CANDIDATE ID: 957

CANDIDATE ID: 957

NUMBER OF GENES: 4
AVERAGE SCORE:    9.9948633e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G6616 (ycgL) (b1179)
   Products of gene:
     - G6616-MONOMER (conserved protein)

- EG10598 (minE) (b1174)
   Products of gene:
     - EG10598-MONOMER (cell division topological specificity factor and inhibitory component of the MinC-MinD-MinE system that regulates septum placement)

- EG10597 (minD) (b1175)
   Products of gene:
     - EG10597-MONOMER (membrane ATPase of the MinC-MinD-MinE system that regulates septum placement)

- EG10596 (minC) (b1176)
   Products of gene:
     - EG10596-MONOMER (cell division inhibitor of the MinC-MinD-MinE and DicB-MinC systems that regulate septum placement)



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ORGANISMS CONTAINING AT LEAST 3 GENES FROM THE GROUP:

Total number of orgs: 202
Effective number of orgs (counting one per cluster within 468 clusters): 132

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317584
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329534
YPES386656 ncbi Yersinia pestis Pestoides F4
YPES377628 ncbi Yersinia pestis Nepal5164
YPES360102 ncbi Yersinia pestis Antiqua4
YPES349746 ncbi Yersinia pestis Angola4
YPES214092 ncbi Yersinia pestis CO924
YPES187410 ncbi Yersinia pestis KIM 104
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80814
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A4
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110184
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103314
XFAS405440 ncbi Xylella fastidiosa M123
XFAS183190 ncbi Xylella fastidiosa Temecula13
XFAS160492 ncbi Xylella fastidiosa 9a5c3
XCAM487884 Xanthomonas campestris pv. paulliniae4
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-104
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80044
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339134
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3064
VVUL216895 ncbi Vibrio vulnificus CMCP64
VVUL196600 ncbi Vibrio vulnificus YJ0164
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106334
VFIS312309 ncbi Vibrio fischeri ES1144
VEIS391735 ncbi Verminephrobacter eiseniae EF01-23
VCHO345073 ncbi Vibrio cholerae O3954
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169614
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252593
TCRU317025 ncbi Thiomicrospira crunogena XCL-24
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT24
SSP94122 ncbi Shewanella sp. ANA-34
SSON300269 ncbi Shigella sonnei Ss0464
SSED425104 ncbi Shewanella sediminis HAW-EB34
SPRO399741 ncbi Serratia proteamaculans 5684
SPEA398579 ncbi Shewanella pealeana ATCC 7003454
SONE211586 ncbi Shewanella oneidensis MR-14
SMEL266834 ncbi Sinorhizobium meliloti 10213
SMED366394 ncbi Sinorhizobium medicae WSM4193
SLOI323850 ncbi Shewanella loihica PV-44
SHIGELLA ncbi Shigella flexneri 2a str. 2457T4
SHAL458817 ncbi Shewanella halifaxensis HAW-EB44
SGLO343509 ncbi Sodalis glossinidius morsitans4
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB3
SFLE373384 ncbi Shigella flexneri 5 str. 84014
SFLE198214 ncbi Shigella flexneri 2a str. 3014
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4764
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B674
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91504
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT184
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty24
SDYS300267 ncbi Shigella dysenteriae Sd1974
SDEN318161 ncbi Shewanella denitrificans OS2174
SBOY300268 ncbi Shigella boydii Sb2274
SBAL402882 ncbi Shewanella baltica OS1854
SBAL399599 ncbi Shewanella baltica OS1954
SACI56780 ncbi Syntrophus aciditrophicus SB3
RSOL267608 ncbi Ralstonia solanacearum GMI10003
RPAL316055 ncbi Rhodopseudomonas palustris BisA533
RMET266264 ncbi Ralstonia metallidurans CH343
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38413
RFER338969 ncbi Rhodoferax ferrireducens T1183
