CANDIDATE ID: 933

CANDIDATE ID: 933

NUMBER OF GENES: 4
AVERAGE SCORE:    9.9940433e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    5.0000000e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G6575 (lolE) (b1118)
   Products of gene:
     - YCFW-MONOMER (LolE)
     - ABC-62-CPLX (LolCDE ABC lipoprotein transporter)

- G6574 (lolD) (b1117)
   Products of gene:
     - YCFV-MONOMER (LolD)
     - ABC-62-CPLX (LolCDE ABC lipoprotein transporter)

- G6573 (lolC) (b1116)
   Products of gene:
     - YCFU-MONOMER (LolC)
     - ABC-62-CPLX (LolCDE ABC lipoprotein transporter)

- EG10721 (phnL) (b4096)
   Products of gene:
     - PHNL-MONOMER (PhnL)
       Reactions:
        EC# 4.99.1.-



Back to top


ORGANISMS CONTAINING AT LEAST 3 GENES FROM THE GROUP:

Total number of orgs: 269
Effective number of orgs (counting one per cluster within 468 clusters): 192

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317584
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329534
YPES386656 ncbi Yersinia pestis Pestoides F4
YPES377628 ncbi Yersinia pestis Nepal5164
YPES360102 ncbi Yersinia pestis Antiqua4
YPES349746 ncbi Yersinia pestis Angola4
YPES214092 ncbi Yersinia pestis CO924
YPES187410 ncbi Yersinia pestis KIM 104
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80814
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A3
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110183
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103313
XFAS405440 ncbi Xylella fastidiosa M123
XFAS183190 ncbi Xylella fastidiosa Temecula13
XFAS160492 ncbi Xylella fastidiosa 9a5c3
XCAM487884 Xanthomonas campestris pv. paulliniae3
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-103
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80043
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339133
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3063
XAUT78245 ncbi Xanthobacter autotrophicus Py24
VVUL216895 ncbi Vibrio vulnificus CMCP64
VVUL196600 ncbi Vibrio vulnificus YJ0164
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106334
VFIS312309 ncbi Vibrio fischeri ES1144
VEIS391735 ncbi Verminephrobacter eiseniae EF01-24
VCHO345073 ncbi Vibrio cholerae O3954
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169614
TTUR377629 ncbi Teredinibacter turnerae T79014
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12513
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252594
TCRU317025 ncbi Thiomicrospira crunogena XCL-24
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT23
SSP94122 ncbi Shewanella sp. ANA-34
SSP644076 Silicibacter sp. TrichCH4B3
SSP292414 ncbi Ruegeria sp. TM10403
SSON300269 ncbi Shigella sonnei Ss0464
SSED425104 ncbi Shewanella sediminis HAW-EB34
SRUB309807 ncbi Salinibacter ruber DSM 138553
SPRO399741 ncbi Serratia proteamaculans 5684
SPEA398579 ncbi Shewanella pealeana ATCC 7003454
SONE211586 ncbi Shewanella oneidensis MR-14
SMEL266834 ncbi Sinorhizobium meliloti 10214
SMED366394 ncbi Sinorhizobium medicae WSM4194
SLOI323850 ncbi Shewanella loihica PV-44
SLAC55218 Ruegeria lacuscaerulensis3
SHIGELLA ncbi Shigella flexneri 2a str. 2457T3
SHAL458817 ncbi Shewanella halifaxensis HAW-EB44
SGLO343509 ncbi Sodalis glossinidius morsitans4
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB3
SFLE373384 ncbi Shigella flexneri 5 str. 84013
SFLE198214 ncbi Shigella flexneri 2a str. 3013
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4763
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B673
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91503
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT183
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty23
SDYS300267 ncbi Shigella dysenteriae Sd1974
SDEN318161 ncbi Shewanella denitrificans OS2174
SDEG203122 ncbi Saccharophagus degradans 2-403
SBOY300268 ncbi Shigella boydii Sb2274
SBAL402882 ncbi Shewanella baltica OS1854
SBAL399599 ncbi Shewanella baltica OS1954
SALA317655 ncbi Sphingopyxis alaskensis RB22563
SACI56780 ncbi Syntrophus aciditrophicus SB4
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170253
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170293
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.13
RSOL267608 ncbi Ralstonia solanacearum GMI10004
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111704
RPOM246200 ncbi Ruegeria pomeroyi DSS-34
RPAL316058 ncbi Rhodopseudomonas palustris HaA24
RPAL316057 ncbi Rhodopseudomonas palustris BisB54
RPAL316056 ncbi Rhodopseudomonas palustris BisB184
RPAL316055 ncbi Rhodopseudomonas palustris BisA534
RPAL258594 ncbi Rhodopseudomonas palustris CGA0094
RMET266264 ncbi Ralstonia metallidurans CH344
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38414
RFER338969 ncbi Rhodoferax ferrireducens T1184
REUT381666 ncbi Ralstonia eutropha H164
REUT264198 ncbi Ralstonia eutropha JMP1344
RETL347834 ncbi Rhizobium etli CFN 424
RDEN375451 ncbi Roseobacter denitrificans OCh 1143
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30004
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a4
PSTU379731 ncbi Pseudomonas stutzeri A15013
PSP56811 Psychrobacter sp.4
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-13
PSP296591 ncbi Polaromonas sp. JS6663
PSP117 Pirellula sp.3
PPUT76869 ncbi Pseudomonas putida GB-13
PPUT351746 ncbi Pseudomonas putida F13
PPUT160488 ncbi Pseudomonas putida KT24403
PPRO298386 ncbi Photobacterium profundum SS94
PNAP365044 ncbi Polaromonas naphthalenivorans CJ24
PMUL272843 ncbi Pasteurella multocida multocida Pm704
PMEN399739 ncbi Pseudomonas mendocina ymp4
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO13
PING357804 ncbi Psychromonas ingrahamii 374
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1253
PGIN242619 ncbi Porphyromonas gingivalis W833
PFLU220664 ncbi Pseudomonas fluorescens Pf-54
PFLU216595 ncbi Pseudomonas fluorescens SBW254
PFLU205922 ncbi Pseudomonas fluorescens Pf0-14
PENT384676 ncbi Pseudomonas entomophila L483
PDIS435591 ncbi Parabacteroides distasonis ATCC 85033
PCRY335284 ncbi Psychrobacter cryohalolentis K54
PCAR338963 ncbi Pelobacter carbinolicus DSM 23804
PATL342610 ncbi Pseudoalteromonas atlantica T6c3
PARC259536 ncbi Psychrobacter arcticus 273-43
PAER208964 ncbi Pseudomonas aeruginosa PAO14
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA144
OANT439375 ncbi Ochrobactrum anthropi ATCC 491884
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2553
NOCE323261 ncbi Nitrosococcus oceani ATCC 197074
NMUL323848 ncbi Nitrosospira multiformis ATCC 251964
NMEN374833 ncbi Neisseria meningitidis 0534424
NMEN272831 ncbi Neisseria meningitidis FAM184
NMEN122587 ncbi Neisseria meningitidis Z24914
NMEN122586 ncbi Neisseria meningitidis MC584
NHAM323097 ncbi Nitrobacter hamburgensis X143
NGON242231 ncbi Neisseria gonorrhoeae FA 10904
NEUT335283 ncbi Nitrosomonas eutropha C913
NEUR228410 ncbi Nitrosomonas europaea ATCC 197183
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124443
MXAN246197 ncbi Myxococcus xanthus DK 16224
MTHE349307 ncbi Methanosaeta thermophila PT3
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E4
MSP409 Methylobacterium sp.4
MSP400668 ncbi Marinomonas sp. MWYL13
MSP266779 ncbi Chelativorans sp. BNC13
MPET420662 ncbi Methylibium petroleiphilum PM14
MMAZ192952 ncbi Methanosarcina mazei Go14
MMAR394221 ncbi Maricaulis maris MCS104
MMAG342108 ncbi Magnetospirillum magneticum AMB-14
MLOT266835 ncbi Mesorhizobium loti MAFF3030994
MFLA265072 ncbi Methylobacillus flagellatus KT3
MEXT419610 ncbi Methylobacterium extorquens PA13
MCAP243233 ncbi Methylococcus capsulatus Bath3
MBAR269797 ncbi Methanosarcina barkeri Fusaro4
MAQU351348 ncbi Marinobacter aquaeolei VT84
MACE188937 ncbi Methanosarcina acetivorans C2A4
LPNE400673 ncbi Legionella pneumophila Corby3
LPNE297246 ncbi Legionella pneumophila Paris3
LPNE297245 ncbi Legionella pneumophila Lens3
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 13
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-003
LCHO395495 ncbi Leptothrix cholodnii SP-64
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785784
JSP375286 ncbi Janthinobacterium sp. Marseille4
ILOI283942 ncbi Idiomarina loihiensis L2TR4
HSOM228400 ncbi Haemophilus somnus 23363
HSOM205914 ncbi Haemophilus somnus 129PT3
HNEP81032 Hyphomonas neptunium3
HINF71421 ncbi Haemophilus influenzae Rd KW203
HINF374930 ncbi Haemophilus influenzae PittEE3
HINF281310 ncbi Haemophilus influenzae 86-028NP3
HHAL349124 ncbi Halorhodospira halophila SL14
HDUC233412 ncbi Haemophilus ducreyi 35000HP3
HCHE349521 ncbi Hahella chejuensis KCTC 23964
HARS204773 ncbi Herminiimonas arsenicoxydans3
GURA351605 ncbi Geobacter uraniireducens Rf44
GSUL243231 ncbi Geobacter sulfurreducens PCA4
GOXY290633 ncbi Gluconobacter oxydans 621H3
GMET269799 ncbi Geobacter metallireducens GS-154
GBET391165 ncbi Granulibacter bethesdensis CGDNIH13
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-003
FTUL418136 ncbi Francisella tularensis tularensis WY96-34183
FTUL401614 ncbi Francisella novicida U1123
FTUL393115 ncbi Francisella tularensis tularensis FSC1983
FTUL393011 ncbi Francisella tularensis holarctica OSU183
FTUL351581 Francisella tularensis holarctica FSC2003
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S853
FRANT ncbi Francisella tularensis tularensis SCHU S43
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250173
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255864
ESP42895 Enterobacter sp.4
ELIT314225 ncbi Erythrobacter litoralis HTCC25944
EFER585054 ncbi Escherichia fergusonii ATCC 354693
ECOO157 ncbi Escherichia coli O157:H7 EDL9334
ECOL83334 Escherichia coli O157:H74
ECOL585397 ncbi Escherichia coli ED1a4
ECOL585057 ncbi Escherichia coli IAI394
ECOL585056 ncbi Escherichia coli UMN0264
ECOL585055 ncbi Escherichia coli 559894
ECOL585035 ncbi Escherichia coli S884
ECOL585034 ncbi Escherichia coli IAI14
ECOL481805 ncbi Escherichia coli ATCC 87394
ECOL469008 ncbi Escherichia coli BL21(DE3)4
ECOL439855 ncbi Escherichia coli SMS-3-54
ECOL413997 ncbi Escherichia coli B str. REL6064
ECOL409438 ncbi Escherichia coli SE114
ECOL405955 ncbi Escherichia coli APEC O14
ECOL364106 ncbi Escherichia coli UTI894
ECOL362663 ncbi Escherichia coli 5364
ECOL331111 ncbi Escherichia coli E24377A4
ECOL316407 ncbi Escherichia coli K-12 substr. W31104
ECOL199310 ncbi Escherichia coli CFT0734
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10434
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough4
DPSY177439 ncbi Desulfotalea psychrophila LSv543
DOLE96561 ncbi Desulfococcus oleovorans Hxd34
DNOD246195 ncbi Dichelobacter nodosus VCS1703A4
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G204
DARO159087 ncbi Dechloromonas aromatica RCB4
CVIO243365 ncbi Chromobacterium violaceum ATCC 124724
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA4
CSP78 Caulobacter sp.4
CSP501479 Citreicella sp. SE454
CSAL290398 ncbi Chromohalobacter salexigens DSM 30433
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)3
CPSY167879 ncbi Colwellia psychrerythraea 34H4
CJAP155077 Cellvibrio japonicus4
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1113
CBUR360115 ncbi Coxiella burnetii RSA 3313
CBUR227377 ncbi Coxiella burnetii RSA 4933
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN3
CBLO203907 ncbi Candidatus Blochmannia floridanus3
CAULO ncbi Caulobacter crescentus CB154
BVIE269482 ncbi Burkholderia vietnamiensis G44
BTRI382640 ncbi Bartonella tribocorum CIP 1054763
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54823
BTHA271848 ncbi Burkholderia thailandensis E2644
BSUI470137 ncbi Brucella suis ATCC 234454
BSUI204722 ncbi Brucella suis 13303
BSP376 Bradyrhizobium sp.4
BSP36773 Burkholderia sp.4
BQUI283165 ncbi Bartonella quintana Toulouse3
BPSE320373 ncbi Burkholderia pseudomallei 6684
BPSE320372 ncbi Burkholderia pseudomallei 1710b4
BPSE272560 ncbi Burkholderia pseudomallei K962434
BPET94624 Bordetella petrii4
BPER257313 ncbi Bordetella pertussis Tohama I3
BPAR257311 ncbi Bordetella parapertussis 128224
BOVI236 Brucella ovis4
BMEL359391 ncbi Brucella melitensis biovar Abortus 23084
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M4
BMAL320389 ncbi Burkholderia mallei NCTC 102474
BMAL320388 ncbi Burkholderia mallei SAVP14
BMAL243160 ncbi Burkholderia mallei ATCC 233444
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1104
BHEN283166 ncbi Bartonella henselae Houston-13
BCIC186490 Candidatus Baumannia cicadellinicola3
BCEN331272 ncbi Burkholderia cenocepacia HI24244
BCEN331271 ncbi Burkholderia cenocepacia AU 10544
BCAN483179 ncbi Brucella canis ATCC 233654
BBRO257310 ncbi Bordetella bronchiseptica RB504
BBAC360095 ncbi Bartonella bacilliformis KC5833
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)3
BAMB398577 ncbi Burkholderia ambifaria MC40-63
BAMB339670 ncbi Burkholderia ambifaria AMMD3
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9413
ASP76114 ncbi Aromatoleum aromaticum EbN14
ASP62977 ncbi Acinetobacter sp. ADP13
ASP62928 ncbi Azoarcus sp. BH724
ASP232721 ncbi Acidovorax sp. JS423
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4494
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL034
APLE416269 ncbi Actinobacillus pleuropneumoniae L204
AHYD196024 Aeromonas hydrophila dhakensis4
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232704
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-14
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C4
ACRY349163 ncbi Acidiphilium cryptum JF-53
ACAU438753 ncbi Azorhizobium caulinodans ORS 5714
ABOR393595 ncbi Alcanivorax borkumensis SK23
ABAU360910 ncbi Bordetella avium 197N4
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3454
AAVE397945 ncbi Acidovorax citrulli AAC00-13


