11800ELI_11800ELI_11795
EFER585054 EFER_2218EFER_2217EFER_2216EFER_0393
EFAE226185 EF_0675EF_0862EF_0865EF_2641
ECOO157 YEHZYEHYYEHXPROV
ECOL83334 ECS3018ECS3017ECS3016ECS3540
ECOL585397 ECED1_2575ECED1_2574ECED1_2573ECED1_3132
ECOL585057 ECIAI39_0865ECIAI39_0866ECIAI39_0867ECIAI39_2867
ECOL585056 ECUMN_2465ECUMN_2464ECUMN_2463ECUMN_3003
ECOL585055 EC55989_2381EC55989_2380EC55989_2379EC55989_2945
ECOL585035 ECS88_2275ECS88_2274ECS88_2273ECS88_2943
ECOL585034 ECIAI1_2209ECIAI1_2208ECIAI1_2207ECIAI1_2773
ECOL481805 ECOLC_1516ECOLC_1517ECOLC_1518ECOLC_1029
ECOL469008 ECBD_1527ECBD_1528ECBD_1529ECBD_1042
ECOL439855 ECSMS35_0913ECSMS35_0914ECSMS35_0915ECSMS35_2799
ECOL413997 ECB_02061ECB_02060ECB_02059ECB_02533
ECOL409438 ECSE_2399ECSE_2398ECSE_2397ECSE_2930
ECOL405955 APECO1_4418APECO1_4419APECO1_4420APECO1_3844
ECOL364106 UTI89_C2404UTI89_C2403UTI89_C2402UTI89_C3037
ECOL362663 ECP_2170ECP_2169ECP_2168ECP_2643
ECOL331111 ECE24377A_2420ECE24377A_2419ECE24377A_2418ECE24377A_2958
ECOL316407 ECK2124:JW2119:B2131ECK2123:JW2118:B2130ECK2122:JW2117:B2129ECK2671:JW2652:B2677
ECOL199310 C2661C2660C2659C3230
DRAD243230 DR_A0135DR_A0136DR_A0137DR_A0137
DHAF138119 DSY1656DSY1657DSY1658DSY1221
DGEO319795 DGEO_0174DGEO_0173DGEO_0172
CVIO243365 CV_4392CV_4393CV_4394
CTET212717 CTC_00373CTC_00373CTC_00374CTC_02342
CSP78 CAUL_1376CAUL_1376CAUL_1375
CSP501479 CSE45_4996CSE45_4995CSE45_4994CSE45_0744
CSAL290398 CSAL_2943CSAL_2944CSAL_2945CSAL_1903
CPHY357809 CPHY_0119CPHY_0119CPHY_0118CPHY_0118
CPER289380 CPR_0522CPR_0522CPR_0521CPR_0521
CPER195103 CPF_0538CPF_0538CPF_0537CPF_0537
CPER195102 CPE0558CPE0558CPE0557CPE0557
CNOV386415 NT01CX_0628NT01CX_0628NT01CX_0629NT01CX_0629
CMIC443906 CMM_1703CMM_1530CMM_1701CMM_1529
CMIC31964 CMS1660CMS1775CMS1776CMS1776
CKLU431943 CKL_2796CKL_2796CKL_2797CKL_0777
CEFF196164 CE0165CE0167CE0168
CDIF272563 CD0901CD0901CD0900CD0900
CBUR434922 COXBU7E912_1923COXBU7E912_1923COXBU7E912_1922
CBUR360115 COXBURSA331_A0267COXBURSA331_A0267COXBURSA331_A0268
CBUR227377 CBU_0177CBU_0177CBU_0178
CBOT536232 CLM_1878CLM_1878CLM_1877CLM_1877
CBOT515621 CLJ_B1746CLJ_B1746CLJ_B1745CLJ_B1745
CBOT508765 CLL_A2925CLL_A2925CLL_A2926CLL_A2926
CBOT498213 CLD_2918CLD_2918CLD_2919CLD_2919
CBOT441772 CLI_1714CLI_1714CLI_1713CLI_1713
CBOT441771 CLC_1663CLC_1663CLC_1662CLC_1662
CBOT441770 CLB_1654CLB_1654CLB_1653CLB_1653
CBOT36826 CBO1637CBO1637CBO1636CBO1636
CBEI290402 CBEI_3541CBEI_3542CBEI_2871CBEI_2871
CACE272562 CAC1474CAC2849CAC1475CAC2850
BXEN266265 BXE_B2994BXE_B2993BXE_B2992BXE_B1616
BWEI315730 BCERKBAB4_2100BCERKBAB4_2100BCERKBAB4_2099BCERKBAB4_2591
BVIE269482 BCEP1808_3450BCEP1808_3451BCEP1808_3452BCEP1808_3472
BTHU412694 BALH_2042BALH_2042BALH_2040BALH_2503
BTHU281309 BT9727_2064BT9727_2064BT9727_2063BT9727_2549
BTHA271848 BTH_I2378BTH_I2379BTH_I2380BTH_II0966
BSUI470137 BSUIS_A0225BSUIS_A0224BSUIS_A0223BSUIS_B0732
BSUI204722 BR_0225BR_0224BR_0223BR_A0740
BSUB BSU33810BSU33720BSU33830BSU02980
BSP376 BRADO5551BRADO5551BRADO5550
BSP36773 BCEP18194_B0499BCEP18194_B0498BCEP18194_B0497BCEP18194_B0455
BPUM315750 BPUM_3716BPUM_3716BPUM_3043BPUM_0270
BPSE320373 BURPS668_1976BURPS668_1975BURPS668_1974BURPS668_A2027
BPSE320372 BURPS1710B_A2303BURPS1710B_A2302BURPS1710B_A2301BURPS1710B_B0548
BPSE272560 BPSL1737BPSL1738BPSL1739BPSS1426
BOVI236 GBOORF0227GBOORF0226GBOORF0225GBOORFA0762
BMEL359391 BAB1_0226BAB1_0225BAB1_0224BAB2_0500
BMEL224914 BMEI1725BMEI1726BMEI1727BMEII0548
BMAL320389 BMA10247_0922BMA10247_0921BMA10247_0920BMA10247_A1870
BMAL320388 BMASAVP1_A1578BMASAVP1_A1579BMASAVP1_A1580
