CANDIDATE ID: 943

NUMBER OF GENES: 4
AVERAGE SCORE:    9.9959400e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    5.0000000e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages

GENE LIST:

- EG12381 (nrdF) (b2676)
   Products of gene:
     - NRDF-MONOMER (NrdF)
     - NRDF-CPLX (ribonucleoside-diphosphate reductase 2, β subunit dimer)
     - RIBONUCLEOSIDE-DIP-REDUCTII-CPLX (ribonucleoside-diphosphate reductase 2)
       Reactions:
        CDP + an oxidized NrdH glutaredoxin-like protein  ->  dCDP + a reduced NrdH glutaredoxin-like protein + H2O
         In pathways
         PWY0-166 (pyrimidine deoxyribonucleotides de novo biosynthesis I)
         PWY-6545 (PWY-6545)
        GDP + a reduced NrdH glutaredoxin-like protein  ->  2'-deoxyguanosine-5'-diphosphate + an oxidized NrdH glutaredoxin-like protein + H2O
         In pathways
         PRPP-PWY (superpathway of histidine, purine, and pyrimidine biosynthesis)
         DENOVOPURINE2-PWY (purine nucleotides de novo biosynthesis I)
         PWY-6125 (guanosine nucleotides de novo biosynthesis)
        ADP + a reduced NrdH glutaredoxin-like protein  ->  2'-deoxyadenosine-5'-diphosphate + an oxidized NrdH glutaredoxin-like protein + H2O
         In pathways
         PRPP-PWY (superpathway of histidine, purine, and pyrimidine biosynthesis)
         DENOVOPURINE2-PWY (purine nucleotides de novo biosynthesis I)
         PWY-6126 (adenosine nucleotides de novo biosynthesis)
        UDP + a reduced NrdH glutaredoxin-like protein  ->  dUDP + an oxidized NrdH glutaredoxin-like protein + H2O
         In pathways
         PWY0-166 (pyrimidine deoxyribonucleotides de novo biosynthesis I)
         PWY-6545 (PWY-6545)
        a reduced electron acceptor + a ribonucleoside diphosphate  ->  an oxidized electron acceptor + a 2'-deoxyribonucleoside diphosphate + H2O

- EG12360 (yfaE) (b2236)
   Products of gene:
     - EG12360-MONOMER (2Fe-2S cluster-containing protein involved in diferric-tyrosyl radical cofactor maintenance)

- EG10661 (nrdB) (b2235)
   Products of gene:
     - NRDB-MONOMER (NrdB)
     - B2-CPLX (B2 protein)
     - RIBONUCLEOSIDE-DIP-REDUCTI-CPLX (ribonucleoside-diphosphate reductase [multifunctional])
       Reactions:
        a reduced electron acceptor + a ribonucleoside diphosphate  ->  an oxidized electron acceptor + a 2'-deoxyribonucleoside diphosphate + H2O
        CDP + a reduced thioredoxin  ->  dCDP + an oxidized thioredoxin + H2O
         In pathways
         PWY0-166 (pyrimidine deoxyribonucleotides de novo biosynthesis I)
         PWY-6545 (PWY-6545)
        UDP + a reduced thioredoxin  ->  dUDP + an oxidized thioredoxin + H2O
         In pathways
         PWY0-166 (pyrimidine deoxyribonucleotides de novo biosynthesis I)
         PWY-6545 (PWY-6545)
        ADP + a reduced thioredoxin  ->  2'-deoxyadenosine-5'-diphosphate + an oxidized thioredoxin + H2O
         In pathways
         PRPP-PWY (superpathway of histidine, purine, and pyrimidine biosynthesis)
         DENOVOPURINE2-PWY (purine nucleotides de novo biosynthesis I)
         PWY-6126 (adenosine nucleotides de novo biosynthesis)
        GDP + a reduced thioredoxin  ->  2'-deoxyguanosine-5'-diphosphate + an oxidized thioredoxin + H2O
         In pathways
         PRPP-PWY (superpathway of histidine, purine, and pyrimidine biosynthesis)
         DENOVOPURINE2-PWY (purine nucleotides de novo biosynthesis I)
         PWY-6125 (guanosine nucleotides de novo biosynthesis)

- EG10660 (nrdA) (b2234)
   Products of gene:
     - NRDA-MONOMER (NrdA)
     - B1-CPLX (B1 protein)
     - RIBONUCLEOSIDE-DIP-REDUCTI-CPLX (ribonucleoside-diphosphate reductase [multifunctional])
       Reactions:
        a reduced electron acceptor + a ribonucleoside diphosphate  ->  an oxidized electron acceptor + a 2'-deoxyribonucleoside diphosphate + H2O
        CDP + a reduced thioredoxin  ->  dCDP + an oxidized thioredoxin + H2O
         In pathways
         PWY0-166 (pyrimidine deoxyribonucleotides de novo biosynthesis I)
         PWY-6545 (PWY-6545)
        UDP + a reduced thioredoxin  ->  dUDP + an oxidized thioredoxin + H2O
         In pathways
         PWY0-166 (pyrimidine deoxyribonucleotides de novo biosynthesis I)
         PWY-6545 (PWY-6545)
        ADP + a reduced thioredoxin  ->  2'-deoxyadenosine-5'-diphosphate + an oxidized thioredoxin + H2O
         In pathways
         PRPP-PWY (superpathway of histidine, purine, and pyrimidine biosynthesis)
         DENOVOPURINE2-PWY (purine nucleotides de novo biosynthesis I)
         PWY-6126 (adenosine nucleotides de novo biosynthesis)
        GDP + a reduced thioredoxin  ->  2'-deoxyguanosine-5'-diphosphate + an oxidized thioredoxin + H2O
         In pathways
         PRPP-PWY (superpathway of histidine, purine, and pyrimidine biosynthesis)
         DENOVOPURINE2-PWY (purine nucleotides de novo biosynthesis I)
         PWY-6125 (guanosine nucleotides de novo biosynthesis)

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ORGANISMS CONTAINING AT LEAST 3 GENES FROM THE GROUP:

Total number of orgs: 236
Effective number of orgs (counting one per cluster within 468 clusters): 156

Organism list
Homologs in each organism in the list
Features enriched in organism list

Follow (ncbi) link, when present, to find the set of organism features for each organism