Names of the homologs of the genes in the group in each of these orgs
  G6575   G6574   G6573   EG10721   
YPSE349747 YPSIP31758_1602YPSIP31758_1601YPSIP31758_1600YPSIP31758_3565
YPSE273123 YPTB2440YPTB2441YPTB2442YPTB0511
YPES386656 YPDSF_1821YPDSF_1822YPDSF_1823YPDSF_3272
YPES377628 YPN_2004YPN_2005YPN_2006YPN_0625
YPES360102 YPA_1897YPA_1898YPA_1899YPA_2964
YPES349746 YPANGOLA_A2861YPANGOLA_A2862YPANGOLA_A2863YPANGOLA_A4026
YPES214092 YPO1628YPO1627YPO1626YPO3462
YPES187410 Y1787Y1786Y1785Y0723
YENT393305 YE1712YE1711YE1710YE0472
XORY360094 XOOORF_2342XOOORF_2343XOOORF_2342
XORY342109 XOO2182XOO2181XOO2182
XORY291331 XOO2305XOO2304XOO2305
XFAS405440 XFASM12_0384XFASM12_0385XFASM12_0384
XFAS183190 PD_0356PD_0357PD_0356
XFAS160492 XF1076XF1077XF1076
XCAM487884 XCC-B100_2053XCC-B100_2054XCC-B100_2053
XCAM316273 XCAORF_2392XCAORF_2391XCAORF_2392
XCAM314565 XC_1988XC_1989XC_1988
XCAM190485 XCC2126XCC2125XCC2126
XAXO190486 XAC2081XAC2082XAC2081
XAUT78245 XAUT_4462XAUT_4461XAUT_4462XAUT_1311
VVUL216895 VV1_2082VV1_2081VV1_2080VV2_1004
VVUL196600 VV2361VV2362VV2363VVA1496
VPAR223926 VP0979VP0978VP0977VPA0224
VFIS312309 VFA0464VFA0463VFA0462VFA0463
VEIS391735 VEIS_3181VEIS_3180VEIS_3181VEIS_2962
VCHO345073 VC0395_A1472VC0395_A1473VC0395_A1474VC0395_0723
VCHO VC1882VC1883VC1884VCA0782
TTUR377629 TERTU_1755TERTU_1756TERTU_1755TERTU_3621
TDEN326298 TMDEN_1044TMDEN_1044TMDEN_1315
TDEN292415 TBD_1761TBD_1760TBD_1761TBD_2291
TCRU317025 TCR_1172TCR_1173TCR_1172TCR_2087
STYP99287 STM1219STM1218STM1217
SSP94122 SHEWANA3_2285SHEWANA3_2286SHEWANA3_2287SHEWANA3_2286
SSP644076 SCH4B_1910SCH4B_1910SCH4B_0602
SSP292414 TM1040_1846TM1040_1846TM1040_3698
SSON300269 SSO_1138SSO_1137SSO_1136SSO_4272
SSED425104 SSED_2829SSED_2830SSED_2831SSED_2830
SRUB309807 SRU_0019SRU_1203SRU_1516
SPRO399741 SPRO_2003SPRO_2002SPRO_2001SPRO_0516
SPEA398579 SPEA_1547SPEA_1546SPEA_1545SPEA_1546
SONE211586 SO_2259SO_2258SO_2257SO_2258
SMEL266834 SMC01935SMC01376SMC01935SMB20764
SMED366394 SMED_0919SMED_0920SMED_0919SMED_4230
SLOI323850 SHEW_1634SHEW_1633SHEW_1632SHEW_1633
SLAC55218 SL1157_0055SL1157_0053SL1157_0055
SHIGELLA YCFWYCFVYCFU
SHAL458817 SHAL_1617SHAL_1616SHAL_1615SHAL_1616
SGLO343509 SG1078SG1077SG1076SG0912
SFUM335543 SFUM_3743SFUM_3743SFUM_2810
SFLE373384 SFV_1138SFV_1137SFV_1136
SFLE198214 AAN42740.1AAN42739.1AAN42738.1
SENT454169 SEHA_C1334SEHA_C1333SEHA_C1332
SENT321314 SCH_1169SCH_1168SCH_1167
SENT295319 SPA1631SPA1632SPA1633
SENT220341 STY1259STY1258STY1257
SENT209261 T1701T1702T1703
SDYS300267 SDY_2032SDY_2033SDY_2034SDY_4120
SDEN318161 SDEN_1678SDEN_1677SDEN_1676SDEN_1677
SDEG203122 SDE_1809SDE_1810SDE_1809
SBOY300268 SBO_1943SBO_1944SBO_1945SBO_4122
SBAL402882 SHEW185_2391SHEW185_2392SHEW185_2393SHEW185_2392
SBAL399599 SBAL195_2507SBAL195_2508SBAL195_2509SBAL195_2508
SALA317655 SALA_1175SALA_1176SALA_1175
SACI56780 SYN_00923SYN_00922SYN_00923SYN_00922
RSPH349102 RSPH17025_0402RSPH17025_0403RSPH17025_0402
RSPH349101 RSPH17029_2433RSPH17029_2432RSPH17029_2433
RSPH272943 RSP_0777RSP_0776RSP_0777
RSOL267608 RSC1117RSC1118RSC1117RSC1718
RRUB269796 RRU_A1578RRU_A2748RRU_A1578RRU_A1298
RPOM246200 SPO_1123SPO_1124SPO_1123SPO_0473
RPAL316058 RPB_2598RPB_3881RPB_2598RPB_4094
RPAL316057 RPD_2864RPD_1471RPD_2864RPD_3830
RPAL316056 RPC_2428RPC_3826RPC_2428RPC_1281
RPAL316055 RPE_2545RPE_3952RPE_2545RPE_3105
RPAL258594 RPA2927RPA1650RPA2927RPA0690
RMET266264 RMET_1040RMET_1041RMET_1040RMET_0761
RLEG216596 RL1720RL1721RL1720RL0172
RFER338969 RFER_3232RFER_3231RFER_3232RFER_0140
REUT381666 H16_A1173H16_A1174H16_A1173H16_B1283
REUT264198 REUT_A1076REUT_A1077REUT_A1076REUT_B4191
RETL347834 RHE_CH01624RHE_CH01625RHE_CH01624RHE_CH00162
RDEN375451 RD1_2047RD1_2047RD1_2389
PSYR223283 PSPTO_2109PSPTO_2110PSPTO_2109PSPTO_2564
PSYR205918 PSYR_1904PSYR_1905PSYR_1904PSYR_2256
PSTU379731 PST_2644PST_2642PST_2644
PSP56811 PSYCPRWF_1740PSYCPRWF_1739PSYCPRWF_1740PSYCPRWF_1739
PSP312153 PNUC_1468PNUC_1467PNUC_1468
PSP296591 BPRO_1014BPRO_1015BPRO_1014
PSP117 RB6881RB1517RB6881
PPUT76869 PPUTGB1_1695PPUTGB1_1696PPUTGB1_1697
PPUT351746 PPUT_3588PPUT_3587PPUT_3588
PPUT160488 PP_2154PP_2155PP_2154
PPRO298386 PBPRA2388PBPRA2389PBPRA2390PBPRB0368
PNAP365044 PNAP_3256PNAP_3255PNAP_3256PNAP_3255
PMUL272843 PM0562PM0561PM0560PM0561
PMEN399739 PMEN_1609PMEN_1608PMEN_1609PMEN_2881
PLUM243265 PLU2812PLU2813PLU2814
PING357804 PING_2201PING_2202PING_2203PING_3687
PHAL326442 PSHAA1390PSHAA1389PSHAA1388
PGIN242619 PG_1692PG_0922PG_1692
PFLU220664 PFL_1961PFL_1962PFL_1961PFL_2947
PFLU216595 PFLU1572PFLU1573PFLU1574PFLU1786
PFLU205922 PFL_3857PFL_3858PFL_3857PFL_4015
PENT384676 PSEEN3708PSEEN3707PSEEN3708
PDIS435591 BDI_3305BDI_2882BDI_1637
PCRY335284 PCRYO_0787PCRYO_0788PCRYO_0787PCRYO_1926
PCAR338963 PCAR_1249PCAR_1250PCAR_1249PCAR_0269
PATL342610 PATL_2360PATL_2361PATL_1727
PARC259536 PSYC_0781PSYC_0782PSYC_0781
PAER208964 PA2988PA2987PA2988PA3375
PAER208963 PA14_25430PA14_25440PA14_25430PA14_20420
OANT439375 OANT_2404OANT_2403OANT_2404OANT_2191
NWIN323098 NWI_1864NWI_1863NWI_1864
NOCE323261 NOC_2669NOC_2670NOC_2669NOC_2214
NMUL323848 NMUL_A2509NMUL_A2508NMUL_A2509NMUL_A1972
NMEN374833 NMCC_1116NMCC_1115NMCC_1116NMCC_1115
NMEN272831 NMC1135NMC1134NMC1135NMC1134
NMEN122587 NMA1403NMA1402NMA1403NMA1402
NMEN122586 NMB_1235NMB_1234NMB_1235NMB_1234
NHAM323097 NHAM_2196NHAM_2195NHAM_2196
NGON242231 NGO0769NGO0770NGO0769NGO0770
NEUT335283 NEUT_2492NEUT_2491NEUT_2492
NEUR228410 NE1057NE1056NE1057
NARO279238 SARO_1765SARO_1766SARO_1765
MXAN246197 MXAN_4730MXAN_4729MXAN_5419MXAN_4729
MTHE349307 MTHE_0918MTHE_1456MTHE_1456
MSUC221988 MS1185MS1186MS1187MS1186
MSP409 M446_4409M446_4410M446_4409M446_2909
MSP400668 MMWYL1_2146MMWYL1_2147MMWYL1_2146
MSP266779 MESO_1041MESO_1042MESO_1041
MPET420662 MPE_A2748MPE_A2747MPE_A2748MPE_B0465
MMAZ192952 MM0091MM2833MM0091MM0950
MMAR394221 MMAR10_1376MMAR10_1377MMAR10_1376MMAR10_1377
MMAG342108 AMB2572AMB2571AMB2572AMB2916
