CANDIDATE ID: 937

CANDIDATE ID: 937

NUMBER OF GENES: 4
AVERAGE SCORE:    9.9949800e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    7.5000000e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7889 (lptG) (b4262)
   Products of gene:
     - G7889-MONOMER (LptG)
     - ABC-53-CPLX (LptABCFG ABC transporter)

- G7888 (lptF) (b4261)
   Products of gene:
     - G7888-MONOMER (LptF)
     - ABC-53-CPLX (LptABCFG ABC transporter)

- EG12310 (pepB) (b2523)
   Products of gene:
     - EG12310-MONOMER (aminopeptidase B)
       Reactions:
        EC# 3.4.11.23

- EG10694 (pepA) (b4260)
   Products of gene:
     - EG10694-MONOMER (aminopeptidase A/I)
       Regulatees:
        TU0-14175 (pepA)
        TU00110 (carAB)
     - CPLX0-3061 (aminopeptidase A/I)
       Reactions:
        a peptide + H2O  ->  a standard alpha amino acid + a peptide
         In pathways
         PWY-5988 (PWY-5988)
         PWY-6018 (PWY-6018)



Back to top


ORGANISMS CONTAINING AT LEAST 3 GENES FROM THE GROUP:

Total number of orgs: 230
Effective number of orgs (counting one per cluster within 468 clusters): 157

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM43
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317584
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329534
YPES386656 ncbi Yersinia pestis Pestoides F4
YPES377628 ncbi Yersinia pestis Nepal5164
YPES360102 ncbi Yersinia pestis Antiqua4
YPES349746 ncbi Yersinia pestis Angola4
YPES214092 ncbi Yersinia pestis CO924
YPES187410 ncbi Yersinia pestis KIM 104
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80814
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A4
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110184
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103314
XFAS405440 ncbi Xylella fastidiosa M123
XFAS183190 ncbi Xylella fastidiosa Temecula13
XFAS160492 ncbi Xylella fastidiosa 9a5c3
XCAM487884 Xanthomonas campestris pv. paulliniae4
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-104
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80044
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339134
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3064
VVUL216895 ncbi Vibrio vulnificus CMCP64
VVUL196600 ncbi Vibrio vulnificus YJ0164
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106334
VFIS312309 ncbi Vibrio fischeri ES1144
VEIS391735 ncbi Verminephrobacter eiseniae EF01-23
VCHO345073 ncbi Vibrio cholerae O3954
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169614
TTUR377629 ncbi Teredinibacter turnerae T79014
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252593
TCRU317025 ncbi Thiomicrospira crunogena XCL-23
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT24
SSP94122 ncbi Shewanella sp. ANA-34
SSP644076 Silicibacter sp. TrichCH4B3
SSP292414 ncbi Ruegeria sp. TM10403
SSON300269 ncbi Shigella sonnei Ss0464
SSED425104 ncbi Shewanella sediminis HAW-EB34
SPRO399741 ncbi Serratia proteamaculans 5684
SPEA398579 ncbi Shewanella pealeana ATCC 7003454
SONE211586 ncbi Shewanella oneidensis MR-14
SMEL266834 ncbi Sinorhizobium meliloti 10213
SLOI323850 ncbi Shewanella loihica PV-44
SLAC55218 Ruegeria lacuscaerulensis3
SHIGELLA ncbi Shigella flexneri 2a str. 2457T4
SHAL458817 ncbi Shewanella halifaxensis HAW-EB44
SGLO343509 ncbi Sodalis glossinidius morsitans4
SFLE373384 ncbi Shigella flexneri 5 str. 84014
SFLE198214 ncbi Shigella flexneri 2a str. 3014
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4764
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B674
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91504
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT184
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty24
SDYS300267 ncbi Shigella dysenteriae Sd1974
SDEN318161 ncbi Shewanella denitrificans OS2174
SDEG203122 ncbi Saccharophagus degradans 2-404
SBOY300268 ncbi Shigella boydii Sb2274
SBAL402882 ncbi Shewanella baltica OS1854
SBAL399599 ncbi Shewanella baltica OS1954
SALA317655 ncbi Sphingopyxis alaskensis RB22563
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170253
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170293
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.13
RSOL267608 ncbi Ralstonia solanacearum GMI10003
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111703
RRIC452659 ncbi Rickettsia rickettsii Iowa3
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith3
RPOM246200 ncbi Ruegeria pomeroyi DSS-33
RPAL316058 ncbi Rhodopseudomonas palustris HaA23
RPAL316057 ncbi Rhodopseudomonas palustris BisB53
RPAL316055 ncbi Rhodopseudomonas palustris BisA533
RPAL258594 ncbi Rhodopseudomonas palustris CGA0093
RMET266264 ncbi Ralstonia metallidurans CH343
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38413
RFER338969 ncbi Rhodoferax ferrireducens T1183
RFEL315456 ncbi Rickettsia felis URRWXCal23
REUT381666 ncbi Ralstonia eutropha H164
REUT264198 ncbi Ralstonia eutropha JMP1344
RETL347834 ncbi Rhizobium etli CFN 423
RDEN375451 ncbi Roseobacter denitrificans OCh 1143
RCON272944 ncbi Rickettsia conorii Malish 73
RCAN293613 ncbi Rickettsia canadensis McKiel3
RAKA293614 ncbi Rickettsia akari Hartford3
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30004
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a3
PSTU379731 ncbi Pseudomonas stutzeri A15013
PSP56811 Psychrobacter sp.3
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-13
PSP296591 ncbi Polaromonas sp. JS6663
PPUT76869 ncbi Pseudomonas putida GB-14
PPUT351746 ncbi Pseudomonas putida F14
PPUT160488 ncbi Pseudomonas putida KT24404
PPRO298386 ncbi Photobacterium profundum SS94
PNAP365044 ncbi Polaromonas naphthalenivorans CJ23
PMUL272843 ncbi Pasteurella multocida multocida Pm704
PMEN399739 ncbi Pseudomonas mendocina ymp4
PLUT319225 ncbi Chlorobium luteolum DSM 2733
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO14
PING357804 ncbi Psychromonas ingrahamii 374
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1254
PFLU220664 ncbi Pseudomonas fluorescens Pf-54
PFLU216595 ncbi Pseudomonas fluorescens SBW254
PFLU205922 ncbi Pseudomonas fluorescens Pf0-14
PENT384676 ncbi Pseudomonas entomophila L484
PCRY335284 ncbi Psychrobacter cryohalolentis K53
PCAR338963 ncbi Pelobacter carbinolicus DSM 23803
PATL342610 ncbi Pseudoalteromonas atlantica T6c4
PARC259536 ncbi Psychrobacter arcticus 273-43
PAER208964 ncbi Pseudomonas aeruginosa PAO14
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA143
OCAR504832 ncbi Oligotropha carboxidovorans OM53
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2553
NOCE323261 ncbi Nitrosococcus oceani ATCC 197073
NMUL323848 ncbi Nitrosospira multiformis ATCC 251963
NMEN374833 ncbi Neisseria meningitidis 0534424
NMEN272831 ncbi Neisseria meningitidis FAM184
NMEN122587 ncbi Neisseria meningitidis Z24914
NGON242231 ncbi Neisseria gonorrhoeae FA 10904
NEUT335283 ncbi Nitrosomonas eutropha C913
NEUR228410 ncbi Nitrosomonas europaea ATCC 197183
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124443
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E4
MSP400668 ncbi Marinomonas sp. MWYL13
MPET420662 ncbi Methylibium petroleiphilum PM14
MFLA265072 ncbi Methylobacillus flagellatus KT4
MEXT419610 ncbi Methylobacterium extorquens PA13
MCAP243233 ncbi Methylococcus capsulatus Bath3
MAQU351348 ncbi Marinobacter aquaeolei VT84
LPNE400673 ncbi Legionella pneumophila Corby4
LPNE297246 ncbi Legionella pneumophila Paris4
LPNE297245 ncbi Legionella pneumophila Lens4
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 14
LCHO395495 ncbi Leptothrix cholodnii SP-64
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785784
JSP375286 ncbi Janthinobacterium sp. Marseille3
JSP290400 ncbi Jannaschia sp. CCS13
ILOI283942 ncbi Idiomarina loihiensis L2TR4
HSOM228400 ncbi Haemophilus somnus 23364
HSOM205914 ncbi Haemophilus somnus 129PT4
HNEP81032 Hyphomonas neptunium4
HINF71421 ncbi Haemophilus influenzae Rd KW204
HINF374930 ncbi Haemophilus influenzae PittEE4
HINF281310 ncbi Haemophilus influenzae 86-028NP4
HHAL349124 ncbi Halorhodospira halophila SL14
HDUC233412 ncbi Haemophilus ducreyi 35000HP4
HCHE349521 ncbi Hahella chejuensis KCTC 23963
HARS204773 ncbi Herminiimonas arsenicoxydans3
GOXY290633 ncbi Gluconobacter oxydans 621H3
GBET391165 ncbi Granulibacter bethesdensis CGDNIH13
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-003
FTUL418136 ncbi Francisella tularensis tularensis WY96-34183
FTUL401614 ncbi Francisella novicida U1123
FTUL393115 ncbi Francisella tularensis tularensis FSC1983
FTUL393011 ncbi Francisella tularensis holarctica OSU183
FTUL351581 Francisella tularensis holarctica FSC2003
FRANT ncbi Francisella tularensis tularensis SCHU S43
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250173
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255863
ESP42895 Enterobacter sp.4
ELIT314225 ncbi Erythrobacter litoralis HTCC25943
EFER585054 ncbi Escherichia fergusonii ATCC 354694
ECOO157 ncbi Escherichia coli O157:H7 EDL9334
ECOL83334 Escherichia coli O157:H74
ECOL585397 ncbi Escherichia coli ED1a4
ECOL585057 ncbi Escherichia coli IAI394
ECOL585056 ncbi Escherichia coli UMN0264
ECOL585055 ncbi Escherichia coli 559894
ECOL585035 ncbi Escherichia coli S884
ECOL585034 ncbi Escherichia coli IAI14
ECOL481805 ncbi Escherichia coli ATCC 87394
ECOL469008 ncbi Escherichia coli BL21(DE3)4
ECOL439855 ncbi Escherichia coli SMS-3-54
ECOL413997 ncbi Escherichia coli B str. REL6064
ECOL409438 ncbi Escherichia coli SE114
ECOL405955 ncbi Escherichia coli APEC O14
ECOL364106 ncbi Escherichia coli UTI894
ECOL362663 ncbi Escherichia coli 5364
ECOL331111 ncbi Escherichia coli E24377A4
ECOL316407 ncbi Escherichia coli K-12 substr. W31104
ECOL199310 ncbi Escherichia coli CFT0734
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10434
DSHI398580 ncbi Dinoroseobacter shibae DFL 123
DARO159087 ncbi Dechloromonas aromatica RCB3
CVIO243365 ncbi Chromobacterium violaceum ATCC 124723
CTEP194439 ncbi Chlorobium tepidum TLS3
CSP78 Caulobacter sp.4
CSAL290398 ncbi Chromohalobacter salexigens DSM 30433
CPSY167879 ncbi Colwellia psychrerythraea 34H4
CJAP155077 Cellvibrio japonicus4
CCHL340177 ncbi Chlorobium chlorochromatii CaD33
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1113
CBUR360115 ncbi Coxiella burnetii RSA 3313
CBUR227377 ncbi Coxiella burnetii RSA 4933
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN4
CBLO203907 ncbi Candidatus Blochmannia floridanus3
CAULO ncbi Caulobacter crescentus CB154
BVIE269482 ncbi Burkholderia vietnamiensis G44
BTHA271848 ncbi Burkholderia thailandensis E2644
BSP376 Bradyrhizobium sp.3
BSP36773 Burkholderia sp.4
BPSE320373 ncbi Burkholderia pseudomallei 6684
BPSE320372 ncbi Burkholderia pseudomallei 1710b4
BPSE272560 ncbi Burkholderia pseudomallei K962434
BPET94624 Bordetella petrii3
BPER257313 ncbi Bordetella pertussis Tohama I4
BPAR257311 ncbi Bordetella parapertussis 128224
BMAL320389 ncbi Burkholderia mallei NCTC 102474
BMAL320388 ncbi Burkholderia mallei SAVP14
BMAL243160 ncbi Burkholderia mallei ATCC 233444
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1103
BCEN331272 ncbi Burkholderia cenocepacia HI24244
BCEN331271 ncbi Burkholderia cenocepacia AU 10544
BBRO257310 ncbi Bordetella bronchiseptica RB504
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1004
BAMB398577 ncbi Burkholderia ambifaria MC40-64
BAMB339670 ncbi Burkholderia ambifaria AMMD4
ASP76114 ncbi Aromatoleum aromaticum EbN14
ASP62977 ncbi Acinetobacter sp. ADP13
ASP62928 ncbi Azoarcus sp. BH723
ASP232721 ncbi Acidovorax sp. JS424
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4494
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL034
APLE416269 ncbi Actinobacillus pleuropneumoniae L204
AHYD196024 Aeromonas hydrophila dhakensis4
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-13
ACRY349163 ncbi Acidiphilium cryptum JF-53
ACAU438753 ncbi Azorhizobium caulinodans ORS 5713
ABOR393595 ncbi Alcanivorax borkumensis SK23
ABAU360910 ncbi Bordetella avium 197N3
AAVE397945 ncbi Acidovorax citrulli AAC00-14