Org ID	Org Name	# genes in group found in org
YPSE349747 ncbi	Yersinia pseudotuberculosis IP 31758	4
YPSE273123 ncbi	Yersinia pseudotuberculosis IP 32953	4
YPES386656 ncbi	Yersinia pestis Pestoides F	4
YPES377628 ncbi	Yersinia pestis Nepal516	4
YPES360102 ncbi	Yersinia pestis Antiqua	4
YPES349746 ncbi	Yersinia pestis Angola	4
YPES214092 ncbi	Yersinia pestis CO92	4
YPES187410 ncbi	Yersinia pestis KIM 10	4
YENT393305 ncbi	Yersinia enterocolitica enterocolitica 8081	4
XORY360094 ncbi	Xanthomonas oryzae pv. oryzae PXO99A	3
XORY342109 ncbi	Xanthomonas oryzae pv. oryzae MAFF 311018	3
XORY291331 ncbi	Xanthomonas oryzae pv. oryzae KACC10331	3
XFAS405440 ncbi	Xylella fastidiosa M12	3
XFAS183190 ncbi	Xylella fastidiosa Temecula1	3
XFAS160492 ncbi	Xylella fastidiosa 9a5c	3
XAXO190486 ncbi	Xanthomonas axonopodis pv. citri str. 306	3
VVUL216895 ncbi	Vibrio vulnificus CMCP6	4
VVUL196600 ncbi	Vibrio vulnificus YJ016	4
VPAR223926 ncbi	Vibrio parahaemolyticus RIMD 2210633	4
VFIS312309 ncbi	Vibrio fischeri ES114	3
VEIS391735 ncbi	Verminephrobacter eiseniae EF01-2	4
VCHO345073 ncbi	Vibrio cholerae O395	4
VCHO ncbi	Vibrio cholerae O1 biovar El Tor str. N16961	4
TWHI218496 ncbi	Tropheryma whipplei TW08/27	3
TWHI203267 ncbi	Tropheryma whipplei Twist	3
TDEN326298 ncbi	Sulfurimonas denitrificans DSM 1251	3
TDEN243275 ncbi	Treponema denticola ATCC 35405	3
TCRU317025 ncbi	Thiomicrospira crunogena XCL-2	3
STYP99287 ncbi	Salmonella enterica enterica serovar Typhimurium str. LT2	4
STHE292459 ncbi	Symbiobacterium thermophilum IAM 14863	3
SSP94122 ncbi	Shewanella sp. ANA-3	4
SSP387093 ncbi	Sulfurovum sp. NBC37-1	3
SSP292414 ncbi	Ruegeria sp. TM1040	3
SSP1148 ncbi	Synechocystis sp. PCC 6803	3
SSON300269 ncbi	Shigella sonnei Ss046	4
SSED425104 ncbi	Shewanella sediminis HAW-EB3	4
SSAP342451 ncbi	Staphylococcus saprophyticus saprophyticus ATCC 15305	3
SPRO399741 ncbi	Serratia proteamaculans 568	4
SPEA398579 ncbi	Shewanella pealeana ATCC 700345	4
SONE211586 ncbi	Shewanella oneidensis MR-1	4
SLOI323850 ncbi	Shewanella loihica PV-4	3
SHIGELLA ncbi	Shigella flexneri 2a str. 2457T	4
SHAL458817 ncbi	Shewanella halifaxensis HAW-EB4	3
SHAE279808 ncbi	Staphylococcus haemolyticus JCSC1435	3
SGLO343509 ncbi	Sodalis glossinidius morsitans	3
SFLE373384 ncbi	Shigella flexneri 5 str. 8401	4
SFLE198214 ncbi	Shigella flexneri 2a str. 301	4
SEPI176280 ncbi	Staphylococcus epidermidis ATCC 12228	3
SEPI176279 ncbi	Staphylococcus epidermidis RP62A	3
SENT454169 ncbi	Salmonella enterica enterica serovar Heidelberg str. SL476	4
SENT321314 ncbi	Salmonella enterica enterica serovar Choleraesuis str. SC-B67	4
SENT295319 ncbi	Salmonella enterica enterica serovar Paratyphi A str. ATCC 9150	4
SENT220341 ncbi	Salmonella enterica enterica serovar Typhi str. CT18	4
SENT209261 ncbi	Salmonella enterica enterica serovar Typhi str. Ty2	4
SDYS300267 ncbi	Shigella dysenteriae Sd197	4
SDEN318161 ncbi	Shewanella denitrificans OS217	3
SBOY300268 ncbi	Shigella boydii Sb227	4
SBAL402882 ncbi	Shewanella baltica OS185	4
SBAL399599 ncbi	Shewanella baltica OS195	4
RSP101510 ncbi	Rhodococcus jostii RHA1	4
RSAL288705 ncbi	Renibacterium salmoninarum ATCC 33209	3
RLEG216596 ncbi	Rhizobium leguminosarum bv. viciae 3841	4
RFER338969 ncbi	Rhodoferax ferrireducens T118	4
REUT264198 ncbi	Ralstonia eutropha JMP134	3
RETL347834 ncbi	Rhizobium etli CFN 42	3
PSTU379731 ncbi	Pseudomonas stutzeri A1501	3
PSP56811	Psychrobacter sp.	3
PSP296591 ncbi	Polaromonas sp. JS666	3
PPUT76869 ncbi	Pseudomonas putida GB-1	3
PPUT351746 ncbi	Pseudomonas putida F1	3
PPUT160488 ncbi	Pseudomonas putida KT2440	3
PPRO298386 ncbi	Photobacterium profundum SS9	4
PPEN278197 ncbi	Pediococcus pentosaceus ATCC 25745	3
PNAP365044 ncbi	Polaromonas naphthalenivorans CJ2	3
PMUL272843 ncbi	Pasteurella multocida multocida Pm70	3
PMEN399739 ncbi	Pseudomonas mendocina ymp	3
PLUM243265 ncbi	Photorhabdus luminescens laumondii TTO1	4
PING357804 ncbi	Psychromonas ingrahamii 37	3
PHAL326442 ncbi	Pseudoalteromonas haloplanktis TAC125	4
PFLU220664 ncbi	Pseudomonas fluorescens Pf-5	3
PFLU205922 ncbi	Pseudomonas fluorescens Pf0-1	3
PENT384676 ncbi	Pseudomonas entomophila L48	3
PCRY335284 ncbi	Psychrobacter cryohalolentis K5	4
PATL342610 ncbi	Pseudoalteromonas atlantica T6c	4
PARC259536 ncbi	Psychrobacter arcticus 273-4	4
PACN267747 ncbi	Propionibacterium acnes KPA171202	3
NSP387092 ncbi	Nitratiruptor sp. SB155-2	3
NMEN374833 ncbi	Neisseria meningitidis 053442	4
NMEN272831 ncbi	Neisseria meningitidis FAM18	4
NMEN122587 ncbi	Neisseria meningitidis Z2491	4
NMEN122586 ncbi	Neisseria meningitidis MC58	4
NGON242231 ncbi	Neisseria gonorrhoeae FA 1090	4
NFAR247156 ncbi	Nocardia farcinica IFM 10152	4
MVAN350058 ncbi	Mycobacterium vanbaalenii PYR-1	4
MTUB419947 ncbi	Mycobacterium tuberculosis H37Ra	3
MTUB336982 ncbi	Mycobacterium tuberculosis F11	3
MTBRV ncbi	Mycobacterium tuberculosis H37Rv	3
MTBCDC ncbi	Mycobacterium tuberculosis CDC1551	3
MSUC221988 ncbi	Mannheimia succiniciproducens MBEL55E	4
MSP400668 ncbi	Marinomonas sp. MWYL1	4
MSP189918 ncbi	Mycobacterium sp. KMS	4
MSP164757 ncbi	Mycobacterium sp. JLS	4
MSP164756 ncbi	Mycobacterium sp. MCS	4
MSME246196 ncbi	Mycobacterium smegmatis MC2 155	3
MPNE272634 ncbi	Mycoplasma pneumoniae M129	3
MPET420662 ncbi	Methylibium petroleiphilum PM1	3
MLEP272631 ncbi	Mycobacterium leprae TN	3
MGIL350054 ncbi	Mycobacterium gilvum PYR-GCK	4
MGEN243273 ncbi	Mycoplasma genitalium G37	3
MFLA265072 ncbi	Methylobacillus flagellatus KT	4
MBOV410289 ncbi	Mycobacterium bovis BCG str. Pasteur 1173P2	3
MBOV233413 ncbi	Mycobacterium bovis AF2122/97	3
MAVI243243 ncbi	Mycobacterium avium 104	3
MAER449447 ncbi	Microcystis aeruginosa NIES-843	3
MABS561007 ncbi	Mycobacterium abscessus ATCC 19977	3
LXYL281090 ncbi	Leifsonia xyli xyli CTCB07	3
LSPH444177 ncbi	Lysinibacillus sphaericus C3-41	3
LCHO395495 ncbi	Leptothrix cholodnii SP-6	4
KRAD266940 ncbi	Kineococcus radiotolerans SRS30216	3
KPNE272620 ncbi	Klebsiella pneumoniae pneumoniae MGH 78578	4
ILOI283942 ncbi	Idiomarina loihiensis L2TR	4
HSOM228400 ncbi	Haemophilus somnus 2336	3
HSOM205914 ncbi	Haemophilus somnus 129PT	3
HPYL85963 ncbi	Helicobacter pylori J99	3
HPYL357544 ncbi	Helicobacter pylori HPAG1	3
HPY ncbi	Helicobacter pylori 26695	3
HINF71421 ncbi	Haemophilus influenzae Rd KW20	3
HINF374930 ncbi	Haemophilus influenzae PittEE	3
HINF281310 ncbi	Haemophilus influenzae 86-028NP	3
HHEP235279 ncbi	Helicobacter hepaticus ATCC 51449	3
HARS204773 ncbi	Herminiimonas arsenicoxydans	3
HACI382638 ncbi	Helicobacter acinonychis Sheeba	3
GTHE420246 ncbi	Geobacillus thermodenitrificans NG80-2	3
GKAU235909 ncbi	Geobacillus kaustophilus HTA426	3
FNUC190304 ncbi	Fusobacterium nucleatum nucleatum ATCC 25586	3
FMAG334413 ncbi	Finegoldia magna ATCC 29328	3
ESP42895	Enterobacter sp.	4
EFER585054 ncbi	Escherichia fergusonii ATCC 35469	4
ECOO157 ncbi	Escherichia coli O157:H7 EDL933	4
ECOL83334	Escherichia coli O157:H7	4
ECOL585397 ncbi	Escherichia coli ED1a	4
ECOL585057 ncbi	Escherichia coli IAI39	4
ECOL585056 ncbi	Escherichia coli UMN026	4
ECOL585055 ncbi	Escherichia coli 55989	4
ECOL585035 ncbi	Escherichia coli S88	4
ECOL585034 ncbi	Escherichia coli IAI1	4
ECOL481805 ncbi	Escherichia coli ATCC 8739	4
ECOL469008 ncbi	Escherichia coli BL21(DE3)	4
ECOL439855 ncbi	Escherichia coli SMS-3-5	4
ECOL413997 ncbi	Escherichia coli B str. REL606	4
ECOL409438 ncbi	Escherichia coli SE11	4
ECOL405955 ncbi	Escherichia coli APEC O1	4
ECOL364106 ncbi	Escherichia coli UTI89	4
ECOL362663 ncbi	Escherichia coli 536	4
ECOL331111 ncbi	Escherichia coli E24377A	4
ECOL316407 ncbi	Escherichia coli K-12 substr. W3110	4
ECOL199310 ncbi	Escherichia coli CFT073	4
ECAR218491 ncbi	Pectobacterium atrosepticum SCRI1043	4
CVIO243365 ncbi	Chromobacterium violaceum ATCC 12472	3
CVES412965 ncbi	Candidatus Vesicomyosocius okutanii HA	3
CSP501479	Citreicella sp. SE45	4
CRUT413404 ncbi	Candidatus Ruthia magnifica Cm (Calyptogena magnifica)	3
CPSY167879 ncbi	Colwellia psychrerythraea 34H	4
CPHY357809 ncbi	Clostridium phytofermentans ISDg	3
CPER289380 ncbi	Clostridium perfringens SM101	3
CPER195103 ncbi	Clostridium perfringens ATCC 13124	3
CPER195102 ncbi	Clostridium perfringens 13	3
CNOV386415 ncbi	Clostridium novyi NT	3
CMIC443906 ncbi	Clavibacter michiganensis michiganensis NCPPB 382	3
CMIC31964 ncbi	Clavibacter michiganensis sepedonicus	3
CJEJ407148 ncbi	Campylobacter jejuni jejuni 81116	3
CJEJ360109 ncbi	Campylobacter jejuni doylei 269.97	3
CJEJ354242 ncbi	Campylobacter jejuni jejuni 81-176	3
CJEJ195099 ncbi	Campylobacter jejuni RM1221	3
CJEJ192222 ncbi	Campylobacter jejuni jejuni NCTC 11168	3
CJEI306537 ncbi	Corynebacterium jeikeium K411	3
CHOM360107 ncbi	Campylobacter hominis ATCC BAA-381	3
CGLU196627 ncbi	Corynebacterium glutamicum ATCC 13032	3
CFET360106 ncbi	Campylobacter fetus fetus 82-40	3
CFEL264202 ncbi	Chlamydophila felis Fe/C-56	3
CEFF196164 ncbi	Corynebacterium efficiens YS-314	3
CDIP257309 ncbi	Corynebacterium diphtheriae NCTC 13129	3
CCUR360105 ncbi	Campylobacter curvus 525.92	3
CCON360104 ncbi	Campylobacter concisus 13826	3
CBOT536232 ncbi	Clostridium botulinum A2 str. Kyoto	3
CBOT515621 ncbi	Clostridium botulinum Ba4 str. 657	3
CBOT508765 ncbi	Clostridium botulinum B str. Eklund 17B	3
CBOT498213 ncbi	Clostridium botulinum B1 str. Okra	3
CBOT441772 ncbi	Clostridium botulinum F str. Langeland	3
CBOT441770 ncbi	Clostridium botulinum A str. ATCC 19397	3
CBOT36826	Clostridium botulinum A	3
CBLO291272 ncbi	Candidatus Blochmannia pennsylvanicus BPEN	4
CBLO203907 ncbi	Candidatus Blochmannia floridanus	4
CBEI290402 ncbi	Clostridium beijerinckii NCIMB 8052	3
CACE272562 ncbi	Clostridium acetobutylicum ATCC 824	3
BVIE269482 ncbi	Burkholderia vietnamiensis G4	3
BTHA271848 ncbi	Burkholderia thailandensis E264	4
BSUI470137 ncbi	Brucella suis ATCC 23445	3
BSUI204722 ncbi	Brucella suis 1330	3
BSUB ncbi	Bacillus subtilis subtilis 168	3
BSP36773	Burkholderia sp.	3
BSP107806 ncbi	Buchnera aphidicola APS (Acyrthosiphon pisum)	4
BPSE320373 ncbi	Burkholderia pseudomallei 668	4
BPSE320372 ncbi	Burkholderia pseudomallei 1710b	4
BPSE272560 ncbi	Burkholderia pseudomallei K96243	4
BPAR257311 ncbi	Bordetella parapertussis 12822	3
BOVI236	Brucella ovis	3
BMEL359391 ncbi	Brucella melitensis biovar Abortus 2308	3
BMEL224914 ncbi	Brucella melitensis bv. 1 str. 16M	3
BMAL320389 ncbi	Burkholderia mallei NCTC 10247	4
BMAL320388 ncbi	Burkholderia mallei SAVP1	4
BMAL243160 ncbi	Burkholderia mallei ATCC 23344	4
BFRA295405 ncbi	Bacteroides fragilis YCH46	3
BFRA272559 ncbi	Bacteroides fragilis NCTC 9343	3
BCLA66692 ncbi	Bacillus clausii KSM-K16	3
BCIC186490	Candidatus Baumannia cicadellinicola	3
BCER226900 ncbi	Bacillus cereus ATCC 14579	3
BCEN331272 ncbi	Burkholderia cenocepacia HI2424	3
BCEN331271 ncbi	Burkholderia cenocepacia AU 1054	3
BCAN483179 ncbi	Brucella canis ATCC 23365	3
BBRO257310 ncbi	Bordetella bronchiseptica RB50	3
BBAC360095 ncbi	Bartonella bacilliformis KC583	3
BAPH198804 ncbi	Buchnera aphidicola Sg (Schizaphis graminum)	3
BAMB398577 ncbi	Burkholderia ambifaria MC40-6	3
BAMB339670 ncbi	Burkholderia ambifaria AMMD	3
BABO262698 ncbi	Brucella abortus bv. 1 str. 9-941	3
ASP1667	Arthrobacter sp.	3
ASAL382245 ncbi	Aeromonas salmonicida salmonicida A449	4
ANAE240017	Actinomyces oris MG1	3
AMAR329726 ncbi	Acaryochloris marina MBIC11017	3
ALAI441768 ncbi	Acholeplasma laidlawii PG-8A	3
AHYD196024	Aeromonas hydrophila dhakensis	4
ABUT367737 ncbi	Arcobacter butzleri RM4018	3
AAVE397945 ncbi	Acidovorax citrulli AAC00-1	3
AAUR290340 ncbi	Arthrobacter aurescens TC1	3
AAEO224324 ncbi	Aquifex aeolicus VF5	3