MLOT266835 MLL1342MLL1341MLL1342MLR9286
MFLA265072 MFLA_2095MFLA_2094MFLA_2095
MEXT419610 MEXT_1065MEXT_1064MEXT_1065
MCAP243233 MCA_2624MCA_2625MCA_2624
MBAR269797 MBAR_A3444MBAR_A3446MBAR_A3444MBAR_A0791
MAQU351348 MAQU_1747MAQU_1746MAQU_1747MAQU_4042
MACE188937 MA2490MA1668MA2490MA0377
LPNE400673 LPC_1754LPC_1753LPC_1754
LPNE297246 LPP2239LPP2238LPP2239
LPNE297245 LPL2211LPL2210LPL2211
LPNE272624 LPG2285LPG2284LPG2285
LINT363253 LI1026LI1025LI1026
LCHO395495 LCHO_2398LCHO_2397LCHO_2398LCHO_1902
KPNE272620 GKPORF_B0031GKPORF_B0030GKPORF_B0029GKPORF_B3854
JSP375286 MMA_1265MMA_1266MMA_1265MMA_1537
ILOI283942 IL1516IL1517IL1518IL1767
HSOM228400 HSM_1417HSM_1418HSM_1419
HSOM205914 HS_0942HS_0943HS_0944
HNEP81032 HNE_1765HNE_1766HNE_1765
HINF71421 HI_1548HI_1549HI_1555
HINF374930 CGSHIEE_05320CGSHIEE_05325CGSHIEE_05355
HINF281310 NTHI1586NTHI1585NTHI1578
HHAL349124 HHAL_1252HHAL_1251HHAL_1252HHAL_1251
HDUC233412 HD_0861HD_0860HD_0858
HCHE349521 HCH_02350HCH_02351HCH_02350HCH_01263
HARS204773 HEAR2224HEAR2223HEAR2224
GURA351605 GURA_3239GURA_3238GURA_3239GURA_3238
GSUL243231 GSU_2270GSU_2269GSU_2270GSU_2269
GOXY290633 GOX0078GOX0077GOX0078
GMET269799 GMET_2359GMET_2358GMET_2359GMET_2358
GBET391165 GBCGDNIH1_1283GBCGDNIH1_1282GBCGDNIH1_1283
FTUL458234 FTA_0500FTA_0501FTA_0500
FTUL418136 FTW_1669FTW_1668FTW_1669
FTUL401614 FTN_0502FTN_0503FTN_0502
FTUL393115 FTF0404FTF0405FTF0404
FTUL393011 FTH_0472FTH_0473FTH_0472
FTUL351581 FTL_0474FTL_0475FTL_0474
FSUC59374 FSU3206FSU3207FSU3206
FRANT LOLCLOLDLOLC
FPHI484022 FPHI_0343FPHI_0342FPHI_0343
FNUC190304 FN0581FN0827FN0581FN0827
ESP42895 ENT638_1633ENT638_1632ENT638_1631ENT638_0300
ELIT314225 ELI_07010ELI_07005ELI_07010ELI_07005
EFER585054 EFER_1282EFER_1281EFER_1280
ECOO157 YCFWYCFVYCFUPHNL
ECOL83334 ECS1496ECS1495ECS1494ECS5079
ECOL585397 ECED1_1261ECED1_1260ECED1_1259ECED1_4831
ECOL585057 ECIAI39_2042ECIAI39_2043ECIAI39_2044ECIAI39_4520
ECOL585056 ECUMN_1296ECUMN_1295ECUMN_1294ECUMN_4628
ECOL585055 EC55989_1230EC55989_1229EC55989_1228EC55989_4587
ECOL585035 ECS88_1132ECS88_1131ECS88_1130ECS88_4597
ECOL585034 ECIAI1_1155ECIAI1_1154ECIAI1_1153ECIAI1_4326
ECOL481805 ECOLC_2483ECOLC_2484ECOLC_2485ECOLC_3930
ECOL469008 ECBD_2483ECBD_2484ECBD_2485ECBD_3934
ECOL439855 ECSMS35_2008ECSMS35_2009ECSMS35_2010ECSMS35_4562
ECOL413997 ECB_01114ECB_01113ECB_01112ECB_03968
ECOL409438 ECSE_1183ECSE_1182ECSE_1181ECSE_4395
ECOL405955 APECO1_199APECO1_198APECO1_197APECO1_2354
ECOL364106 UTI89_C1246UTI89_C1245UTI89_C1244UTI89_C4691
ECOL362663 ECP_1109ECP_1110ECP_1109ECP_4339
ECOL331111 ECE24377A_1240ECE24377A_1239ECE24377A_1238ECE24377A_4650
ECOL316407 ECK1104:JW1104:B1118ECK1103:JW5162:B1117ECK1102:JW5161:B1116ECK4089:JW4057:B4096
ECOL199310 C1393C1392C1391C5102
ECAR218491 ECA1825ECA1824ECA1823ECA0495
DVUL882 DVU_2375DVU_2374DVU_2375DVU_0753
DPSY177439 DP1628DP1627DP1628
DOLE96561 DOLE_2846DOLE_2845DOLE_2846DOLE_0917
DNOD246195 DNO_1228DNO_1229DNO_1228DNO_0872
DDES207559 DDE_1366DDE_1367DDE_1366DDE_3333
DARO159087 DARO_2836DARO_2835DARO_2836DARO_2835
CVIO243365 CV_2964CV_2963CV_2964CV_1841
CVES412965 COSY_0769COSY_0770COSY_0769COSY_0770
CSP78 CAUL_2811CAUL_2810CAUL_2811CAUL_2810
CSP501479 CSE45_0843CSE45_0844CSE45_0843CSE45_2449
CSAL290398 CSAL_1582CSAL_1583CSAL_1582
CRUT413404 RMAG_0844RMAG_0845RMAG_0844
CPSY167879 CPS_3477CPS_3478CPS_3479CPS_0775
CJAP155077 CJA_1777CJA_1776CJA_1775CJA_1776
CBUR434922 COXBU7E912_1046COXBU7E912_1047COXBU7E912_1046
CBUR360115 COXBURSA331_A0938COXBURSA331_A0939COXBURSA331_A0938
CBUR227377 CBU_1001CBU_1000CBU_1001
CBLO291272 BPEN_406BPEN_407BPEN_408
CBLO203907 BFL394BFL395BFL396
CAULO CC1930CC1929CC1930CC1929
BVIE269482 BCEP1808_2193BCEP1808_2192BCEP1808_2193BCEP1808_0286
BTRI382640 BT_1200BT_1199BT_1200
BTHE226186 BT_2838BT_3640BT_2494
BTHA271848 BTH_I1887BTH_I1888BTH_I1887BTH_I2131
BSUI470137 BSUIS_A0862BSUIS_A0863BSUIS_A0862BSUIS_B1148
BSUI204722 BR_0823BR_0824BR_0823
BSP376 BRADO4153BRADO5936BRADO4153BRADO5351
BSP36773 BCEP18194_A5420BCEP18194_A5419BCEP18194_A5420BCEP18194_B0724
BQUI283165 BQ05810BQ05820BQ05810
BPSE320373 BURPS668_2584BURPS668_2583BURPS668_2584BURPS668_3306
BPSE320372 BURPS1710B_A2952BURPS1710B_A2951BURPS1710B_A2952BURPS1710B_A3626
BPSE272560 BPSL2277BPSL2276BPSL2277BPSL2852
BPET94624 BPET2764BPET2763BPET2764BPET2221
BPER257313 BP1107BP1108BP1107
BPAR257311 BPP2050BPP2051BPP2050BPP3042
BOVI236 GBOORF0848GBOORF0849GBOORF0848GBOORF1680
BMEL359391 BAB1_0843BAB1_0844BAB1_0843BAB1_1684
BMEL224914 BMEI1139BMEI1138BMEI1139BMEI0360
BMAL320389 BMA10247_1474BMA10247_1473BMA10247_1474BMA10247_2591
BMAL320388 BMASAVP1_A2201BMASAVP1_A2200BMASAVP1_A2201BMASAVP1_A0321
BMAL243160 BMA_1696BMA_1695BMA_1696BMA_2405
BJAP224911 BLL4876BLL4875BLL4876BLR1226
BHEN283166 BH08780BH08770BH08780
BCIC186490 BCI_0424BCI_0425BCI_0426
BCEN331272 BCEN2424_2114BCEN2424_2113BCEN2424_2114BCEN2424_3138
BCEN331271 BCEN_5963BCEN_5964BCEN_5963BCEN_3414
BCAN483179 BCAN_A0838BCAN_A0839BCAN_A0838BCAN_A1711
BBRO257310 BB2298BB2299BB2298BB3005
BBAC360095 BARBAKC583_0795BARBAKC583_0796BARBAKC583_0795
BAPH198804 BUSG286BUSG285BUSG284
BAMB398577 BAMMC406_2024BAMMC406_2023BAMMC406_2024
BAMB339670 BAMB_2151BAMB_2150BAMB_2151
BABO262698 BRUAB1_0837BRUAB1_0838BRUAB1_0837
ASP76114 EBA5819EBA5820EBA5819EBA6813
ASP62977 ACIAD2641ACIAD2640ACIAD2641
ASP62928 AZO1509AZO1510AZO1509AZO0834
ASP232721 AJS_3421AJS_3420AJS_3421
ASAL382245 ASA_1885ASA_1884ASA_1883ASA_0829
APLE434271 APJL_2087APJL_2088APJL_2089APJL_2088
APLE416269 APL_2036APL_2037APL_2038APL_2037
AHYD196024 AHA_2007AHA_2006AHA_2005AHA_3488
AFER243159 AFE_2556AFE_2555AFE_2556AFE_0815
AEHR187272 MLG_1440MLG_1439MLG_1440MLG_2139
ADEH290397 ADEH_1079ADEH_3410ADEH_1079ADEH_0441
ACRY349163 ACRY_0940ACRY_0940ACRY_2916
ACAU438753 AZC_1687AZC_1688AZC_1687AZC_3398
ABOR393595 ABO_1049ABO_1050ABO_1049
ABAU360910 BAV1522BAV1523BAV1522BAV1967
ABAC204669 ACID345_3567ACID345_3572ACID345_3567ACID345_1867
AAVE397945 AAVE_3700AAVE_3699AAVE_3700