BMAL243160 BMA_1138BMA_1139BMA_1140BMA_A0564
BLIC279010 BL03476BL03477BL03474BL01559
BJAP224911 BLR6490BLR6490BLR6489
BFRA295405 BF3335BF3336BF3336
BFRA272559 BF3171BF3172BF3172
BCLA66692 ABC1991ABC1991ABC3029ABC1071
BCER572264 BCA_2362BCA_2362BCA_2361BCA_2870
BCER405917 BCE_2314BCE_2314BCE_2313BCE_2816
BCER288681 BCE33L2060BCE33L2060BCE33L2059BCE33L2516
BCER226900 BC_2233BC_2233BC_2232BC_2791
BCEN331272 BCEN2424_5141BCEN2424_5142BCEN2424_5143BCEN2424_5172
BCEN331271 BCEN_3226BCEN_3225BCEN_3224BCEN_3195
BCAN483179 BCAN_A0228BCAN_A0227BCAN_A0226BCAN_B0748
BANT592021 BAA_2345BAA_2345BAA_2344BAA_2849
BANT568206 BAMEG_2313BAMEG_2313BAMEG_2314BAMEG_1810
BANT261594 GBAA2280GBAA2280GBAA2279GBAA2786
BANT260799 BAS2126BAS2126BAS2125BAS2597
BAMY326423 RBAM_031080RBAM_031070RBAM_031050RBAM_003220
BAMB398577 BAMMC406_5059BAMMC406_5060BAMMC406_5061BAMMC406_5092
BAMB339670 BAMB_4535BAMB_4536BAMB_4537BAMB_4567
BABO262698 BRUAB1_0220BRUAB1_0219BRUAB1_0218BRUAB1_1568
AVAR240292 AVA_2959AVA_2960AVA_2961
ASP1667 ARTH_2839ARTH_2841ARTH_2842ARTH_2842
ANAE240017 ANA_0264ANA_0260ANA_1635
AMAR329726 AM1_3661AM1_0666AM1_0658
AFUL224325 AF_0982AF_0980AF_0981AF_0981
AAUR290340 AAUR_0647AAUR_0644AAUR_0645AAUR_2817


Organism features enriched in list (features available for 234 out of the 249 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 2.348e-65792
Arrangment:Clusters 3.458e-61617
Arrangment:Pairs 2.948e-1176112
Disease:Bubonic_plague 0.004021966
Disease:Dysentery 0.004021966
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 0.00003771111
Disease:Wide_range_of_infections 0.00003771111
Endospores:Yes 1.168e-94253
GC_Content_Range4:0-40 0.009167874213
GC_Content_Range4:60-100 0.000380975145
GC_Content_Range7:40-50 0.009183137117
GC_Content_Range7:60-70 0.001430168134
Genome_Size_Range5:0-2 1.665e-1720155
Genome_Size_Range5:4-6 1.023e-6100184
Genome_Size_Range5:6-10 4.265e-124147
Genome_Size_Range9:1-2 1.593e-1120128
Genome_Size_Range9:5-6 0.00001905388
Genome_Size_Range9:6-8 9.313e-93238
Genome_Size_Range9:8-10 0.000246299
Gram_Stain:Gram_Neg 1.009e-6106333
Gram_Stain:Gram_Pos 1.310e-23112150
Habitat:Aquatic 5.921e-91391
Habitat:Host-associated 0.008356671206
Habitat:Multiple 1.330e-8102178
Habitat:Specialized 0.00253551253
Habitat:Terrestrial 0.00001382431
Optimal_temp.:- 0.008013891257
Optimal_temp.:25-30 0.00803731319
Optimal_temp.:30-37 4.872e-81818
Oxygen_Req:Aerobic 0.003962461185
Oxygen_Req:Anaerobic 0.001298128102
Oxygen_Req:Facultative 1.088e-14124201
Oxygen_Req:Microaerophilic 0.0010319118
Pathogenic_in:Human 6.675e-7113213
Shape:Coccus 0.00031264782
Shape:Rod 0.0000597161347
Shape:Sphere 0.0040428219
Shape:Spiral 3.380e-7134
Temp._range:Hyperthermophilic 0.0000912123
Temp._range:Mesophilic 1.390e-7213473



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 334
Effective number of orgs (counting one per cluster within 468 clusters): 288

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM40
XFAS405440 ncbi Xylella fastidiosa M120
XFAS183190 ncbi Xylella fastidiosa Temecula10
XFAS160492 ncbi Xylella fastidiosa 9a5c0
XAUT78245 ncbi Xanthobacter autotrophicus Py20
WSUC273121 ncbi Wolinella succinogenes DSM 17400
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
VVUL216895 ncbi Vibrio vulnificus CMCP61
VVUL196600 ncbi Vibrio vulnificus YJ0161
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106331
VFIS312309 ncbi Vibrio fischeri ES1141
VCHO345073 ncbi Vibrio cholerae O3950
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169610
