CANDIDATE ID: 953

CANDIDATE ID: 953

NUMBER OF GENES: 4
AVERAGE SCORE:    9.9882717e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages




GENE LIST:

- EG12705 (yggN) (b2958)
   Products of gene:
     - EG12705-MONOMER (predicted protein)

- EG12443 (yggL) (b2959)
   Products of gene:
     - EG12443-MONOMER (predicted protein)

- EG11779 (trmI) (b2960)
   Products of gene:
     - EG11779-MONOMER (tRNA (m7G46) methyltransferase)
       Reactions:
        all-tRNAs + S-adenosyl-L-methionine  =  a tRNA containing N7-methylguanine + S-adenosyl-L-homocysteine

- EG10627 (mutY) (b2961)
   Products of gene:
     - EG10627-MONOMER (adenine glycosylase; G.C --> T.A transversions)
       Reactions:
        DNA with G-A mismatch  =  DNA with removed adenine mismatch leaving an AP site



Back to top



ORGANISMS CONTAINING AT LEAST 3 GENES FROM THE GROUP:

Total number of orgs: 101
Effective number of orgs (counting one per cluster within 468 clusters): 57

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317584
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329534
YPES386656 ncbi Yersinia pestis Pestoides F4
YPES377628 ncbi Yersinia pestis Nepal5164
YPES360102 ncbi Yersinia pestis Antiqua4
YPES349746 ncbi Yersinia pestis Angola4
YPES214092 ncbi Yersinia pestis CO923
YPES187410 ncbi Yersinia pestis KIM 104
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80814
VVUL216895 ncbi Vibrio vulnificus CMCP64
VVUL196600 ncbi Vibrio vulnificus YJ0164
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106333
VCHO345073 ncbi Vibrio cholerae O3953
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169613
TCRU317025 ncbi Thiomicrospira crunogena XCL-23
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT24
SSP94122 ncbi Shewanella sp. ANA-33
SSON300269 ncbi Shigella sonnei Ss0464
SSED425104 ncbi Shewanella sediminis HAW-EB33
SPRO399741 ncbi Serratia proteamaculans 5684
SPEA398579 ncbi Shewanella pealeana ATCC 7003454
SONE211586 ncbi Shewanella oneidensis MR-13
SLOI323850 ncbi Shewanella loihica PV-43
SHIGELLA ncbi Shigella flexneri 2a str. 2457T4
SHAL458817 ncbi Shewanella halifaxensis HAW-EB44
SGLO343509 ncbi Sodalis glossinidius morsitans3
SFLE373384 ncbi Shigella flexneri 5 str. 84014
SFLE198214 ncbi Shigella flexneri 2a str. 3014
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4764
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B674
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91504
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT184
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty24
SDYS300267 ncbi Shigella dysenteriae Sd1974
SDEN318161 ncbi Shewanella denitrificans OS2173
SBOY300268 ncbi Shigella boydii Sb2274
SBAL402882 ncbi Shewanella baltica OS1853
SBAL399599 ncbi Shewanella baltica OS1953
RMET266264 ncbi Ralstonia metallidurans CH343
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30003
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a3
PSTU379731 ncbi Pseudomonas stutzeri A15013
PPUT76869 ncbi Pseudomonas putida GB-13
PPUT351746 ncbi Pseudomonas putida F13
PPUT160488 ncbi Pseudomonas putida KT24403
PMUL272843 ncbi Pasteurella multocida multocida Pm703
PMEN399739 ncbi Pseudomonas mendocina ymp3
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO14
PING357804 ncbi Psychromonas ingrahamii 373
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1253
PFLU220664 ncbi Pseudomonas fluorescens Pf-53
PFLU216595 ncbi Pseudomonas fluorescens SBW253
PFLU205922 ncbi Pseudomonas fluorescens Pf0-13
PENT384676 ncbi Pseudomonas entomophila L483
PATL342610 ncbi Pseudoalteromonas atlantica T6c4
PAER208964 ncbi Pseudomonas aeruginosa PAO13
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA143
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E3
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785784
HSOM228400 ncbi Haemophilus somnus 23363
HSOM205914 ncbi Haemophilus somnus 129PT3
HINF71421 ncbi Haemophilus influenzae Rd KW203
HINF374930 ncbi Haemophilus influenzae PittEE3
HINF281310 ncbi Haemophilus influenzae 86-028NP3
HDUC233412 ncbi Haemophilus ducreyi 35000HP3
ESP42895 Enterobacter sp.4
EFER585054 ncbi Escherichia fergusonii ATCC 354694
ECOO157 ncbi Escherichia coli O157:H7 EDL9334
ECOL83334 Escherichia coli O157:H74
ECOL585397 ncbi Escherichia coli ED1a4
ECOL585057 ncbi Escherichia coli IAI394
ECOL585056 ncbi Escherichia coli UMN0264
ECOL585055 ncbi Escherichia coli 559894
ECOL585035 ncbi Escherichia coli S884
ECOL585034 ncbi Escherichia coli IAI14
ECOL481805 ncbi Escherichia coli ATCC 87394
ECOL469008 ncbi Escherichia coli BL21(DE3)4
ECOL439855 ncbi Escherichia coli SMS-3-54
ECOL413997 ncbi Escherichia coli B str. REL6064
ECOL409438 ncbi Escherichia coli SE114
ECOL405955 ncbi Escherichia coli APEC O14
ECOL364106 ncbi Escherichia coli UTI894
ECOL362663 ncbi Escherichia coli 5364
ECOL331111 ncbi Escherichia coli E24377A4
ECOL316407 ncbi Escherichia coli K-12 substr. W31104
ECOL199310 ncbi Escherichia coli CFT0734
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10434
CPSY167879 ncbi Colwellia psychrerythraea 34H3
BVIE269482 ncbi Burkholderia vietnamiensis G43
BSP36773 Burkholderia sp.3
BCEN331272 ncbi Burkholderia cenocepacia HI24243
BCEN331271 ncbi Burkholderia cenocepacia AU 10543
BAMB398577 ncbi Burkholderia ambifaria MC40-63
BAMB339670 ncbi Burkholderia ambifaria AMMD3
ASP76114 ncbi Aromatoleum aromaticum EbN13
ASP232721 ncbi Acidovorax sp. JS423
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4493
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL033
APLE416269 ncbi Actinobacillus pleuropneumoniae L203
AHYD196024 Aeromonas hydrophila dhakensis3
ABAU360910 ncbi Bordetella avium 197N3