Names of the homologs of the genes in the group in each of these orgs
  G7889   G7888   EG12310   EG10694   
ZMOB264203 ZMO1394ZMO0806ZMO1309
YPSE349747 YPSIP31758_3541YPSIP31758_3542YPSIP31758_1175YPSIP31758_3543
YPSE273123 YPTB0533YPTB0532YPTB2852YPTB0531
YPES386656 YPDSF_3249YPDSF_3250YPDSF_2234YPDSF_3251
YPES377628 YPN_0649YPN_0648YPN_1248YPN_0647
YPES360102 YPA_2940YPA_2941YPA_2330YPA_2942
YPES349746 YPANGOLA_A4049YPANGOLA_A4048YPANGOLA_A0428YPANGOLA_A4047
YPES214092 YPO3439YPO3440YPO2889YPO3441
YPES187410 Y0748Y0747Y1342Y0746
YENT393305 YE0502YE0501YE1064YE0500
XORY360094 XOOORF_4577XOOORF_4578XOOORF_4937XOOORF_4579
XORY342109 XOO0762XOO0761XOO0413XOO0760
XORY291331 XOO0836XOO0835XOO0450XOO0834
XFAS405440 XFASM12_0116XFASM12_0115XFASM12_0114
XFAS183190 PD_0108PD_0107PD_0106
XFAS160492 XF0140XF0139XF0138
XCAM487884 XCC-B100_3703XCC-B100_3704XCC-B100_4093XCC-B100_3705
XCAM316273 XCAORF_0803XCAORF_0802XCAORF_0372XCAORF_0801
XCAM314565 XC_3583XC_3584XC_3992XC_3585
XCAM190485 XCC0651XCC0650XCC3904XCC0649
XAXO190486 XAC3554XAC3555XAC3987XAC3556
VVUL216895 VV1_1478VV1_1477VV1_0431VV1_1476
VVUL196600 VV2905VV2906VV0762VV2907
VPAR223926 VP2642VP2643VP0603VP2644
VFIS312309 VF0415VF0414VF0624VF0413
VEIS391735 VEIS_4924VEIS_4923VEIS_4922
VCHO345073 VC0395_A2081VC0395_A2082VC0395_A0284VC0395_A2083
VCHO VC2499VC2500VC0755VC2501
TTUR377629 TERTU_2715TERTU_2716TERTU_2717TERTU_2717
TDEN292415 TBD_0582TBD_0581TBD_0580
TCRU317025 TCR_1746TCR_1747TCR_1748
STYP99287 STM4480STM4479STM2536STM4477
SSP94122 SHEWANA3_3004SHEWANA3_3005SHEWANA3_3402SHEWANA3_3006
SSP644076 SCH4B_4335SCH4B_0946SCH4B_4337
SSP292414 TM1040_0948TM1040_3455TM1040_0950
SSON300269 SSO_4447SSO_4446SSO_2605SSO_4445
SSED425104 SSED_1016SSED_1015SSED_3897SSED_1014
SPRO399741 SPRO_0564SPRO_0563SPRO_3620SPRO_0562
SPEA398579 SPEA_0912SPEA_0911SPEA_0700SPEA_0910
SONE211586 SO_1370SO_1369SO_0876SO_1368
SMEL266834 SMC00583SMC00585SMC00585
SLOI323850 SHEW_0941SHEW_0940SHEW_3127SHEW_0939
SLAC55218 SL1157_2634SL1157_1161SL1157_2635
SHIGELLA YJGQYJGPPEPBPEPA
SHAL458817 SHAL_0964SHAL_0963SHAL_0756SHAL_0962
SGLO343509 SG2107SG2108SG1768SG2109
SFLE373384 SFV_4231SFV_4232SFV_2571SFV_4233
SFLE198214 AAN45646.1AAN45647.1AAN44069.1AAN45648.1
SENT454169 SEHA_C4884SEHA_C4883SEHA_C2798SEHA_C4882
SENT321314 SCH_4336SCH_4335SCH_2531SCH_4333
SENT295319 SPA4280SPA4279SPA0330SPA4278
SENT220341 STY4818STY4817STY2782STY4816
SENT209261 T4514T4513T0320T4512
SDYS300267 SDY_4286SDY_4285SDY_2719SDY_4284
SDEN318161 SDEN_0873SDEN_0872SDEN_3168SDEN_0871
SDEG203122 SDE_1374SDE_1373SDE_1372SDE_1372
SBOY300268 SBO_4178SBO_4179SBO_2547SBO_4180
SBAL402882 SHEW185_3117SHEW185_3118SHEW185_0851SHEW185_3119
SBAL399599 SBAL195_3260SBAL195_3261SBAL195_0886SBAL195_3262
SALA317655 SALA_2177SALA_0713SALA_1761
RSPH349102 RSPH17025_1120RSPH17025_0038RSPH17025_1122
RSPH349101 RSPH17029_1545RSPH17029_0047RSPH17029_1543
RSPH272943 RSP_2901RSP_1379RSP_2899
RSOL267608 RSC2417RSC2416RSC2415
RRUB269796 RRU_A3075RRU_A0138RRU_A0454
RRIC452659 RRIOWA_1403RRIOWA_0226RRIOWA_0226
RRIC392021 A1G_06555A1G_01050A1G_01050
RPOM246200 SPO_2454SPO_3717SPO_2453
RPAL316058 RPB_2479RPB_1777RPB_2481
RPAL316057 RPD_2967RPD_3527RPD_2965
RPAL316055 RPE_3293RPE_3758RPE_3291
RPAL258594 RPA3062RPA3685RPA3060
RMET266264 RMET_2809RMET_2808RMET_2807
RLEG216596 RL1568RL1571RL1571
RFER338969 RFER_2114RFER_2115RFER_2116
RFEL315456 RF_1233RF_1143RF_1143
REUT381666 H16_A2992H16_A2991H16_A2990H16_A2990
REUT264198 REUT_A2685REUT_A2684REUT_A2683REUT_A2683
RETL347834 RHE_CH01453RHE_CH00213RHE_CH01456
RDEN375451 RD1_3120RD1_3118RD1_3118
RCON272944 RC1199RC0184RC0184
RCAN293613 A1E_04940A1E_00730A1E_00730
RAKA293614 A1C_06005A1C_01025A1C_01025
PSYR223283 PSPTO_1273PSPTO_1272PSPTO_1271PSPTO_1271
PSYR205918 PSYR_1093PSYR_1092PSYR_1091
PSTU379731 PST_3056PST_3057PST_3058
PSP56811 PSYCPRWF_0055PSYCPRWF_0054PSYCPRWF_0053
PSP312153 PNUC_0621PNUC_0622PNUC_0623
PSP296591 BPRO_2406BPRO_2407BPRO_2408
PPUT76869 PPUTGB1_0988PPUTGB1_0987PPUTGB1_0986PPUTGB1_0986
PPUT351746 PPUT_1020PPUT_1019PPUT_1018PPUT_1018
PPUT160488 PP_0983PP_0982PP_0980PP_0980
PPRO298386 PBPRA0486PBPRA0485PBPRA0757PBPRA0484
PNAP365044 PNAP_2171PNAP_2170PNAP_2169
PMUL272843 PM0197PM0196PM1029PM0195
PMEN399739 PMEN_3525PMEN_3526PMEN_3527PMEN_3527
PLUT319225 PLUT_0389PLUT_0954PLUT_0954
PLUM243265 PLU4479PLU4480PLU3276PLU4481
PING357804 PING_0397PING_0396PING_1331PING_0395
PHAL326442 PSHAA2421PSHAA2422PSHAA0608PSHAA2423
PFLU220664 PFL_1068PFL_1067PFL_1066PFL_1066
PFLU216595 PFLU1057PFLU1056PFLU1055PFLU1055
PFLU205922 PFL_0991PFL_0990PFL_0989PFL_0989
PENT384676 PSEEN4441PSEEN4442PSEEN4443PSEEN4443
PCRY335284 PCRYO_0054PCRYO_0053PCRYO_0051
PCAR338963 PCAR_1923PCAR_0200PCAR_0200
PATL342610 PATL_3560PATL_3561PATL_3939PATL_3562
PARC259536 PSYC_0046PSYC_0045PSYC_0043
PAER208964 PA3827PA3828PA3831PA3831
PAER208963 PA14_14510PA14_14500PA14_14470
OCAR504832 OCAR_6354OCAR_7426OCAR_6352
NWIN323098 NWI_1678NWI_0294NWI_1676
NOCE323261 NOC_1909NOC_1910NOC_0289
NMUL323848 NMUL_A0403NMUL_A0746NMUL_A0746
NMEN374833 NMCC_1474NMCC_1472NMCC_1473NMCC_1473
NMEN272831 NMC1491NMC1490NMC1489NMC1489