Organism features enriched in list (features available for 250 out of the 269 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 2.289e-71892
Disease:Bubonic_plague 0.006006066
Disease:Dysentery 0.006006066
Endospores:No 6.133e-1252211
Endospores:Yes 2.007e-11253
GC_Content_Range4:0-40 1.021e-2632213
GC_Content_Range4:40-60 1.956e-8128224
GC_Content_Range4:60-100 1.212e-789145
GC_Content_Range7:0-30 8.084e-8447
GC_Content_Range7:30-40 8.380e-1728166
GC_Content_Range7:50-60 1.304e-1177107
GC_Content_Range7:60-70 8.701e-1088134
Genome_Size_Range5:0-2 1.090e-1822155
Genome_Size_Range5:2-4 0.001637669197
Genome_Size_Range5:4-6 6.064e-19128184
Genome_Size_Range5:6-10 0.00051483147
Genome_Size_Range9:0-1 0.0012491427
Genome_Size_Range9:1-2 4.290e-1518128
Genome_Size_Range9:2-3 0.000046333120
Genome_Size_Range9:4-5 1.520e-86696
Genome_Size_Range9:5-6 1.046e-86288
Genome_Size_Range9:6-8 0.00005492838
Gram_Stain:Gram_Neg 9.601e-51227333
Gram_Stain:Gram_Pos 3.423e-431150
Habitat:Multiple 0.002119191178
Habitat:Specialized 0.00007991053
Motility:No 3.193e-1033151
Motility:Yes 5.396e-8146267
Optimal_temp.:- 0.0093615122257
Optimal_temp.:25-30 1.875e-61819
Optimal_temp.:35-37 0.00001381313
Oxygen_Req:Aerobic 0.008007691185
Oxygen_Req:Anaerobic 0.000012725102
Oxygen_Req:Facultative 0.0003010105201
Pathogenic_in:Animal 0.00413133866
Shape:Coccobacillus 0.00007931111
Shape:Coccus 1.789e-81382
Shape:Irregular_coccus 0.0051438217
Shape:Rod 1.941e-16196347
Shape:Sphere 0.0020387219
Shape:Spiral 0.0002604534
Temp._range:Mesophilic 0.0003992218473
Temp._range:Psychrophilic 0.000451099
Temp._range:Thermophilic 5.636e-7235