Names of the homologs of the genes in the group in each of these orgs
  EG12705   EG12443   EG11779   EG10627   
YPSE349747 YPSIP31758_0823YPSIP31758_0821YPSIP31758_0820YPSIP31758_0819
YPSE273123 YPTB3220YPTB3222YPTB3223YPTB3224
YPES386656 YPDSF_0566YPDSF_0564YPDSF_0563YPDSF_0562
YPES377628 YPN_3146YPN_3148YPN_3149YPN_3150
YPES360102 YPA_0316YPA_0314YPA_0313YPA_0312
YPES349746 YPANGOLA_A0146YPANGOLA_A0148YPANGOLA_A0149YPANGOLA_A0151
YPES214092 YPO0950YPO0951YPO0952
YPES187410 Y3335Y3337Y3338Y3339
YENT393305 YE3439YE3441YE3442YE3443
VVUL216895 VV1_1832VV2_0828VV1_1516VV1_1515
VVUL196600 VV2579VVA1293VV2883VV2884
VPAR223926 VPA0178VP2625VP2626
VCHO345073 VC0395_A1875VC0395_A0005VC0395_A0003
VCHO VC2286VC0453VC0452
TCRU317025 TCR_0789TCR_0119TCR_0120
STYP99287 STM3107STM3108STM3109STM3110
SSP94122 SHEWANA3_1183SHEWANA3_1182SHEWANA3_1181
SSON300269 SSO_3238SSO_3237SSO_3236SSO_3235
SSED425104 SSED_1221SSED_1220SSED_1219
SPRO399741 SPRO_4039SPRO_4041SPRO_4042SPRO_4043
SPEA398579 SPEA_1112SPEA_1110SPEA_1109SPEA_1108
SONE211586 SO_3366SO_3367SO_3368
SLOI323850 SHEW_1125SHEW_1124SHEW_1123
SHIGELLA YGGNYGGLYGGHMUTY
SHAL458817 SHAL_1158SHAL_1156SHAL_1155SHAL_1154
SGLO343509 SG2033SG2034SG2035
SFLE373384 SFV_3016SFV_3017SFV_3018SFV_3019
SFLE198214 AAN44436.1AAN44437.1AAN44438.1AAN44439.1
SENT454169 SEHA_C3347SEHA_C3348SEHA_C3349SEHA_C3350
SENT321314 SCH_3048SCH_3049SCH_3050SCH_3051
SENT295319 SPA2970SPA2971SPA2972SPA2973
SENT220341 STY3262STY3263STY3264STY3265
SENT209261 T3020T3021T3022T3023
SDYS300267 SDY_3114SDY_3113SDY_3112SDY_3111
SDEN318161 SDEN_2696SDEN_2697SDEN_2698
SBOY300268 SBO_3032SBO_3031SBO_3030SBO_3029
SBAL402882 SHEW185_3051SHEW185_3052SHEW185_3053
SBAL399599 SBAL195_3194SBAL195_3195SBAL195_3196
RMET266264 RMET_4349RMET_2704RMET_0295
PSYR223283 PSPTO_2315PSPTO_0435PSPTO_5342
PSYR205918 PSYR_2112PSYR_4739PSYR_4901
PSTU379731 PST_2386PST_3982PST_4097
PPUT76869 PPUTGB1_1611PPUTGB1_5153PPUTGB1_0311
PPUT351746 PPUT_3640PPUT_4976PPUT_0306
PPUT160488 PP_2099PP_5103PP_0286
PMUL272843 PM1316PM1317PM1319
PMEN399739 PMEN_3007PMEN_4166PMEN_4259
PLUM243265 PLU1173PLU1171PLU1170PLU1169
PING357804 PING_3653PING_0377PING_0376
PHAL326442 PSHAA0060PSHAA0553PSHAA0554
PFLU220664 PFL_1881PFL_5849PFL_0358
PFLU216595 PFLU4598PFLU5772PFLU0323
PFLU205922 PFL_1791PFL_5329PFL_0320
PENT384676 PSEEN3769PSEEN0308PSEEN5199
PATL342610 PATL_4058PATL_1954PATL_0078PATL_0076
PAER208964 PA3046PA0382PA5147
PAER208963 PA14_24700PA14_05000PA14_67990
MSUC221988 MS0319MS0318MS0317
KPNE272620 GKPORF_B2735GKPORF_B2736GKPORF_B2737GKPORF_B2738
HSOM228400 HSM_1822HSM_1828HSM_1829
HSOM205914 HS_1661HS_1666HS_1667
HINF71421 HI_0341HI_0340HI_0759
HINF374930 CGSHIEE_01295CGSHIEE_01300CGSHIEE_08300
HINF281310 NTHI0460NTHI0459NTHI0919
HDUC233412 HD_0776HD_0775HD_2004
ESP42895 ENT638_3363ENT638_3364ENT638_3365ENT638_3366
EFER585054 EFER_2900EFER_2901EFER_2902EFER_2903
ECOO157 YGGNYGGLYGGHMUTY
ECOL83334 ECS3834ECS3835ECS3836ECS3837
ECOL585397 ECED1_3421ECED1_3422ECED1_3423ECED1_3424
ECOL585057 ECIAI39_3382ECIAI39_3383ECIAI39_3384ECIAI39_3385
ECOL585056 ECUMN_3313ECUMN_3314ECUMN_3315ECUMN_3316
ECOL585055 EC55989_3251EC55989_3252EC55989_3253EC55989_3254
ECOL585035 ECS88_3240ECS88_3241ECS88_3242ECS88_3244
ECOL585034 ECIAI1_3091ECIAI1_3092ECIAI1_3093ECIAI1_3094
ECOL481805 ECOLC_0756ECOLC_0755ECOLC_0754ECOLC_0753
ECOL469008 ECBD_0782ECBD_0780ECBD_0779ECBD_0778
ECOL439855 ECSMS35_3100ECSMS35_3102ECSMS35_3103ECSMS35_3104
ECOL413997 ECB_02788ECB_02789ECB_02790ECB_02791
ECOL409438 ECSE_3226ECSE_3228ECSE_3229ECSE_3230
ECOL405955 APECO1_3563APECO1_3562APECO1_3561APECO1_3560
ECOL364106 UTI89_C3347UTI89_C3349UTI89_C3350UTI89_C3351
ECOL362663 ECP_2952ECP_2953ECP_2954ECP_2955
ECOL331111 ECE24377A_3302ECE24377A_3304ECE24377A_3305ECE24377A_3307
ECOL316407 ECK2953:JW2925:B2958ECK2954:JW2926:B2959ECK2955:JW2927:B2960ECK2956:JW2928:B2961
ECOL199310 C3544C3546C3547C3548
ECAR218491 ECA0979ECA0978ECA0977ECA0976
CPSY167879 CPS_4147CPS_4146CPS_4148
BVIE269482 BCEP1808_2391BCEP1808_0849BCEP1808_2902
BSP36773 BCEP18194_A5643BCEP18194_A4022BCEP18194_A6127
BCEN331272 BCEN2424_2302BCEN2424_0918BCEN2424_2797
BCEN331271 BCEN_1690BCEN_0439BCEN_2183
BAMB398577 BAMMC406_2219BAMMC406_0806BAMMC406_2715
BAMB339670 BAMB_2340BAMB_0795BAMB_2857
ASP76114 P1B135C1A43EBA2699
ASP232721 AJS_2000AJS_1981AJS_0901
ASAL382245 ASA_0836ASA_0835ASA_0513
APLE434271 APJL_1400APJL_1401APJL_1775
APLE416269 APL_1382APL_1383APL_1739
AHYD196024 AHA_3481AHA_3482AHA_3787
ABAU360910 BAV0359BAV0455BAV3063


Organism features enriched in list (features available for 97 out of the 101 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.0013600692
Arrangment:Pairs 0.002021929112
Arrangment:Singles 0.000243363286
Disease:Bubonic_plague 0.000018666
Disease:Dysentery 0.000018666
Disease:Gastroenteritis 1.896e-61013
Disease:chronic_bronchitis 0.004487433
Endospores:No 0.005758325211
GC_Content_Range4:0-40 5.971e-137213
GC_Content_Range4:40-60 1.217e-1370224
GC_Content_Range7:30-40 2.029e-87166
GC_Content_Range7:40-50 0.000410732117
GC_Content_Range7:50-60 5.433e-838107
Genome_Size_Range5:0-2 5.288e-104155
Genome_Size_Range5:2-4 1.193e-99197
Genome_Size_Range5:4-6 9.143e-1969184
Genome_Size_Range5:6-10 0.00348741547
Genome_Size_Range9:1-2 1.440e-74128
Genome_Size_Range9:2-3 0.00007427120
Genome_Size_Range9:3-4 0.0000438277
Genome_Size_Range9:4-5 1.081e-73596
Genome_Size_Range9:5-6 3.147e-83488
Genome_Size_Range9:6-8 0.00109871438
Gram_Stain:Gram_Neg 8.578e-2193333
Habitat:Multiple 0.002478241178
Habitat:Specialized 0.0098352353
Motility:No 1.260e-94151
Motility:Yes 6.373e-970267
Optimal_temp.:35-37 0.0095306613
Oxygen_Req:Aerobic 0.000120516185
Oxygen_Req:Anaerobic 3.021e-63102
Oxygen_Req:Facultative 1.316e-1872201
Pathogenic_in:Human 0.000012954213
Pathogenic_in:No 2.032e-618226
Shape:Rod 1.614e-1590347
Temp._range:Mesophilic 0.006097087473
Temp._range:Psychrophilic 0.007342659