NMEN122587 NMA1760NMA1759NMA1758NMA1758
NGON242231 NGO1229NGO1228NGO1227NGO1227
NEUT335283 NEUT_1103NEUT_0599NEUT_0599
NEUR228410 NE0802NE0441NE0441
NARO279238 SARO_0495SARO_1112SARO_0890
MSUC221988 MS1548MS1549MS0667MS1550
MSP400668 MMWYL1_4009MMWYL1_4008MMWYL1_4007
MPET420662 MPE_A1944MPE_A1943MPE_A1942MPE_A1942
MFLA265072 MFLA_0220MFLA_0221MFLA_0222MFLA_0222
MEXT419610 MEXT_3649MEXT_2976MEXT_3651
MCAP243233 MCA_2101MCA_2100MCA_2099
MAQU351348 MAQU_0963MAQU_0962MAQU_0961MAQU_0961
LPNE400673 LPC_0512LPC_0511LPC_0507LPC_0510
LPNE297246 LPP2682LPP2683LPP2687LPP2684
LPNE297245 LPL2554LPL2555LPL2559LPL2556
LPNE272624 LPG2629LPG2630LPG2634LPG2631
LCHO395495 LCHO_2597LCHO_2596LCHO_2595LCHO_2595
KPNE272620 GKPORF_B4028GKPORF_B4027GKPORF_B2189GKPORF_B4025
JSP375286 MMA_2459MMA_2460MMA_2461
JSP290400 JANN_1813JANN_0106JANN_1815
ILOI283942 IL1946IL1947IL2248IL1948
HSOM228400 HSM_1753HSM_1754HSM_0713HSM_1755
HSOM205914 HS_0518HS_0517HS_0388HS_0516
HNEP81032 HNE_1587HNE_2274HNE_3007HNE_2273
HINF71421 HI_1703HI_1704HI_1705HI_1705
HINF374930 CGSHIEE_03515CGSHIEE_03510CGSHIEE_07655CGSHIEE_03505
HINF281310 NTHI2011NTHI2012NTHI1038NTHI2013
HHAL349124 HHAL_0679HHAL_0680HHAL_0681HHAL_0681
HDUC233412 HD_0552HD_0553HD_1169HD_0555
HCHE349521 HCH_01934HCH_01933HCH_01931
HARS204773 HEAR2399HEAR2400HEAR2401
GOXY290633 GOX0299GOX1918GOX0293
GBET391165 GBCGDNIH1_0250GBCGDNIH1_2202GBCGDNIH1_2202
FTUL458234 FTA_1566FTA_1168FTA_1564
FTUL418136 FTW_1486FTW_1400FTW_1484
FTUL401614 FTN_0658FTN_0780FTN_0660
FTUL393115 FTF1320FTF1094CFTF1318C
FTUL393011 FTH_1435FTH_1081FTH_1433
FTUL351581 FTL_1481FTL_1108FTL_1479
FRANT FT.1322FT.1095CPEPA
FPHI484022 FPHI_0163FPHI_1677FPHI_0161
FNUC190304 FN1030FN1906FN1906
ESP42895 ENT638_3646ENT638_3647ENT638_3020ENT638_3648
ELIT314225 ELI_10195ELI_01680ELI_08880
EFER585054 EFER_4344EFER_4343EFER_0649EFER_4342
ECOO157 YJGQYJGPPEPBPEPA
ECOL83334 ECS5239ECS5238ECS3389ECS5237
ECOL585397 ECED1_5115ECED1_5114ECED1_2954ECED1_5113
ECOL585057 ECIAI39_4735ECIAI39_4734ECIAI39_2724ECIAI39_4733
ECOL585056 ECUMN_4794ECUMN_4793ECUMN_2843ECUMN_4792
ECOL585055 EC55989_4820EC55989_4819EC55989_2808EC55989_4818
ECOL585035 ECS88_4849ECS88_4848ECS88_2699ECS88_4847
ECOL585034 ECIAI1_4493ECIAI1_4492ECIAI1_2575ECIAI1_4491
ECOL481805 ECOLC_3750ECOLC_3751ECOLC_1154ECOLC_3752
ECOL469008 ECBD_3774ECBD_3775ECBD_1161ECBD_3776
ECOL439855 ECSMS35_4743ECSMS35_4742ECSMS35_2675ECSMS35_4740
ECOL413997 ECB_04128ECB_04127ECB_02415ECB_04126
ECOL409438 ECSE_4568ECSE_4567ECSE_2809ECSE_4566
ECOL405955 APECO1_2132APECO1_2133APECO1_4001APECO1_2134
ECOL364106 UTI89_C4869UTI89_C4868UTI89_C2845UTI89_C4866
ECOL362663 ECP_4511ECP_4510ECP_2528ECP_4509
ECOL331111 ECE24377A_4835ECE24377A_4834ECE24377A_2807ECE24377A_4832
ECOL316407 ECK4255:JW5760:B4262ECK4254:JW4218:B4261ECK2520:JW2507:B2523ECK4253:JW4217:B4260
ECOL199310 C5363C5362C3048C5360
ECAR218491 ECA0406ECA0405ECA3230ECA0404
DSHI398580 DSHI_1189DSHI_3234DSHI_1191
DARO159087 DARO_3080DARO_3081DARO_3082
CVIO243365 CV_2916CV_2915CV_2914
CTEP194439 CT_1549CT_1180CT_1180
CSP78 CAUL_2529CAUL_2530CAUL_2531CAUL_2531
CSAL290398 CSAL_2916CSAL_2917CSAL_2918
CPSY167879 CPS_0743CPS_0741CPS_4956CPS_0740
CJAP155077 CJA_1450CJA_1449CJA_1448CJA_1448
CCHL340177 CAG_0302CAG_0823CAG_0823
CBUR434922 COXBU7E912_0876COXBU7E912_0875COXBU7E912_1491
CBUR360115 COXBURSA331_A1141COXBURSA331_A1142COXBURSA331_A0686
CBUR227377 CBU_0810CBU_0809CBU_0572
CBLO291272 BPEN_037BPEN_036BPEN_035BPEN_035
CBLO203907 BFL037BFL036BFL035
CAULO CC1690CC1691CC0977CC1692
BVIE269482 BCEP1808_2551BCEP1808_2550BCEP1808_2549BCEP1808_2549
BTHA271848 BTH_I0821BTH_I0822BTH_I0823BTH_I0823
BSP376 BRADO3326BRADO1011BRADO3328
BSP36773 BCEP18194_A5799BCEP18194_A5798BCEP18194_A5797BCEP18194_A5797
BPSE320373 BURPS668_1013BURPS668_1014BURPS668_1015BURPS668_1015
BPSE320372 BURPS1710B_A1227BURPS1710B_A1228BURPS1710B_A1229BURPS1710B_A1229
BPSE272560 BPSL0963BPSL0964BPSL0965BPSL0965
BPET94624 BPET0565BPET1772BPET1771
BPER257313 BP0325BP2420BP2421BP2421
BPAR257311 BPP3926BPP3284BPP3285BPP3285
BMAL320389 BMA10247_1655BMA10247_1654BMA10247_1653BMA10247_1653
BMAL320388 BMASAVP1_A2341BMASAVP1_A2340BMASAVP1_A2339BMASAVP1_A2339
BMAL243160 BMA_0670BMA_0671BMA_0672BMA_0672
BJAP224911 BLL4106BLL1431BLR4108
BCEN331272 BCEN2424_2468BCEN2424_2467BCEN2424_2466BCEN2424_2466
BCEN331271 BCEN_1857BCEN_1856BCEN_1855BCEN_1855
BBRO257310 BB4399BB3735BB3736BB3736
BBAC264462 BD2760BD2471BD2554BD3755
BAMB398577 BAMMC406_2385BAMMC406_2384BAMMC406_2383BAMMC406_2383
BAMB339670 BAMB_2517BAMB_2516BAMB_2515BAMB_2515
ASP76114 EBA7171EBA7173EBA7174EBA7174
ASP62977 ACIAD0255ACIAD0254ACIAD0253
ASP62928 AZO2902AZO2903AZO2904
ASP232721 AJS_1919AJS_1920AJS_1921AJS_1921
ASAL382245 ASA_3825ASA_3824ASA_2604ASA_3823
APLE434271 APJL_1119APJL_1118APJL_0409APJL_1116
APLE416269 APL_1104APL_1103APL_0388APL_1101
AHYD196024 AHA_3698AHA_3699AHA_1753AHA_3700
AEHR187272 MLG_0560MLG_0559MLG_0558
ACRY349163 ACRY_2627ACRY_0419ACRY_1204
ACAU438753 AZC_4324AZC_0280AZC_0537
ABOR393595 ABO_0497ABO_0496ABO_0495
ABAU360910 BAV3006BAV1138BAV1137
AAVE397945 AAVE_3164AAVE_3163AAVE_3162AAVE_3162