Back to top


ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 264
Effective number of orgs (counting one per cluster within 468 clusters): 206

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTHE300852 ncbi Thermus thermophilus HB81
TTHE262724 ncbi Thermus thermophilus HB271
TSP1755 Thermoanaerobacter sp.0
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332230
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TFUS269800 ncbi Thermobifida fusca YX0
TERY203124 ncbi Trichodesmium erythraeum IMS1011
TELO197221 ncbi Thermosynechococcus elongatus BP-10
TDEN243275 ncbi Treponema denticola ATCC 354051
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen1
STRO369723 ncbi Salinispora tropica CNB-4400
STOK273063 ncbi Sulfolobus tokodaii 70
STHE322159 ncbi Streptococcus thermophilus LMD-90
STHE299768 ncbi Streptococcus thermophilus CNRZ10660
STHE264199 ncbi Streptococcus thermophilus LMG 183110
SSUI391296 ncbi Streptococcus suis 98HAH330
SSUI391295 ncbi Streptococcus suis 05ZYH330
SSP84588 ncbi Synechococcus sp. WH 81021
SSP64471 ncbi Synechococcus sp. CC93110
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)1
SSP321327 ncbi Synechococcus sp. JA-3-3Ab0
SSP1148 ncbi Synechocystis sp. PCC 68030
SSP1131 Synechococcus sp. CC96050
SSOL273057 ncbi Sulfolobus solfataricus P20
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153050
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370552 ncbi Streptococcus pyogenes MGAS102700
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103940
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SPNE488221 ncbi Streptococcus pneumoniae 705851
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-61
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-141
SPNE171101 ncbi Streptococcus pneumoniae R61
SPNE170187 ncbi Streptococcus pneumoniae G541
SPNE1313 Streptococcus pneumoniae1
SMUT210007 ncbi Streptococcus mutans UA1590
SMAR399550 ncbi Staphylothermus marinus F11
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14351
SGOR29390 Streptococcus gordonii Challis0
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23380
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122280
SEPI176279 ncbi Staphylococcus epidermidis RP62A0
SELO269084 ncbi Synechococcus elongatus PCC 63010
SCO ncbi Streptomyces coelicolor A3(2)1
SAVE227882 ncbi Streptomyces avermitilis MA-46801
SAUR93062 ncbi Staphylococcus aureus aureus COL0
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83250
SAUR426430 ncbi Staphylococcus aureus aureus Newman0
SAUR418127 ncbi Staphylococcus aureus aureus Mu30
SAUR367830 Staphylococcus aureus aureus USA3000
SAUR359787 ncbi Staphylococcus aureus aureus JH10
SAUR359786 ncbi Staphylococcus aureus aureus JH90
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4760
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2520
SAUR273036 ncbi Staphylococcus aureus RF1220
SAUR196620 ncbi Staphylococcus aureus aureus MW20
SAUR158879 ncbi Staphylococcus aureus aureus N3150
SAUR158878 ncbi Staphylococcus aureus aureus Mu500
SAGA211110 ncbi Streptococcus agalactiae NEM3161
SAGA208435 ncbi Streptococcus agalactiae 2603V/R1
SAGA205921 ncbi Streptococcus agalactiae A9091
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RSP101510 ncbi Rhodococcus jostii RHA10
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332090
RCAS383372 ncbi Roseiflexus castenholzii DSM 139411
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
PTOR263820 ncbi Picrophilus torridus DSM 97900
PTHE370438 ncbi Pelotomaculum thermopropionicum SI0
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257450
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74547 ncbi Prochlorococcus marinus MIT 93130
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR59920 ncbi Prochlorococcus marinus NATL2A0
PMAR167555 ncbi Prochlorococcus marinus NATL1A0
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13750
PMAR146891 ncbi Prochlorococcus marinus AS96010
PLUT319225 ncbi Chlorobium luteolum DSM 2731
PISL384616 ncbi Pyrobaculum islandicum DSM 41841
PHOR70601 ncbi Pyrococcus horikoshii OT30
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PAER178306 ncbi Pyrobaculum aerophilum IM20
PACN267747 ncbi Propionibacterium acnes KPA1712020
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
OIHE221109 ncbi Oceanobacillus iheyensis HTE8311
NSP387092 ncbi Nitratiruptor sp. SB155-21
NSP35761 Nocardioides sp.0
NPHA348780 ncbi Natronomonas pharaonis DSM 21601
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra1
MTUB336982 ncbi Mycobacterium tuberculosis F111
MTHE264732 ncbi Moorella thermoacetica ATCC 390730
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MTBRV ncbi Mycobacterium tuberculosis H37Rv1
MTBCDC ncbi Mycobacterium tuberculosis CDC15511
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSP189918 ncbi Mycobacterium sp. KMS1
MSP164757 ncbi Mycobacterium sp. JLS0
MSP164756 ncbi Mycobacterium sp. MCS1
MSME246196 ncbi Mycobacterium smegmatis MC2 1551
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR368407 ncbi Methanoculleus marisnigri JR11
MMAR267377 ncbi Methanococcus maripaludis S20
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK1
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P21
MBOV233413 ncbi Mycobacterium bovis AF2122/971
MAVI243243 ncbi Mycobacterium avium 1040
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAER449447 ncbi Microcystis aeruginosa NIES-8431
MAEO419665 ncbi Methanococcus aeolicus Nankai-31
MABS561007 ncbi Mycobacterium abscessus ATCC 199770
LXYL281090 ncbi Leifsonia xyli xyli CTCB071
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53341
LSPH444177 ncbi Lysinibacillus sphaericus C3-411
LSAK314315 ncbi Lactobacillus sakei sakei 23K0
LREU557436 ncbi Lactobacillus reuteri DSM 200160
LPLA220668 ncbi Lactobacillus plantarum WCFS10
LMON265669 ncbi Listeria monocytogenes 4b F23651
LMON169963 ncbi Listeria monocytogenes EGD-e1
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82930
LLAC272623 ncbi Lactococcus lactis lactis Il14030
LLAC272622 ncbi Lactococcus lactis cremoris SK110
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LINN272626 ncbi Listeria innocua Clip112621
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LCAS321967 ncbi Lactobacillus casei ATCC 3340
LBRE387344 ncbi Lactobacillus brevis ATCC 3670
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1971
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5501
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)1
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)1
LACI272621 ncbi Lactobacillus acidophilus NCFM0
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167901
HSP64091 ncbi Halobacterium sp. NRC-10
HSAL478009 ncbi Halobacterium salinarum R10
HMUK485914 ncbi Halomicrobium mukohataei DSM 122861
HMOD498761 ncbi Heliobacterium modesticaldum Ice11
HMAR272569 ncbi Haloarcula marismortui ATCC 430490
HHEP235279 ncbi Helicobacter hepaticus ATCC 514491
HBUT415426 ncbi Hyperthermus butylicus DSM 54561
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237791
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-21
GKAU235909 ncbi Geobacillus kaustophilus HTA4260
GFOR411154 ncbi Gramella forsetii KT08031
FSP1855 Frankia sp. EAN1pec0
FSP106370 ncbi Frankia sp. CcI31
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B11
FMAG334413 ncbi Finegoldia magna ATCC 293280
FJOH376686 ncbi Flavobacterium johnsoniae UW1011
FALN326424 ncbi Frankia alni ACN14a0
EFAE226185 ncbi Enterococcus faecalis V5830
DSP255470 ncbi Dehalococcoides sp. CBDB10
DSP216389 ncbi Dehalococcoides sp. BAV10
DHAF138119 ncbi Desulfitobacterium hafniense Y511
DGEO319795 ncbi Deinococcus geothermalis DSM 113001
DETH243164 ncbi Dehalococcoides ethenogenes 1950
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTEP194439 ncbi Chlorobium tepidum TLS1
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE250
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPHY357809 ncbi Clostridium phytofermentans ISDg1
CPER289380 ncbi Clostridium perfringens SM1010
CPER195103 ncbi Clostridium perfringens ATCC 131241
CPER195102 ncbi Clostridium perfringens 130
CNOV386415 ncbi Clostridium novyi NT0
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3821
CMIC31964 ncbi Clavibacter michiganensis sepedonicus0
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CKLU431943 ncbi Clostridium kluyveri DSM 5551
CJEJ407148 ncbi Campylobacter jejuni jejuni 811161
CJEJ360109 ncbi Campylobacter jejuni doylei 269.971
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1761
CJEJ195099 ncbi Campylobacter jejuni RM12211
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111681
CJEI306537 ncbi Corynebacterium jeikeium K4110
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334061
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130320
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CEFF196164 ncbi Corynebacterium efficiens YS-3140
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131290
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C0
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B1
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80521
CABO218497 ncbi Chlamydophila abortus S26/30
BXEN266265 ncbi Burkholderia xenovorans LB4001
BTUR314724 ncbi Borrelia turicatae 91E1350
BTHU412694 ncbi Bacillus thuringiensis Al Hakam1
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-271
BPUM315750 ncbi Bacillus pumilus SAFR-0320
BLON206672 ncbi Bifidobacterium longum NCC27051
BLIC279010 ncbi Bacillus licheniformis ATCC 145801
BHER314723 ncbi Borrelia hermsii DAH0
BGAR290434 ncbi Borrelia garinii PBi0
BCLA66692 ncbi Bacillus clausii KSM-K160
BCER572264 ncbi Bacillus cereus 03BB1021
BCER405917 Bacillus cereus W1
BCER288681 ncbi Bacillus cereus E33L1
BCER226900 ncbi Bacillus cereus ATCC 145791
BBUR224326 ncbi Borrelia burgdorferi B310
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAMY326423 ncbi Bacillus amyloliquefaciens FZB421
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AVAR240292 ncbi Anabaena variabilis ATCC 294130
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP1667 Arthrobacter sp.1
APER272557 ncbi Aeropyrum pernix K10
ANAE240017 Actinomyces oris MG11
AMAR329726 ncbi Acaryochloris marina MBIC110171
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
ACEL351607 ncbi Acidothermus cellulolyticus 11B0
AAUR290340 ncbi Arthrobacter aurescens TC10