Names of the homologs of the genes in the group in each of these orgs

	EG12381	EG12360	EG10661	EG10660
YPSE349747	YPSIP31758_1062	YPSIP31758_2771	YPSIP31758_2770	YPSIP31758_2769
YPSE273123	YPTB2958	YPTB1252	YPTB1253	YPTB1254
YPES386656	YPDSF_1624	YPDSF_2481	YPDSF_2480	YPDSF_4071
YPES377628	YPN_1134	YPN_2765	YPN_2764	YPN_2763
YPES360102	YPA_2376	YPA_0926	YPA_0927	YPA_0928
YPES349746	YPANGOLA_A3537	YPANGOLA_A1315	YPANGOLA_A1314	YPANGOLA_A1313
YPES214092	YPO2648	YPO1212	YPO1213	YPO1214
YPES187410	Y1222	Y2976	Y2975	Y2974
YENT393305	YE0926	YE1391	YE1392	YE1393
XORY360094	XOOORF_4905		XOOORF_4905	XOOORF_4906
XORY342109	XOO0440		XOO0440	XOO0439
XORY291331	XOO0475		XOO0475	XOO0474
XFAS405440	XFASM12_0538		XFASM12_0538	XFASM12_0537
XFAS183190	PD_0481		PD_0481	PD_0480
XFAS160492	XF1197		XF1197	XF1196
XAXO190486	XAC4074		XAC4074	XAC4075
VVUL216895	VV1_3042	VV1_3043	VV1_3042	VV1_3041
VVUL196600	VV1243	VV1242	VV1243	VV1244
VPAR223926	VP1935	VP1936	VP1935	VP1934
VFIS312309		VF1199	VF1201	VF1202
VEIS391735	VEIS_1495	VEIS_4058	VEIS_1495	VEIS_1496
VCHO345073	VC0395_A0874	VC0395_A0873	VC0395_A0874	VC0395_A0875
VCHO	VC1255	VC1254	VC1255	VC1256
TWHI218496	TW0667		TW0667	TW0668
TWHI203267	TW682		TW682	TW683
TDEN326298	TMDEN_0013		TMDEN_0013	TMDEN_2096
TDEN243275	TDE_0335		TDE_0335	TDE_0341
TCRU317025		TCR_0545	TCR_1763	TCR_0463
STYP99287	STM2808	STM2279	STM2278	STM2277
STHE292459	STH321		STH321	STH322
SSP94122	SHEWANA3_1968	SHEWANA3_1967	SHEWANA3_1968	SHEWANA3_1969
SSP387093	SUN_2398		SUN_2398	SUN_2372
SSP292414	TM1040_0518		TM1040_0518	TM1040_0519
SSP1148	SLR0591		SLR0591	SLR1164
SSON300269	SSO_2821	SSO_2295	SSO_2294	SSO_2293
SSED425104	SSED_2307	SSED_2308	SSED_2307	SSED_2306
SSAP342451	SSP1985		SSP1985	SSP1986
SPRO399741	SPRO_3724	SPRO_3273	SPRO_3272	SPRO_3271
SPEA398579	SPEA_2063	SPEA_2062	SPEA_2063	SPEA_2064
SONE211586	SO_2416	SO_2417	SO_2416	SO_2415
SLOI323850		SHEW_1944	SHEW_1945	SHEW_1946
SHIGELLA	NRDF	YFAE	NRDB	NRDA
SHAL458817		SHAL_2034	SHAL_2035	SHAL_2036
SHAE279808	SH2161		SH2161	SH2162
SGLO343509		SG1586	SG1585	SG1584
SFLE373384	SFV_2827	SFV_2309	SFV_2308	SFV_2307
SFLE198214	AAN44197.1	AAN43833.1	AAN43832.1	AAN43831.1
SEPI176280	SE_0514		SE_0514	SE_0513
SEPI176279	SERP0398		SERP1510	SERP0397
SENT454169	SEHA_C2991	SEHA_C2519	SEHA_C2518	SEHA_C2517
SENT321314	SCH_2742	SCH_2282	SCH_2281	SCH_2280
SENT295319	SPA0586	SPA0585	SPA0586	SPA0587
SENT220341	STY2933	STY2508	STY2507	STY2506
SENT209261	T2705	T0585	T0586	T0587
SDYS300267	SDY_2869	SDY_2430	SDY_2429	SDY_2428
SDEN318161		SDEN_1954	SDEN_1953	SDEN_1952
SBOY300268	SBO_2841	SBO_2058	SBO_2059	SBO_2060
SBAL402882	SHEW185_2291	SHEW185_2292	SHEW185_2291	SHEW185_2290
SBAL399599	SBAL195_2408	SBAL195_2409	SBAL195_2408	SBAL195_2407
RSP101510	RHA1_RO06442	RHA1_RO00474	RHA1_RO06442	RHA1_RO06441
RSAL288705	RSAL33209_3484		RSAL33209_3484	RSAL33209_3483
RLEG216596	RL4258	PRL110471	RL4258	RL4259
RFER338969	RFER_3348	RFER_0497	RFER_3348	RFER_3347
REUT264198		REUT_A2722	REUT_A2940	REUT_A2941
RETL347834	RHE_CH03715		RHE_CH03715	RHE_CH03716
PSTU379731		PST_3365	PST_1636	PST_1637
PSP56811		PSYCPRWF_1579	PSYCPRWF_1578	PSYCPRWF_1577
PSP296591	BPRO_1106		BPRO_1106	BPRO_1107
PPUT76869		PPUTGB1_4249	PPUTGB1_4238	PPUTGB1_4236
PPUT351746		PPUT_1197	PPUT_1209	PPUT_1210
PPUT160488		PP_1163	PP_1177	PP_1179
PPRO298386	PBPRA2460	PBPRA2461	PBPRA2460	PBPRA2459
PPEN278197	PEPE_1489		PEPE_1489	PEPE_1488
PNAP365044	PNAP_3386		PNAP_3386	PNAP_3385
PMUL272843		PM0720	PM0719	PM0717
PMEN399739		PMEN_3223	PMEN_3152	PMEN_3151
PLUM243265	PLU1284	PLU3054	PLU3053	PLU3052
PING357804		PING_1108	PING_1109	PING_1112
PHAL326442	PSHAA1417	PSHAA1416	PSHAA1417	PSHAA1418
PFLU220664		PFL_6205	PFL_4524	PFL_4476
PFLU205922		PFL_5689	PFL_4295	PFL_4246
PENT384676		PSEEN1322	PSEEN1335	PSEEN1337
PCRY335284	PCRYO_1117	PCRYO_1116	PCRYO_1117	PCRYO_1122
PATL342610	PATL_2474	PATL_2475	PATL_2474	PATL_2473
PARC259536	PSYC_1268	PSYC_1269	PSYC_1268	PSYC_1263
PACN267747	PPA2122		PPA2122	PPA2121
NSP387092	NIS_0047		NIS_0047	NIS_0053
NMEN374833	NMCC_1201	NMCC_1200	NMCC_1201	NMCC_1204
NMEN272831	NMC1223	NMC1222	NMC1223	NMC1226
NMEN122587	NMA1498	NMA1497	NMA1498	NMA1501
NMEN122586	NMB_1288	NMB_1287	NMB_1288	NMB_1291
NGON242231	NGO0615	NGO6151	NGO0615	NGO0614
NFAR247156	NFA42980	NFA34520	NFA42980	NFA43070
MVAN350058	MVAN_2060	MVAN_3180	MVAN_2060	MVAN_2042
MTUB419947	MRA_3080		MRA_3080	MRA_3083
MTUB336982	TBFG_13064		TBFG_13064	TBFG_13067
MTBRV	RV3048C		RV3048C	RV3051C
MTBCDC	MT3133		MT3133	MT3137
MSUC221988	MS0968	MS0969	MS0968	MS0992
MSP400668	MMWYL1_2997	MMWYL1_2998	MMWYL1_2997	MMWYL1_2996
MSP189918	MKMS_1875	MKMS_2919	MKMS_1875	MKMS_1864
MSP164757	MJLS_1809	MJLS_2905	MJLS_1809	MJLS_1798
MSP164756	MMCS_1828	MMCS_2875	MMCS_1828	MMCS_1817
MSME246196	MSMEG_2313		MSMEG_2313	MSMEG_2299
MPNE272634	MPN322		MPN322	MPN324
MPET420662		MPE_A1127	MPE_A3213	MPE_A3214
MLEP272631	ML1731		ML1731	ML1734
MGIL350054	MFLV_4286	MFLV_3426	MFLV_4286	MFLV_4305
MGEN243273	MG_229		MG_229	MG_231
MFLA265072	MFLA_1224	MFLA_1225	MFLA_1224	MFLA_1223
MBOV410289	BCG_3072C		BCG_3072C	BCG_3075C
MBOV233413	MB3074C		MB3074C	MB3077C
MAVI243243	MAV_3913		MAV_3913	MAV_3919
MAER449447	MAE_43440		MAE_43440	MAE_43520
MABS561007	MAB_3404C		MAB_3404C	MAB_3413C
LXYL281090	LXX17770		LXX17770	LXX17790
LSPH444177	BSPH_1844		BSPH_1844	BSPH_1843
LCHO395495	LCHO_0383	LCHO_1138	LCHO_0383	LCHO_0382
KRAD266940	KRAD_0806		KRAD_0806	KRAD_0805
KPNE272620	GKPORF_B2334	GKPORF_B1946	GKPORF_B1945	GKPORF_B1944
ILOI283942	IL1364	IL1365	IL1364	IL1363
HSOM228400		HSM_1437	HSM_1436	HSM_0366
HSOM205914		HS_0962	HS_0961	HS_1196
HPYL85963	JHP1016		JHP1016	JHP0621
HPYL357544	HPAG1_1029		HPAG1_1029	HPAG1_0662
HPY	HP0364		HP0364	HP0680
HINF71421		HI_1309	HI_1660	HI_1659
HINF374930		CGSHIEE_05130	CGSHIEE_03750	CGSHIEE_03760
HINF281310		NTHI1622	NTHI1962	NTHI1961
HHEP235279	HH_0606		HH_0606	HH_1774
HARS204773		HEAR0755	HEAR2769	HEAR2770
HACI382638	HAC_0411		HAC_0411	HAC_0862
GTHE420246	GTNG_0796		GTNG_0796	GTNG_0795
GKAU235909	GK0912		GK0912	GK0911
FNUC190304	FN0103		FN0103	FN0102
FMAG334413	FMG_1236		FMG_1236	FMG_1316
ESP42895	ENT638_3156	ENT638_2803	ENT638_2802	ENT638_2801
EFER585054	EFER_0394	EFER_0929	EFER_0930	EFER_0931
ECOO157	NRDF	YFAE	NRDB	NRDA
ECOL83334	ECS3539	ECS3119	ECS3118	ECS3117
ECOL585397	ECED1_3131	ECED1_2702	ECED1_2701	ECED1_2700
ECOL585057	ECIAI39_2866	ECIAI39_2378	ECIAI39_2377	ECIAI39_2376
ECOL585056	ECUMN_3002	ECUMN_2573	ECUMN_2572	ECUMN_2571
ECOL585055	EC55989_2944	EC55989_2484	EC55989_2483	EC55989_2482
ECOL585035	ECS88_2942	ECS88_2384	ECS88_2383	ECS88_2382
ECOL585034	ECIAI1_2772	ECIAI1_2314	ECIAI1_2313	ECIAI1_2312
ECOL481805	ECOLC_1030	ECOLC_1415	ECOLC_1416	ECOLC_1417
ECOL469008	ECBD_1043	ECBD_1424	ECBD_1425	ECBD_1426
ECOL439855	ECSMS35_2798	ECSMS35_2387	ECSMS35_2386	ECSMS35_2385
ECOL413997	ECB_02532	ECB_02162	ECB_02161	ECB_02160
ECOL409438	ECSE_2929	ECSE_2497	ECSE_2496	ECSE_2495
ECOL405955	APECO1_3845	APECO1_4324	APECO1_4325	APECO1_4326
ECOL364106	UTI89_C3036	UTI89_C2517	UTI89_C2516	UTI89_C2515
ECOL362663	ECP_2641	ECP_2279	ECP_2278	ECP_2277
ECOL331111	ECE24377A_2957	ECE24377A_2533	ECE24377A_2532	ECE24377A_2531
ECOL316407	ECK2670:JW2651:B2676	ECK2228:JW2230:B2236	ECK2227:JW2229:B2235	ECK2226:JW2228:B2234
ECOL199310	C3229	C2778	C2777	C2776
ECAR218491	ECA3338	ECA1197	ECA1198	ECA1199
CVIO243365		CV_3784	CV_2284	CV_2287
CVES412965		COSY_0481	COSY_0480	COSY_0479
CSP501479	CSE45_1225	CSE45_5279	CSE45_1225	CSE45_1224
CRUT413404		RMAG_0525	RMAG_0524	RMAG_0523
CPSY167879	CPS_2327	CPS_2326	CPS_2327	CPS_2328
CPHY357809	CPHY_3222		CPHY_3222	CPHY_3223
CPER289380	CPR_2355		CPR_2355	CPR_2356
CPER195103	CPF_2670		CPF_2670	CPF_2671
CPER195102	CPE2360		CPE2360	CPE2361
CNOV386415	NT01CX_2365		NT01CX_2365	NT01CX_2366
CMIC443906	CMM_2428		CMM_2428	CMM_2429
CMIC31964	CMS2369		CMS2369	CMS2370
CJEJ407148	C8J_0209		C8J_0209	C8J_0023
CJEJ360109	JJD26997_0229		JJD26997_0229	JJD26997_0026
CJEJ354242	CJJ81176_0256		CJJ81176_0256	CJJ81176_0051
CJEJ195099	CJE_0282		CJE_0282	CJE_0024
CJEJ192222	CJ0231C		CJ0231C	CJ0024
CJEI306537	JK0480		JK0480	JK0478
CHOM360107	CHAB381_0195		CHAB381_0195	CHAB381_1730
CGLU196627	CG2781		CG2781	CG2786
CFET360106	CFF8240_0029		CFF8240_0029	CFF8240_1820
CFEL264202	CF0238		CF0238	CF0237
CEFF196164	CE2419		CE2419	CE2423
CDIP257309	DIP1865		DIP1865	DIP1867
CCUR360105	CCV52592_2093		CCV52592_2093	CCV52592_1122
CCON360104	CCC13826_0297		CCC13826_0297	CCC13826_1895
CBOT536232	CLM_3177		CLM_3177	CLM_3178
CBOT515621	CLJ_B3041		CLJ_B3041	CLJ_B3042
CBOT508765	CLL_A0285		CLL_A0285	CLL_A0284
CBOT498213	CLD_1761		CLD_1761	CLD_1760
CBOT441772	CLI_2863		CLI_2863	CLI_2864
CBOT441770	CLB_2756		CLB_2756	CLB_2757
CBOT36826	CBO2813		CBO2813	CBO2814
CBLO291272	BPEN_495	BPEN_496	BPEN_495	BPEN_494
CBLO203907	BFL479	BFL480	BFL479	BFL478
CBEI290402	CBEI_0195		CBEI_0195	CBEI_0194
CACE272562	CAC3276		CAC3276	CAC3277
BVIE269482		BCEP1808_2568	BCEP1808_0571	BCEP1808_0570
BTHA271848	BTH_I1154	BTH_II0725	BTH_I1154	BTH_I1153
BSUI470137	BSUIS_B0323		BSUIS_B0323	BSUIS_B0322
BSUI204722	BR_A0317		BR_A0317	BR_A0316
BSUB	BSU17390		BSU17390	BSU17380
BSP36773		BCEP18194_A5822	BCEP18194_A3680	BCEP18194_A3679
BSP107806	BU178	BU177	BU178	BU179
BPSE320373	BURPS668_3473	BURPS668_A2323	BURPS668_3473	BURPS668_3474
BPSE320372	BURPS1710B_A3787	BURPS1710B_B0845	BURPS1710B_A3787	BURPS1710B_A3788
BPSE272560	BPSL2991	BPSS1654	BPSL2991	BPSL2992
BPAR257311		BPP4171	BPP3904	BPP3903
BOVI236	GBOORFA0324		GBOORFA0324	GBOORFA0323
BMEL359391	BAB2_0888		BAB2_0888	BAB2_0889
BMEL224914	BMEII0929		BMEII0929	BMEII0930
BMAL320389	BMA10247_3274	BMA10247_A0588	BMA10247_3274	BMA10247_3273
BMAL320388	BMASAVP1_A0430	BMASAVP1_1707	BMASAVP1_A0430	BMASAVP1_A0431
BMAL243160	BMA_2509	BMA_A1669	BMA_2509	BMA_2510
BFRA295405	BF2694		BF2694	BF2693
BFRA272559	BF2714		BF2714	BF2713
BCLA66692	ABC3109		ABC3109	ABC3108
BCIC186490		BCI_0384	BCI_0385	BCI_0386
BCER226900	BC_1355		BC_1355	BC_1354
BCEN331272		BCEN2424_2490	BCEN2424_0596	BCEN2424_0594
BCEN331271		BCEN_1879	BCEN_0113	BCEN_0112
BCAN483179	BCAN_B0318		BCAN_B0318	BCAN_B0317
BBRO257310		BB4641	BB4377	BB4376
BBAC360095	BARBAKC583_0358		BARBAKC583_0358	BARBAKC583_0356
BAPH198804	BUSG172		BUSG172	BUSG173
BAMB398577		BAMMC406_2408	BAMMC406_0523	BAMMC406_0522
BAMB339670		BAMB_2537	BAMB_0498	BAMB_0497
BABO262698	BRUAB2_0864		BRUAB2_0864	BRUAB2_0865
ASP1667	ARTH_2355		ARTH_2355	ARTH_2356
ASAL382245	ASA_1945	ASA_1944	ASA_1945	ASA_1946
ANAE240017	ANA_2285		ANA_2285	ANA_2279
AMAR329726	AM1_F0048		AM1_F0048	AM1_F0047
ALAI441768	ACL_1289		ACL_1289	ACL_1290
AHYD196024	AHA_2334	AHA_2335	AHA_2334	AHA_2333
ABUT367737	ABU_0021		ABU_0021	ABU_0020
AAVE397945	AAVE_0863		AAVE_0863	AAVE_0864
AAUR290340	AAUR_2338		AAUR_2338	AAUR_2339
AAEO224324	AQ_1505		AQ_1505	AQ_094

Organism features enriched in list (features available for 225 out of the 236 orgs in the list)