Organism features enriched in list (features available for 216 out of the 230 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 5.500e-61692
Disease:Bubonic_plague 0.002474666
Disease:Dysentery 0.002474666
Disease:Gastroenteritis 0.00319411013
Disease:Tularemia 0.006778755
Endospores:No 1.173e-1338211
GC_Content_Range4:0-40 2.739e-2128213
GC_Content_Range4:40-60 2.102e-6109224
GC_Content_Range4:60-100 3.750e-779145
GC_Content_Range7:0-30 5.335e-7347
GC_Content_Range7:30-40 3.351e-1325166
GC_Content_Range7:50-60 2.117e-763107
GC_Content_Range7:60-70 2.306e-979134
Genome_Size_Range5:0-2 2.683e-1519155
Genome_Size_Range5:2-4 0.000330255197
Genome_Size_Range5:4-6 7.967e-18115184
Genome_Size_Range5:6-10 0.00154472747
Genome_Size_Range9:0-1 0.0003615227
Genome_Size_Range9:1-2 2.161e-1117128
Genome_Size_Range9:2-3 0.002425632120
Genome_Size_Range9:4-5 6.596e-85996
Genome_Size_Range9:5-6 2.604e-85688
Genome_Size_Range9:6-8 0.00014282538
Gram_Stain:Gram_Neg 2.159e-45200333
Habitat:Multiple 0.000899582178
Habitat:Specialized 0.0005501953
Motility:No 2.751e-927151
Motility:Yes 6.103e-9132267
Optimal_temp.:- 0.0017000111257
Optimal_temp.:25-30 1.344e-71819
Optimal_temp.:35-37 0.00004591213
Optimal_temp.:37 0.001009826106
Oxygen_Req:Aerobic 0.001327984185
Oxygen_Req:Anaerobic 1.224e-1110102
Oxygen_Req:Facultative 0.000020697201
Pathogenic_in:No 0.003751770226
Pathogenic_in:Plant 0.00352441115
Shape:Coccus 1.258e-8982
Shape:Rod 8.588e-20179347
Shape:Sphere 0.0082576219
Shape:Spiral 0.0001277334
Temp._range:Mesophilic 0.0029862187473
Temp._range:Psychrophilic 0.001877289
Temp._range:Thermophilic 0.0000122235