Names of the homologs of the genes in the group in each of these orgs
  G6575   G6574   G6573   EG10721   
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496
TWHI203267
TVOL273116
TTHE300852 TTHA1007
TTHE262724 TT_C0648
TSP1755
TPSE340099
TPEN368408
TPAL243276
TKOD69014
TFUS269800
TERY203124 TERY_5002
TELO197221
TDEN243275 TDE_2041
TACI273075
SWOL335541 SWOL_2457
STRO369723
STOK273063
STHE322159
STHE299768
STHE264199
SSUI391296
SSUI391295
SSP84588 SYNW1874OR0690
SSP64471
SSP321332 CYB_0167
SSP321327
SSP1148
SSP1131
SSOL273057
SSAP342451
SPYO370554
SPYO370553
SPYO370552
SPYO370551
SPYO319701
SPYO293653
SPYO286636
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SPNE488221 SP70585_0829
SPNE487214 SPH_0885
SPNE487213 SPT_1414
SPNE171101 SPR0694
SPNE170187 SPN04169
SPNE1313 SPJ_0728
SMUT210007
SMAR399550 SMAR_1403
SHAE279808 SH0699
SGOR29390
SERY405948
SEPI176280
SEPI176279
SELO269084
SCO SCO4936
SAVE227882 SAV6548
SAUR93062
SAUR93061
SAUR426430
SAUR418127
SAUR367830
SAUR359787
SAUR359786
SAUR282459
SAUR282458
SAUR273036
SAUR196620
SAUR158879
SAUR158878
SAGA211110 GBS1430
SAGA208435 SAG_1360
SAGA205921 SAK_1393
SACI330779
RSP101510
RSAL288705
RCAS383372 RCAS_0267
RBEL391896
PTOR263820
PTHE370438
PPEN278197
PMAR93060
PMAR74547
PMAR74546
PMAR59920
PMAR167555
PMAR167546
PMAR167542
PMAR167540
PMAR167539
PMAR146891
PLUT319225 PLUT_1701
PISL384616 PISL_1011
PHOR70601
PFUR186497
PAST100379
PARS340102
PAER178306
PACN267747
PABY272844
OTSU357244
OIHE221109 OB0974
NSP387092 NIS_0831
NSP35761
NPHA348780 NP0100A
MTUB419947 MRA_0075
MTUB336982 TBFG_10073
MTHE264732
MTHE187420
MTBRV RV0073
MTBCDC MT0079
MSYN262723
MSTA339860
MSP189918 MKMS_2044
MSP164757
MSP164756 MMCS_1998
MSME246196 MSMEG_2524
MSED399549
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAR444158
MMAR426368
MMAR402880
MMAR368407 MEMAR_0493
MMAR267377
MLEP272631
MLAB410358
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MGIL350054 MFLV_4127
MGEN243273
MFLO265311
MCAP340047
MBOV410289 BCG_0104
MBOV233413 MB0074
MAVI243243
MART243272
MAER449447 MAE_06460
MAEO419665 MAEO_0521
MABS561007
LXYL281090 LXX22050
LWEL386043 LWE0163
LSPH444177 BSPH_4375
LSAK314315
LREU557436
LPLA220668
LMON265669 LMOF2365_0205
LMON169963 LMO0194
LMES203120
LLAC272623
LLAC272622
LJOH257314
LINN272626 LIN0233
LHEL405566
LGAS324831
LDEL390333
LDEL321956
LCAS321967
LBRE387344
LBOR355277 LBJ_2540
LBOR355276 LBL_0572
LBIF456481 LEPBI_I0265
LBIF355278 LBF_0256
LACI272621
IHOS453591
HWAL362976 HQ2604A
HSP64091
HSAL478009
HMUK485914 HMUK_1518
HMOD498761 HM1_0430
HMAR272569
HHEP235279 HH_0318
HBUT415426 HBUT_0687
HAUR316274 HAUR_1603
GTHE420246 GTNG_1399
GKAU235909
GFOR411154 GFO_1949
FSP1855
FSP106370 FRANCCI3_2447
FNOD381764 FNOD_0669
FMAG334413
FJOH376686 FJOH_5001
FALN326424
EFAE226185
DSP255470
DSP216389
DHAF138119 DSY0538
DGEO319795 DGEO_0813
DETH243164
CTRA471473
CTRA471472
CTEP194439 CT_1474
CSUL444179
CPRO264201
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPHY357809 CPHY_2078
CPER289380
CPER195103 CPF_1199
CPER195102
CNOV386415
CMUR243161
CMIC443906 CMM_0375
CMIC31964
CMET456442
CMAQ397948
CKOR374847
CKLU431943 CKL_1661
CJEJ407148 C8J_0884
CJEJ360109 JJD26997_1164
CJEJ354242 CJJ81176_0965
CJEJ195099 CJE_1019
CJEJ192222 CJ0941C
CJEI306537
CHUT269798 CHU_2233
CGLU196627
CFEL264202
CEFF196164
CDIP257309
CDES477974
CCAV227941
CBOT508765 CLL_A2833
CBEI290402 CBEI_2431
CABO218497
BXEN266265 BXE_B2184
BTUR314724
BTHU412694 BALH_4754
BTHU281309 BT9727_4936
BPUM315750
BLON206672 BL1135
BLIC279010 BL01602
BHER314723
BGAR290434
BCLA66692
BCER572264 BCA_5394
BCER405917 BCE_5373
BCER288681 BCE33L4951
BCER226900 BC_5254
BBUR224326
BAPH372461
BAMY326423 RBAM_027350
BAFZ390236
AYEL322098
AVAR240292
AURANTIMONAS
ASP1667 ARTH_1100
APER272557
ANAE240017 ANA_2030
AMAR329726 AM1_5039
ALAI441768
ACEL351607
AAUR290340


Organism features enriched in list (features available for 249 out of the 264 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00014925592
Arrangment:Clusters 9.237e-61617
Arrangment:Singles 0.0084523110286
Disease:Pharyngitis 0.001037288
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 0.00007581111
Disease:Wide_range_of_infections 0.00007581111
Disease:bronchitis_and_pneumonitis 0.001037288
Disease:gastroenteritis 0.0065030113
Endospores:No 8.310e-16136211
Endospores:Yes 0.00298483253
GC_Content_Range4:0-40 1.220e-14135213
GC_Content_Range4:40-60 0.000015872224
GC_Content_Range4:60-100 0.000038542145
GC_Content_Range7:30-40 4.162e-12108166
GC_Content_Range7:50-60 0.000045328107
GC_Content_Range7:60-70 3.289e-635134
Genome_Size_Range5:0-2 2.268e-12103155
Genome_Size_Range5:2-4 0.0002773103197
Genome_Size_Range5:4-6 9.912e-2030184
Genome_Size_Range9:0-1 0.00013492127
Genome_Size_Range9:1-2 2.139e-882128
Genome_Size_Range9:2-3 3.651e-673120
Genome_Size_Range9:4-5 2.198e-111396
Genome_Size_Range9:5-6 4.050e-71788
Genome_Size_Range9:6-8 0.0007756738
Gram_Stain:Gram_Neg 7.503e-4561333
Gram_Stain:Gram_Pos 2.179e-30123150
Habitat:Specialized 0.00131273353
Motility:No 7.365e-15105151
Motility:Yes 1.625e-979267
Optimal_temp.:- 0.003030895257
Optimal_temp.:30-37 4.026e-61718
Oxygen_Req:Aerobic 0.001105463185
Pathogenic_in:Animal 0.00262571866
Salinity:Non-halophilic 0.000273661106
Shape:Coccus 2.004e-126482
Shape:Irregular_coccus 0.00364641317
Shape:Rod 2.588e-1799347
Shape:Sphere 0.00002251719
Temp._range:Mesophilic 0.0087089192473
Temp._range:Thermophilic 3.379e-62835



Back to top


ORGANISMS ENRICHED FOR GROUP:




Back to top


ORGANISMS DEPLETED FOR GROUP:




Back to top


PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
GLYCOCAT-PWY (glycogen degradation I)2462230.7742
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3002450.7489
PWY-1269 (CMP-KDO biosynthesis I)3252540.7374
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2912340.7038
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181970.6990
NAGLIPASYN-PWY (lipid IVA biosynthesis)3482570.6966
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2962350.6956
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951830.6905
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2902290.6742
PWY-5918 (heme biosynthesis I)2722200.6701
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251950.6601
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2862240.6536
TYRFUMCAT-PWY (tyrosine degradation I)1841690.6361
PWY-5913 (TCA cycle variation IV)3012280.6357
PWY-4041 (γ-glutamyl cycle)2792160.6226
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)1491460.6204
GLUTATHIONESYN-PWY (glutathione biosynthesis)3392410.6157
PWY-5857 (ubiquinone-10 biosynthesis (prokaryotic))1831640.6046
PWY-5855 (ubiquinone-7 biosynthesis (prokaryotic))1911650.5800
PWY0-845 (superpathway of pyridoxal 5'-phosphate biosynthesis and salvage)3292310.5774
ECASYN-PWY (enterobacterial common antigen biosynthesis)1911640.5730
PWY-5856 (ubiquinone-9 biosynthesis (prokaryotic))2551970.5727
PWY-5028 (histidine degradation II)1301250.5492
PWY-5669 (phosphatidylethanolamine biosynthesis I)4162580.5392
UBISYN-PWY (ubiquinol-8 biosynthesis (prokaryotic))3982500.5272
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)1761490.5255
GDPRHAMSYN-PWY (GDP-D-rhamnose biosynthesis)1561370.5209
REDCITCYC (TCA cycle variation II)1741470.5191
PYRIDOXSYN-PWY (pyridoxal 5'-phosphate biosynthesis I)4222570.5184
AST-PWY (arginine degradation II (AST pathway))1201140.5110
PWY-5148 (acyl-CoA hydrolysis)2271710.4915
KDOSYN-PWY (KDO transfer to lipid IVA I)1801450.4810
PWY0-1329 (succinate to cytochrome bo oxidase electron transfer)96950.4806
PLPSAL-PWY (pyridoxal 5'-phosphate salvage pathway)3742340.4797
PWY0-1335 (NADH to cytochrome bo oxidase electron transfer)1121050.4780
KDO-NAGLIPASYN-PWY (superpathway of KDO2-lipid A biosynthesis)1791440.4777
P344-PWY (acrylonitrile degradation)2101600.4752
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491790.4729
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491790.4729
DAPLYSINESYN-PWY (lysine biosynthesis I)3422200.4711
PWY-5386 (methylglyoxal degradation I)3052040.4687
PWY-5084 (2-ketoglutarate dehydrogenase complex)3262130.4687
PWY-5340 (sulfate activation for sulfonation)3852350.4586
PWY-5188 (tetrapyrrole biosynthesis I)4392540.4578
PWY0-501 (lipoate biosynthesis and incorporation I)3852340.4520
CHOLINE-BETAINE-ANA-PWY (choline degradation I)1351150.4461
GLUCONSUPER-PWY (D-gluconate degradation)2291650.4444
PWY-46 (putrescine biosynthesis III)1381160.4402
BETSYN-PWY (glycine betaine biosynthesis I (Gram-negative bacteria))1381160.4402
P601-PWY (D-camphor degradation)95890.4325
PWY0-541 (cyclopropane fatty acid (CFA) biosynthesis)3001960.4311
SULFATE-CYS-PWY (superpathway of sulfate assimilation and cysteine biosynthesis)3652230.4303
PWY-3162 (tryptophan degradation V (side chain pathway))94880.4293
PWY-6087 (4-chlorocatechol degradation)2231590.4239
GLUT-REDOX-PWY (glutathione redox reactions II)2461700.4228
PWY0-862 (cis-dodecenoyl biosynthesis)3432130.4228
PWY-5938 ((R)-acetoin biosynthesis I)3762260.4217
P184-PWY (protocatechuate degradation I (meta-cleavage pathway))94870.4202
LIPASYN-PWY (phospholipases)2121520.4135
GALACTCAT-PWY (D-galactonate degradation)104920.4092
PWY-5755 (4-hydroxybenzoate biosynthesis II (bacteria and fungi))81770.4049
PROSYN-PWY (proline biosynthesis I)4752580.4028
PWY-6389 ((S)-acetoin biosynthesis)3682200.4027
PWY-5497 (purine nucleotides degradation IV (anaerobic))1223-.4057
P122-PWY (heterolactic fermentation)1192-.4071