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTUR377629 ncbi Teredinibacter turnerae T79010
TTHE300852 ncbi Thermus thermophilus HB80
TTHE262724 ncbi Thermus thermophilus HB270
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB40
TSP28240 Thermotoga sp.0
TROS309801 ncbi Thermomicrobium roseum DSM 51590
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332230
TPET390874 ncbi Thermotoga petrophila RKU-10
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TMAR243274 ncbi Thermotoga maritima MSB80
TLET416591 ncbi Thermotoga lettingae TMO0
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TFUS269800 ncbi Thermobifida fusca YX1
TERY203124 ncbi Trichodesmium erythraeum IMS1011
TELO197221 ncbi Thermosynechococcus elongatus BP-10
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12510
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252590
TDEN243275 ncbi Treponema denticola ATCC 354050
TCRU317025 ncbi Thiomicrospira crunogena XCL-20
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen1
STOK273063 ncbi Sulfolobus tokodaii 70
STHE322159 ncbi Streptococcus thermophilus LMD-90
SSP94122 ncbi Shewanella sp. ANA-31
SSP84588 ncbi Synechococcus sp. WH 81021
SSP64471 ncbi Synechococcus sp. CC93110
SSP644076 Silicibacter sp. TrichCH4B0
SSP387093 ncbi Sulfurovum sp. NBC37-10
SSP292414 ncbi Ruegeria sp. TM10400
SSP1148 ncbi Synechocystis sp. PCC 68030
SSP1131 Synechococcus sp. CC96050
SSOL273057 ncbi Sulfolobus solfataricus P20
SSED425104 ncbi Shewanella sediminis HAW-EB31
SPEA398579 ncbi Shewanella pealeana ATCC 7003451
SONE211586 ncbi Shewanella oneidensis MR-10
SMAR399550 ncbi Staphylothermus marinus F10
SLOI323850 ncbi Shewanella loihica PV-40
SHAL458817 ncbi Shewanella halifaxensis HAW-EB41
SGLO343509 ncbi Sodalis glossinidius morsitans1
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB0
SELO269084 ncbi Synechococcus elongatus PCC 63011
SDEN318161 ncbi Shewanella denitrificans OS2170
SDEG203122 ncbi Saccharophagus degradans 2-400
SBAL402882 ncbi Shewanella baltica OS1851
SBAL399599 ncbi Shewanella baltica OS1951
SALA317655 ncbi Sphingopyxis alaskensis RB22560
SACI56780 ncbi Syntrophus aciditrophicus SB0
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RTYP257363 ncbi Rickettsia typhi Wilmington0
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170251
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170291
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.11
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RMAS416276 ncbi Rickettsia massiliae MTU50
RFEL315456 ncbi Rickettsia felis URRWXCal20
RDEN375451 ncbi Roseobacter denitrificans OCh 1141
RCON272944 ncbi Rickettsia conorii Malish 70
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RALB246199 Ruminococcus albus 80
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97900
PTHE370438 ncbi Pelotomaculum thermopropionicum SI0
PSTU379731 ncbi Pseudomonas stutzeri A15010
PSP56811 Psychrobacter sp.1
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-10
PSP117 Pirellula sp.0
PRUM264731 ncbi Prevotella ruminicola 230
PNAP365044 ncbi Polaromonas naphthalenivorans CJ20
PMUL272843 ncbi Pasteurella multocida multocida Pm700
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74547 ncbi Prochlorococcus marinus MIT 93131
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR59920 ncbi Prochlorococcus marinus NATL2A0
PMAR167555 ncbi Prochlorococcus marinus NATL1A0
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13750
PMAR146891 ncbi Prochlorococcus marinus AS96010
PLUT319225 ncbi Chlorobium luteolum DSM 2730