Back to top


ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 289
Effective number of orgs (counting one per cluster within 468 clusters): 228

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
WSUC273121 ncbi Wolinella succinogenes DSM 17401
WPIP955 Wolbachia pipientis1
WPIP80849 Wolbachia endosymbiont of Brugia malayi1
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB40
TSP28240 Thermotoga sp.0
TSP1755 Thermoanaerobacter sp.0
TROS309801 ncbi Thermomicrobium roseum DSM 51591
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332230
TPET390874 ncbi Thermotoga petrophila RKU-10
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TMAR243274 ncbi Thermotoga maritima MSB80
TLET416591 ncbi Thermotoga lettingae TMO0
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TERY203124 ncbi Trichodesmium erythraeum IMS1011
TELO197221 ncbi Thermosynechococcus elongatus BP-11
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12511
TDEN243275 ncbi Treponema denticola ATCC 354051
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen0
STRO369723 ncbi Salinispora tropica CNB-4401
STOK273063 ncbi Sulfolobus tokodaii 70
STHE322159 ncbi Streptococcus thermophilus LMD-90
STHE299768 ncbi Streptococcus thermophilus CNRZ10660
STHE292459 ncbi Symbiobacterium thermophilum IAM 148631
STHE264199 ncbi Streptococcus thermophilus LMG 183110
SSUI391296 ncbi Streptococcus suis 98HAH330
SSUI391295 ncbi Streptococcus suis 05ZYH330
SSP387093 ncbi Sulfurovum sp. NBC37-10
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)1
SSP321327 ncbi Synechococcus sp. JA-3-3Ab1
SSP1148 ncbi Synechocystis sp. PCC 68031
SSOL273057 ncbi Sulfolobus solfataricus P20
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153050
SRUB309807 ncbi Salinibacter ruber DSM 138550
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370552 ncbi Streptococcus pyogenes MGAS102700
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103940
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SPNE488221 ncbi Streptococcus pneumoniae 705850
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-60
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-140
SPNE171101 ncbi Streptococcus pneumoniae R60
SPNE170187 ncbi Streptococcus pneumoniae G540
SPNE1313 Streptococcus pneumoniae0
SMUT210007 ncbi Streptococcus mutans UA1590
SMAR399550 ncbi Staphylothermus marinus F11
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14351
SGOR29390 Streptococcus gordonii Challis0
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB1
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122280
SEPI176279 ncbi Staphylococcus epidermidis RP62A0
SELO269084 ncbi Synechococcus elongatus PCC 63011
SCO ncbi Streptomyces coelicolor A3(2)1
SAUR93062 ncbi Staphylococcus aureus aureus COL0
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83250
SAUR426430 ncbi Staphylococcus aureus aureus Newman0
SAUR418127 ncbi Staphylococcus aureus aureus Mu30
SAUR367830 Staphylococcus aureus aureus USA3000
SAUR359787 ncbi Staphylococcus aureus aureus JH10
SAUR359786 ncbi Staphylococcus aureus aureus JH90
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4760
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2520
SAUR273036 ncbi Staphylococcus aureus RF1220
SAUR196620 ncbi Staphylococcus aureus aureus MW20
SAUR158879 ncbi Staphylococcus aureus aureus N3150
SAUR158878 ncbi Staphylococcus aureus aureus Mu500
SARE391037 ncbi Salinispora arenicola CNS-2051
SAGA211110 ncbi Streptococcus agalactiae NEM3160
SAGA208435 ncbi Streptococcus agalactiae 2603V/R0
SAGA205921 ncbi Streptococcus agalactiae A9090
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332091
RALB246199 Ruminococcus albus 80
PTOR263820 ncbi Picrophilus torridus DSM 97900
PTHE370438 ncbi Pelotomaculum thermopropionicum SI0
PRUM264731 ncbi Prevotella ruminicola 231
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257450
PMOB403833 ncbi Petrotoga mobilis SJ950
PMAR167542 ncbi Prochlorococcus marinus MIT 95151
PMAR167540 Prochlorococcus marinus pastoris MED4ax1
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 171
PHOR70601 ncbi Pyrococcus horikoshii OT30
PGIN242619 ncbi Porphyromonas gingivalis W831
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PDIS435591 ncbi Parabacteroides distasonis ATCC 85030
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PAER178306 ncbi Pyrobaculum aerophilum IM20
PACN267747 ncbi Propionibacterium acnes KPA1712021
PABY272844 ncbi Pyrococcus abyssi GE50
OIHE221109 ncbi Oceanobacillus iheyensis HTE8310
NSP103690 ncbi Nostoc sp. PCC 71201
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
NFAR247156 ncbi Nocardia farcinica IFM 101521
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-10
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra1
MTUB336982 ncbi Mycobacterium tuberculosis F111
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE264732 ncbi Moorella thermoacetica ATCC 390730
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MTBRV ncbi Mycobacterium tuberculosis H37Rv1
MTBCDC ncbi Mycobacterium tuberculosis CDC15511
MSYN262723 ncbi Mycoplasma synoviae 531
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSP189918 ncbi Mycobacterium sp. KMS0
MSP164757 ncbi Mycobacterium sp. JLS0
MSP164756 ncbi Mycobacterium sp. MCS0
MSME246196 ncbi Mycobacterium smegmatis MC2 1550
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MLEP272631 ncbi Mycobacterium leprae TN1
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK0
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P21
MBOV233413 ncbi Mycobacterium bovis AF2122/971
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MAVI243243 ncbi Mycobacterium avium 1041
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
LXYL281090 ncbi Leifsonia xyli xyli CTCB071
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53340
LSAK314315 ncbi Lactobacillus sakei sakei 23K0
LREU557436 ncbi Lactobacillus reuteri DSM 200160
LPLA220668 ncbi Lactobacillus plantarum WCFS10
LMON265669 ncbi Listeria monocytogenes 4b F23650
LMON169963 ncbi Listeria monocytogenes EGD-e0
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82930
LLAC272623 ncbi Lactococcus lactis lactis Il14030
LLAC272622 ncbi Lactococcus lactis cremoris SK110
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-001
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1301
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566011
LINN272626 ncbi Listeria innocua Clip112620
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LCAS321967 ncbi Lactobacillus casei ATCC 3340
LBRE387344 ncbi Lactobacillus brevis ATCC 3670
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1971
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5501
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)1
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)1
LACI272621 ncbi Lactobacillus acidophilus NCFM0
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSAL478009 ncbi Halobacterium salinarum R10
HPYL85963 ncbi Helicobacter pylori J990
HPYL357544 ncbi Helicobacter pylori HPAG10
HPY ncbi Helicobacter pylori 266950
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMOD498761 ncbi Heliobacterium modesticaldum Ice10
HMAR272569 ncbi Haloarcula marismortui ATCC 430490
HHEP235279 ncbi Helicobacter hepaticus ATCC 514490
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237791
HACI382638 ncbi Helicobacter acinonychis Sheeba0
GVIO251221 ncbi Gloeobacter violaceus PCC 74211
GURA351605 ncbi Geobacter uraniireducens Rf41
GMET269799 ncbi Geobacter metallireducens GS-151
GFOR411154 ncbi Gramella forsetii KT08031
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B10
FMAG334413 ncbi Finegoldia magna ATCC 293280
FJOH376686 ncbi Flavobacterium johnsoniae UW1011
ERUM302409 ncbi Ehrlichia ruminantium Gardel1
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden1
EFAE226185 ncbi Enterococcus faecalis V5830
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas1
ECAN269484 ncbi Ehrlichia canis Jake1
DSP255470 ncbi Dehalococcoides sp. CBDB11
DSP216389 ncbi Dehalococcoides sp. BAV11
DRED349161 ncbi Desulfotomaculum reducens MI-10
DRAD243230 ncbi Deinococcus radiodurans R11
DPSY177439 ncbi Desulfotalea psychrophila LSv541
DOLE96561 ncbi Desulfococcus oleovorans Hxd30
DHAF138119 ncbi Desulfitobacterium hafniense Y510
DGEO319795 ncbi Deinococcus geothermalis DSM 113000
DETH243164 ncbi Dehalococcoides ethenogenes 1951
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis1
CTRA471472 ncbi Chlamydia trachomatis 434/Bu1
CTET212717 ncbi Clostridium tetani E881
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE251
CPHY357809 ncbi Clostridium phytofermentans ISDg1
CNOV386415 ncbi Clostridium novyi NT0
CMUR243161 ncbi Chlamydia muridarum Nigg1
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3821
CMIC31964 ncbi Clavibacter michiganensis sepedonicus1
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CKLU431943 ncbi Clostridium kluyveri DSM 5550
CJEJ407148 ncbi Campylobacter jejuni jejuni 811161
CJEJ360109 ncbi Campylobacter jejuni doylei 269.970
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1760
CJEJ195099 ncbi Campylobacter jejuni RM12211
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111681
CJEI306537 ncbi Corynebacterium jeikeium K4110
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29010
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334060
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3811
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130320
CFET360106 ncbi Campylobacter fetus fetus 82-400
CFEL264202 ncbi Chlamydophila felis Fe/C-561
CEFF196164 ncbi Corynebacterium efficiens YS-3140
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131291
CDIF272563 ncbi Clostridium difficile 6301
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C0
CCUR360105 ncbi Campylobacter curvus 525.921
CCON360104 ncbi Campylobacter concisus 138261
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto0
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6570
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B0
CBOT498213 ncbi Clostridium botulinum B1 str. Okra0
CBOT441772 ncbi Clostridium botulinum F str. Langeland0
CBOT441771 ncbi Clostridium botulinum A str. Hall0
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193970
CBOT36826 Clostridium botulinum A0
CACE272562 ncbi Clostridium acetobutylicum ATCC 8240
BXEN266265 ncbi Burkholderia xenovorans LB4000
BTUR314724 ncbi Borrelia turicatae 91E1350
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54820
BSUB ncbi Bacillus subtilis subtilis 1681
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)1
BQUI283165 ncbi Bartonella quintana Toulouse0
BPUM315750 ncbi Bacillus pumilus SAFR-0321
BLON206672 ncbi Bifidobacterium longum NCC27050
BLIC279010 ncbi Bacillus licheniformis ATCC 145801
BHER314723 ncbi Borrelia hermsii DAH0
BHEN283166 ncbi Bartonella henselae Houston-10
BHAL272558 ncbi Bacillus halodurans C-1250
BGAR290434 ncbi Borrelia garinii PBi0
BFRA295405 ncbi Bacteroides fragilis YCH460
BFRA272559 ncbi Bacteroides fragilis NCTC 93430
BCIC186490 Candidatus Baumannia cicadellinicola1
BBUR224326 ncbi Borrelia burgdorferi B310
BBAC360095 ncbi Bartonella bacilliformis KC5831
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AVAR240292 ncbi Anabaena variabilis ATCC 294131
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
APER272557 ncbi Aeropyrum pernix K10
ANAE240017 Actinomyces oris MG11
AMET293826 ncbi Alkaliphilus metalliredigens QYMF1
AMAR234826 ncbi Anaplasma marginale St. Maries1
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C1
ABUT367737 ncbi Arcobacter butzleri RM40180
AAEO224324 ncbi Aquifex aeolicus VF51


Names of the homologs of the genes in the group in each of these orgs
  G7889   G7888   EG12310   EG10694   
WSUC273121 WS1353
WPIP955 WD_0054
WPIP80849 WB_0962
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496
TWHI203267
TVOL273116
TTEN273068
TSP28240
TSP1755
TROS309801 TRD_0513
TPSE340099
TPET390874
TPEN368408
TPAL243276
TMAR243274
TLET416591
TKOD69014
TERY203124 TERY_0069
TELO197221 TLR1745
TDEN326298 TMDEN_1120
TDEN243275 TDE_0300
TACI273075
SWOL335541
STRO369723 STROP_0710
STOK273063
STHE322159
STHE299768
STHE292459 STH1774
STHE264199
SSUI391296
SSUI391295
SSP387093
SSP321332 CYB_1818
SSP321327 CYA_2527
SSP1148 SLL2001
SSOL273057
SSAP342451
SRUB309807
SPYO370554
SPYO370553
SPYO370552
SPYO370551
SPYO319701
SPYO293653
SPYO286636
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SPNE488221
SPNE487214
SPNE487213
SPNE171101
SPNE170187
SPNE1313
SMUT210007
SMAR399550 SMAR_0166
SHAE279808 SH2009
SGOR29390
SFUM335543 SFUM_2081
SEPI176280
SEPI176279
SELO269084 SYC0360_D
SCO SCO2179
SAUR93062
SAUR93061
SAUR426430
SAUR418127
SAUR367830
SAUR359787
SAUR359786
SAUR282459
SAUR282458
SAUR273036
SAUR196620
SAUR158879
SAUR158878
SARE391037 SARE_0657
SAGA211110
SAGA208435
SAGA205921
SACI330779
RSAL288705 RSAL33209_2430
RALB246199
PTOR263820
PTHE370438
PRUM264731 GFRORF0844
PPEN278197
PMOB403833
PMAR167542 P9515ORF_1561
PMAR167540 PMM1332
PISL384616
PINT246198 PIN_A1596
PHOR70601
PGIN242619 PG_0501
PFUR186497
PDIS435591
PAST100379
PARS340102
PAER178306
PACN267747 PPA0694
PABY272844
OIHE221109
NSP103690 ALR0237
NPHA348780
NFAR247156 NFA16920
MVAN350058
MTUB419947 MRA_2229
MTUB336982 TBFG_12241
MTHE349307
MTHE264732
MTHE187420
MTBRV RV2213
MTBCDC MT2269
MSYN262723 MS53_0153
MSTA339860
MSP189918
MSP164757
MSP164756
MSME246196
MSED399549
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR368407
MMAR267377
MLEP272631 ML0864
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGIL350054
MGEN243273
MFLO265311
MCAP340047
MBUR259564
MBOV410289 BCG_2229
MBOV233413 MB2236
MBAR269797
MAVI243243 MAV_2279
MART243272
MAEO419665
MACE188937
LXYL281090 LXX10160
LWEL386043
LSAK314315
LREU557436
LPLA220668
LMON265669
LMON169963
LMES203120
LLAC272623
LLAC272622
LJOH257314
LINT363253 LI0686
LINT267671 LIC_10733
LINT189518 LA3440
LINN272626
LHEL405566
LGAS324831
LDEL390333
LDEL321956
LCAS321967
LBRE387344
LBOR355277 LBJ_0821
LBOR355276 LBL_2260
LBIF456481 LEPBI_I0450
LBIF355278 LBF_0431
LACI272621
IHOS453591
HWAL362976
HSP64091
HSAL478009
HPYL85963
HPYL357544
HPY
HMUK485914
HMOD498761
HMAR272569
HHEP235279
HAUR316274 HAUR_0628
HACI382638
GVIO251221 GLR2611
GURA351605 GURA_4252
GMET269799 GMET_3361
GFOR411154 GFO_0597
FNOD381764
FMAG334413
FJOH376686 FJOH_0044
ERUM302409 ERGA_CDS_06600
ERUM254945 ERWE_CDS_06690
EFAE226185
ECHA205920 ECH_0369
ECAN269484 ECAJ_0642
DSP255470 CBDBA1001
DSP216389 DEHABAV1_0913
DRED349161
DRAD243230 DR_0717
DPSY177439 DP2604
DOLE96561
DHAF138119
DGEO319795
DETH243164 DET_1030
CTRA471473 CTLON_0296
CTRA471472 CTL0301
CTET212717 CTC_01866
CSUL444179
CPRO264201 PC1103
CPHY357809 CPHY_2184
CNOV386415
CMUR243161 TC_0315
CMIC443906 CMM_1643
CMIC31964 CMS1626
CMET456442
CMAQ397948
CKOR374847
CKLU431943
CJEJ407148 C8J_0866
CJEJ360109
CJEJ354242
CJEJ195099 CJE_1007
CJEJ192222 CJ0929
CJEI306537
CHYD246194
CHUT269798
CHOM360107 CHAB381_1046
CGLU196627
CFET360106
CFEL264202 CF0597
CEFF196164
CDIP257309 DIP1637
CDIF272563 CD1300
CDES477974
CCUR360105 CCV52592_1317
CCON360104 CCC13826_1606
CBOT536232
CBOT515621
CBOT508765
CBOT498213
CBOT441772
CBOT441771
CBOT441770
CBOT36826
CACE272562
BXEN266265
BTUR314724
BTHE226186
BSUB BSU32050
BSP107806 BU367
BQUI283165
BPUM315750 BPUM_2866
BLON206672
BLIC279010 BL05323
BHER314723
BHEN283166
BHAL272558
BGAR290434
BFRA295405
BFRA272559
BCIC186490 BCI_0287
BBUR224326
BBAC360095 BARBAKC583_1264
BAPH372461
BAFZ390236
AYEL322098
AVAR240292 AVA_2727
AURANTIMONAS
APER272557
ANAE240017 ANA_0893
AMET293826 AMET_4616
AMAR234826 AM956
ALAI441768
AFUL224325
ADEH290397 ADEH_4097
ABUT367737
AAEO224324 AQ_2099