Feature	Pvalue	Num occurrences in list	Total num occurrences
Arrangment:Pairs	0.0001404	60	112
Arrangment:Singles	0.0000777	132	286
Disease:Brucellosis	0.0083293	5	5
Disease:Bubonic_plague	0.0031703	6	6
Disease:Dysentery	0.0031703	6	6
Disease:Gastroenteritis	3.387e-6	13	13
GC_Content_Range4:0-40	2.880e-6	57	213
GC_Content_Range4:40-60	0.0001144	107	224
GC_Content_Range7:30-40	1.798e-6	40	166
GC_Content_Range7:50-60	0.0000541	59	107
Genome_Size_Range5:0-2	6.428e-8	33	155
Genome_Size_Range5:2-4	0.0000499	55	197
Genome_Size_Range5:4-6	3.811e-15	114	184
Genome_Size_Range9:1-2	3.956e-8	24	128
Genome_Size_Range9:2-3	0.0004077	31	120
Genome_Size_Range9:4-5	1.225e-6	58	96
Genome_Size_Range9:5-6	1.575e-7	56	88
Gram_Stain:Gram_Neg	8.965e-6	153	333
Habitat:Aquatic	0.0007095	22	91
Habitat:Host-associated	0.0060580	92	206
Habitat:Specialized	0.0047397	12	53
Motility:Yes	0.0040123	117	267
Optimal_temp.:35-37	0.0044970	10	13
Optimal_temp.:37	0.0000155	60	106
Oxygen_Req:Anaerobic	0.0004290	25	102
Oxygen_Req:Facultative	0.0060943	90	201
Pathogenic_in:Human	1.497e-9	116	213
Pathogenic_in:No	6.171e-9	55	226
Salinity:Non-halophilic	0.0075924	51	106
Shape:Coccus	0.0030477	21	82
Shape:Rod	3.410e-9	167	347
Temp._range:Hyperthermophilic	0.0001563	1	23
Temp._range:Mesophilic	6.968e-6	202	473
Temp._range:Psychrophilic	0.0025519	8	9
Temp._range:Thermophilic	0.0002288	4	35

ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 220
Effective number of orgs (counting one per cluster within 468 clusters): 200

Organism list
Homologs in each organism in the list
Features enriched in organism list

Follow (ncbi) link, when present, to find the set of organism features for each organism

Org ID	Org Name	# genes in group found in org
XAUT78245 ncbi	Xanthobacter autotrophicus Py2	0
UURE95667	Ureaplasma urealyticum serovar 13	0
UURE95664	Ureaplasma urealyticum serovar 10	0
UPAR505682 ncbi	Ureaplasma parvum serovar 3 str. ATCC 27815	0
UMET351160 ncbi	uncultured methanogenic archaeon RC-I	0
TVOL273116 ncbi	Thermoplasma volcanium GSS1	0
TTUR377629 ncbi	Teredinibacter turnerae T7901	1
TTHE300852 ncbi	Thermus thermophilus HB8	0
TTHE262724 ncbi	Thermus thermophilus HB27	0
TTEN273068 ncbi	Thermoanaerobacter tengcongensis MB4	0
TSP28240	Thermotoga sp.	0
TSP1755	Thermoanaerobacter sp.	0
TPSE340099 ncbi	Thermoanaerobacter pseudethanolicus ATCC 33223	0
TPET390874 ncbi	Thermotoga petrophila RKU-1	0
TPEN368408 ncbi	Thermofilum pendens Hrk 5	0
TMAR243274 ncbi	Thermotoga maritima MSB8	0
TLET416591 ncbi	Thermotoga lettingae TMO	0
TKOD69014 ncbi	Thermococcus kodakarensis KOD1	0
TFUS269800 ncbi	Thermobifida fusca YX	1
TERY203124 ncbi	Trichodesmium erythraeum IMS101	0
TELO197221 ncbi	Thermosynechococcus elongatus BP-1	0
TACI273075 ncbi	Thermoplasma acidophilum DSM 1728	0
SWOL335541 ncbi	Syntrophomonas wolfei wolfei Goettingen	0
STRO369723 ncbi	Salinispora tropica CNB-440	1
STOK273063 ncbi	Sulfolobus tokodaii 7	0
SSP84588 ncbi	Synechococcus sp. WH 8102	0
SSP64471 ncbi	Synechococcus sp. CC9311	0
SSP321332 ncbi	Synechococcus sp. JA-2-3Ba(2-13)	0
SSP321327 ncbi	Synechococcus sp. JA-3-3Ab	0
SSP1131	Synechococcus sp. CC9605	0
SSOL273057 ncbi	Sulfolobus solfataricus P2	0
SRUB309807 ncbi	Salinibacter ruber DSM 13855	0
SPNE170187 ncbi	Streptococcus pneumoniae G54	0
SMEL266834 ncbi	Sinorhizobium meliloti 1021	0
SMED366394 ncbi	Sinorhizobium medicae WSM419	1
SMAR399550 ncbi	Staphylothermus marinus F1	0
SLAC55218	Ruegeria lacuscaerulensis	0
SFUM335543 ncbi	Syntrophobacter fumaroxidans MPOB	0
SELO269084 ncbi	Synechococcus elongatus PCC 6301	0
SDEG203122 ncbi	Saccharophagus degradans 2-40	1
SCO ncbi	Streptomyces coelicolor A3(2)	1
SARE391037 ncbi	Salinispora arenicola CNS-205	1
SACI56780 ncbi	Syntrophus aciditrophicus SB	0
SACI330779 ncbi	Sulfolobus acidocaldarius DSM 639	0
RXYL266117 ncbi	Rubrobacter xylanophilus DSM 9941	0
RSPH349102 ncbi	Rhodobacter sphaeroides ATCC 17025	0
RSPH349101 ncbi	Rhodobacter sphaeroides ATCC 17029	0
RSPH272943 ncbi	Rhodobacter sphaeroides 2.4.1	0
RSP357808 ncbi	Roseiflexus sp. RS-1	0
RRUB269796 ncbi	Rhodospirillum rubrum ATCC 11170	0
RPOM246200 ncbi	Ruegeria pomeroyi DSS-3	0
RPAL316058 ncbi	Rhodopseudomonas palustris HaA2	0
RPAL316057 ncbi	Rhodopseudomonas palustris BisB5	0
RPAL316056 ncbi	Rhodopseudomonas palustris BisB18	1
RPAL316055 ncbi	Rhodopseudomonas palustris BisA53	0
RPAL258594 ncbi	Rhodopseudomonas palustris CGA009	0
RDEN375451 ncbi	Roseobacter denitrificans OCh 114	0
RCAS383372 ncbi	Roseiflexus castenholzii DSM 13941	0
RALB246199	Ruminococcus albus 8	0
PTOR263820 ncbi	Picrophilus torridus DSM 9790	0
PTHE370438 ncbi	Pelotomaculum thermopropionicum SI	0
PSP117	Pirellula sp.	0
PRUM264731 ncbi	Prevotella ruminicola 23	0
PMOB403833 ncbi	Petrotoga mobilis SJ95	0
PMAR93060 ncbi	Prochlorococcus marinus MIT 9215	0
PMAR74547 ncbi	Prochlorococcus marinus MIT 9313	0
PMAR74546 ncbi	Prochlorococcus marinus MIT 9312	0
PMAR59920 ncbi	Prochlorococcus marinus NATL2A	0
PMAR167555 ncbi	Prochlorococcus marinus NATL1A	0
PMAR167546 ncbi	Prochlorococcus marinus MIT 9301	0
PMAR167542 ncbi	Prochlorococcus marinus MIT 9515	0
PMAR167540	Prochlorococcus marinus pastoris MED4ax	0
PMAR167539 ncbi	Prochlorococcus marinus marinus CCMP1375	0
PMAR146891 ncbi	Prochlorococcus marinus AS9601	0
PLUT319225 ncbi	Chlorobium luteolum DSM 273	0
PISL384616 ncbi	Pyrobaculum islandicum DSM 4184	0
PINT246198	Prevotella intermedia 17	0
PHOR70601 ncbi	Pyrococcus horikoshii OT3	0
PGIN242619 ncbi	Porphyromonas gingivalis W83	0
PFUR186497 ncbi	Pyrococcus furiosus DSM 3638	0
PDIS435591 ncbi	Parabacteroides distasonis ATCC 8503	0
PCAR338963 ncbi	Pelobacter carbinolicus DSM 2380	0
PARS340102 ncbi	Pyrobaculum arsenaticum DSM 13514	0
PAER178306 ncbi	Pyrobaculum aerophilum IM2	0
PABY272844 ncbi	Pyrococcus abyssi GE5	0
NWIN323098 ncbi	Nitrobacter winogradskyi Nb-255	1
NSP35761	Nocardioides sp.	0
NSP103690 ncbi	Nostoc sp. PCC 7120	0
NPHA348780 ncbi	Natronomonas pharaonis DSM 2160	0
NOCE323261 ncbi	Nitrosococcus oceani ATCC 19707	1
NHAM323097 ncbi	Nitrobacter hamburgensis X14	1
MXAN246197 ncbi	Myxococcus xanthus DK 1622	1
MTHE349307 ncbi	Methanosaeta thermophila PT	0
MTHE264732 ncbi	Moorella thermoacetica ATCC 39073	0
MTHE187420 ncbi	Methanothermobacter thermautotrophicus Delta H	0
MSTA339860 ncbi	Methanosphaera stadtmanae DSM 3091	0
MSP409	Methylobacterium sp.	1
MSP266779 ncbi	Chelativorans sp. BNC1	1
MSED399549 ncbi	Metallosphaera sedula DSM 5348	0
MMYC272632 ncbi	Mycoplasma mycoides mycoides SC str. PG1	1
MMOB267748 ncbi	Mycoplasma mobile 163K	0
MMAZ192952 ncbi	Methanosarcina mazei Go1	0
MMAR444158 ncbi	Methanococcus maripaludis C6	0
MMAR426368 ncbi	Methanococcus maripaludis C7	0
MMAR402880 ncbi	Methanococcus maripaludis C5	0
MMAR368407 ncbi	Methanoculleus marisnigri JR1	0
MMAR267377 ncbi	Methanococcus maripaludis S2	0
MMAG342108 ncbi	Magnetospirillum magneticum AMB-1	0
MLOT266835 ncbi	Mesorhizobium loti MAFF303099	0
MLAB410358 ncbi	Methanocorpusculum labreanum Z	0
MKAN190192 ncbi	Methanopyrus kandleri AV19	0
MJAN243232 ncbi	Methanocaldococcus jannaschii DSM 2661	0
MHUN323259 ncbi	Methanospirillum hungatei JF-1	0
MEXT419610 ncbi	Methylobacterium extorquens PA1	0
MCAP340047 ncbi	Mycoplasma capricolum capricolum ATCC 27343	1
MCAP243233 ncbi	Methylococcus capsulatus Bath	1
MBUR259564 ncbi	Methanococcoides burtonii DSM 6242	0
MBAR269797 ncbi	Methanosarcina barkeri Fusaro	0
MART243272 ncbi	Mycoplasma arthritidis 158L3-1	0
MAEO419665 ncbi	Methanococcus aeolicus Nankai-3	0
MACE188937 ncbi	Methanosarcina acetivorans C2A	0
LPNE400673 ncbi	Legionella pneumophila Corby	1
LPNE297246 ncbi	Legionella pneumophila Paris	1
LPNE297245 ncbi	Legionella pneumophila Lens	1
LPNE272624 ncbi	Legionella pneumophila pneumophila Philadelphia 1	1
LJOH257314 ncbi	Lactobacillus johnsonii NCC 533	1
LINT267671 ncbi	Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130	0
LINT189518 ncbi	Leptospira interrogans serovar Lai str. 56601	0
LGAS324831 ncbi	Lactobacillus gasseri ATCC 33323	1
LDEL390333 ncbi	Lactobacillus delbrueckii bulgaricus ATCC 11842	0
LDEL321956 ncbi	Lactobacillus delbrueckii bulgaricus ATCC BAA-365	0
LBOR355277 ncbi	Leptospira borgpetersenii serovar Hardjo-bovis JB197	0
LBOR355276 ncbi	Leptospira borgpetersenii serovar Hardjo-bovis L550	0
LBIF456481 ncbi	Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)	0
LBIF355278 ncbi	Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)	0
LACI272621 ncbi	Lactobacillus acidophilus NCFM	1
JSP290400 ncbi	Jannaschia sp. CCS1	0
IHOS453591 ncbi	Ignicoccus hospitalis KIN4/I	0
HWAL362976 ncbi	Haloquadratum walsbyi DSM 16790	0
HMUK485914 ncbi	Halomicrobium mukohataei DSM 12286	0
HMOD498761 ncbi	Heliobacterium modesticaldum Ice1	0
HMAR272569 ncbi	Haloarcula marismortui ATCC 43049	0
HHAL349124 ncbi	Halorhodospira halophila SL1	0
HBUT415426 ncbi	Hyperthermus butylicus DSM 5456	0
GVIO251221 ncbi	Gloeobacter violaceus PCC 7421	0
GURA351605 ncbi	Geobacter uraniireducens Rf4	0
GSUL243231 ncbi	Geobacter sulfurreducens PCA	0
GMET269799 ncbi	Geobacter metallireducens GS-15	0
GFOR411154 ncbi	Gramella forsetii KT0803	1
FTUL458234 ncbi	Francisella tularensis holarctica FTNF002-00	1
FTUL418136 ncbi	Francisella tularensis tularensis WY96-3418	1
FTUL401614 ncbi	Francisella novicida U112	1
FTUL393115 ncbi	Francisella tularensis tularensis FSC198	1
FTUL393011 ncbi	Francisella tularensis holarctica OSU18	1
FTUL351581	Francisella tularensis holarctica FSC200	1
FSUC59374 ncbi	Fibrobacter succinogenes succinogenes S85	0
FSP1855	Frankia sp. EAN1pec	1
FSP106370 ncbi	Frankia sp. CcI3	0
FRANT ncbi	Francisella tularensis tularensis SCHU S4	1
FPHI484022 ncbi	Francisella philomiragia philomiragia ATCC 25017	1
FNOD381764 ncbi	Fervidobacterium nodosum Rt17-B1	0
FJOH376686 ncbi	Flavobacterium johnsoniae UW101	1
FALN326424 ncbi	Frankia alni ACN14a	0
DVUL882 ncbi	Desulfovibrio vulgaris Hildenborough	0
DSP255470 ncbi	Dehalococcoides sp. CBDB1	0
DSP216389 ncbi	Dehalococcoides sp. BAV1	0
DSHI398580 ncbi	Dinoroseobacter shibae DFL 12	0
DRED349161 ncbi	Desulfotomaculum reducens MI-1	0
DPSY177439 ncbi	Desulfotalea psychrophila LSv54	0
DOLE96561 ncbi	Desulfococcus oleovorans Hxd3	0
DNOD246195 ncbi	Dichelobacter nodosus VCS1703A	0
DHAF138119 ncbi	Desulfitobacterium hafniense Y51	0
DGEO319795 ncbi	Deinococcus geothermalis DSM 11300	1
DETH243164 ncbi	Dehalococcoides ethenogenes 195	0
DDES207559 ncbi	Desulfovibrio desulfuricans desulfuricans G20	0
DARO159087 ncbi	Dechloromonas aromatica RCB	1
CTET212717 ncbi	Clostridium tetani E88	0
CTEP194439 ncbi	Chlorobium tepidum TLS	0
CSUL444179 ncbi	Candidatus Sulcia muelleri GWSS	0
CSP78	Caulobacter sp.	1
CPNE182082 ncbi	Chlamydophila pneumoniae TW-183	1
CPNE138677 ncbi	Chlamydophila pneumoniae J138	1
CPNE115713 ncbi	Chlamydophila pneumoniae CWL029	1
CPNE115711 ncbi	Chlamydophila pneumoniae AR39	1
CMET456442 ncbi	Candidatus Methanoregula boonei 6A8	0
CMAQ397948 ncbi	Caldivirga maquilingensis IC-167	0
CKOR374847 ncbi	Candidatus Korarchaeum cryptofilum OPF8	0
CKLU431943 ncbi	Clostridium kluyveri DSM 555	0
CHYD246194 ncbi	Carboxydothermus hydrogenoformans Z-2901	0
CDES477974 ncbi	Candidatus Desulforudis audaxviator MP104C	0
CCHL340177 ncbi	Chlorobium chlorochromatii CaD3	0
CAULO ncbi	Caulobacter crescentus CB15	1
BXEN266265 ncbi	Burkholderia xenovorans LB400	0
BTUR314724 ncbi	Borrelia turicatae 91E135	0
BTHE226186 ncbi	Bacteroides thetaiotaomicron VPI-5482	0
BSP376	Bradyrhizobium sp.	1
BJAP224911 ncbi	Bradyrhizobium japonicum USDA 110	1
BHER314723 ncbi	Borrelia hermsii DAH	0
BGAR290434 ncbi	Borrelia garinii PBi	0
BCER315749 ncbi	Bacillus cytotoxicus NVH 391-98	1
BBUR224326 ncbi	Borrelia burgdorferi B31	0
BAPH372461 ncbi	Buchnera aphidicola Cc (Cinara cedri)	0
BAFZ390236 ncbi	Borrelia afzelii PKo	0
AYEL322098 ncbi	Aster yellows witches-broom phytoplasma AYWB	1
AVAR240292 ncbi	Anabaena variabilis ATCC 29413	0
AURANTIMONAS	Aurantimonas manganoxydans SI85-9A1	0
ASP76114 ncbi	Aromatoleum aromaticum EbN1	0
ASP62977 ncbi	Acinetobacter sp. ADP1	1
ASP62928 ncbi	Azoarcus sp. BH72	1
APER272557 ncbi	Aeropyrum pernix K1	0
AORE350688 ncbi	Alkaliphilus oremlandii OhILAs	0
AMET293826 ncbi	Alkaliphilus metalliredigens QYMF	0
AFUL224325 ncbi	Archaeoglobus fulgidus DSM 4304	0
AEHR187272 ncbi	Alkalilimnicola ehrlichii MLHE-1	1
ADEH290397 ncbi	Anaeromyxobacter dehalogenans 2CP-C	0
ACEL351607 ncbi	Acidothermus cellulolyticus 11B	1
ACAU438753 ncbi	Azorhizobium caulinodans ORS 571	0
ABOR393595 ncbi	Alcanivorax borkumensis SK2	1
ABAU360910 ncbi	Bordetella avium 197N	1
ABAC204669 ncbi	Candidatus Koribacter versatilis Ellin345	1