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO11
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 170
PING357804 ncbi Psychromonas ingrahamii 371
PHOR70601 ncbi Pyrococcus horikoshii OT30
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1250
PGIN242619 ncbi Porphyromonas gingivalis W830
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PCRY335284 ncbi Psychrobacter cryohalolentis K51
PCAR338963 ncbi Pelobacter carbinolicus DSM 23800
PATL342610 ncbi Pseudoalteromonas atlantica T6c0
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PARC259536 ncbi Psychrobacter arcticus 273-40
PAER178306 ncbi Pyrobaculum aerophilum IM20
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
OCAR504832 ncbi Oligotropha carboxidovorans OM50
NSP387092 ncbi Nitratiruptor sp. SB155-20
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
NMUL323848 ncbi Nitrosospira multiformis ATCC 251960
NMEN374833 ncbi Neisseria meningitidis 0534420
NMEN272831 ncbi Neisseria meningitidis FAM180
NMEN122587 ncbi Neisseria meningitidis Z24910
NMEN122586 ncbi Neisseria meningitidis MC580
NGON242231 ncbi Neisseria gonorrhoeae FA 10900
NEUT335283 ncbi Nitrosomonas eutropha C910
NEUR228410 ncbi Nitrosomonas europaea ATCC 197180
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124440
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MSYN262723 ncbi Mycoplasma synoviae 530
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E1
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSP400668 ncbi Marinomonas sp. MWYL11
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPET420662 ncbi Methylibium petroleiphilum PM10
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAR444158 ncbi Methanococcus maripaludis C61
MMAR426368 ncbi Methanococcus maripaludis C71
MMAR402880 ncbi Methanococcus maripaludis C51
MMAR368407 ncbi Methanoculleus marisnigri JR11
MMAR267377 ncbi Methanococcus maripaludis S21
MMAG342108 ncbi Magnetospirillum magneticum AMB-10
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z1
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MFLA265072 ncbi Methylobacillus flagellatus KT0
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MCAP243233 ncbi Methylococcus capsulatus Bath0
MBAR269797 ncbi Methanosarcina barkeri Fusaro1
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAQU351348 ncbi Marinobacter aquaeolei VT80
MAER449447 ncbi Microcystis aeruginosa NIES-8431
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A1
LPNE400673 ncbi Legionella pneumophila Corby0
LPNE297246 ncbi Legionella pneumophila Paris0
LPNE297245 ncbi Legionella pneumophila Lens0
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 10
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-000
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1300
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566010
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LCHO395495 ncbi Leptothrix cholodnii SP-60
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1970
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5500
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)0
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)0
LACI272621 ncbi Lactobacillus acidophilus NCFM0
JSP375286 ncbi Janthinobacterium sp. Marseille0
JSP290400 ncbi Jannaschia sp. CCS11
ILOI283942 ncbi Idiomarina loihiensis L2TR0
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-11
HSOM228400 ncbi Haemophilus somnus 23360
HSOM205914 ncbi Haemophilus somnus 129PT0
HSAL478009 ncbi Halobacterium salinarum R11