Organism features enriched in list (features available for 272 out of the 289 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 8.382e-76492
Arrangment:Clusters 0.00003691617
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 0.00020421111
Disease:Wide_range_of_infections 0.00020421111
Endospores:No 4.517e-28161211
GC_Content_Range4:0-40 9.857e-17147213
GC_Content_Range4:40-60 0.000262985224
GC_Content_Range4:60-100 4.019e-840145
GC_Content_Range7:0-30 0.00001043647
GC_Content_Range7:30-40 3.488e-10111166
GC_Content_Range7:50-60 1.007e-726107
GC_Content_Range7:60-70 1.987e-835134
Genome_Size_Range5:0-2 2.733e-12109155
Genome_Size_Range5:2-4 0.0002591111197
Genome_Size_Range5:4-6 4.435e-1740184
Genome_Size_Range5:6-10 0.00112291247
Genome_Size_Range9:0-1 0.00013522227
Genome_Size_Range9:1-2 2.318e-887128
Genome_Size_Range9:2-3 2.965e-678120
Genome_Size_Range9:4-5 0.00015622996
Genome_Size_Range9:5-6 1.980e-131188
Genome_Size_Range9:6-8 0.00437161038
Gram_Stain:Gram_Neg 2.383e-3286333
Gram_Stain:Gram_Pos 1.631e-20118150
Habitat:Multiple 0.009927672178
Habitat:Specialized 0.00021303753
Motility:No 1.060e-10104151
Motility:Yes 0.0000557102267
Optimal_temp.:- 5.418e-694257
Optimal_temp.:30-37 8.047e-71818
Optimal_temp.:37 0.002278462106
Oxygen_Req:Aerobic 0.000011663185
Oxygen_Req:Anaerobic 2.684e-1279102
Oxygen_Req:Microaerophilic 0.00521981418
Pathogenic_in:Animal 0.00033551866
Pathogenic_in:No 0.0069207118226
Salinity:Non-halophilic 0.006609460106
Shape:Coccus 6.813e-116582
Shape:Irregular_coccus 0.00003691617
Shape:Rod 1.376e-17112347
Shape:Sphere 0.00062981619
Shape:Spiral 2.179e-73034
Temp._range:Hyperthermophilic 4.136e-72223
Temp._range:Mesophilic 0.0039822209473
Temp._range:Thermophilic 0.00943092335



Back to top


ORGANISMS ENRICHED FOR GROUP:




Back to top


ORGANISMS DEPLETED FOR GROUP:




Back to top


PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3002190.7206
GLYCOCAT-PWY (glycogen degradation I)2461960.7157
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181810.7010
PWY-5918 (heme biosynthesis I)2722040.6947
PWY-1269 (CMP-KDO biosynthesis I)3252240.6926
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2912080.6705
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2862060.6702
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2962090.6642
NAGLIPASYN-PWY (lipid IVA biosynthesis)3482240.6399
PWY-5857 (ubiquinone-10 biosynthesis (prokaryotic))1831550.6385
PWY-4041 (γ-glutamyl cycle)2791980.6354
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2902020.6331
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251730.6228
PWY-5913 (TCA cycle variation IV)3012040.6182
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951570.6098
PWY-5855 (ubiquinone-7 biosynthesis (prokaryotic))1911550.6095
TYRFUMCAT-PWY (tyrosine degradation I)1841510.6057
AST-PWY (arginine degradation II (AST pathway))1201140.5879
ECASYN-PWY (enterobacterial common antigen biosynthesis)1911510.5806
GLUTATHIONESYN-PWY (glutathione biosynthesis)3392120.5800
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)1761400.5543
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)1491260.5535
PWY-5856 (ubiquinone-9 biosynthesis (prokaryotic))2551740.5402
PWY-5386 (methylglyoxal degradation I)3051930.5350
DAPLYSINESYN-PWY (lysine biosynthesis I)3422050.5263
REDCITCYC (TCA cycle variation II)1741340.5172
PWY0-845 (superpathway of pyridoxal 5'-phosphate biosynthesis and salvage)3291990.5166
UBISYN-PWY (ubiquinol-8 biosynthesis (prokaryotic))3982200.5060
PWY-5084 (2-ketoglutarate dehydrogenase complex)3261950.4971
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491650.4962
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491650.4962
KDOSYN-PWY (KDO transfer to lipid IVA I)1801340.4957
GLUCONSUPER-PWY (D-gluconate degradation)2291560.4930
KDO-NAGLIPASYN-PWY (superpathway of KDO2-lipid A biosynthesis)1791330.4919
PWY-5028 (histidine degradation II)1301070.4830
PWY-5148 (acyl-CoA hydrolysis)2271530.4782
PWY-5669 (phosphatidylethanolamine biosynthesis I)4162210.4761
CHOLINE-BETAINE-ANA-PWY (choline degradation I)1351070.4615
PWY-5188 (tetrapyrrole biosynthesis I)4392250.4588
BETSYN-PWY (glycine betaine biosynthesis I (Gram-negative bacteria))1381080.4570
LIPASYN-PWY (phospholipases)2121430.4544
POLYISOPRENSYN-PWY (polyisoprenoid biosynthesis (E. coli))116960.4544
P344-PWY (acrylonitrile degradation)2101420.4536
PYRIDOXSYN-PWY (pyridoxal 5'-phosphate biosynthesis I)4222190.4497
PWY0-541 (cyclopropane fatty acid (CFA) biosynthesis)3001780.4476
PWY-5755 (4-hydroxybenzoate biosynthesis II (bacteria and fungi))81750.4460
P601-PWY (D-camphor degradation)95830.4434
PWY-46 (putrescine biosynthesis III)1381060.4410
PWY-3162 (tryptophan degradation V (side chain pathway))94820.4395
PLPSAL-PWY (pyridoxal 5'-phosphate salvage pathway)3742020.4341
PWY0-501 (lipoate biosynthesis and incorporation I)3852050.4303
PWY0-1329 (succinate to cytochrome bo oxidase electron transfer)96820.4289
GDPRHAMSYN-PWY (GDP-D-rhamnose biosynthesis)1561130.4254
GALACTITOLCAT-PWY (galactitol degradation)73680.4245
PWY0-1335 (NADH to cytochrome bo oxidase electron transfer)112900.4214
P184-PWY (protocatechuate degradation I (meta-cleavage pathway))94800.4209
GLUCARDEG-PWY (D-glucarate degradation I)1521100.4173
PWY-5340 (sulfate activation for sulfonation)3852030.4167
GLUT-REDOX-PWY (glutathione redox reactions II)2461520.4163
PHENYLALANINE-DEG1-PWY (phenylalanine degradation I (aerobic))2891690.4156
PWY-5783 (octaprenyl diphosphate biosynthesis)1651160.4152
PWY-6087 (4-chlorocatechol degradation)2231420.4140
SULFATE-CYS-PWY (superpathway of sulfate assimilation and cysteine biosynthesis)3651950.4068
PWY0-981 (taurine degradation IV)106850.4060
SO4ASSIM-PWY (sulfate reduction I (assimilatory))3111750.4004