Back to top


PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G6574   G6573   EG10721   
G65750.9999650.9999890.998626
G65740.9999630.99932
G65730.998563
EG10721



Back to top


PAIRWISE BLAST SCORES:

  G6575   G6574   G6573   EG10721   
G65750.0f0-2.5e-31-
G6574-0.0f0--
G65731.1e-30-0.0f0-
EG10721---0.0f0



Back to top


PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- ABC-62-CPLX (LolCDE ABC lipoprotein transporter) (degree of match pw to cand: 1.000, degree of match cand to pw: 0.750, average score: 1.000)
  Genes in pathway or complex:
   *in cand* 0.9996 0.9986 G6573 (lolC) YCFU-MONOMER (LolC)
   *in cand* 0.9998 0.9993 G6574 (lolD) YCFV-MONOMER (LolD)
   *in cand* 0.9996 0.9986 G6575 (lolE) YCFW-MONOMER (LolE)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9991 0.9986 EG10721 (phnL) PHNL-MONOMER (PhnL)



Back to top


GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

G6573 G6574 G6575 (centered at G6574)
EG10721 (centered at EG10721)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G6575   G6574   G6573   EG10721   
312/623334/623313/623280/623
AAEO224324:0:Tyes0-0-
AAVE397945:0:Tyes101-
ABAC204669:0:Tyes1716172117160
ABAU360910:0:Tyes010436
ABOR393595:0:Tyes010-
ABUT367737:0:Tyes0-0-
ACAU438753:0:Tyes0101727
ACRY349163:8:Tyes0-01987
ADEH290397:0:Tyes64330006430
AEHR187272:0:Tyes101693
AFER243159:0:Tyes1718171717180
AFUL224325:0:Tyes-0-0
AHYD196024:0:Tyes2101427
AMAR234826:0:Tyes0-0-
AMAR329726:9:Tyes---0
AMET293826:0:Tyes-1874-0
ANAE240017:0:Tyes---0
AORE350688:0:Tyes-0-1051
APHA212042:0:Tyes0-0-
APLE416269:0:Tyes0121
APLE434271:0:Tno0121
ASAL382245:5:Tyes1014101310120
ASP1667:3:Tyes-0--
ASP232721:2:Tyes101-
ASP62928:0:Tyes6986996980
ASP62977:0:Tyes101-
ASP76114:2:Tyes010596
BABO262698:1:Tno010-
BAMB339670:3:Tno101-
BAMB398577:3:Tno101-
BAMY326423:0:Tyes---0
BANT260799:0:Tno-0-0
BANT261594:2:Tno-0-0
BANT568206:2:Tyes-0-0
BANT592021:2:Tno-0-0
BAPH198804:0:Tyes210-
BBAC264462:0:Tyes0-268-
BBAC360095:0:Tyes010-
BBRO257310:0:Tyes010701
BCAN483179:1:Tno010843
BCEN331271:0:Tno010-
BCEN331271:1:Tno---0
BCEN331272:3:Tyes1011022
BCER226900:1:Tyes---0
BCER288681:0:Tno---0
BCER315749:1:Tyes-0-0
BCER405917:1:Tyes---0
BCER572264:1:Tno---0
BCIC186490:0:Tyes012-
BFRA272559:1:Tyes3685--0
BFRA295405:0:Tno3984--0
BHAL272558:0:Tyes-0-0
BHEN283166:0:Tyes101-
BJAP224911:0:Fyes3671367036710
BLIC279010:0:Tyes---0
BLON206672:0:Tyes---0
BMAL243160:1:Tno101638
BMAL320388:1:Tno1838183718380
BMAL320389:1:Tyes1011095
BMEL224914:1:Tno8048038040
BMEL359391:1:Tno010760
BOVI236:1:Tyes010704
BPAR257311:0:Tno010930
BPER257313:0:Tyes010-
BPET94624:0:Tyes5475465470
BPSE272560:1:Tyes101586
BPSE320372:1:Tno101660
BPSE320373:1:Tno101687
BQUI283165:0:Tyes010-
BSP107806:2:Tyes-10-
BSP36773:1:Tyes---0
BSP36773:2:Tyes101-
BSP376:0:Tyes0169901131
BSUB:0:Tyes-0-0
BSUI204722:1:Tyes010-
BSUI470137:0:Tno---0
BSUI470137:1:Tno010-
BTHA271848:1:Tno010236
BTHE226186:0:Tyes3591164-0
BTHU281309:1:Tno---0
BTHU412694:1:Tno---0
BTRI382640:1:Tyes101-
BVIE269482:7:Tyes1896189518960
BWEI315730:4:Tyes-0-0
BXEN266265:1:Tyes---0
CACE272562:1:Tyes-0-3354
CAULO:0:Tyes1010
CBEI290402:0:Tyes---0
CBLO203907:0:Tyes012-
CBLO291272:0:Tno012-
CBOT36826:1:Tno-0-0
CBOT441770:0:Tyes-0-0
CBOT441771:0:Tno-0-0
CBOT441772:1:Tno-0-0
CBOT498213:1:Tno-0-0
CBOT508765:1:Tyes---0
CBOT515621:2:Tyes-0-429
CBOT536232:0:Tno-0-0
CBUR227377:1:Tyes101-
CBUR360115:1:Tno010-
CBUR434922:2:Tno010-
CCHL340177:0:Tyes-0-0
CCON360104:2:Tyes0-0-
CCUR360105:0:Tyes0-0-
CDIF272563:1:Tyes-0-3126
CFET360106:0:Tyes0-0-
CHOM360107:1:Tyes0-0-
CHUT269798:0:Tyes-0--
CHYD246194:0:Tyes-0-0
CJAP155077:0:Tyes2101
CJEJ192222:0:Tyes--0-
CJEJ195099:0:Tno--0-
CJEJ354242:2:Tyes--0-
CJEJ360109:0:Tyes--0-
CJEJ407148:0:Tno--0-
CKLU431943:1:Tyes-0--
CMIC443906:2:Tyes---0
CPEL335992:0:Tyes0-0-
CPER195103:0:Tno---0
CPHY357809:0:Tyes---0
CPSY167879:0:Tyes2628262926300
CRUT413404:0:Tyes010-
CSAL290398:0:Tyes010-
CSP501479:8:Fyes0101584
CSP78:2:Tyes1010
CTEP194439:0:Tyes-0--
CTET212717:0:Tyes-1231-0
CVES412965:0:Tyes0101
CVIO243365:0:Tyes1133113211330
DARO159087:0:Tyes1010
DDES207559:0:Tyes0101999
DGEO319795:1:Tyes0---
DHAF138119:0:Tyes---0
DNOD246195:0:Tyes3403413400
DOLE96561:0:Tyes1947194619470
DPSY177439:2:Tyes101-
DRAD243230:3:Tyes0-0-
DRED349161:0:Tyes-0-0
DSHI398580:5:Tyes0-0-
DVUL882:1:Tyes1613161216130
ECAN269484:0:Tyes0-0-
ECAR218491:0:Tyes1343134213410
ECHA205920:0:Tyes0-0-
ECOL199310:0:Tno2103652
ECOL316407:0:Tno2102973
ECOL331111:6:Tno2103274
ECOL362663:0:Tno0103214
ECOL364106:1:Tno2103427
ECOL405955:2:Tyes2103147
ECOL409438:6:Tyes2103287
ECOL413997:0:Tno2102882
ECOL439855:4:Tno0122455
ECOL469008:0:Tno0121450
ECOL481805:0:Tno0121454
ECOL585034:0:Tno2103099
ECOL585035:0:Tno2103332
ECOL585055:0:Tno2103305
ECOL585056:2:Tno2103322
ECOL585057:0:Tno0122496
ECOL585397:0:Tno2103464
ECOL83334:0:Tno2103683
ECOLI:0:Tno2103050
ECOO157:0:Tno2103590
EFER585054:1:Tyes210-
ELIT314225:0:Tyes1010
ERUM254945:0:Tyes0-0-
ERUM302409:0:Tno0-0-
ESP42895:1:Tyes1354135313520
FJOH376686:0:Tyes---0
FNOD381764:0:Tyes-0--
FNUC190304:0:Tyes02460246
FPHI484022:1:Tyes101-
FRANT:0:Tno010-
FSP106370:0:Tyes---0
FSUC59374:0:Tyes010-
FTUL351581:0:Tno010-
FTUL393011:0:Tno010-
FTUL393115:0:Tyes010-
FTUL401614:0:Tyes010-
FTUL418136:0:Tno101-
FTUL458234:0:Tno010-
GBET391165:0:Tyes101-
GFOR411154:0:Tyes-0--
GMET269799:1:Tyes1010
GOXY290633:5:Tyes101-
GSUL243231:0:Tyes1010
GTHE420246:1:Tyes---0
GURA351605:0:Tyes1010
GVIO251221:0:Tyes-0-936
HACI382638:1:Tyes0-0-
HARS204773:0:Tyes101-
HAUR316274:2:Tyes-0--
HBUT415426:0:Tyes---0
HCHE349521:0:Tyes1061106210610
HDUC233412:0:Tyes210-
HHAL349124:0:Tyes1010
HHEP235279:0:Tyes0---
HINF281310:0:Tyes760-
HINF374930:0:Tyes017-
HINF71421:0:Tno017-
HMOD498761:0:Tyes---0
HMUK485914:1:Tyes---0
HNEP81032:0:Tyes010-
HPY:0:Tno0-0-
HPYL357544:1:Tyes0-0-
HPYL85963:0:Tno0-0-
HSOM205914:1:Tyes012-
HSOM228400:0:Tno012-
HWAL362976:1:Tyes---0