Names of the homologs of the genes in the group in each of these orgs

	EG12381	EG12360	EG10661	EG10660
XAUT78245
UURE95667
UURE95664
UPAR505682
UMET351160
TVOL273116
TTUR377629				TERTU_0730
TTHE300852
TTHE262724
TTEN273068
TSP28240
TSP1755
TPSE340099
TPET390874
TPEN368408
TMAR243274
TLET416591
TKOD69014
TFUS269800				TFU_3001
TERY203124
TELO197221
TACI273075
SWOL335541
STRO369723				STROP_4388
STOK273063
SSP84588
SSP64471
SSP321332
SSP321327
SSP1131
SSOL273057
SRUB309807
SPNE170187
SMEL266834
SMED366394		SMED_0484
SMAR399550
SLAC55218
SFUM335543
SELO269084
SDEG203122				SDE_2458
SCO				SCO5226
SARE391037				SARE_4877
SACI56780
SACI330779
RXYL266117
RSPH349102
RSPH349101
RSPH272943
RSP357808
RRUB269796
RPOM246200
RPAL316058
RPAL316057
RPAL316056				RPC_3519
RPAL316055
RPAL258594
RDEN375451
RCAS383372
RALB246199
PTOR263820
PTHE370438
PSP117
PRUM264731
PMOB403833
PMAR93060
PMAR74547
PMAR74546
PMAR59920
PMAR167555
PMAR167546
PMAR167542
PMAR167540
PMAR167539
PMAR146891
PLUT319225
PISL384616
PINT246198
PHOR70601
PGIN242619
PFUR186497
PDIS435591
PCAR338963
PARS340102
PAER178306
PABY272844
NWIN323098				NWI_2888
NSP35761
NSP103690
NPHA348780
NOCE323261				NOC_2527
NHAM323097				NHAM_3663
MXAN246197				MXAN_5057
MTHE349307
MTHE264732
MTHE187420
MSTA339860
MSP409		M446_1346
MSP266779				MESO_2703
MSED399549
MMYC272632	MSC_0855
MMOB267748
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR368407
MMAR267377
MMAG342108
MLOT266835
MLAB410358
MKAN190192
MJAN243232
MHUN323259
MEXT419610
MCAP340047	MCAP_0099
MCAP243233				MCA_1634
MBUR259564
MBAR269797
MART243272
MAEO419665
MACE188937
LPNE400673				LPC_1215
LPNE297246				LPP1738
LPNE297245				LPL1738
LPNE272624				LPG1774
LJOH257314	LJ_0591
LINT267671
LINT189518
LGAS324831	LGAS_1705
LDEL390333
LDEL321956
LBOR355277
LBOR355276
LBIF456481
LBIF355278
LACI272621	LBA1750
JSP290400
IHOS453591
HWAL362976
HMUK485914
HMOD498761
HMAR272569
HHAL349124
HBUT415426
GVIO251221
GURA351605
GSUL243231
GMET269799
GFOR411154				GFO_3475
FTUL458234			FTA_1036
FTUL418136			FTW_1010
FTUL401614			FTN_0983
FTUL393115			FTF0532C
FTUL393011			FTH_0963
FTUL351581			FTL_0984
FSUC59374
FSP1855		FRANEAN1_3505
FSP106370
FRANT			GRXCNRDB
FPHI484022			FPHI_1617
FNOD381764
FJOH376686				FJOH_0521
FALN326424
DVUL882
DSP255470
DSP216389
DSHI398580
DRED349161
DPSY177439
DOLE96561
DNOD246195
DHAF138119
DGEO319795	DGEO_1775
DETH243164
DDES207559
DARO159087		DARO_0279
CTET212717
CTEP194439
CSUL444179
CSP78			CAUL_4709
CPNE182082				CPB1021
CPNE138677				CPJ0984
CPNE115713				CPN0984
CPNE115711				CP_0872
CMET456442
CMAQ397948
CKOR374847
CKLU431943
CHYD246194
CDES477974
CCHL340177
CAULO			CC0260
BXEN266265
BTUR314724
BTHE226186
BSP376		BRADO1851
BJAP224911		BLL3766
BHER314723
BGAR290434
BCER315749	BCER98_1076
BBUR224326
BAPH372461
BAFZ390236
AYEL322098	AYWB_026
AVAR240292
AURANTIMONAS
ASP76114
ASP62977				ACIAD0724
ASP62928		AZO1828
APER272557
AORE350688
AMET293826
AFUL224325
AEHR187272				MLG_2102
ADEH290397
ACEL351607				ACEL_1724
ACAU438753
ABOR393595				ABO_0711
ABAU360910				BAV2982
ABAC204669		ACID345_2660

Organism features enriched in list (features available for 203 out of the 220 orgs in the list)

Feature	Pvalue	Num occurrences in list	Total num occurrences
Arrangment:Aggregates	0.0011729	8	9
Arrangment:Chains	0.0000376	16	92
Arrangment:Clusters	0.0057723	1	17
Arrangment:Pairs	2.466e-6	19	112
Disease:Tularemia	0.0049551	5	5
Genome_Size_Range5:0-2	0.0018415	68	155
Genome_Size_Range5:4-6	0.0002198	46	184
Genome_Size_Range9:1-2	0.0009380	59	128
Genome_Size_Range9:3-4	0.0036531	37	77
Genome_Size_Range9:5-6	0.0007043	18	88
Gram_Stain:Gram_Neg	0.0077974	104	333
Gram_Stain:Gram_Pos	1.196e-7	27	150
Habitat:Aquatic	6.503e-12	61	91
Habitat:Host-associated	6.124e-9	41	206
Habitat:Multiple	0.0087394	51	178
Habitat:Specialized	9.072e-7	35	53
Optimal_temp.:37	1.620e-6	17	106
Oxygen_Req:Anaerobic	3.439e-13	68	102
Oxygen_Req:Facultative	2.804e-11	35	201
Pathogenic_in:Animal	0.0009029	12	66
Pathogenic_in:Human	1.205e-20	25	213
Pathogenic_in:No	5.224e-20	130	226
Salinity:Non-halophilic	0.0022384	25	106
Shape:Coccus	0.0054148	19	82
Shape:Irregular_coccus	1.033e-8	17	17
Shape:Oval	0.0049551	5	5
Shape:Rod	0.0001558	101	347
Temp._range:Hyperthermophilic	5.948e-10	22	23
Temp._range:Mesophilic	2.027e-11	134	473
Temp._range:Thermophilic	1.406e-7	27	35

ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 1
Effective number of orgs (counting one per cluster within 468 clusters): 1

Organism list
Homologs in each organism in the list
Features enriched in organism list

Follow (ncbi) link, when present, to find the set of organism features for each organism

Org ID	Org Name	Pvalue	# genes in tgt genome found in org	# genes in group found in org
MGEN243273 ncbi	Mycoplasma genitalium G37	0.0041146	68	3

Names of the homologs of the genes in the group in each of these orgs

	EG12381	EG12360	EG10661	EG10660
MGEN243273	MG_229		MG_229	MG_231

Organism features enriched in list (features available for 1 out of the 1 orgs in the list)

Feature	Pvalue	Num occurrences in list	Total num occurrences
Disease:Urogenital_or_respiratory_tract_infections	0.0034305	1	2

ORGANISMS DEPLETED FOR GROUP:

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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group

Pathway or complex	# Orgs containing it	# of those orgs also containing candidate	Pearson Coeff
GLUTDEG-PWY (glutamate degradation II)	194	132	0.4181
PWY-5148 (acyl-CoA hydrolysis)	227	145	0.4057

PAIRWISE GENOME CONTEXT SCORE MATRIX:

	EG12360	EG10661	EG10660
EG12381	0.998883	0.999946	0.999871
EG12360		0.999518	0.999394
EG10661			0.999952
EG10660

PAIRWISE BLAST SCORES:

	EG12381	EG12360	EG10661	EG10660
EG12381	0.0f0	-	3.5e-10	-
EG12360	-	0.0f0	-	-
EG10661	3.5e-10	-	0.0f0	-
EG10660	-	-	-	0.0f0

PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- PWY0-166 (pyrimidine deoxyribonucleotides de novo biosynthesis I) (degree of match pw to cand: 0.187, degree of match cand to pw: 0.750, average score: 0.671)
  Genes in pathway or complex:
             0.9343 0.8576 EG11418 (dcd) DCTP-DEAM-MONOMER (Dcd)
             0.4318 0.2686 EG10251 (dut) DUTP-PYROP-MONOMER (Dut)
             0.9731 0.9143 G7164 (nudI) G7164-MONOMER (pyrimidine deoxynucleoside triphosphate pyrophosphohydrolase)
             0.6806 0.5217 EG11002 (thyA) THYMIDYLATESYN-MONOMER (thymidylate synthase)
             0.8432 0.7477 EG12302 (tmk) DTMPKI-MONOMER (dTMP kinase)
             0.7909 0.5443 EG10650 (ndk) NUCLEOSIDE-DIP-KIN-MONOMER (Ndk)
   *in cand* 0.9999 0.9995 EG10661 (nrdB) NRDB-MONOMER (NrdB)
   *in cand* 0.9998 0.9994 EG10660 (nrdA) NRDA-MONOMER (NrdA)
   *in cand* 0.9997 0.9989 EG12381 (nrdF) NRDF-MONOMER (NrdF)
             0.9990 0.9961 EG20257 (nrdE) NRDE-MONOMER (NrdE)
             0.6390 0.3040 EG11417 (nrdD) RIBONUCLEOSIDE-TRIP-REDUCT-MONOMER (ribonucleoside-triphosphate reductase)
             0.9260 0.8650 EG10318 (fldA) OX-FLAVODOXIN1 (oxidized flavodoxin 1)
             0.9429 0.8671 EG12697 (fldB) OX-FLAVODOXIN2 (oxidized flavodoxin 2)
             0.9372 0.7509 G7401 (nrdH) G7401-MONOMER (glutaredoxin-like protein)
             0.1898 0.0609 EG11031 (trxA) OX-THIOREDOXIN-MONOMER (oxidized thioredoxin)
             0.7914 0.6840 EG11887 (trxC) OX-THIOREDOXIN2-MONOMER (oxidized thioredoxin 2)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9994 0.9989 EG12360 (yfaE) EG12360-MONOMER (2Fe-2S cluster-containing protein involved in diferric-tyrosyl radical cofactor maintenance)