Back to top



ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 296
Effective number of orgs (counting one per cluster within 468 clusters): 244

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
WPIP955 Wolbachia pipientis1
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB40
TSP28240 Thermotoga sp.1
TSP1755 Thermoanaerobacter sp.0
TROS309801 ncbi Thermomicrobium roseum DSM 51591
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332230
TPET390874 ncbi Thermotoga petrophila RKU-11
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols1
TMAR243274 ncbi Thermotoga maritima MSB81
TLET416591 ncbi Thermotoga lettingae TMO1
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TFUS269800 ncbi Thermobifida fusca YX1
TERY203124 ncbi Trichodesmium erythraeum IMS1011
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12511
TDEN243275 ncbi Treponema denticola ATCC 354051
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen0
STRO369723 ncbi Salinispora tropica CNB-4401
STOK273063 ncbi Sulfolobus tokodaii 70
STHE292459 ncbi Symbiobacterium thermophilum IAM 148631
SSUI391296 ncbi Streptococcus suis 98HAH331
SSUI391295 ncbi Streptococcus suis 05ZYH331
SSP1148 ncbi Synechocystis sp. PCC 68031
SSP1131 Synechococcus sp. CC96051
SSOL273057 ncbi Sulfolobus solfataricus P20
SRUB309807 ncbi Salinibacter ruber DSM 138551
SPYO370554 ncbi Streptococcus pyogenes MGAS107501
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370552 ncbi Streptococcus pyogenes MGAS102701
SPYO370551 ncbi Streptococcus pyogenes MGAS94291
SPYO319701 ncbi Streptococcus pyogenes MGAS61801
SPYO293653 ncbi Streptococcus pyogenes MGAS50051
SPYO286636 ncbi Streptococcus pyogenes MGAS103941
SPYO198466 ncbi Streptococcus pyogenes MGAS3151
SPYO193567 ncbi Streptococcus pyogenes SSI-11
SPYO186103 ncbi Streptococcus pyogenes MGAS82321
SPYO160490 ncbi Streptococcus pyogenes M1 GAS1
SMAR399550 ncbi Staphylothermus marinus F10
SGOR29390 Streptococcus gordonii Challis1
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB1
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23381
SCO ncbi Streptomyces coelicolor A3(2)1
SAVE227882 ncbi Streptomyces avermitilis MA-46801
SARE391037 ncbi Salinispora arenicola CNS-2051
SACI56780 ncbi Syntrophus aciditrophicus SB1
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99411
RTYP257363 ncbi Rickettsia typhi Wilmington1
RSP357808 ncbi Roseiflexus sp. RS-11
RSP101510 ncbi Rhodococcus jostii RHA11
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332091
RRIC452659 ncbi Rickettsia rickettsii Iowa1
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith1
RPRO272947 ncbi Rickettsia prowazekii Madrid E1
RMAS416276 ncbi Rickettsia massiliae MTU51
RFEL315456 ncbi Rickettsia felis URRWXCal21
RCON272944 ncbi Rickettsia conorii Malish 71
RCAS383372 ncbi Roseiflexus castenholzii DSM 139411
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3891
RBEL336407 ncbi Rickettsia bellii RML369-C1
RALB246199 Ruminococcus albus 80
RAKA293614 ncbi Rickettsia akari Hartford1
PTOR263820 ncbi Picrophilus torridus DSM 97900
PTHE370438 ncbi Pelotomaculum thermopropionicum SI0
PRUM264731 ncbi Prevotella ruminicola 231
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257451
PMOB403833 ncbi Petrotoga mobilis SJ951
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74547 ncbi Prochlorococcus marinus MIT 93131
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR59920 ncbi Prochlorococcus marinus NATL2A1
PMAR167555 ncbi Prochlorococcus marinus NATL1A1
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR146891 ncbi Prochlorococcus marinus AS96010
PLUT319225 ncbi Chlorobium luteolum DSM 2730
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 171
PHOR70601 ncbi Pyrococcus horikoshii OT30
PGIN242619 ncbi Porphyromonas gingivalis W831
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PDIS435591 ncbi Parabacteroides distasonis ATCC 85031
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PAER178306 ncbi Pyrobaculum aerophilum IM20
PACN267747 ncbi Propionibacterium acnes KPA1712021
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
NSP103690 ncbi Nostoc sp. PCC 71201
NSEN222891 ncbi Neorickettsia sennetsu Miyayama1
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
NFAR247156 ncbi Nocardia farcinica IFM 101521
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-11
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra1
MTUB336982 ncbi Mycobacterium tuberculosis F111
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE264732 ncbi Moorella thermoacetica ATCC 390730
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MTBRV ncbi Mycobacterium tuberculosis H37Rv1
MTBCDC ncbi Mycobacterium tuberculosis CDC15511
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSP189918 ncbi Mycobacterium sp. KMS1
MSP164757 ncbi Mycobacterium sp. JLS1
MSP164756 ncbi Mycobacterium sp. MCS1
MSME246196 ncbi Mycobacterium smegmatis MC2 1551
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K1
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MLEP272631 ncbi Mycobacterium leprae TN1
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74481
MHYO262719 ncbi Mycoplasma hyopneumoniae J1
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK1
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P21
MBOV233413 ncbi Mycobacterium bovis AF2122/971
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MAVI243243 ncbi Mycobacterium avium 1041
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAER449447 ncbi Microcystis aeruginosa NIES-8431
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
LSAK314315 ncbi Lactobacillus sakei sakei 23K1
LREU557436 ncbi Lactobacillus reuteri DSM 200161
LPLA220668 ncbi Lactobacillus plantarum WCFS11
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82931
LJOH257314 ncbi Lactobacillus johnsonii NCC 5331
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-001
LHEL405566 ncbi Lactobacillus helveticus DPC 45711
LGAS324831 ncbi Lactobacillus gasseri ATCC 333231
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118421
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3651
LCAS321967 ncbi Lactobacillus casei ATCC 3341
LBRE387344 ncbi Lactobacillus brevis ATCC 3671
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)1
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)1
LACI272621 ncbi Lactobacillus acidophilus NCFM1
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSAL478009 ncbi Halobacterium salinarum R10
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMOD498761 ncbi Heliobacterium modesticaldum Ice10
HMAR272569 ncbi Haloarcula marismortui ATCC 430490
HHEP235279 ncbi Helicobacter hepaticus ATCC 514491
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237791
HACI382638 ncbi Helicobacter acinonychis Sheeba1
GVIO251221 ncbi Gloeobacter violaceus PCC 74211
GURA351605 ncbi Geobacter uraniireducens Rf41
GSUL243231 ncbi Geobacter sulfurreducens PCA1
GOXY290633 ncbi Gluconobacter oxydans 621H1
GMET269799 ncbi Geobacter metallireducens GS-151
GBET391165 ncbi Granulibacter bethesdensis CGDNIH11
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-001
FTUL418136 ncbi Francisella tularensis tularensis WY96-34180
FTUL401614 ncbi Francisella novicida U1121
FTUL393115 ncbi Francisella tularensis tularensis FSC1980
FTUL393011 ncbi Francisella tularensis holarctica OSU181
FTUL351581 Francisella tularensis holarctica FSC2000
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S851
FSP1855 Frankia sp. EAN1pec0
FSP106370 ncbi Frankia sp. CcI31
FRANT ncbi Francisella tularensis tularensis SCHU S40
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250171
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255860
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B11
FMAG334413 ncbi Finegoldia magna ATCC 293280
FJOH376686 ncbi Flavobacterium johnsoniae UW1011
FALN326424 ncbi Frankia alni ACN14a0
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
EFAE226185 ncbi Enterococcus faecalis V5831
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough1
DSP255470 ncbi Dehalococcoides sp. CBDB10
DSP216389 ncbi Dehalococcoides sp. BAV10
DRED349161 ncbi Desulfotomaculum reducens MI-10
DPSY177439 ncbi Desulfotalea psychrophila LSv541
DOLE96561 ncbi Desulfococcus oleovorans Hxd31
DHAF138119 ncbi Desulfitobacterium hafniense Y511
DETH243164 ncbi Dehalococcoides ethenogenes 1950
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G201
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA1
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis1
CTRA471472 ncbi Chlamydia trachomatis 434/Bu1
CTET212717 ncbi Clostridium tetani E880
CTEP194439 ncbi Chlorobium tepidum TLS0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)1
CPNE182082 ncbi Chlamydophila pneumoniae TW-1831
CPNE138677 ncbi Chlamydophila pneumoniae J1381
CPNE115713 ncbi Chlamydophila pneumoniae CWL0291
CPNE115711 ncbi Chlamydophila pneumoniae AR391
CPHY357809 ncbi Clostridium phytofermentans ISDg1
CPER289380 ncbi Clostridium perfringens SM1010
CPER195103 ncbi Clostridium perfringens ATCC 131240
CPER195102 ncbi Clostridium perfringens 130
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10621
CNOV386415 ncbi Clostridium novyi NT0
CMUR243161 ncbi Chlamydia muridarum Nigg1
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3821
CMIC31964 ncbi Clavibacter michiganensis sepedonicus1
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CKLU431943 ncbi Clostridium kluyveri DSM 5550
CJEJ407148 ncbi Campylobacter jejuni jejuni 811161
CJEJ360109 ncbi Campylobacter jejuni doylei 269.971
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1761
CJEJ195099 ncbi Campylobacter jejuni RM12211
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111681
CJEI306537 ncbi Corynebacterium jeikeium K4111
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29010
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334061
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3811
CFET360106 ncbi Campylobacter fetus fetus 82-400
CEFF196164 ncbi Corynebacterium efficiens YS-3141
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131291
CDIF272563 ncbi Clostridium difficile 6300
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C0
CCUR360105 ncbi Campylobacter curvus 525.921
CCON360104 ncbi Campylobacter concisus 138261
CCHL340177 ncbi Chlorobium chlorochromatii CaD30
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1111
CBUR360115 ncbi Coxiella burnetii RSA 3311
CBUR227377 ncbi Coxiella burnetii RSA 4931
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto0
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6570
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B0
CBOT498213 ncbi Clostridium botulinum B1 str. Okra0
CBOT441772 ncbi Clostridium botulinum F str. Langeland0
CBOT441771 ncbi Clostridium botulinum A str. Hall0
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193970
CBOT36826 Clostridium botulinum A0
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN1
CBLO203907 ncbi Candidatus Blochmannia floridanus1
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80520
CACE272562 ncbi Clostridium acetobutylicum ATCC 8240
BXEN266265 ncbi Burkholderia xenovorans LB4000
BTUR314724 ncbi Borrelia turicatae 91E1350
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54821
BLIC279010 ncbi Bacillus licheniformis ATCC 145801
BHER314723 ncbi Borrelia hermsii DAH0
BGAR290434 ncbi Borrelia garinii PBi0
BFRA295405 ncbi Bacteroides fragilis YCH461
BFRA272559 ncbi Bacteroides fragilis NCTC 93431
BCIC186490 Candidatus Baumannia cicadellinicola0
BBUR224326 ncbi Borrelia burgdorferi B310
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1001
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)1
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AVAR240292 ncbi Anabaena variabilis ATCC 294131
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP1667 Arthrobacter sp.1
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K10
AORE350688 ncbi Alkaliphilus oremlandii OhILAs1
AMET293826 ncbi Alkaliphilus metalliredigens QYMF1
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A1
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
ACEL351607 ncbi Acidothermus cellulolyticus 11B0
ABUT367737 ncbi Arcobacter butzleri RM40181
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3451
AAEO224324 ncbi Aquifex aeolicus VF51