HNEP81032 Hyphomonas neptunium0
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMOD498761 ncbi Heliobacterium modesticaldum Ice10
HMAR272569 ncbi Haloarcula marismortui ATCC 430490
HINF71421 ncbi Haemophilus influenzae Rd KW200
HINF374930 ncbi Haemophilus influenzae PittEE0
HINF281310 ncbi Haemophilus influenzae 86-028NP0
HHEP235279 ncbi Helicobacter hepaticus ATCC 514490
HHAL349124 ncbi Halorhodospira halophila SL11
HDUC233412 ncbi Haemophilus ducreyi 35000HP0
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HARS204773 ncbi Herminiimonas arsenicoxydans0
GURA351605 ncbi Geobacter uraniireducens Rf40
GSUL243231 ncbi Geobacter sulfurreducens PCA1
GOXY290633 ncbi Gluconobacter oxydans 621H0
GMET269799 ncbi Geobacter metallireducens GS-151
GFOR411154 ncbi Gramella forsetii KT08030
GBET391165 ncbi Granulibacter bethesdensis CGDNIH11
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-000
FTUL418136 ncbi Francisella tularensis tularensis WY96-34180
FTUL401614 ncbi Francisella novicida U1120
FTUL393115 ncbi Francisella tularensis tularensis FSC1980
FTUL393011 ncbi Francisella tularensis holarctica OSU180
FTUL351581 Francisella tularensis holarctica FSC2000
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S850
FSP1855 Frankia sp. EAN1pec1
FSP106370 ncbi Frankia sp. CcI30
FRANT ncbi Francisella tularensis tularensis SCHU S40
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250170
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B10
FMAG334413 ncbi Finegoldia magna ATCC 293280
FJOH376686 ncbi Flavobacterium johnsoniae UW1010
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10431
ECAN269484 ncbi Ehrlichia canis Jake0
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough1
DSP255470 ncbi Dehalococcoides sp. CBDB10
DSP216389 ncbi Dehalococcoides sp. BAV10
DSHI398580 ncbi Dinoroseobacter shibae DFL 121
DRED349161 ncbi Desulfotomaculum reducens MI-11
DPSY177439 ncbi Desulfotalea psychrophila LSv541
DOLE96561 ncbi Desulfococcus oleovorans Hxd31
DNOD246195 ncbi Dichelobacter nodosus VCS1703A0
DETH243164 ncbi Dehalococcoides ethenogenes 1950
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G201
DARO159087 ncbi Dechloromonas aromatica RCB0
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA0
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTEP194439 ncbi Chlorobium tepidum TLS0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)0
CPSY167879 ncbi Colwellia psychrerythraea 34H1
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE250
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10621
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CJEJ407148 ncbi Campylobacter jejuni jejuni 811160
CJEJ360109 ncbi Campylobacter jejuni doylei 269.970
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1760
CJEJ195099 ncbi Campylobacter jejuni RM12210
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111680
CJEI306537 ncbi Corynebacterium jeikeium K4110
CJAP155077 Cellvibrio japonicus0
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29010
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334060
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3810
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130320
CFET360106 ncbi Campylobacter fetus fetus 82-400
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C0
CCUR360105 ncbi Campylobacter curvus 525.920
CCON360104 ncbi Campylobacter concisus 138260
CCHL340177 ncbi Chlorobium chlorochromatii CaD30
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN0
CBLO203907 ncbi Candidatus Blochmannia floridanus0