- DENOVOPURINE2-PWY (purine nucleotides de novo biosynthesis I) (degree of match pw to cand: 0.088, degree of match cand to pw: 0.750, average score: 0.570)
  Genes in pathway or complex:
             0.7452 0.6496 EG11809 (purT) GARTRANSFORMYL2-MONOMER (phosphoribosylglycinamide formyltransferase 2)
             0.9777 0.9537 EG10798 (purM) AIRS-MONOMER (PurM)
             0.5287 0.3467 EG10797 (purL) FGAMSYN-MONOMER (phosphoribosylformylglycinamide synthetase)
             0.1127 0.0028 EG10792 (purD) GLYCRIBONUCSYN-MONOMER (phosphoribosylamine-glycine ligase)
             0.9053 0.7619 EG10794 (purF) PRPPAMIDOTRANS-MONOMER (PurF)
             0.2132 0.1099 EG10796 (purK) PURK-MONOMER (N5-carboxyaminoimidazole ribonucleotide synthetase monomer)
             0.2772 0.1456 EG10793 (purE) PURE-MONOMER (PurE)
             0.3646 0.0589 EG10795 (purH) AICARTRANSIMPCYCLO-CPLX (AICAR transformylase / IMP cyclohydrolase)
             0.7994 0.6581 EG10791 (purC) SAICARSYN-MONOMER (PurC)
             0.0950 0.0685 EG10965 (gmk) GUANYL-KIN-MONOMER (Gmk)
             0.8211 0.7087 EG10420 (guaA) GMP-SYN-MONOMER (GMP synthetase)
             0.8909 0.8297 EG10421 (guaB) IMP-DEHYDROG-MONOMER (GuaB)
             0.1003 0.0349 EG10100 (atpC) ATPC-MONOMER (ATP synthase, F1 complex, ε subunit)
             0.1114 0.0364 EG10105 (atpH) ATPH-MONOMER (ATP synthase, F1 complex, δ subunit)
             0.1381 0.0339 EG10098 (atpA) ATPA-MONOMER (ATP synthase, F1 complex, α subunit)
             0.0740 0.0338 EG10104 (atpG) ATPG-MONOMER (ATP synthase, F1 complex, γ subunit)
             0.1246 0.0342 EG10101 (atpD) ATPD-MONOMER (ATP synthase, F1 complex, β subunit)
             0.0656 0.0359 EG10102 (atpE) ATPE-MONOMER (ATP synthase, F0 complex, c subunit)
             0.1099 0.0423 EG10103 (atpF) ATPF-MONOMER (ATP synthase, F0 complex, b subunit)
             0.0293 0.0011 EG10099 (atpB) ATPB-MONOMER (ATP synthase, F0 complex, a subunit)
             0.7909 0.5443 EG10650 (ndk) NUCLEOSIDE-DIP-KIN-MONOMER (Ndk)
   *in cand* 0.9997 0.9989 EG12381 (nrdF) NRDF-MONOMER (NrdF)
             0.9990 0.9961 EG20257 (nrdE) NRDE-MONOMER (NrdE)
             0.6390 0.3040 EG11417 (nrdD) RIBONUCLEOSIDE-TRIP-REDUCT-MONOMER (ribonucleoside-triphosphate reductase)
   *in cand* 0.9999 0.9995 EG10661 (nrdB) NRDB-MONOMER (NrdB)
   *in cand* 0.9998 0.9994 EG10660 (nrdA) NRDA-MONOMER (NrdA)
             0.4975 0.2907 EG10032 (adk) ADENYL-KIN-MONOMER (adenylate kinase)
             0.7879 0.4289 EG11314 (purB) ASL-MONOMER (5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole lyase [multifunctional])
             0.1047 0.0669 EG10790 (purA) ADENYLOSUCCINATE-SYN-MONOMER (PurA)
             0.9372 0.7509 G7401 (nrdH) G7401-MONOMER (glutaredoxin-like protein)
             0.9260 0.8650 EG10318 (fldA) OX-FLAVODOXIN1 (oxidized flavodoxin 1)
             0.9429 0.8671 EG12697 (fldB) OX-FLAVODOXIN2 (oxidized flavodoxin 2)
             0.1898 0.0609 EG11031 (trxA) OX-THIOREDOXIN-MONOMER (oxidized thioredoxin)
             0.7914 0.6840 EG11887 (trxC) OX-THIOREDOXIN2-MONOMER (oxidized thioredoxin 2)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9994 0.9989 EG12360 (yfaE) EG12360-MONOMER (2Fe-2S cluster-containing protein involved in diferric-tyrosyl radical cofactor maintenance)

- PWY-6126 (adenosine nucleotides de novo biosynthesis) (degree of match pw to cand: 0.136, degree of match cand to pw: 0.750, average score: 0.534)
  Genes in pathway or complex:
             0.1047 0.0669 EG10790 (purA) ADENYLOSUCCINATE-SYN-MONOMER (PurA)
             0.7879 0.4289 EG11314 (purB) ASL-MONOMER (5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole lyase [multifunctional])
             0.4975 0.2907 EG10032 (adk) ADENYL-KIN-MONOMER (adenylate kinase)
   *in cand* 0.9999 0.9995 EG10661 (nrdB) NRDB-MONOMER (NrdB)
   *in cand* 0.9998 0.9994 EG10660 (nrdA) NRDA-MONOMER (NrdA)
             0.6390 0.3040 EG11417 (nrdD) RIBONUCLEOSIDE-TRIP-REDUCT-MONOMER (ribonucleoside-triphosphate reductase)
   *in cand* 0.9997 0.9989 EG12381 (nrdF) NRDF-MONOMER (NrdF)
             0.9990 0.9961 EG20257 (nrdE) NRDE-MONOMER (NrdE)
             0.7909 0.5443 EG10650 (ndk) NUCLEOSIDE-DIP-KIN-MONOMER (Ndk)
             0.1003 0.0349 EG10100 (atpC) ATPC-MONOMER (ATP synthase, F1 complex, ε subunit)
             0.1114 0.0364 EG10105 (atpH) ATPH-MONOMER (ATP synthase, F1 complex, δ subunit)
             0.1381 0.0339 EG10098 (atpA) ATPA-MONOMER (ATP synthase, F1 complex, α subunit)
             0.0740 0.0338 EG10104 (atpG) ATPG-MONOMER (ATP synthase, F1 complex, γ subunit)
             0.1246 0.0342 EG10101 (atpD) ATPD-MONOMER (ATP synthase, F1 complex, β subunit)
             0.0656 0.0359 EG10102 (atpE) ATPE-MONOMER (ATP synthase, F0 complex, c subunit)
             0.1099 0.0423 EG10103 (atpF) ATPF-MONOMER (ATP synthase, F0 complex, b subunit)
             0.0293 0.0011 EG10099 (atpB) ATPB-MONOMER (ATP synthase, F0 complex, a subunit)
             0.9372 0.7509 G7401 (nrdH) G7401-MONOMER (glutaredoxin-like protein)
             0.9260 0.8650 EG10318 (fldA) OX-FLAVODOXIN1 (oxidized flavodoxin 1)
             0.9429 0.8671 EG12697 (fldB) OX-FLAVODOXIN2 (oxidized flavodoxin 2)
             0.1898 0.0609 EG11031 (trxA) OX-THIOREDOXIN-MONOMER (oxidized thioredoxin)
             0.7914 0.6840 EG11887 (trxC) OX-THIOREDOXIN2-MONOMER (oxidized thioredoxin 2)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9994 0.9989 EG12360 (yfaE) EG12360-MONOMER (2Fe-2S cluster-containing protein involved in diferric-tyrosyl radical cofactor maintenance)

- PWY-6125 (guanosine nucleotides de novo biosynthesis) (degree of match pw to cand: 0.214, degree of match cand to pw: 0.750, average score: 0.689)
  Genes in pathway or complex:
             0.8909 0.8297 EG10421 (guaB) IMP-DEHYDROG-MONOMER (GuaB)
             0.8211 0.7087 EG10420 (guaA) GMP-SYN-MONOMER (GMP synthetase)
             0.0950 0.0685 EG10965 (gmk) GUANYL-KIN-MONOMER (Gmk)
   *in cand* 0.9999 0.9995 EG10661 (nrdB) NRDB-MONOMER (NrdB)
   *in cand* 0.9998 0.9994 EG10660 (nrdA) NRDA-MONOMER (NrdA)
             0.6390 0.3040 EG11417 (nrdD) RIBONUCLEOSIDE-TRIP-REDUCT-MONOMER (ribonucleoside-triphosphate reductase)
   *in cand* 0.9997 0.9989 EG12381 (nrdF) NRDF-MONOMER (NrdF)
             0.9990 0.9961 EG20257 (nrdE) NRDE-MONOMER (NrdE)
             0.7909 0.5443 EG10650 (ndk) NUCLEOSIDE-DIP-KIN-MONOMER (Ndk)
             0.9372 0.7509 G7401 (nrdH) G7401-MONOMER (glutaredoxin-like protein)
             0.9260 0.8650 EG10318 (fldA) OX-FLAVODOXIN1 (oxidized flavodoxin 1)
             0.9429 0.8671 EG12697 (fldB) OX-FLAVODOXIN2 (oxidized flavodoxin 2)
             0.1898 0.0609 EG11031 (trxA) OX-THIOREDOXIN-MONOMER (oxidized thioredoxin)
             0.7914 0.6840 EG11887 (trxC) OX-THIOREDOXIN2-MONOMER (oxidized thioredoxin 2)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9994 0.9989 EG12360 (yfaE) EG12360-MONOMER (2Fe-2S cluster-containing protein involved in diferric-tyrosyl radical cofactor maintenance)

- PRPP-PWY (superpathway of histidine, purine, and pyrimidine biosynthesis) (degree of match pw to cand: 0.055, degree of match cand to pw: 0.750, average score: 0.550)
  Genes in pathway or complex:
             0.9296 0.8346 EG10449 (hisG) ATPPHOSRIBOSTRANS-MONOMER (HisG)
             0.9682 0.9588 EG10451 (hisI) HISTCYCLOPRATPPHOS (phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphatase)
             0.9333 0.8857 EG10444 (hisA) PRIBFAICARPISOM-MONOMER (N-(5'-phospho-L-ribosyl-formimino)-5-amino-1-(5'-phosphoribosyl)-4-imidazolecarboxamide isomerase)
             0.9679 0.9602 EG10448 (hisF) CYCLASE-MONOMER (imidazole glycerol phosphate synthase, HisF subunit)
             0.8482 0.7879 EG10450 (hisH) GLUTAMIDOTRANS-MONOMER (imidazole glycerol phosphate synthase, HisH subunit)
             0.8925 0.8141 EG10445 (hisB) IMIDPHOSPHADEHYDHISTIDPHOSPHA-MONOMER (HisB)
             0.9732 0.9677 EG10446 (hisC) HISTPHOSTRANS-MONOMER (HisC)
             0.9220 0.8465 EG10447 (hisD) HISTDEHYD-MONOMER (HisD)
             0.1047 0.0669 EG10790 (purA) ADENYLOSUCCINATE-SYN-MONOMER (PurA)
             0.7879 0.4289 EG11314 (purB) ASL-MONOMER (5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole lyase [multifunctional])
             0.4975 0.2907 EG10032 (adk) ADENYL-KIN-MONOMER (adenylate kinase)
   *in cand* 0.9999 0.9995 EG10661 (nrdB) NRDB-MONOMER (NrdB)
   *in cand* 0.9998 0.9994 EG10660 (nrdA) NRDA-MONOMER (NrdA)
             0.6390 0.3040 EG11417 (nrdD) RIBONUCLEOSIDE-TRIP-REDUCT-MONOMER (ribonucleoside-triphosphate reductase)
   *in cand* 0.9997 0.9989 EG12381 (nrdF) NRDF-MONOMER (NrdF)
             0.9990 0.9961 EG20257 (nrdE) NRDE-MONOMER (NrdE)
             0.1003 0.0349 EG10100 (atpC) ATPC-MONOMER (ATP synthase, F1 complex, ε subunit)
             0.1114 0.0364 EG10105 (atpH) ATPH-MONOMER (ATP synthase, F1 complex, δ subunit)
             0.1381 0.0339 EG10098 (atpA) ATPA-MONOMER (ATP synthase, F1 complex, α subunit)
             0.0740 0.0338 EG10104 (atpG) ATPG-MONOMER (ATP synthase, F1 complex, γ subunit)
             0.1246 0.0342 EG10101 (atpD) ATPD-MONOMER (ATP synthase, F1 complex, β subunit)
             0.0656 0.0359 EG10102 (atpE) ATPE-MONOMER (ATP synthase, F0 complex, c subunit)
             0.1099 0.0423 EG10103 (atpF) ATPF-MONOMER (ATP synthase, F0 complex, b subunit)
             0.0293 0.0011 EG10099 (atpB) ATPB-MONOMER (ATP synthase, F0 complex, a subunit)
             0.8909 0.8297 EG10421 (guaB) IMP-DEHYDROG-MONOMER (GuaB)
             0.8211 0.7087 EG10420 (guaA) GMP-SYN-MONOMER (GMP synthetase)
             0.0950 0.0685 EG10965 (gmk) GUANYL-KIN-MONOMER (Gmk)
             0.7994 0.6581 EG10791 (purC) SAICARSYN-MONOMER (PurC)
             0.3646 0.0589 EG10795 (purH) AICARTRANSIMPCYCLO-CPLX (AICAR transformylase / IMP cyclohydrolase)
             0.2772 0.1456 EG10793 (purE) PURE-MONOMER (PurE)
             0.2132 0.1099 EG10796 (purK) PURK-MONOMER (N5-carboxyaminoimidazole ribonucleotide synthetase monomer)
             0.9053 0.7619 EG10794 (purF) PRPPAMIDOTRANS-MONOMER (PurF)
             0.1127 0.0028 EG10792 (purD) GLYCRIBONUCSYN-MONOMER (phosphoribosylamine-glycine ligase)
             0.5287 0.3467 EG10797 (purL) FGAMSYN-MONOMER (phosphoribosylformylglycinamide synthetase)
             0.9777 0.9537 EG10798 (purM) AIRS-MONOMER (PurM)
             0.7452 0.6496 EG11809 (purT) GARTRANSFORMYL2-MONOMER (phosphoribosylglycinamide formyltransferase 2)
             0.1823 0.0813 EG11539 (pyrH) UMPKI-MONOMER (PyrH)
             0.4496 0.2607 EG10810 (pyrG) CTPSYN-MONOMER (PyrG)
             0.7909 0.5443 EG10650 (ndk) NUCLEOSIDE-DIP-KIN-MONOMER (Ndk)
             0.2461 0.0587 EG10134 (carA) CARBPSYN-SMALL (CarA)
             0.1892 0.0689 EG10135 (carB) CARBPSYN-LARGE (CarB)
             0.0481 0.0301 EG10811 (pyrI) ASPCARBREG-MONOMER (aspartate carbamoyltransferase, PyrI subunit)
             0.0529 0.0286 EG10805 (pyrB) ASPCARBCAT-MONOMER (aspartate carbamoyltransferase, PyrB subunit)
             0.8207 0.6230 EG10806 (pyrC) DIHYDROOROT-MONOMER (PyrC)
             0.2901 0.0349 EG10808 (pyrE) OROPRIBTRANS-MONOMER (PyrE)
             0.9892 0.9816 EG10809 (pyrF) OROTPDECARB-MONOMER (PyrF)
             0.7194 0.4267 EG10807 (pyrD) DIHYDROOROTOX-MONOMER (dihydroorotate dehydrogenase)
             0.6947 0.4810 EG10774 (prs) PRPPSYN-MONOMER (ribose-phosphate diphosphokinase)
             0.0830 0.0287 EG10723 (phnN) EG10723-MONOMER (ribose 1,5-bisphosphokinase)
             0.1247 0.0609 EG10220 (deoB) PPENTOMUT-MONOMER (phosphopentomutase)
             0.9372 0.7509 G7401 (nrdH) G7401-MONOMER (glutaredoxin-like protein)
             0.9260 0.8650 EG10318 (fldA) OX-FLAVODOXIN1 (oxidized flavodoxin 1)
             0.9429 0.8671 EG12697 (fldB) OX-FLAVODOXIN2 (oxidized flavodoxin 2)
             0.1898 0.0609 EG11031 (trxA) OX-THIOREDOXIN-MONOMER (oxidized thioredoxin)
             0.7914 0.6840 EG11887 (trxC) OX-THIOREDOXIN2-MONOMER (oxidized thioredoxin 2)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9994 0.9989 EG12360 (yfaE) EG12360-MONOMER (2Fe-2S cluster-containing protein involved in diferric-tyrosyl radical cofactor maintenance)
   This pathway has holes