Names of the homologs of the genes in the group in each of these orgs
  EG12705   EG12443   EG11779   EG10627   
WPIP955 WD_1091
WPIP80849
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496
TWHI203267
TVOL273116
TTEN273068
TSP28240 TRQ2_0002
TSP1755
TROS309801 TRD_A0868
TPSE340099
TPET390874 TPET_0002
TPEN368408
TPAL243276 TP_0464
TMAR243274 TM_0925
TLET416591 TLET_0003
TKOD69014
TFUS269800 TFU_2875
TERY203124 TERY_0871
TDEN326298 TMDEN_0785
TDEN243275 TDE_1130
TACI273075
SWOL335541
STRO369723 STROP_4274
STOK273063
STHE292459 STH1727
SSUI391296 SSU98_1068
SSUI391295 SSU05_1052
SSP1148 SLL1300
SSP1131 SYNCC9605_0099
SSOL273057
SRUB309807 SRU_2119
SPYO370554 MGAS10750_SPY1616
SPYO370553
SPYO370552 MGAS10270_SPY1624
SPYO370551 MGAS9429_SPY1562
SPYO319701 M28_SPY1544
SPYO293653 M5005_SPY1557
SPYO286636 M6_SPY1569
SPYO198466 SPYM3_1584
SPYO193567 SPS0283
SPYO186103 SPYM18_1899
SPYO160490 SPY1833
SMAR399550
SGOR29390 SGO_1218
SFUM335543 SFUM_2733
SERY405948 SACE_7256
SCO SCO4111
SAVE227882 SAV4115
SARE391037 SARE_1717
SACI56780 SYN_02088
SACI330779
RXYL266117 RXYL_2026
RTYP257363 RT0836
RSP357808 ROSERS_3189
RSP101510 RHA1_RO05176
RSAL288705 RSAL33209_1889
RRIC452659 RRIOWA_1540
RRIC392021 A1G_07200
RPRO272947 RP847
RMAS416276 RMA_1334
RFEL315456 RF_1344
RCON272944 RC1314
RCAS383372 RCAS_2917
RCAN293613
RBEL391896 A1I_00915
RBEL336407 RBE_1243
RALB246199
RAKA293614 A1C_06570
PTOR263820
PTHE370438
PRUM264731 GFRORF2000
PPEN278197 PEPE_0682
PMOB403833 PMOB_1385
PMAR93060
PMAR74547 PMT0135
PMAR74546
PMAR59920 PMN2A_1205
PMAR167555 NATL1_20801
PMAR167546
PMAR167542
PMAR167540
PMAR146891
PLUT319225
PISL384616
PINT246198 PIN_A2146
PHOR70601
PGIN242619 PG_1378
PFUR186497
PDIS435591 BDI_1994
PAST100379
PARS340102
PAER178306
PACN267747 PPA1808
PABY272844
OTSU357244
NSP103690 ALR1845
NSEN222891 NSE_0922
NPHA348780
NFAR247156 NFA54840
MVAN350058 MVAN_0198
MTUB419947 MRA_0216
MTUB336982 TBFG_10210
MTHE349307
MTHE264732
MTHE187420
MTBRV RV0208C
MTBCDC MT0218
MSYN262723
MSTA339860
MSP189918 MKMS_0182
MSP164757 MJLS_0162
MSP164756 MMCS_0173
MSME246196 MSMEG_0252
MSED399549
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748 MMOB4960
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR368407
MMAR267377
MLEP272631 ML2622
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722 MHP7448_0465
MHYO262719 MHJ_0462
MHUN323259
MGIL350054 MFLV_0454
MGEN243273
MFLO265311
MCAP340047
MBUR259564
MBOV410289 BCG_0245C
MBOV233413 MB0214C
MBAR269797
MAVI243243 MAV_4966
MART243272
MAER449447 MAE_46310
MAEO419665
MACE188937
LSAK314315 LSA1476
LREU557436 LREU_1260
LPLA220668 LP_3349
LMES203120 LEUM_1861
LJOH257314 LJ_1667
LINT363253 LI0165
LHEL405566 LHV_1653
LGAS324831 LGAS_1441
LDEL390333 LDB1525
LDEL321956 LBUL_1416
LCAS321967 LSEI_0689
LBRE387344 LVIS_1945
LBIF456481 LEPBI_I1287
LBIF355278 LBF_1233
LACI272621 LBA1582
IHOS453591
HWAL362976
HSP64091
HSAL478009
HMUK485914
HMOD498761
HMAR272569
HHEP235279 HH_1242
HBUT415426
HAUR316274 HAUR_4400
HACI382638 HAC_0671
GVIO251221 GLL0866
GURA351605 GURA_0955
GSUL243231 GSU_0521
GOXY290633 GOX1084
GMET269799 GMET_3034
GBET391165 GBCGDNIH1_2398
FTUL458234 FTA_0661
FTUL418136
FTUL401614 FTN_1400
FTUL393115
FTUL393011 FTH_0631
FTUL351581
FSUC59374 FSU2780
FSP1855
FSP106370 FRANCCI3_4260
FRANT
FPHI484022 FPHI_1288
FNUC190304
FNOD381764 FNOD_1013
FMAG334413
FJOH376686 FJOH_1535
FALN326424
ERUM302409
ERUM254945
EFAE226185 EF_2704
ECHA205920
ECAN269484
DVUL882 DVU_0282
DSP255470
DSP216389
DRED349161
DPSY177439 DP2463
DOLE96561 DOLE_1519
DHAF138119 DSY3260
DETH243164
DDES207559 DDE_0212
CVES412965 COSY_0893
CTRA471473 CTLON_0358
CTRA471472 CTL0362
CTET212717
CTEP194439
CSUL444179
CRUT413404 RMAG_0997
CPNE182082 CPB0415
CPNE138677 CPJ0402
CPNE115713 CPN0402
CPNE115711 CP_0353
CPHY357809 CPHY_3362
CPER289380
CPER195103
CPER195102
CPEL335992 SAR11_0111
CNOV386415
CMUR243161 TC_0383
CMIC443906 CMM_2147
CMIC31964 CMS1841
CMET456442
CMAQ397948
CKOR374847
CKLU431943
CJEJ407148 C8J_1521
CJEJ360109 JJD26997_1974
CJEJ354242 CJJ81176_1607
CJEJ195099 CJE_1792
CJEJ192222 CJ1620C
CJEI306537 JK0149
CHYD246194
CHUT269798 CHU_3686
CHOM360107 CHAB381_1287
CFET360106
CEFF196164 CE2696
CDIP257309 DIP2181
CDIF272563
CDES477974
CCUR360105 CCV52592_0477
CCON360104 CCC13826_0506
CCHL340177
CBUR434922 COXBU7E912_1133
CBUR360115 COXBURSA331_A1003
CBUR227377 CBU_0940
CBOT536232
CBOT515621
CBOT508765
CBOT498213
CBOT441772
CBOT441771
CBOT441770
CBOT36826
CBLO291272 BPEN_256
CBLO203907 BFL249
CBEI290402
CACE272562
BXEN266265
BTUR314724
BTHE226186 BT_1498
BLIC279010 BL03038
BHER314723
BGAR290434
BFRA295405 BF1554
BFRA272559 BF1569
BCIC186490
BBUR224326
BBAC264462 BD3437
BAPH372461 BCC_362
BAFZ390236
AYEL322098
AVAR240292 AVA_4784
AURANTIMONAS
ASP1667 ARTH_3782
APHA212042
APER272557
AORE350688 CLOS_2291
AMET293826 AMET_4327
AMAR234826
ALAI441768 ACL_0709
AFUL224325
ACEL351607
ABUT367737 ABU_1001
ABAC204669 ACID345_0804
AAEO224324 AQ_065