ILOI283942:0:Tyes012252
JSP290400:1:Tyes0-0-
JSP375286:0:Tyes010285
KPNE272620:2:Tyes2103758
KRAD266940:2:Fyes-0-0
LBIF355278:2:Tyes---0
LBIF456481:2:Tno---0
LBOR355276:1:Tyes---0
LBOR355277:1:Tno---0
LCHO395495:0:Tyes5035025030
LINN272626:1:Tno---0
LINT189518:1:Tyes-0-0
LINT267671:1:Tno-0-0
LINT363253:3:Tyes101-
LMON169963:0:Tno---0
LMON265669:0:Tyes---0
LPNE272624:0:Tno101-
LPNE297245:1:Fno101-
LPNE297246:1:Fyes101-
LPNE400673:0:Tno101-
LSPH444177:1:Tyes---0
LWEL386043:0:Tyes---0
LXYL281090:0:Tyes---0
MACE188937:0:Tyes2046124720460
MAEO419665:0:Tyes---0
MAER449447:0:Tyes---0
MAQU351348:0:Tyes---0
MAQU351348:2:Tyes101-
MBAR269797:1:Tyes2587258925870
MBOV233413:0:Tno---0
MBOV410289:0:Tno---0
MBUR259564:0:Tyes-0-1728
MCAP243233:0:Tyes010-
MEXT419610:0:Tyes101-
MFLA265072:0:Tyes101-
MGIL350054:3:Tyes---0
MHUN323259:0:Tyes-0-744
MKAN190192:0:Tyes-0-0
MLOT266835:1:Tyes---0
MLOT266835:2:Tyes101-
MMAG342108:0:Tyes101345
MMAR368407:0:Tyes---0
MMAR394221:0:Tyes0101
MMAZ192952:0:Tyes028050886
MPET420662:0:Tyes---0
MPET420662:1:Tyes101-
MSME246196:0:Tyes---0
MSP164756:1:Tno---0
MSP189918:2:Tyes---0
MSP266779:3:Tyes010-
MSP400668:0:Tyes010-
MSP409:2:Tyes1447144814470
MSUC221988:0:Tyes0121
MTBCDC:0:Tno---0
MTBRV:0:Tno---0
MTHE349307:0:Tyes0525-525
MTUB336982:0:Tno---0
MTUB419947:0:Tyes---0
MVAN350058:0:Tyes-0-1196
MXAN246197:0:Tyes106680
NARO279238:0:Tyes010-
NEUR228410:0:Tyes101-
NEUT335283:2:Tyes101-
NFAR247156:2:Tyes-0-0
NGON242231:0:Tyes0101
NHAM323097:2:Tyes101-
NMEN122586:0:Tno1010
NMEN122587:0:Tyes1010
NMEN272831:0:Tno1010
NMEN374833:0:Tno1010
NMUL323848:3:Tyes5315305310
NOCE323261:1:Tyes4614624610
NPHA348780:2:Tyes---0
NSEN222891:0:Tyes0-0-
NSP103690:6:Tyes-0-725
NSP387092:0:Tyes--0-
NWIN323098:0:Tyes101-
OANT439375:5:Tyes2162152160
OCAR504832:0:Tyes0-0-
OIHE221109:0:Tyes---0
PAER208963:0:Tyes4214224210
PAER208964:0:Tno101400
PARC259536:0:Tyes010-
PATL342610:0:Tyes6336340-
PCAR338963:0:Tyes9869879860
PCRY335284:1:Tyes0101133
PDIS435591:0:Tyes16631241-0
PENT384676:0:Tyes101-
PFLU205922:0:Tyes010160
PFLU216595:1:Tyes012209
PFLU220664:0:Tyes010971
PGIN242619:0:Tyes-6640664
PHAL326442:1:Tyes210-
PING357804:0:Tyes0121422
PINT246198:1:Tyes01772--
PISL384616:0:Tyes---0
PLUM243265:0:Fyes012-
PLUT319225:0:Tyes-0--
PMEN399739:0:Tyes1011296
PMOB403833:0:Tyes-262-0
PMUL272843:1:Tyes2101
PNAP365044:8:Tyes1010
PPRO298386:1:Tyes---0
PPRO298386:2:Tyes012-
PPUT160488:0:Tno010-
PPUT351746:0:Tyes101-
PPUT76869:0:Tno012-
PRUM264731:0:Tyes-0-1877
PSP117:0:Tyes307003070-
PSP296591:2:Tyes010-
PSP312153:0:Tyes101-
PSP56811:2:Tyes1010
PSTU379731:0:Tyes101-
PSYR205918:0:Tyes010356
PSYR223283:2:Tyes010451
RAKA293614:0:Fyes0-0-
RALB246199:0:Tyes-0-3615
RBEL336407:0:Tyes0-0-
RCAN293613:0:Fyes0-0-
RCAS383372:0:Tyes-0--
RCON272944:0:Tno0-0-
RDEN375451:4:Tyes0-0315
RETL347834:5:Tyes1452145314520
REUT264198:2:Tyes---0
REUT264198:3:Tyes010-
REUT381666:1:Tyes---0
REUT381666:2:Tyes010-
RFEL315456:2:Tyes0-0-
RFER338969:1:Tyes3092309130920
RLEG216596:6:Tyes1562156315620
RMAS416276:1:Tyes0-0-
RMET266264:2:Tyes2792802790
RPAL258594:0:Tyes224396122430
RPAL316055:0:Tyes013950559
RPAL316056:0:Tyes1147255311470
RPAL316057:0:Tyes1403014032381
RPAL316058:0:Tyes0128501501
RPOM246200:1:Tyes6386396380
RPRO272947:0:Tyes0-0-
RRIC392021:0:Fno0-0-
RRIC452659:0:Tyes0-0-
RRUB269796:1:Tyes27914462790
RSOL267608:1:Tyes010625
RSP357808:0:Tyes-0-1295
RSPH272943:4:Tyes101-
RSPH349101:2:Tno101-
RSPH349102:5:Tyes010-
RTYP257363:0:Tno0-0-
RXYL266117:0:Tyes-0-775
SACI56780:0:Tyes1010
SAGA205921:0:Tno-0--
SAGA208435:0:Tno-0--
SAGA211110:0:Tyes-0--
SALA317655:1:Tyes010-
SARE391037:0:Tyes-0-0
SAVE227882:1:Fyes---0
SBAL399599:3:Tyes0121
SBAL402882:1:Tno0121
SBOY300268:1:Tyes0122062
SCO:2:Fyes---0
SDEG203122:0:Tyes010-
SDEN318161:0:Tyes2101
SDYS300267:1:Tyes0121940
SENT209261:0:Tno012-
SENT220341:0:Tno210-
SENT295319:0:Tno012-
SENT321314:2:Tno210-
SENT454169:2:Tno210-
SFLE198214:0:Tyes210-
SFLE373384:0:Tno210-
SFUM335543:0:Tyes925-9250
SGLO343509:3:Tyes1671661650
SHAE279808:0:Tyes---0
SHAL458817:0:Tyes2101
SHIGELLA:0:Tno210-
SLAC55218:1:Fyes101-
SLOI323850:0:Tyes2101
SMAR399550:0:Tyes---0
SMED366394:2:Tyes---0
SMED366394:3:Tyes010-
SMEL266834:1:Tyes---0
SMEL266834:2:Tyes010-
SONE211586:1:Tyes2101
SPEA398579:0:Tno2101
SPNE1313:0:Tyes-0--
SPNE170187:0:Tyes-0--
SPNE171101:0:Tno-0--
SPNE487213:0:Tno-0--
SPNE487214:0:Tno-0--
SPNE488221:0:Tno-0--
SPRO399741:1:Tyes1516151515140
SRUB309807:1:Tyes011551466-
SSED425104:0:Tyes0121
SSON300269:1:Tyes2102970
SSP292414:1:Tyes---0
SSP292414:2:Tyes0-0-
SSP321332:0:Tyes---0
SSP387093:0:Tyes0-0-
SSP644076:4:Fyes---0
SSP644076:7:Fyes0-0-
SSP84588:0:Tyes---0
SSP94122:1:Tyes0121
STHE292459:0:Tyes-0-0
STYP99287:1:Tyes210-
SWOL335541:0:Tyes-0--
TCRU317025:0:Tyes010931
TDEN243275:0:Tyes--0-
TDEN292415:0:Tyes101541
TDEN326298:0:Tyes0-0277
TERY203124:0:Tyes---0
TLET416591:0:Tyes-514-0
TMAR243274:0:Tyes-0-0
TPET390874:0:Tno-0-0
TROS309801:1:Tyes-47-0
TSP28240:0:Tyes-0-0
TTEN273068:0:Tyes-0-0
TTHE262724:1:Tyes-0--
TTHE300852:2:Tyes-0--
TTUR377629:0:Tyes0101672
VCHO:0:Tyes012-
VCHO:1:Fyes---0
VCHO345073:0:Tno---0
VCHO345073:1:Tno012-
VEIS391735:1:Tyes2212202210
VFIS312309:1:Tyes2101
VPAR223926:0:Tyes---0
VPAR223926:1:Tyes210-
VVUL196600:1:Tyes---0
VVUL196600:2:Tyes012-
VVUL216895:0:Tno---0
VVUL216895:1:Tno210-
WPIP80849:0:Tyes0-0-
WPIP955:0:Tyes0-0-
WSUC273121:0:Tyes0-0-
XAUT78245:1:Tyes3167316631670
XAXO190486:0:Tyes010-
XCAM190485:0:Tyes101-
XCAM314565:0:Tno010-
XCAM316273:0:Tno101-
XCAM487884:0:Tno010-
XFAS160492:2:Tno010-
XFAS183190:1:Tyes010-
XFAS405440:0:Tno010-
XORY291331:0:Tno101-
XORY342109:0:Tyes101-
XORY360094:0:Tno020-
YENT393305:1:Tyes1202120112000
YPES187410:5:Tno1069106810670
YPES214092:3:Tno2101748
YPES349746:2:Tno0121145
YPES360102:3:Tyes0121080
YPES377628:2:Tno1403140414050
YPES386656:2:Tno0121455
YPSE273123:2:Tno1950195119520
YPSE349747:2:Tno2101946
ZMOB264203:0:Tyes0-0-



Back to top