- RIBONUCLEOSIDE-DIP-REDUCTI-CPLX (ribonucleoside-diphosphate reductase [multifunctional]) (degree of match pw to cand: 1.000, degree of match cand to pw: 0.500, average score: 1.000)
  Genes in pathway or complex:
   *in cand* 0.9999 0.9995 EG10661 (nrdB) NRDB-MONOMER (NrdB)
   *in cand* 0.9998 0.9994 EG10660 (nrdA) NRDA-MONOMER (NrdA)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9994 0.9989 EG12360 (yfaE) EG12360-MONOMER (2Fe-2S cluster-containing protein involved in diferric-tyrosyl radical cofactor maintenance)
   *in cand* 0.9997 0.9989 EG12381 (nrdF) NRDF-MONOMER (NrdF)

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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10660 EG10661 EG12360 (centered at EG10661)
EG12381 (centered at EG12381)

ORG:REPLICON:CIRC?\GENE	IN REF LIST	EG12381	EG12360	EG10661	EG10660
		334/623	146/623	348/623	366/623
AAEO224324:0:T	yes	999	-	999	0
AAUR290340:2:T	yes	0	-	0	1
AAVE397945:0:T	yes	0	-	0	1
ABAC204669:0:T	yes	-	0	-	-
ABAU360910:0:T	yes	-	-	-	0
ABOR393595:0:T	yes	-	-	-	0
ABUT367737:0:T	yes	1	-	1	0
ACEL351607:0:T	yes	-	-	-	0
ACRY349163:8:T	yes	0	-	0	-
AEHR187272:0:T	yes	-	-	-	0
AFER243159:0:T	yes	-	-	0	1
AHYD196024:0:T	yes	1	2	1	0
ALAI441768:0:T	yes	0	-	0	1
AMAR234826:0:T	yes	0	-	0	-
AMAR329726:3:T	yes	1	-	1	0
ANAE240017:0:T	yes	6	-	6	0
APHA212042:0:T	yes	0	-	0	-
APLE416269:0:T	yes	-	-	1	0
APLE434271:0:T	no	-	-	1	0
ASAL382245:5:T	yes	1	0	1	2
ASP1667:3:T	yes	0	-	0	1
ASP232721:2:T	yes	-	-	1	0
ASP62928:0:T	yes	-	0	-	-
ASP62977:0:T	yes	-	-	-	0
AYEL322098:4:T	yes	0	-	-	-
BABO262698:0:T	no	0	-	0	1
BAMB339670:3:T	no	-	2093	1	0
BAMB398577:3:T	no	-	1914	1	0
BAMY326423:0:T	yes	0	-	0	-
BANT260799:0:T	no	0	-	0	-
BANT261594:2:T	no	0	-	0	-
BANT568206:2:T	yes	0	-	0	-
BANT592021:2:T	no	0	-	0	-
BAPH198804:0:T	yes	0	-	0	1
BBAC264462:0:T	yes	-	-	0	1
BBAC360095:0:T	yes	1	-	1	0
BBRO257310:0:T	yes	-	264	1	0
BCAN483179:0:T	no	1	-	1	0
BCEN331271:2:T	no	-	1793	1	0
BCEN331272:3:T	yes	-	1892	1	0
BCER226900:1:T	yes	1	-	1	0
BCER288681:0:T	no	0	-	0	-
BCER315749:1:T	yes	0	-	-	-
BCER405917:1:T	yes	0	-	0	-
BCER572264:1:T	no	0	-	0	-
BCIC186490:0:T	yes	-	0	1	2
BCLA66692:0:T	yes	1	-	1	0
BFRA272559:1:T	yes	1	-	1	0
BFRA295405:0:T	no	1	-	1	0
BHAL272558:0:T	yes	0	-	0	-
BHEN283166:0:T	yes	1	-	-	0
BJAP224911:0:F	yes	-	0	-	-
BLIC279010:0:T	yes	0	-	0	-
BLON206672:0:T	yes	0	-	0	-
BMAL243160:0:T	no	-	0	-	-
BMAL243160:1:T	no	0	-	0	1
BMAL320388:0:T	no	-	0	-	-
BMAL320388:1:T	no	0	-	0	1
BMAL320389:0:T	yes	-	0	-	-
BMAL320389:1:T	yes	1	-	1	0
BMEL224914:0:T	no	0	-	0	1
BMEL359391:0:T	no	0	-	0	1
BOVI236:0:T	yes	1	-	1	0
BPAR257311:0:T	no	-	252	1	0
BPER257313:0:T	yes	-	0	-	2359
BPET94624:0:T	yes	-	4180	-	0
BPSE272560:0:T	yes	-	0	-	-
BPSE272560:1:T	yes	0	-	0	1
BPSE320372:0:T	no	-	0	-	-
BPSE320372:1:T	no	0	-	0	1
BPSE320373:0:T	no	-	0	-	-
BPSE320373:1:T	no	0	-	0	1
BPUM315750:0:T	yes	0	-	0	-
BQUI283165:0:T	yes	1	-	-	0
BSP107806:2:T	yes	1	0	1	2
BSP36773:2:T	yes	-	2185	1	0
BSP376:0:T	yes	-	0	-	-
BSUB:0:T	yes	1	-	1	0
BSUI204722:0:T	yes	1	-	1	0
BSUI470137:0:T	no	1	-	1	0
BTHA271848:0:T	no	-	0	-	-
BTHA271848:1:T	no	1	-	1	0
BTHU281309:1:T	no	0	-	0	-
BTHU412694:1:T	no	0	-	0	-
BTRI382640:1:T	yes	1	-	-	0
BVIE269482:7:T	yes	-	1981	1	0
BWEI315730:4:T	yes	0	-	0	-
CABO218497:0:T	yes	0	-	-	1
CACE272562:1:T	yes	0	-	0	1
CAULO:0:T	yes	-	-	0	-
CBEI290402:0:T	yes	1	-	1	0
CBLO203907:0:T	yes	1	2	1	0
CBLO291272:0:T	no	1	2	1	0
CBOT36826:1:T	no	0	-	0	1
CBOT441770:0:T	yes	0	-	0	1
CBOT441771:0:T	no	0	-	0	-
CBOT441772:1:T	no	0	-	0	1
CBOT498213:1:T	no	0	-	0	1
CBOT508765:1:T	yes	1	-	1	0
CBOT515621:2:T	yes	0	-	0	1
CBOT536232:0:T	no	0	-	0	1
CBUR227377:1:T	yes	1	-	-	0
CBUR360115:1:T	no	1	-	-	0
CBUR434922:2:T	no	0	-	-	1
CCAV227941:1:T	yes	0	-	-	1
CCON360104:2:T	yes	0	-	0	55
CCUR360105:0:T	yes	1961	-	1961	0
CDIF272563:1:T	yes	0	-	0	-
CDIP257309:0:T	yes	0	-	0	2
CEFF196164:0:F	yes	0	-	0	4
CFEL264202:1:T	yes	1	-	1	0
CFET360106:0:T	yes	0	-	0	1738
CGLU196627:0:T	yes	0	-	0	5
CHOM360107:1:T	yes	0	-	0	1488
CHUT269798:0:T	yes	-	-	1	0
CJAP155077:0:T	yes	-	-	0	1
CJEI306537:0:T	yes	2	-	2	0
CJEJ192222:0:T	yes	186	-	186	0
CJEJ195099:0:T	no	253	-	253	0
CJEJ354242:2:T	yes	196	-	196	0
CJEJ360109:0:T	yes	185	-	185	0
CJEJ407148:0:T	no	190	-	190	0
CMIC31964:2:T	yes	0	-	0	1
CMIC443906:2:T	yes	0	-	0	1
CMUR243161:1:T	yes	1	-	-	0
CNOV386415:0:T	yes	0	-	0	1
CPEL335992:0:T	yes	0	-	0	-
CPER195102:1:T	yes	0	-	0	1
CPER195103:0:T	no	0	-	0	1
CPER289380:3:T	yes	0	-	0	1
CPHY357809:0:T	yes	0	-	0	1
CPNE115711:1:T	yes	-	-	-	0
CPNE115713:0:T	no	-	-	-	0
CPNE138677:0:T	no	-	-	-	0
CPNE182082:0:T	no	-	-	-	0
CPRO264201:0:F	yes	-	-	1	0
CPSY167879:0:T	yes	1	0	1	2
CRUT413404:0:T	yes	-	2	1	0
CSAL290398:0:T	yes	0	-	-	303
CSP501479:3:F	yes	-	0	-	-
CSP501479:8:F	yes	1	-	1	0
CSP78:2:T	yes	-	-	0	-
CTRA471472:0:T	yes	1	-	-	0
CTRA471473:0:T	no	1	-	-	0
CVES412965:0:T	yes	-	2	1	0
CVIO243365:0:T	yes	-	1541	0	3
DARO159087:0:T	yes	-	0	-	-
DGEO319795:1:T	yes	0	-	-	-
DRAD243230:1:T	yes	1	-	-	0
ECAN269484:0:T	yes	0	-	0	-
ECAR218491:0:T	yes	2159	0	1	2
ECHA205920:0:T	yes	0	-	0	-
ECOL199310:0:T	no	449	2	1	0
ECOL316407:0:T	no	430	2	1	0
ECOL331111:6:T	no	405	2	1	0
ECOL362663:0:T	no	367	2	1	0
ECOL364106:1:T	no	518	2	1	0
ECOL405955:2:T	yes	489	2	1	0
ECOL409438:6:T	yes	445	2	1	0
ECOL413997:0:T	no	379	2	1	0
ECOL439855:4:T	no	398	2	1	0
ECOL469008:0:T	no	0	389	390	391
ECOL481805:0:T	no	0	391	392	393
ECOL585034:0:T	no	450	2	1	0
ECOL585035:0:T	no	539	2	1	0
ECOL585055:0:T	no	454	2	1	0
ECOL585056:2:T	no	433	2	1	0
ECOL585057:0:T	no	491	2	1	0
ECOL585397:0:T	no	426	2	1	0
ECOL83334:0:T	no	435	2	1	0
ECOLI:0:T	no	449	2	1	0
ECOO157:0:T	no	435	2	1	0
EFAE226185:3:T	yes	0	-	-	1
EFER585054:1:T	yes	0	527	528	529
ELIT314225:0:T	yes	0	-	0	-
ERUM254945:0:T	yes	0	-	0	-
ERUM302409:0:T	no	0	-	0	-
ESP42895:1:T	yes	362	2	1	0
FJOH376686:0:T	yes	-	-	-	0
FMAG334413:1:T	yes	0	-	0	80
FNUC190304:0:T	yes	1	-	1	0
FPHI484022:1:T	yes	-	-	0	-
FRANT:0:T	no	-	-	0	-
FSP1855:0:T	yes	-	0	-	-
FTUL351581:0:T	no	-	-	0	-
FTUL393011:0:T	no	-	-	0	-
FTUL393115:0:T	yes	-	-	0	-
FTUL401614:0:T	yes	-	-	0	-
FTUL418136:0:T	no	-	-	0	-
FTUL458234:0:T	no	-	-	0	-
GBET391165:0:T	yes	0	-	0	-
GFOR411154:0:T	yes	-	-	-	0
GKAU235909:1:T	yes	1	-	1	0
GOXY290633:5:T	yes	0	-	0	-
GTHE420246:1:T	yes	1	-	1	0
HACI382638:1:T	yes	0	-	0	405
HARS204773:0:T	yes	-	0	1904	1905
HAUR316274:2:T	yes	-	-	0	1
HCHE349521:0:T	yes	-	-	0	1
HDUC233412:0:T	yes	-	-	1	0
HHEP235279:0:T	yes	0	-	0	1186
HINF281310:0:T	yes	-	0	296	295
HINF374930:0:T	yes	-	242	0	2
HINF71421:0:T	no	-	0	349	348
HNEP81032:0:T	yes	0	-	0	-
HPY:0:T	no	0	-	0	319
HPYL357544:1:T	yes	380	-	380	0
HPYL85963:0:T	no	391	-	391	0
HSAL478009:4:T	yes	-	-	0	1
HSOM205914:1:T	yes	-	1	0	236
HSOM228400:0:T	no	-	1081	1080	0
HSP64091:2:T	no	-	-	0	1
ILOI283942:0:T	yes	1	2	1	0
JSP375286:0:T	yes	-	-	0	1
KPNE272620:2:T	yes	378	2	1	0
KRAD266940:2:F	yes	0	-	0	1
LACI272621:0:T	yes	0	-	-	-
LBRE387344:2:T	yes	0	-	0	-