Organism features enriched in list (features available for 278 out of the 296 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Clusters 0.0002165117
Arrangment:Filaments 0.00055761010
Arrangment:Pairs 0.000094136112
Disease:Pneumonia 0.0042930112
Disease:Wide_range_of_infections 0.00026081111
Endospores:No 2.786e-8132211
GC_Content_Range4:0-40 1.446e-9136213
GC_Content_Range4:40-60 0.006275594224
GC_Content_Range4:60-100 8.269e-647145
GC_Content_Range7:0-30 1.541e-134547
GC_Content_Range7:30-40 0.006909891166
GC_Content_Range7:50-60 7.172e-631107
GC_Content_Range7:60-70 1.289e-738134
Genome_Size_Range5:0-2 2.356e-29132155
Genome_Size_Range5:4-6 1.348e-1741184
Genome_Size_Range9:0-1 5.284e-72527
Genome_Size_Range9:1-2 2.741e-21107128
Genome_Size_Range9:4-5 4.282e-72496
Genome_Size_Range9:5-6 1.924e-91788
Genome_Size_Range9:6-8 0.00756661138
Gram_Stain:Gram_Neg 7.661e-15113333
Gram_Stain:Gram_Pos 0.000164390150
Habitat:Specialized 0.00036763753
Motility:No 2.443e-696151
Motility:Yes 4.841e-993267
Optimal_temp.:25-30 0.0000630119
Optimal_temp.:37 0.001321564106
Oxygen_Req:Aerobic 0.002873274185
Oxygen_Req:Anaerobic 4.544e-2291102
Oxygen_Req:Facultative 4.512e-1257201
Pathogenic_in:Animal 0.00477832266
Salinity:Non-halophilic 0.004178562106
Shape:Irregular_coccus 2.617e-61717
Shape:Rod 3.448e-10129347
Shape:Sphere 0.00085051619
Temp._range:Hyperthermophilic 2.439e-82323
Temp._range:Mesophilic 0.0000155206473
Temp._range:Thermophilic 0.00543882435



Back to top



ORGANISMS ENRICHED FOR GROUP:




Back to top



ORGANISMS DEPLETED FOR GROUP:




Back to top



PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
AST-PWY (arginine degradation II (AST pathway))120740.6024
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)218990.5813
PWY-5861 (superpathway of demethylmenaquinone-8 biosynthesis)50430.5593
GALACTITOLCAT-PWY (galactitol degradation)73510.5303
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)176830.5269
PWY-46 (putrescine biosynthesis III)138720.5205
ECASYN-PWY (enterobacterial common antigen biosynthesis)191850.5104
GLUTDEG-PWY (glutamate degradation II)194850.5036
GLYCOCAT-PWY (glycogen degradation I)246960.5000
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)195840.4920
PWY0-1315 (L-lactaldehyde degradation (anaerobic))45360.4829
PWY-5755 (4-hydroxybenzoate biosynthesis II (bacteria and fungi))81490.4645
GLUCONSUPER-PWY (D-gluconate degradation)229880.4595
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)249910.4502
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)249910.4502
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)225860.4490
PWY0-1182 (trehalose degradation II (trehalase))70430.4365
PWY0-901 (selenocysteine biosynthesis I (bacteria))230850.4306
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))300980.4303
PWY-6196 (serine racemization)102530.4292
PWY-5148 (acyl-CoA hydrolysis)227840.4271
HEXITOLDEGSUPER-PWY (superpathway of hexitol degradation)37290.4238
LPSSYN-PWY (superpathway of lipopolysaccharide biosynthesis)91490.4223
GLUCARDEG-PWY (D-glucarate degradation I)152660.4194
LACTOSEUTIL-PWY (lactose degradation II)53350.4122
PHOSLIPSYN-PWY (phospholipid biosynthesis I)290940.4102
PWY0-1319 (CDP-diacylglycerol biosynthesis II)296950.4100
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))291940.4087
GLUTAMINDEG-PWY (glutamine degradation I)191740.4065
PWY-5386 (methylglyoxal degradation I)305960.4056
PWY-1269 (CMP-KDO biosynthesis I)325990.4038
4AMINOBUTMETAB-PWY (superpathway of 4-aminobutyrate degradation)212780.4010
LYXMET-PWY (L-lyxose degradation)87460.4008
PWY0-1355 (formate to trimethylamine N-oxide electron transfer)31250.4001
PWY-5921 (L-glutamine biosynthesis II (tRNA-dependent))40119-.4184



Back to top



PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG12443   EG11779   EG10627   
EG127050.9987160.9986220.998509
EG124430.999230.998839
EG117790.999047
EG10627



Back to top



PAIRWISE BLAST SCORES:

  EG12705   EG12443   EG11779   EG10627   
EG127050.0f0---
EG12443-0.0f0--
EG11779--0.0f0-
EG10627---0.0f0



Back to top



PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.