CAULO ncbi Caulobacter crescentus CB150
CABO218497 ncbi Chlamydophila abortus S26/30
BTUR314724 ncbi Borrelia turicatae 91E1351
BTRI382640 ncbi Bartonella tribocorum CIP 1054760
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54821
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)0
BQUI283165 ncbi Bartonella quintana Toulouse0
BPET94624 Bordetella petrii1
BPER257313 ncbi Bordetella pertussis Tohama I1
BPAR257311 ncbi Bordetella parapertussis 128221
BLON206672 ncbi Bifidobacterium longum NCC27050
BHER314723 ncbi Borrelia hermsii DAH1
BHEN283166 ncbi Bartonella henselae Houston-11
BHAL272558 ncbi Bacillus halodurans C-1250
BGAR290434 ncbi Borrelia garinii PBi1
BCIC186490 Candidatus Baumannia cicadellinicola0
BCER315749 ncbi Bacillus cytotoxicus NVH 391-981
BBUR224326 ncbi Borrelia burgdorferi B311
BBRO257310 ncbi Bordetella bronchiseptica RB501
BBAC360095 ncbi Bartonella bacilliformis KC5830
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1000
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)0
BAFZ390236 ncbi Borrelia afzelii PKo1
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP76114 ncbi Aromatoleum aromaticum EbN10
ASP62977 ncbi Acinetobacter sp. ADP10
ASP62928 ncbi Azoarcus sp. BH720
ASP232721 ncbi Acidovorax sp. JS421
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4491
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL030
APLE416269 ncbi Actinobacillus pleuropneumoniae L200
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K10
AORE350688 ncbi Alkaliphilus oremlandii OhILAs1
AMET293826 ncbi Alkaliphilus metalliredigens QYMF1
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AHYD196024 Aeromonas hydrophila dhakensis1
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232700
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-11
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C0
ACRY349163 ncbi Acidiphilium cryptum JF-51
ACEL351607 ncbi Acidothermus cellulolyticus 11B0
ACAU438753 ncbi Azorhizobium caulinodans ORS 5711
ABUT367737 ncbi Arcobacter butzleri RM40180
ABOR393595 ncbi Alcanivorax borkumensis SK20
ABAU360910 ncbi Bordetella avium 197N1
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3450
AAVE397945 ncbi Acidovorax citrulli AAC00-11
AAEO224324 ncbi Aquifex aeolicus VF50


Names of the homologs of the genes in the group in each of these orgs
  EG12012   EG12011   EG12010   EG10771   
ZMOB264203
XFAS405440
XFAS183190
XFAS160492
XAUT78245
WSUC273121
WPIP955
WPIP80849
VVUL216895 VV2_0002
VVUL196600 VVA0511
VPAR223926 VP1726
VFIS312309 VF0787
VCHO345073
VCHO
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496
TWHI203267
TVOL273116
TTUR377629
TTHE300852
TTHE262724
TTEN273068
TSP28240
TROS309801
TPSE340099
TPET390874
TPEN368408
TPAL243276
TMAR243274
TLET416591
TKOD69014
TFUS269800 TFU_2930
TERY203124 TERY_4109
TELO197221
TDEN326298
TDEN292415
TDEN243275
TCRU317025
TACI273075
SWOL335541 SWOL_1737
STOK273063
STHE322159
SSP94122 SHEWANA3_3192
SSP84588 SYNW1915OR0720
SSP64471
SSP644076
SSP387093
SSP292414
SSP1148
SSP1131
SSOL273057
SSED425104 SSED_4237
SPEA398579 SPEA_0255
SONE211586
SMAR399550
SLOI323850
SHAL458817 SHAL_4044
SGLO343509 SG1706
SFUM335543
SELO269084 SYC2410_D
SDEN318161
SDEG203122
SBAL402882 SHEW185_2028
SBAL399599 SBAL195_2076
SALA317655
SACI56780
SACI330779
RTYP257363
RSPH349102 RSPH17025_2830
RSPH349101 RSPH17029_3785
RSPH272943 RSP_4000
RRIC452659
RRIC392021
RPRO272947
RMAS416276
RFEL315456
RDEN375451 RD1_2932
RCON272944
RCAN293613
RBEL391896
RBEL336407
RALB246199
RAKA293614