Back to top


PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G7888   EG12310   EG10694   
G78890.9998670.9985650.999866
G78880.9990390.999878
EG123100.999773
EG10694



Back to top


PAIRWISE BLAST SCORES:

  G7889   G7888   EG12310   EG10694   
G78890.0f0---
G7888-0.0f0--
EG12310--0.0f01.1e-37
EG10694---0.0f0



Back to top


PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- ABC-53-CPLX (LptABCFG ABC transporter) (degree of match pw to cand: 0.400, degree of match cand to pw: 0.500, average score: 0.907)
  Genes in pathway or complex:
             0.8422 0.5206 G7664 (lptC) G7664-MONOMER (LptC)
             0.5635 0.2037 EG11680 (lptB) YHBG-MONOMER (LptB)
             0.7478 0.5872 G7665 (lptA) YHBN-MONOMER (LptA)
   *in cand* 0.9997 0.9990 G7888 (lptF) G7888-MONOMER (LptF)
   *in cand* 0.9996 0.9986 G7889 (lptG) G7889-MONOMER (LptG)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9999 0.9998 EG10694 (pepA) EG10694-MONOMER (aminopeptidase A/I)
   *in cand* 0.9993 0.9986 EG12310 (pepB) EG12310-MONOMER (aminopeptidase B)