Back to top



GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10627 EG11779 EG12443 EG12705 (centered at EG11779)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  EG12705   EG12443   EG11779   EG10627   
55/62399/623406/623410/623
AAEO224324:0:Tyes--0-
AAUR290340:2:Tyes--33020
AAVE397945:0:Tyes--0555
ABAC204669:0:Tyes---0
ABAU360910:0:Tyes-0952712
ABOR393595:0:Tyes--2900
ABUT367737:0:Tyes--0-
ACAU438753:0:Tyes--0444
ACRY349163:8:Tyes--0444
ADEH290397:0:Tyes--18530
AEHR187272:0:Tyes--02643
AFER243159:0:Tyes--26240
AHYD196024:0:Tyes-01280
ALAI441768:0:Tyes---0
AMAR329726:9:Tyes--01971
AMET293826:0:Tyes---0
ANAE240017:0:Tyes--02070
AORE350688:0:Tyes---0
APLE416269:0:Tyes-01377
APLE434271:0:Tno-01390
ASAL382245:5:Tyes-3173160
ASP1667:3:Tyes--0-
ASP232721:2:Tyes-105310340
ASP62928:0:Tyes--1560
ASP62977:0:Tyes--02119
ASP76114:0:Tyes-0--
ASP76114:2:Tyes--0226
AVAR240292:3:Tyes--0-
BABO262698:1:Tno--15600
BAMB339670:3:Tno-159202114
BAMB398577:3:Tno-143801937
BAMY326423:0:Tyes--18280
BANT260799:0:Tno--41130
BANT261594:2:Tno--40760
BANT568206:2:Tyes--8820
BANT592021:2:Tno--42860
BAPH198804:0:Tyes--01
BAPH372461:0:Tyes---0
BBAC264462:0:Tyes---0
BBAC360095:0:Tyes--7690
BBRO257310:0:Tyes--03983
BCAN483179:1:Tno--16480
BCEN331271:2:Tno-127401770
BCEN331272:3:Tyes-138201876
BCER226900:1:Tyes--41070
BCER288681:0:Tno--40330
BCER315749:1:Tyes--27790
BCER405917:1:Tyes--40390
BCER572264:1:Tno--41860
BCLA66692:0:Tyes--14990
BFRA272559:1:Tyes---0
BFRA295405:0:Tno---0
BHAL272558:0:Tyes--23680
BHEN283166:0:Tyes--0223
BJAP224911:0:Fyes--01725
BLIC279010:0:Tyes---0
BLON206672:0:Tyes--4690
BMAL243160:1:Tno--0865
BMAL320388:1:Tno--6550
BMAL320389:1:Tyes--0886
BMEL224914:1:Tno--5320
BMEL359391:1:Tno--15080
BOVI236:1:Tyes--14090
BPAR257311:0:Tno--03323
BPER257313:0:Tyes--0138
BPET94624:0:Tyes--38690
BPSE272560:1:Tyes--21300
BPSE320372:1:Tno--24570
BPSE320373:1:Tno--23820
BPUM315750:0:Tyes--18260
BQUI283165:0:Tyes--0142
BSP107806:2:Tyes--01
BSP36773:2:Tyes-166002148
BSP376:0:Tyes--01845
BSUB:0:Tyes--22420
BSUI204722:1:Tyes--16130
BSUI470137:1:Tno--14340
BTHA271848:1:Tno--10230
BTHE226186:0:Tyes---0
BTHU281309:1:Tno--39610
BTHU412694:1:Tno--36680
BTRI382640:1:Tyes--0384
BVIE269482:7:Tyes-152902032
BWEI315730:4:Tyes--40290
CABO218497:0:Tyes--3620
CAULO:0:Tyes--0330
CBLO203907:0:Tyes---0
CBLO291272:0:Tno---0
CBUR227377:1:Tyes---0
CBUR360115:1:Tno---0
CBUR434922:2:Tno---0
CCAV227941:1:Tyes--3790
CCON360104:2:Tyes--0-
CCUR360105:0:Tyes--0-
CDIP257309:0:Tyes--0-
CEFF196164:0:Fyes--0-
CFEL264202:1:Tyes--0393
CGLU196627:0:Tyes--1970
CHOM360107:1:Tyes--0-
CHUT269798:0:Tyes---0
CJAP155077:0:Tyes--29000
CJEI306537:0:Tyes--0-
CJEJ192222:0:Tyes---0
CJEJ195099:0:Tno---0
CJEJ354242:2:Tyes---0
CJEJ360109:0:Tyes---0
CJEJ407148:0:Tno---0
CMIC31964:2:Tyes---0
CMIC443906:2:Tyes---0
CMUR243161:1:Tyes---0
CPEL335992:0:Tyes---0
CPHY357809:0:Tyes---0
CPNE115711:1:Tyes---0
CPNE115713:0:Tno---0
CPNE138677:0:Tno---0
CPNE182082:0:Tno---0
CPRO264201:0:Fyes--12240
CPSY167879:0:Tyes-102
CRUT413404:0:Tyes--0-
CSAL290398:0:Tyes--26700
CSP501479:8:Fyes--22260
CSP78:2:Tyes--04375
CTRA471472:0:Tyes---0
CTRA471473:0:Tno---0
CVES412965:0:Tyes--0-
CVIO243365:0:Tyes--840
DARO159087:0:Tyes--38310
DDES207559:0:Tyes---0
DGEO319795:1:Tyes--20610
DHAF138119:0:Tyes---0
DNOD246195:0:Tyes--5690
DOLE96561:0:Tyes---0
DPSY177439:2:Tyes---0
DRAD243230:3:Tyes--0596
DSHI398580:5:Tyes--10130
DVUL882:1:Tyes---0
ECAR218491:0:Tyes3210
ECOL199310:0:Tno0234
ECOL316407:0:Tno0123
ECOL331111:6:Tno0234
ECOL362663:0:Tno0123
ECOL364106:1:Tno0234
ECOL405955:2:Tyes0123
ECOL409438:6:Tyes0234
ECOL413997:0:Tno0123
ECOL439855:4:Tno0234
ECOL469008:0:Tno4210
ECOL481805:0:Tno3210
ECOL585034:0:Tno0123
ECOL585035:0:Tno0123
ECOL585055:0:Tno0123
ECOL585056:2:Tno0123
ECOL585057:0:Tno0123
ECOL585397:0:Tno0123
ECOL83334:0:Tno0123
ECOLI:0:Tno0123
ECOO157:0:Tno0123
EFAE226185:3:Tyes---0
EFER585054:1:Tyes0123
ELIT314225:0:Tyes--11420
ESP42895:1:Tyes0123
FJOH376686:0:Tyes---0
FNOD381764:0:Tyes--0-
FPHI484022:1:Tyes--0-
FSP106370:0:Tyes---0
FSUC59374:0:Tyes---0
FTUL393011:0:Tno--0-
FTUL401614:0:Tyes--0-
FTUL458234:0:Tno--0-
GBET391165:0:Tyes--0-
GFOR411154:0:Tyes--03456
GKAU235909:1:Tyes--24050
GMET269799:1:Tyes--0-
GOXY290633:5:Tyes---0
GSUL243231:0:Tyes--0-
GTHE420246:1:Tyes--22230
GURA351605:0:Tyes--0-
GVIO251221:0:Tyes---0
HACI382638:1:Tyes--0-
HARS204773:0:Tyes--0183
HAUR316274:2:Tyes---0
HCHE349521:0:Tyes--48650
HDUC233412:0:Tyes-101073
HHAL349124:0:Tyes--12600
HHEP235279:0:Tyes---0
HINF281310:0:Tyes-10430
HINF374930:0:Tyes-011218
HINF71421:0:Tno-10413
HNEP81032:0:Tyes--01778
HPY:0:Tno--6070
HPYL357544:1:Tyes--5980
HPYL85963:0:Tno--5450
HSOM205914:1:Tyes-056
HSOM228400:0:Tno-045
ILOI283942:0:Tyes--02
JSP290400:1:Tyes--3140
JSP375286:0:Tyes--0194
KPNE272620:2:Tyes0123
KRAD266940:2:Fyes--14090
LACI272621:0:Tyes--0-
LBIF355278:2:Tyes---0
LBIF456481:2:Tno---0
LBOR355276:1:Tyes--13120
LBOR355277:1:Tno--01028
LBRE387344:2:Tyes---0
LCAS321967:1:Tyes---0
LCHO395495:0:Tyes--01589
LDEL321956:0:Tyes--0-
LDEL390333:0:Tyes--0-
LGAS324831:0:Tyes--0-
LHEL405566:0:Tyes--0-
LINN272626:1:Tno--0165
LINT189518:1:Tyes--02204
LINT267671:1:Tno--01468
LINT363253:3:Tyes---0
LJOH257314:0:Tyes--0-
LLAC272622:5:Tyes--0102
LLAC272623:0:Tyes--092
LMES203120:1:Tyes---0
LMON169963:0:Tno--098
LMON265669:0:Tyes--074
LPLA220668:0:Tyes---0
LPNE272624:0:Tno--0417
LPNE297245:1:Fno--0411
LPNE297246:1:Fyes--0414
LPNE400673:0:Tno--4570
LREU557436:0:Tyes--0-
LSAK314315:0:Tyes---0
LSPH444177:1:Tyes--37850
LWEL386043:0:Tyes--076
LXYL281090:0:Tyes--1430
MABS561007:1:Tyes--39590
MAER449447:0:Tyes--0-
MAQU351348:2:Tyes--02623
MAVI243243:0:Tyes--0-
MBOV233413:0:Tno--0-
MBOV410289:0:Tno--0-
MCAP243233:0:Tyes--6360
MEXT419610:0:Tyes--1270
MFLA265072:0:Tyes--02288
MGIL350054:3:Tyes--0-
MHYO262719:0:Tyes--0-
MHYO262722:0:Tno--0-
MLEP272631:0:Tyes--0-
MLOT266835:2:Tyes--01630