PTOR263820
PTHE370438
PSTU379731
PSP56811 PSYCPRWF_1375
PSP312153
PSP117
PRUM264731
PNAP365044
PMUL272843
PMAR93060
PMAR74547 PMT0553
PMAR74546
PMAR59920
PMAR167555
PMAR167546
PMAR167542
PMAR167540
PMAR167539
PMAR146891
PLUT319225
PLUM243265 PLU1283
PISL384616
PINT246198
PING357804 PING_0616
PHOR70601
PHAL326442
PGIN242619
PFUR186497
PCRY335284 PCRYO_1087
PCAR338963
PATL342610
PAST100379
PARS340102
PARC259536
PAER178306
PABY272844
OTSU357244
OCAR504832
NSP387092
NSEN222891
NPHA348780
NMUL323848
NMEN374833
NMEN272831
NMEN122587
NMEN122586
NGON242231
NEUT335283
NEUR228410
NARO279238
MTHE349307
MTHE187420
MSYN262723
MSUC221988 MS0549
MSTA339860
MSP400668 MMWYL1_3516
MSED399549
MPUL272635
MPNE272634
MPET420662
MPEN272633
MMYC272632
MMOB267748
MMAR444158 MMARC6_1788
MMAR426368 MMARC7_0113
MMAR402880 MMARC5_0673
MMAR368407 MEMAR_0994
MMAR267377 MMP0868
MMAG342108
MLEP272631
MLAB410358 MLAB_1060
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGEN243273
MFLO265311
MFLA265072
MCAP340047
MCAP243233
MBAR269797 MBAR_A2376
MART243272
MAQU351348
MAER449447 MAE_28360
MAEO419665
MACE188937 MA2145
LPNE400673
LPNE297246
LPNE297245
LPNE272624
LINT363253
LINT267671
LINT189518
LHEL405566
LCHO395495
LBOR355277
LBOR355276
LBIF456481
LBIF355278
LACI272621
JSP375286
JSP290400 JANN_1501
ILOI283942
IHOS453591
HWAL362976
HSP64091 VNG1762G
HSOM228400
HSOM205914
HSAL478009 OE3476R
HNEP81032
HMUK485914
HMOD498761
HMAR272569
HINF71421
HINF374930
HINF281310
HHEP235279
HHAL349124 HHAL_0233
HDUC233412
HBUT415426
HARS204773
GURA351605
GSUL243231 GSU_1349
GOXY290633
GMET269799 GMET_1903
GFOR411154
GBET391165 GBCGDNIH1_0086
FTUL458234
FTUL418136
FTUL401614
FTUL393115
FTUL393011
FTUL351581
FSUC59374
FSP1855 FRANEAN1_0156
FSP106370
FRANT
FPHI484022
FNOD381764
FMAG334413
FJOH376686
ERUM302409
ERUM254945
ECHA205920
ECAR218491 ECA3502
ECAN269484
DVUL882 DVU_2299
DSP255470
DSP216389
DSHI398580 DSHI_1437
DRED349161 DRED_3209
DPSY177439 DP0206
DOLE96561 DOLE_2765
DNOD246195
DETH243164
DDES207559 DDE_0673
DARO159087
CVES412965
CTRA471473
CTRA471472
CTEP194439
CSUL444179
CRUT413404
CPSY167879 CPS_4935
CPRO264201
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPEL335992 SAR11_0798
CMUR243161
CMET456442
CMAQ397948
CKOR374847
CJEJ407148
CJEJ360109
CJEJ354242
CJEJ195099
CJEJ192222
CJEI306537
CJAP155077
CHYD246194
CHUT269798
CHOM360107
CGLU196627
CFET360106
CFEL264202
CDES477974
CCUR360105
CCON360104
CCHL340177
CCAV227941
CBLO291272
CBLO203907
CAULO
CABO218497
BTUR314724 BT0146
BTRI382640
BTHE226186 BT_1751
BSP107806
BQUI283165
BPET94624 BPET3308
BPER257313 BP2057
BPAR257311 BPP1742
BLON206672
BHER314723 BH0146
BHEN283166 BH12930
BHAL272558
BGAR290434 BG0146
BCIC186490
BCER315749 BCER98_1908
BBUR224326 BB_0146
BBRO257310 BB3366
BBAC360095
BBAC264462
BAPH372461
BAPH198804
BAFZ390236 BAPKO_0148
AYEL322098
AURANTIMONAS
ASP76114
ASP62977
ASP62928
ASP232721 AJS_1065
ASAL382245 ASA_0933
APLE434271
APLE416269
APHA212042
APER272557
AORE350688 CLOS_2021
AMET293826 AMET_2808
AMAR234826
ALAI441768
AHYD196024 AHA_3376
AFER243159
AEHR187272 MLG_0732
ADEH290397
ACRY349163 ACRY_0989
ACEL351607
ACAU438753 AZC_1187
ABUT367737
ABOR393595
ABAU360910 BAV2478
ABAC204669
AAVE397945 AAVE_1497
AAEO224324


Organism features enriched in list (features available for 313 out of the 334 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 1.795e-62992
Arrangment:Pairs 1.607e-932112
Disease:Pharyngitis 0.006619088
Disease:bronchitis_and_pneumonitis 0.006619088
Endospores:Yes 4.721e-81053
GC_Content_Range4:0-40 0.0043151128213