Back to top


GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10694 G7888 G7889 (centered at G7888)
EG12310 (centered at EG12310)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7889   G7888   EG12310   EG10694   
247/623181/623301/623400/623
AAEO224324:0:Tyes---0
AAUR290340:2:Tyes--00
AAVE397945:0:Tyes2100
ABAC204669:0:Tyes--00
ABAU360910:0:Tyes18761-0
ABOR393595:0:Tyes21-0
ACAU438753:0:Tyes4097-0257
ACEL351607:0:Tyes--8960
ACRY349163:8:Tyes2216-0783
ADEH290397:0:Tyes---0
AEHR187272:0:Tyes21-0
AFER243159:0:Tyes-1-0
AHYD196024:0:Tyes1864186501866
AMAR234826:0:Tyes---0
AMAR329726:9:Tyes--00
AMET293826:0:Tyes---0
ANAE240017:0:Tyes--0-
AORE350688:0:Tyes--00
APHA212042:0:Tyes--00
APLE416269:0:Tyes7147130711
APLE434271:0:Tno6876860684
ASAL382245:5:Tyes1179117801177
ASP1667:3:Tyes--00
ASP232721:2:Tyes0122
ASP62928:0:Tyes01-2
ASP62977:0:Tyes21-0
ASP76114:2:Tyes0122
AVAR240292:3:Tyes---0
BABO262698:1:Tno--14000
BAMB339670:3:Tno2100
BAMB398577:3:Tno2100
BAMY326423:0:Tyes--00
BANT260799:0:Tno--00
BANT261594:2:Tno--00
BANT568206:2:Tyes--00
BANT592021:2:Tno--00
BAPH198804:0:Tyes--00
BBAC264462:0:Tyes2690741188
BBAC360095:0:Tyes--0-
BBRO257310:0:Tyes679011
BCAN483179:1:Tno--14740
BCEN331271:2:Tno2100
BCEN331272:3:Tyes2100
BCER226900:1:Tyes--00
BCER288681:0:Tno--00
BCER315749:1:Tyes--00
BCER405917:1:Tyes--00
BCER572264:1:Tno--00
BCIC186490:0:Tyes---0
BCLA66692:0:Tyes--00
BJAP224911:0:Fyes2681-02683
BLIC279010:0:Tyes---0
BMAL243160:1:Tno0122
BMAL320388:1:Tno2100
BMAL320389:1:Tyes2100
BMEL224914:1:Tno--6930
BMEL359391:1:Tno--13500
BOVI236:1:Tyes--12660
BPAR257311:0:Tno640011
BPER257313:0:Tyes0187918801880
BPET94624:0:Tyes01221-1220
BPSE272560:1:Tyes0122
BPSE320372:1:Tno0122
BPSE320373:1:Tno0122
BPUM315750:0:Tyes---0
BSP107806:2:Tyes---0
BSP36773:2:Tyes2100
BSP376:0:Tyes2202-02204
BSUB:0:Tyes---0
BSUI204722:1:Tyes--14470
BSUI470137:1:Tno--12670
BTHA271848:1:Tno0122
BTHU281309:1:Tno--00
BTHU412694:1:Tno--00
BTRI382640:1:Tyes532-0-
BVIE269482:7:Tyes2100
BWEI315730:4:Tyes--00
CABO218497:0:Tyes--00
CAULO:0:Tyes7277280729
CBEI290402:0:Tyes--00
CBLO203907:0:Tyes21-0
CBLO291272:0:Tno2100
CBUR227377:1:Tyes2292280-
CBUR360115:1:Tno4214220-
CBUR434922:2:Tno10591-
CCAV227941:1:Tyes--00
CCHL340177:0:Tyes0-521521
CCON360104:2:Tyes---0
CCUR360105:0:Tyes---0
CDIF272563:1:Tyes---0
CDIP257309:0:Tyes--0-
CFEL264202:1:Tyes---0
CHOM360107:1:Tyes---0
CJAP155077:0:Tyes2100
CJEJ192222:0:Tyes---0
CJEJ195099:0:Tno---0
CJEJ407148:0:Tno---0
CMIC31964:2:Tyes--0-
CMIC443906:2:Tyes--0-
CMUR243161:1:Tyes---0
CPEL335992:0:Tyes--00
CPER195102:1:Tyes--00
CPER195103:0:Tno--00
CPER289380:3:Tyes--00
CPHY357809:0:Tyes---0
CPNE115711:1:Tyes--00
CPNE115713:0:Tno--00
CPNE138677:0:Tno--00
CPNE182082:0:Tno--00
CPRO264201:0:Fyes---0
CPSY167879:0:Tyes3141060
CRUT413404:0:Tyes651--0
CSAL290398:0:Tyes01-2
CSP501479:7:Fyes--0-
CSP501479:8:Fyes0---
CSP78:2:Tyes0122
CTEP194439:0:Tyes364-00
CTET212717:0:Tyes---0
CTRA471472:0:Tyes---0
CTRA471473:0:Tno---0
CVES412965:0:Tyes588--0
CVIO243365:0:Tyes21-0
DARO159087:0:Tyes01-2
DDES207559:0:Tyes--00
DETH243164:0:Tyes---0
DNOD246195:0:Tyes2--0
DPSY177439:2:Tyes---0
DRAD243230:3:Tyes--0-
DSHI398580:5:Tyes0-20672
DSP216389:0:Tyes---0
DSP255470:0:Tno---0
DVUL882:1:Tyes--00
ECAN269484:0:Tyes---0
ECAR218491:0:Tyes2128410
ECHA205920:0:Tyes---0
ECOL199310:0:Tno2281228002278
ECOL316407:0:Tno1715171401713
ECOL331111:6:Tno1944194301942
ECOL362663:0:Tno1970196901968
ECOL364106:1:Tno2005200402002
ECOL405955:2:Tyes1896189501894
ECOL409438:6:Tyes1815181401813
ECOL413997:0:Tno1749174801747
ECOL439855:4:Tno1977197601974
ECOL469008:0:Tno2585258602587
ECOL481805:0:Tno2595259602597
ECOL585034:0:Tno1858185701856
ECOL585035:0:Tno2064206302062
ECOL585055:0:Tno1965196401963
ECOL585056:2:Tno1933193201931
ECOL585057:0:Tno2028202702026
ECOL585397:0:Tno2100209902098
ECOL83334:0:Tno1914191301912
ECOLI:0:Tno1757175601755
ECOO157:0:Tno1886188501884
EFER585054:1:Tyes3654365303652
ELIT314225:0:Tyes1730-01463
ERUM254945:0:Tyes---0
ERUM302409:0:Tno---0
ESP42895:1:Tyes6336340635
FALN326424:0:Tyes--9070
FJOH376686:0:Tyes0---
FNUC190304:0:Tyes1253-00
FPHI484022:1:Tyes2-15660
FRANT:0:Tno211-0209
FSP106370:0:Tyes--00
FSP1855:0:Tyes--0895
FSUC59374:0:Tyes-23740-
FTUL351581:0:Tno334-0332
FTUL393011:0:Tno290-0288
FTUL393115:0:Tyes203-0201
FTUL401614:0:Tyes0-1222
FTUL418136:0:Tno60-058
FTUL458234:0:Tno301-0299
GBET391165:0:Tyes0-19521952
GFOR411154:0:Tyes0---
GKAU235909:1:Tyes--00
GMET269799:1:Tyes---0
GOXY290633:5:Tyes6-16140
GSUL243231:0:Tyes1581--0
GTHE420246:1:Tyes--00
GURA351605:0:Tyes---0
GVIO251221:0:Tyes---0
HARS204773:0:Tyes01-2
HAUR316274:2:Tyes---0
HBUT415426:0:Tyes--00
HCHE349521:0:Tyes32-0
HDUC233412:0:Tyes015533
HHAL349124:0:Tyes0122
HINF281310:0:Tyes8538540855
HINF374930:0:Tyes217250
HINF71421:0:Tno0122
HNEP81032:0:Tyes06731390672
HSOM205914:1:Tyes1311300129
HSOM228400:0:Tno1050105101052
ILOI283942:0:Tyes013042
JSP290400:1:Tyes1720-01722
JSP375286:0:Tyes01-2
KPNE272620:2:Tyes1786178501783
KRAD266940:2:Fyes--00
LBIF355278:2:Tyes---0
LBIF456481:2:Tno---0
LBOR355276:1:Tyes---0
LBOR355277:1:Tno---0
LCHO395495:0:Tyes2100
LINT189518:1:Tyes---0
LINT267671:1:Tno---0
LINT363253:3:Tyes---0
LPNE272624:0:Tno0152
LPNE297245:1:Fno0152
LPNE297246:1:Fyes0152
LPNE400673:0:Tno5403
LSPH444177:1:Tyes--00
LXYL281090:0:Tyes--0-
MABS561007:1:Tyes--00
MAER449447:0:Tyes--00
MAQU351348:2:Tyes2100
MAVI243243:0:Tyes---0
MBOV233413:0:Tno---0
MBOV410289:0:Tno---0
MCAP243233:0:Tyes21-0
MEXT419610:0:Tyes666-0668
MFLA265072:0:Tyes0122
MLEP272631:0:Tyes---0
MLOT266835:2:Tyes--01867
MMAG342108:0:Tyes--4310
MMAR394221:0:Tyes--0799
MPET420662:1:Tyes2100
MSP266779:3:Tyes--22010
MSP400668:0:Tyes21-0
MSP409:2:Tyes--12510
MSUC221988:0:Tyes9099100911
MSYN262723:0:Tyes---0
MTBCDC:0:Tno---0
MTBRV:0:Tno---0
MTUB336982:0:Tno---0
MTUB419947:0:Tyes---0
MXAN246197:0:Tyes--00
NARO279238:0:Tyes0-622399
NEUR228410:0:Tyes363-00
NEUT335283:2:Tyes493-00
NFAR247156:2:Tyes---0
NGON242231:0:Tyes2100
NHAM323097:2:Tyes--01887
NMEN122586:0:Tno10--
NMEN122587:0:Tyes2100
NMEN272831:0:Tno2100
NMEN374833:0:Tno2100
NMUL323848:3:Tyes0-342342
NOCE323261:1:Tyes15781579-0
NSEN222891:0:Tyes--00
NSP103690:6:Tyes---0
NSP35761:1:Tyes--01106
NSP387092:0:Tyes0--331
NWIN323098:0:Tyes1400-01398
OANT439375:5:Tyes--01916
OCAR504832:0:Tyes2-10710
OTSU357244:0:Fyes--00
PACN267747:0:Tyes--0-
PAER208963:0:Tyes43-0
PAER208964:0:Tno0144
PARC259536:0:Tyes32-0
PATL342610:0:Tyes013772
PCAR338963:0:Tyes1746-00
PCRY335284:1:Tyes32-0
PENT384676:0:Tyes0122
PFLU205922:0:Tyes2100
PFLU216595:1:Tyes2100
PFLU220664:0:Tyes2100
PGIN242619:0:Tyes0---
PHAL326442:1:Tyes1850185101852
PING357804:0:Tyes219040
PINT246198:1:Tyes0---
PLUM243265:0:Fyes1211121201213
PLUT319225:0:Tyes0-539539
PMAR146891:0:Tyes--00
PMAR167539:0:Tyes--00
PMAR167540:0:Tyes---0
PMAR167542:0:Tyes---0
PMAR167546:0:Tyes--00
PMAR167555:0:Tyes--00
PMAR59920:0:Tno--00
PMAR74546:0:Tyes--00
PMAR74547:0:Tyes--00
PMAR93060:0:Tyes--00
PMEN399739:0:Tyes0122
PMUL272843:1:Tyes218340
PNAP365044:8:Tyes21-0
PPRO298386:2:Tyes212730
PPUT160488:0:Tno3200
PPUT351746:0:Tyes2100
PPUT76869:0:Tno2100
PRUM264731:0:Tyes0---
PSP117:0:Tyes--00
PSP296591:2:Tyes01-2
PSP312153:0:Tyes01-2
PSP56811:2:Tyes21-0
PSTU379731:0:Tyes01-2
PSYR205918:0:Tyes21-0
PSYR223283:2:Tyes2100
RAKA293614:0:Fyes924-00
RBEL336407:0:Tyes--00
RBEL391896:0:Fno--00
RCAN293613:0:Fyes835-00
RCAS383372:0:Tyes--00
RCON272944:0:Tno1042-00
RDEN375451:4:Tyes2-00
RETL347834:5:Tyes1230-01233
REUT264198:3:Tyes2100
REUT381666:2:Tyes2100
RFEL315456:2:Tyes91-00
RFER338969:1:Tyes01-2
RLEG216596:6:Tyes0-33
RMAS416276:1:Tyes--00
RMET266264:2:Tyes21-0
RPAL258594:0:Tyes2-6350
RPAL316055:0:Tyes2-4630
RPAL316056:0:Tyes--14130
RPAL316057:0:Tyes2-5700
RPAL316058:0:Tyes710-0712
RPOM246200:1:Tyes1-12420
RPRO272947:0:Tyes613--0
RRIC392021:0:Fno998-00
RRIC452659:0:Tyes1026-00
RRUB269796:1:Tyes2927-0316
RSAL288705:0:Tyes--0-
RSOL267608:1:Tyes21-0
RSP101510:3:Fyes--00
RSP357808:0:Tyes--00
RSPH272943:4:Tyes2-15220
RSPH349101:2:Tno1512-01510
RSPH349102:5:Tyes1071-01073
RTYP257363:0:Tno623--0
RXYL266117:0:Tyes--00
SACI56780:0:Tyes0--209
SALA317655:1:Tyes1486-01065
SARE391037:0:Tyes--0-
SAVE227882:1:Fyes--00
SBAL399599:3:Tyes2432243302434
SBAL402882:1:Tno2316231702318
SBOY300268:1:Tyes1548154901550
SCO:2:Fyes---0
SDEG203122:0:Tyes2100
SDEN318161:0:Tyes2123570
SDYS300267:1:Tyes1450144901448
SELO269084:0:Tyes---0
SENT209261:0:Tno4004400304002
SENT220341:0:Tno1889188801887
SENT295319:0:Tno3791379003789
SENT321314:2:Tno1842184101839
SENT454169:2:Tno1993199201991
SERY405948:0:Tyes--00
SFLE198214:0:Tyes1636163701638
SFLE373384:0:Tno1580158101582
SFUM335543:0:Tyes---0
SGLO343509:3:Tyes3453460347
SHAE279808:0:Tyes---0
SHAL458817:0:Tyes2082070206
SHIGELLA:0:Tno1598159901600
SLAC55218:1:Fyes1452-01453
SLOI323850:0:Tyes2122650
SMAR399550:0:Tyes---0
SMED366394:3:Tyes--00
SMEL266834:2:Tyes0-22
SONE211586:1:Tyes4864850484
SPEA398579:0:Tno2122110210
SPRO399741:1:Tyes2131020
SSED425104:0:Tyes2129880
SSON300269:1:Tyes1733173201731
SSP1131:0:Tyes--00
SSP1148:0:Tyes---0
SSP292414:1:Tyes--0-
SSP292414:2:Tyes0--2
SSP321327:0:Tyes---0
SSP321332:0:Tyes---0
SSP644076:4:Fyes--0-
SSP644076:5:Fyes0--2
SSP64471:0:Tyes--00
SSP84588:0:Tyes--00
SSP94122:1:Tyes014032
STHE292459:0:Tyes---0
STRO369723:0:Tyes--0-
STYP99287:1:Tyes1928192701925
TCRU317025:0:Tyes01-2
TDEN243275:0:Tyes---0
TDEN292415:0:Tyes21-0
TDEN326298:0:Tyes---0
TELO197221:0:Tyes---0
TERY203124:0:Tyes---0
TFUS269800:0:Tyes--0499
TROS309801:1:Tyes---0
TTHE262724:1:Tyes--00
TTHE300852:2:Tyes--00
TTUR377629:0:Tyes0122
VCHO:0:Tyes1760176101762
VCHO345073:1:Tno1757175801759
VEIS391735:1:Tyes21-0
VFIS312309:2:Tyes212330
VPAR223926:1:Tyes2109211002111
VVUL196600:2:Tyes2208220902210
VVUL216895:1:Tno1006100501004
WPIP80849:0:Tyes---0
WPIP955:0:Tyes---0
WSUC273121:0:Tyes---0
XAUT78245:1:Tyes--01183
XAXO190486:0:Tyes014332
XCAM190485:0:Tyes2132550
XCAM314565:0:Tno014102
XCAM316273:0:Tno4234220421
XCAM487884:0:Tno013982
XFAS160492:2:Tno21-0
XFAS183190:1:Tyes21-0
XFAS405440:0:Tno21-0
XORY291331:0:Tno3913900389
XORY342109:0:Tyes3533520351
XORY360094:0:Tno027014
YENT393305:1:Tyes215520
YPES187410:5:Tno216000
YPES214092:3:Tno5235240525
YPES349746:2:Tno3520351903518
YPES360102:3:Tyes6196200621
YPES377628:2:Tno216150
YPES386656:2:Tno1023102401025
YPSE273123:2:Tno2123440
YPSE349747:2:Tno2343234402345
ZMOB264203:0:Tyes607-0519



Back to top