MMAG342108:0:Tyes--4860
MMAR394221:0:Tyes--8330
MMOB267748:0:Tyes--0-
MPET420662:1:Tyes--0384
MSME246196:0:Tyes--0-
MSP164756:1:Tno--0-
MSP164757:0:Tno--0-
MSP189918:2:Tyes--0-
MSP266779:3:Tyes--31790
MSP400668:0:Tyes--100
MSP409:2:Tyes--01586
MSUC221988:0:Tyes-210
MTBCDC:0:Tno--0-
MTBRV:0:Tno--0-
MTUB336982:0:Tno--0-
MTUB419947:0:Tyes--0-
MVAN350058:0:Tyes--0-
MXAN246197:0:Tyes--36830
NARO279238:0:Tyes--0660
NEUR228410:0:Tyes--2270
NEUT335283:2:Tyes--01958
NFAR247156:2:Tyes--0-
NGON242231:0:Tyes--0122
NHAM323097:2:Tyes--03083
NMEN122586:0:Tno--064
NMEN122587:0:Tyes--073
NMEN272831:0:Tno--060
NMEN374833:0:Tno--067
NMUL323848:3:Tyes--09
NOCE323261:1:Tyes--01213
NSEN222891:0:Tyes--0-
NSP103690:6:Tyes--0-
NSP35761:1:Tyes--34460
NSP387092:0:Tyes--5720
NWIN323098:0:Tyes--02616
OANT439375:5:Tyes--1360
OCAR504832:0:Tyes--02467
OIHE221109:0:Tyes--14230
PACN267747:0:Tyes--0-
PAER208963:0:Tyes-159205128
PAER208964:0:Tno-269404829
PARC259536:0:Tyes--0256
PATL342610:0:Tyes4014188420
PCAR338963:0:Tyes--4520
PCRY335284:1:Tyes--0271
PDIS435591:0:Tyes---0
PENT384676:0:Tyes-324104601
PFLU205922:0:Tyes-148750750
PFLU216595:1:Tyes-411752570
PFLU220664:0:Tyes-149553930
PGIN242619:0:Tyes---0
PHAL326442:1:Tyes0-488489
PING357804:0:Tyes-310310
PINT246198:1:Tyes---0
PLUM243265:0:Fyes4210
PMAR167539:0:Tyes--01556
PMAR167555:0:Tyes---0
PMAR59920:0:Tno---0
PMAR74547:0:Tyes---0
PMEN399739:0:Tyes-011651258
PMOB403833:0:Tyes--0-
PMUL272843:1:Tyes-013
PNAP365044:8:Tyes--20420
PPEN278197:0:Tyes--0-
PPRO298386:2:Tyes--02
PPUT160488:0:Tno-181248000
PPUT351746:0:Tyes-334347070
PPUT76869:0:Tno-133648980
PRUM264731:0:Tyes---0
PSP117:0:Tyes--42370
PSP296591:2:Tyes--15960
PSP312153:0:Tyes--01675
PSP56811:2:Tyes--16070
PSTU379731:0:Tyes-015941709
PSYR205918:0:Tyes-026412803
PSYR223283:2:Tyes-186804852
RAKA293614:0:Fyes--0-
RBEL336407:0:Tyes--0-
RBEL391896:0:Fno--0-
RCAS383372:0:Tyes---0
RCON272944:0:Tno--0-
RDEN375451:4:Tyes--33860
RETL347834:5:Tyes--0624
REUT264198:3:Tyes--4100
REUT381666:2:Tyes--24170
RFEL315456:2:Tyes--0-
RFER338969:1:Tyes--2420
RLEG216596:6:Tyes--0700
RMAS416276:1:Tyes--0-
RMET266264:1:Tyes-0--
RMET266264:2:Tyes--23960
RPAL258594:0:Tyes--04072
RPAL316055:0:Tyes--04197
RPAL316056:0:Tyes--03895
RPAL316057:0:Tyes--0976
RPAL316058:0:Tyes--0479
RPOM246200:0:Tyes--0-
RPOM246200:1:Tyes---0
RPRO272947:0:Tyes--0-
RRIC392021:0:Fno--0-
RRIC452659:0:Tyes--0-
RRUB269796:1:Tyes--5250
RSAL288705:0:Tyes--0-
RSOL267608:1:Tyes--3030
RSP101510:3:Fyes--0-
RSP357808:0:Tyes---0
RSPH272943:3:Tyes--0-
RSPH272943:4:Tyes---0
RSPH349101:1:Tno--0-
RSPH349101:2:Tno---0
RSPH349102:4:Tyes--0-
RSPH349102:5:Tyes---0
RTYP257363:0:Tno--0-
RXYL266117:0:Tyes--0-
SACI56780:0:Tyes---0
SAGA205921:0:Tno--01231
SAGA208435:0:Tno--01308
SAGA211110:0:Tyes--01333
SALA317655:1:Tyes--8780
SARE391037:0:Tyes--0-
SAUR158878:1:Tno--0159
SAUR158879:1:Tno--0156
SAUR196620:0:Tno--0156
SAUR273036:0:Tno--0220
SAUR282458:0:Tno--0155
SAUR282459:0:Tno--0152
SAUR359786:1:Tno--0153
SAUR359787:1:Tno--0108
SAUR367830:3:Tno--0114
SAUR418127:0:Tyes--0159
SAUR426430:0:Tno--0155
SAUR93061:0:Fno--0171
SAUR93062:1:Tno--0125
SAVE227882:1:Fyes--0-
SBAL399599:3:Tyes-012
SBAL402882:1:Tno-012
SBOY300268:1:Tyes3210
SCO:2:Fyes--0-
SDEG203122:0:Tyes--32860
SDEN318161:0:Tyes-012
SDYS300267:1:Tyes3210
SELO269084:0:Tyes--3090
SENT209261:0:Tno0123
SENT220341:0:Tno0123
SENT295319:0:Tno0123
SENT321314:2:Tno0123
SENT454169:2:Tno0123
SEPI176279:1:Tyes--096
SEPI176280:0:Tno--0170
SERY405948:0:Tyes--0-
SFLE198214:0:Tyes0123
SFLE373384:0:Tno0123
SFUM335543:0:Tyes---0
SGLO343509:3:Tyes0-12
SGOR29390:0:Tyes---0
SHAE279808:0:Tyes--1160
SHAL458817:0:Tyes4210
SHIGELLA:0:Tno0123
SLAC55218:1:Fyes--01129
SLOI323850:0:Tyes-210
SMED366394:3:Tyes--0492
SMEL266834:2:Tyes--0523
SMUT210007:0:Tyes--01343
SONE211586:1:Tyes-012
SPEA398579:0:Tno4210
SPNE1313:0:Tyes--0603
SPNE170187:0:Tyes--0606
SPNE171101:0:Tno--0636
SPNE487213:0:Tno--0389
SPNE487214:0:Tno--0660
SPNE488221:0:Tno--0621
SPRO399741:1:Tyes0234
SPYO160490:0:Tno---0
SPYO186103:0:Tno---0
SPYO193567:0:Tno---0
SPYO198466:0:Tno---0
SPYO286636:0:Tno---0
SPYO293653:0:Tno---0
SPYO319701:0:Tyes---0
SPYO370551:0:Tno---0
SPYO370552:0:Tno---0
SPYO370554:0:Tyes---0
SRUB309807:1:Tyes---0
SSAP342451:2:Tyes--1260
SSED425104:0:Tyes-210
SSON300269:1:Tyes3210
SSP1131:0:Tyes---0
SSP1148:0:Tyes--0-
SSP292414:2:Tyes--02486
SSP321327:0:Tyes--17740
SSP321332:0:Tyes--13820
SSP387093:0:Tyes--17500
SSP644076:4:Fyes--0-
SSP644076:6:Fyes---0
SSP64471:0:Tyes--2230
SSP84588:0:Tyes--1740
SSP94122:1:Tyes-210
SSUI391295:0:Tyes---0
SSUI391296:0:Tyes---0
STHE264199:0:Tyes--0147
STHE292459:0:Tyes---0
STHE299768:0:Tno--0139
STHE322159:2:Tyes--0152
STRO369723:0:Tyes---0
STYP99287:1:Tyes0123
TCRU317025:0:Tyes-68501
TDEN243275:0:Tyes--0-
TDEN292415:0:Tyes--06
TDEN326298:0:Tyes--0-
TELO197221:0:Tyes--9200
TERY203124:0:Tyes--0-
TFUS269800:0:Tyes---0
TLET416591:0:Tyes--0-
TMAR243274:0:Tyes--0-
TPAL243276:0:Tyes--0-
TPET390874:0:Tno--0-
TROS309801:0:Tyes---0
TSP28240:0:Tyes--0-
TTHE262724:1:Tyes--0287
TTHE300852:2:Tyes--0286
TTUR377629:0:Tyes--084
VCHO:0:Tyes1853-10
VCHO345073:1:Tno1822-20
VEIS391735:1:Tyes--5990
VFIS312309:2:Tyes-747-0
VPAR223926:0:Tyes-0--
VPAR223926:1:Tyes--01
VVUL196600:1:Tyes-0--
VVUL196600:2:Tyes0-314315
VVUL216895:0:Tno-0--
VVUL216895:1:Tno307-10
WPIP955:0:Tyes--0-
WSUC273121:0:Tyes--0552
XAUT78245:1:Tyes--6450
XAXO190486:0:Tyes--7500
XCAM190485:0:Tyes--7330
XCAM314565:0:Tno--0680
XCAM316273:0:Tno--7590
XCAM487884:0:Tno--0727
XFAS160492:2:Tno--01136
XFAS183190:1:Tyes--9760
XFAS405440:0:Tno--9270
XORY291331:0:Tno--2360
XORY342109:0:Tyes--1990
XORY360094:0:Tno--5450
YENT393305:1:Tyes0234
YPES187410:5:Tno0234
YPES214092:3:Tno-012
YPES349746:2:Tno0235
YPES360102:3:Tyes4210
YPES377628:2:Tno0234
YPES386656:2:Tno4210
YPSE273123:2:Tno0234
YPSE349747:2:Tno4210
ZMOB264203:0:Tyes--01570



Back to top