GC_Content_Range4:40-60 0.0043503134224
GC_Content_Range4:60-100 4.495e-850145
GC_Content_Range7:40-50 0.000277379117
GC_Content_Range7:60-70 1.108e-648134
Genome_Size_Range5:0-2 4.418e-19129155
Genome_Size_Range5:4-6 2.376e-966184
Genome_Size_Range5:6-10 7.996e-13347
Genome_Size_Range9:0-1 2.957e-82727
Genome_Size_Range9:1-2 4.883e-12102128
Genome_Size_Range9:4-5 0.00092033896
Genome_Size_Range9:5-6 4.216e-62888
Genome_Size_Range9:6-8 8.822e-10338
Gram_Stain:Gram_Neg 1.696e-7209333
Gram_Stain:Gram_Pos 2.404e-3022150
Habitat:Aquatic 8.463e-117691
Habitat:Multiple 1.766e-865178
Habitat:Specialized 0.00037544053
Habitat:Terrestrial 0.0002353731
Motility:No 0.008427870151
Optimal_temp.:- 0.0011567155257
Optimal_temp.:25-30 0.0000820219
Optimal_temp.:35-37 0.00027371313
Optimal_temp.:37 0.000988843106
Oxygen_Req:Anaerobic 0.000025773102
Oxygen_Req:Facultative 4.504e-1367201
Oxygen_Req:Microaerophilic 0.00137501618
Pathogenic_in:Human 7.547e-884213
Pathogenic_in:No 0.0007245139226
Shape:Coccus 0.00015442982
Shape:Pleomorphic 0.006619088
Shape:Rod 6.739e-6161347
Shape:Sphere 0.00413061619
Shape:Spiral 0.00005862934
Temp._range:Hyperthermophilic 8.862e-62223
Temp._range:Mesophilic 3.909e-8229473



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
IDNCAT-PWY (L-idonate degradation)2461720.4939
PWY0-1314 (fructose degradation)2241540.4403
TREDEGLOW-PWY (trehalose degradation I (low osmolarity))1211000.4277
PWY0-381 (glycerol degradation I)4172270.4203
PWY-3722 (glycine betaine biosynthesis II (Gram-positive bacteria))1411090.4123
PWY-5676 (acetyl-CoA fermentation to butyrate II)2841750.4046
GLUAMCAT-PWY (N-acetylglucosamine degradation I)3562030.4020



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG12011   EG12010   EG10771   
EG120120.9999030.9999170.998682
EG120110.9998610.998646
EG120100.999077
EG10771



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PAIRWISE BLAST SCORES:

  EG12012   EG12011   EG12010   EG10771   
EG120120.0f0---
EG12011-0.0f0--
EG12010--0.0f0-
EG10771---0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- ABC-40-CPLX (YehW/YehX/YehY/YehZ ABC transporter) (degree of match pw to cand: 0.750, degree of match cand to pw: 0.750, average score: 1.000)
  Genes in pathway or complex:
   *in cand* 0.9996 0.9986 EG12011 (yehY) YEHY-MONOMER (YehY)
             0.9995 0.9984 EG12009 (yehW) YEHW-MONOMER (YehW)
   *in cand* 0.9997 0.9991 EG12010 (yehX) YEHX-MONOMER (YehX)
   *in cand* 0.9996 0.9987 EG12012 (osmF) YEHZ-MONOMER (OsmF)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9991 0.9986 EG10771 (proV) PROV-MONOMER (ProV)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG12010 EG12011 EG12012 (centered at EG12011)
EG10771 (centered at EG10771)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  EG12012   EG12011   EG12010   EG10771   
286/623238/623284/623278/623
AAUR290340:2:Tyes3012116
AAVE397945:0:Tyes---0
ABAU360910:0:Tyes---0
ACAU438753:0:Tyes---0
ACRY349163:8:Tyes---0
AEHR187272:0:Tyes---0
AFUL224325:0:Tyes2011
AHYD196024:0:Tyes---0
AMAR329726:9:Tyes297280-
AMET293826:0:Tyes---0
ANAE240017:0:Tyes3-01258
AORE350688:0:Tyes---0
ASAL382245:5:Tyes---0
ASP1667:3:Tyes0233
ASP232721:2:Tyes---0
AVAR240292:3:Tyes012-
BABO262698:1:Tno2101292
BAFZ390236:2:Fyes---0
BAMB339670:2:Tno01232
BAMB398577:2:Tno01233
BAMY326423:0:Tyes2784278327810
BANT260799:0:Tno110469
BANT261594:2:Tno110470
BANT568206:2:Tyes5005005010
BANT592021:2:Tno110502
BBRO257310:0:Tyes---0
BBUR224326:21:Fno---0
BCAN483179:0:Tno---0
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