LCAS321967:1:T	yes	1	-	-	0
LCHO395495:0:T	yes	1	761	1	0
LGAS324831:0:T	yes	0	-	-	-
LHEL405566:0:T	yes	2	-	-	0
LINN272626:1:T	no	0	-	0	-
LINT363253:3:T	yes	-	-	1	0
LJOH257314:0:T	yes	0	-	-	-
LLAC272622:5:T	yes	0	-	-	1
LLAC272623:0:T	yes	0	-	-	1
LMES203120:1:T	yes	2	-	-	0
LMON169963:0:T	no	0	-	0	-
LMON265669:0:T	yes	0	-	0	-
LPLA220668:0:T	yes	0	-	0	-
LPNE272624:0:T	no	-	-	-	0
LPNE297245:1:F	no	-	-	-	0
LPNE297246:1:F	yes	-	-	-	0
LPNE400673:0:T	no	-	-	-	0
LREU557436:0:T	yes	0	-	-	1
LSAK314315:0:T	yes	0	-	-	1
LSPH444177:1:T	yes	1	-	1	0
LWEL386043:0:T	yes	0	-	0	-
LXYL281090:0:T	yes	0	-	0	1
MABS561007:1:T	yes	0	-	0	9
MAER449447:0:T	yes	0	-	0	8
MAQU351348:2:T	yes	-	-	0	1
MAVI243243:0:T	yes	0	-	0	6
MBOV233413:0:T	no	0	-	0	3
MBOV410289:0:T	no	0	-	0	3
MCAP243233:0:T	yes	-	-	-	0
MCAP340047:0:T	yes	0	-	-	-
MFLA265072:0:T	yes	1	2	1	0
MFLO265311:0:T	yes	0	-	0	-
MGEN243273:0:T	yes	0	-	0	2
MGIL350054:3:T	yes	865	0	865	884
MHYO262719:0:T	yes	0	-	0	-
MHYO262722:0:T	no	0	-	0	-
MHYO295358:0:T	no	0	-	0	-
MLEP272631:0:T	yes	0	-	0	2
MMAR394221:0:T	yes	0	-	0	-
MMYC272632:0:T	yes	0	-	-	-
MPEN272633:0:T	yes	0	-	0	-
MPET420662:1:T	yes	-	0	2080	2081
MPNE272634:0:T	yes	0	-	0	2
MPUL272635:0:T	yes	0	-	0	-
MSME246196:0:T	yes	14	-	14	0
MSP164756:1:T	no	11	1064	11	0
MSP164757:0:T	no	11	1104	11	0
MSP189918:2:T	yes	10	1054	10	0
MSP266779:3:T	yes	-	-	-	0
MSP400668:0:T	yes	1	2	1	0
MSP409:2:T	yes	-	0	-	-
MSUC221988:0:T	yes	0	1	0	24
MSYN262723:0:T	yes	0	-	0	-
MTBCDC:0:T	no	0	-	0	4
MTBRV:0:T	no	0	-	0	3
MTUB336982:0:T	no	0	-	0	3
MTUB419947:0:T	yes	0	-	0	3
MVAN350058:0:T	yes	18	1130	18	0
MXAN246197:0:T	yes	-	-	-	0
NARO279238:0:T	yes	0	-	0	-
NEUR228410:0:T	yes	-	0	-	1854
NEUT335283:2:T	yes	-	0	-	1403
NFAR247156:2:T	yes	856	0	856	865
NGON242231:0:T	yes	1	2	1	0
NHAM323097:2:T	yes	-	-	-	0
NMEN122586:0:T	no	1	0	1	4
NMEN122587:0:T	yes	1	0	1	4
NMEN272831:0:T	no	1	0	1	3
NMEN374833:0:T	no	1	0	1	4
NMUL323848:3:T	yes	-	-	1	0
NOCE323261:1:T	yes	-	-	-	0
NSEN222891:0:T	yes	0	-	0	-
NSP387092:0:T	yes	0	-	0	5
NWIN323098:0:T	yes	-	-	-	0
OANT439375:4:T	yes	0	-	0	-
OCAR504832:0:T	yes	-	-	2	0
OIHE221109:0:T	yes	0	-	0	-
OTSU357244:0:F	yes	0	-	0	-
PACN267747:0:T	yes	1	-	1	0
PAER208963:0:T	yes	-	-	1	0
PAER208964:0:T	no	-	-	0	1
PARC259536:0:T	yes	5	6	5	0
PAST100379:0:T	yes	0	-	0	-
PATL342610:0:T	yes	1	2	1	0
PCRY335284:1:T	yes	1	0	1	6
PENT384676:0:T	yes	-	0	10	11
PFLU205922:0:T	yes	-	1465	54	0
PFLU216595:1:T	yes	-	-	38	0
PFLU220664:0:T	yes	-	1691	43	0
PHAL326442:1:T	yes	1	0	1	2
PING357804:0:T	yes	-	0	1	4
PLUM243265:0:F	yes	0	1806	1805	1804
PMEN399739:0:T	yes	-	73	1	0
PMUL272843:1:T	yes	-	3	2	0
PNAP365044:8:T	yes	1	-	1	0
PPEN278197:0:T	yes	1	-	1	0
PPRO298386:2:T	yes	1	2	1	0
PPUT160488:0:T	no	-	0	14	16
PPUT351746:0:T	yes	-	0	12	13
PPUT76869:0:T	no	-	13	2	0
PSP296591:2:T	yes	0	-	0	1
PSP312153:0:T	yes	-	-	1	0
PSP56811:2:T	yes	-	2	1	0
PSTU379731:0:T	yes	-	1717	0	1
PSYR205918:0:T	yes	-	-	4	0
PSYR223283:2:T	yes	-	-	0	10
RAKA293614:0:F	yes	0	-	0	-
RBEL336407:0:T	yes	0	-	0	-
RBEL391896:0:F	no	0	-	0	-
RCAN293613:0:F	yes	0	-	0	-
RCON272944:0:T	no	0	-	0	-
RETL347834:5:T	yes	0	-	0	1
REUT264198:3:T	yes	-	0	217	218
REUT381666:2:T	yes	-	-	0	1
RFEL315456:2:T	yes	0	-	0	-
RFER338969:1:T	yes	2851	0	2851	2850
RLEG216596:4:T	yes	-	0	-	-
RLEG216596:6:T	yes	0	-	0	1
RMAS416276:1:T	yes	0	-	0	-
RMET266264:2:T	yes	-	-	0	1
RPAL316056:0:T	yes	-	-	-	0
RPRO272947:0:T	yes	0	-	0	-
RRIC392021:0:F	no	0	-	0	-
RRIC452659:0:T	yes	0	-	0	-
RSAL288705:0:T	yes	1	-	1	0
RSOL267608:1:T	yes	-	-	0	1
RSP101510:3:F	yes	5949	0	5949	5948
RTYP257363:0:T	no	0	-	0	-
SAGA205921:0:T	no	0	-	-	2
SAGA208435:0:T	no	0	-	-	2
SAGA211110:0:T	yes	0	-	-	2
SALA317655:1:T	yes	0	-	0	-
SARE391037:0:T	yes	-	-	-	0
SAUR158878:1:T	no	1	-	-	0
SAUR158879:1:T	no	1	-	-	0
SAUR196620:0:T	no	1	-	-	0
SAUR273036:0:T	no	1	-	-	0
SAUR282458:0:T	no	1	-	-	0
SAUR282459:0:T	no	1	-	-	0
SAUR359786:1:T	no	1	-	-	0
SAUR359787:1:T	no	1	-	-	0
SAUR367830:3:T	no	1	-	-	0
SAUR418127:0:T	yes	1	-	-	0
SAUR426430:0:T	no	1	-	-	0
SAUR93061:0:F	no	1	-	-	0
SAUR93062:1:T	no	1	-	-	0
SAVE227882:1:F	yes	-	-	1	0
SBAL399599:3:T	yes	1	2	1	0
SBAL402882:1:T	no	1	2	1	0
SBOY300268:1:T	yes	742	0	1	2
SCO:2:F	yes	-	-	-	0
SDEG203122:0:T	yes	-	-	-	0
SDEN318161:0:T	yes	-	2	1	0
SDYS300267:1:T	yes	411	2	1	0
SENT209261:0:T	no	2008	0	1	2
SENT220341:0:T	no	400	2	1	0
SENT295319:0:T	no	1	0	1	2
SENT321314:2:T	no	469	2	1	0
SENT454169:2:T	no	456	2	1	0
SEPI176279:1:T	yes	1	-	1087	0
SEPI176280:0:T	no	1	-	1	0
SERY405948:0:T	yes	-	-	0	1
SFLE198214:0:T	yes	379	2	1	0
SFLE373384:0:T	no	501	2	1	0
SGLO343509:3:T	yes	-	2	1	0
SGOR29390:0:T	yes	1	-	-	0
SHAE279808:0:T	yes	0	-	0	1
SHAL458817:0:T	yes	-	0	1	2
SHIGELLA:0:T	no	387	2	1	0
SLOI323850:0:T	yes	-	0	1	2
SMED366394:3:T	yes	-	0	-	-
SMUT210007:0:T	yes	0	-	-	1
SONE211586:1:T	yes	1	2	1	0
SPEA398579:0:T	no	1	0	1	2
SPNE1313:0:T	yes	1	-	-	0
SPNE171101:0:T	no	1	-	-	0
SPNE487213:0:T	no	0	-	-	1
SPNE487214:0:T	no	1	-	-	0
SPNE488221:0:T	no	1	-	-	0
SPRO399741:1:T	yes	458	2	1	0
SPYO160490:0:T	no	0	-	-	2
SPYO186103:0:T	no	0	-	-	2
SPYO193567:0:T	no	2	-	-	0
SPYO198466:0:T	no	0	-	-	2
SPYO286636:0:T	no	0	-	-	2
SPYO293653:0:T	no	0	-	-	2
SPYO319701:0:T	yes	0	-	-	2
SPYO370551:0:T	no	0	-	-	2
SPYO370552:0:T	no	0	-	-	2
SPYO370553:0:T	no	0	-	-	2
SPYO370554:0:T	yes	0	-	-	2
SSAP342451:2:T	yes	0	-	0	1
SSED425104:0:T	yes	1	2	1	0
SSON300269:1:T	yes	506	2	1	0
SSP1148:0:T	yes	1411	-	1411	0
SSP292414:2:T	yes	0	-	0	1
SSP387093:0:T	yes	26	-	26	0
SSP644076:6:F	yes	1	-	-	0
SSP94122:1:T	yes	1	0	1	2
SSUI391295:0:T	yes	2	-	-	0
SSUI391296:0:T	yes	2	-	-	0
STHE264199:0:T	yes	1	-	-	0
STHE292459:0:T	yes	0	-	0	1
STHE299768:0:T	no	1	-	-	0
STHE322159:2:T	yes	1	-	-	0
STRO369723:0:T	yes	-	-	-	0
STYP99287:1:T	yes	528	2	1	0
TCRU317025:0:T	yes	-	84	1327	0
TDEN243275:0:T	yes	0	-	0	6
TDEN292415:0:T	yes	-	-	0	1
TDEN326298:0:T	yes	0	-	0	2123
TFUS269800:0:T	yes	-	-	-	0
TPAL243276:0:T	yes	0	-	0	-
TROS309801:1:T	yes	-	-	0	1
TTUR377629:0:T	yes	-	-	-	0
TWHI203267:0:T	yes	0	-	0	1
TWHI218496:0:T	no	0	-	0	1
VCHO:0:T	yes	1	0	1	2
VCHO345073:1:T	no	1	0	1	2
VEIS391735:1:T	yes	0	2546	0	1
VFIS312309:2:T	yes	-	0	2	3
VPAR223926:1:T	yes	1	2	1	0
VVUL196600:2:T	yes	1	0	1	2
VVUL216895:1:T	no	1	2	1	0
WPIP80849:0:T	yes	0	-	0	-
WPIP955:0:T	yes	0	-	0	-
WSUC273121:0:T	yes	-	-	0	1221
XAXO190486:0:T	yes	0	-	0	1
XCAM190485:0:T	yes	-	-	0	1
XCAM314565:0:T	no	-	-	0	1
XCAM316273:0:T	no	-	-	2	0
XCAM487884:0:T	no	-	-	0	1
XFAS160492:2:T	no	1	-	1	0
XFAS183190:1:T	yes	1	-	1	0
XFAS405440:0:T	no	1	-	1	0
XORY291331:0:T	no	1	-	1	0
XORY342109:0:T	yes	1	-	1	0
XORY360094:0:T	no	0	-	0	2
YENT393305:1:T	yes	0	455	456	457
YPES187410:5:T	no	0	1752	1751	1750
YPES214092:3:T	no	1376	0	1	2
YPES349746:2:T	no	2164	2	1	0
YPES360102:3:T	yes	1470	0	1	2
YPES377628:2:T	no	0	1654	1653	1652
YPES386656:1:T	no	-	-	-	0
YPES386656:2:T	no	0	865	864	-
YPSE273123:2:T	no	1707	0	1	2
YPSE349747:2:T	no	0	1694	1693	1692
ZMOB264203:0:T	yes	0	-	0	-