REUT381666 ncbi Ralstonia eutropha H163
REUT264198 ncbi Ralstonia eutropha JMP1343
RETL347834 ncbi Rhizobium etli CFN 423
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30004
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a4
PSTU379731 ncbi Pseudomonas stutzeri A15014
PSP56811 Psychrobacter sp.4
PSP296591 ncbi Polaromonas sp. JS6663
PPUT76869 ncbi Pseudomonas putida GB-14
PPUT351746 ncbi Pseudomonas putida F14
PPUT160488 ncbi Pseudomonas putida KT24404
PPRO298386 ncbi Photobacterium profundum SS94
PNAP365044 ncbi Polaromonas naphthalenivorans CJ23
PMEN399739 ncbi Pseudomonas mendocina ymp4
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO14
PING357804 ncbi Psychromonas ingrahamii 374
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1254
PFLU220664 ncbi Pseudomonas fluorescens Pf-54
PFLU216595 ncbi Pseudomonas fluorescens SBW254
PFLU205922 ncbi Pseudomonas fluorescens Pf0-14
PENT384676 ncbi Pseudomonas entomophila L484
PCRY335284 ncbi Psychrobacter cryohalolentis K54
PATL342610 ncbi Pseudoalteromonas atlantica T6c4
PARC259536 ncbi Psychrobacter arcticus 273-44
PAER208964 ncbi Pseudomonas aeruginosa PAO14
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA144
OANT439375 ncbi Ochrobactrum anthropi ATCC 491883
NOCE323261 ncbi Nitrosococcus oceani ATCC 197074
NMEN374833 ncbi Neisseria meningitidis 0534423
NMEN272831 ncbi Neisseria meningitidis FAM183
NMEN122587 ncbi Neisseria meningitidis Z24913
NMEN122586 ncbi Neisseria meningitidis MC583
NEUT335283 ncbi Nitrosomonas eutropha C913
NEUR228410 ncbi Nitrosomonas europaea ATCC 197183
MSP409 Methylobacterium sp.3
MSP400668 ncbi Marinomonas sp. MWYL14
MSP266779 ncbi Chelativorans sp. BNC13
MPET420662 ncbi Methylibium petroleiphilum PM13
MLOT266835 ncbi Mesorhizobium loti MAFF3030993
MEXT419610 ncbi Methylobacterium extorquens PA13
MCAP243233 ncbi Methylococcus capsulatus Bath3
MAQU351348 ncbi Marinobacter aquaeolei VT84
LPNE400673 ncbi Legionella pneumophila Corby3
LPNE297246 ncbi Legionella pneumophila Paris3
LPNE297245 ncbi Legionella pneumophila Lens3
LCHO395495 ncbi Leptothrix cholodnii SP-63
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785784
JSP375286 ncbi Janthinobacterium sp. Marseille3
HMOD498761 ncbi Heliobacterium modesticaldum Ice13
HHAL349124 ncbi Halorhodospira halophila SL13
HCHE349521 ncbi Hahella chejuensis KCTC 23964
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237793
HARS204773 ncbi Herminiimonas arsenicoxydans3
GVIO251221 ncbi Gloeobacter violaceus PCC 74213
GOXY290633 ncbi Gluconobacter oxydans 621H3
GBET391165 ncbi Granulibacter bethesdensis CGDNIH13
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-003
FTUL418136 ncbi Francisella tularensis tularensis WY96-34183
FTUL401614 ncbi Francisella novicida U1123
FTUL393115 ncbi Francisella tularensis tularensis FSC1983
FTUL393011 ncbi Francisella tularensis holarctica OSU183
FTUL351581 Francisella tularensis holarctica FSC2003
FRANT ncbi Francisella tularensis tularensis SCHU S43
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250173
ESP42895 Enterobacter sp.4
EFER585054 ncbi Escherichia fergusonii ATCC 354694
ECOO157 ncbi Escherichia coli O157:H7 EDL9334
ECOL83334 Escherichia coli O157:H74
ECOL585397 ncbi Escherichia coli ED1a4
ECOL585057 ncbi Escherichia coli IAI394
ECOL585056 ncbi Escherichia coli UMN0264
ECOL585055 ncbi Escherichia coli 559894
ECOL585035 ncbi Escherichia coli S884
ECOL585034 ncbi Escherichia coli IAI14
ECOL481805 ncbi Escherichia coli ATCC 87394
ECOL469008 ncbi Escherichia coli BL21(DE3)4
ECOL439855 ncbi Escherichia coli SMS-3-54
ECOL413997 ncbi Escherichia coli B str. REL6064
ECOL409438 ncbi Escherichia coli SE114
ECOL405955 ncbi Escherichia coli APEC O14
ECOL364106 ncbi Escherichia coli UTI894
ECOL362663 ncbi Escherichia coli 5364
ECOL331111 ncbi Escherichia coli E24377A4
ECOL316407 ncbi Escherichia coli K-12 substr. W31104
ECOL199310 ncbi Escherichia coli CFT0734
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10434
DRED349161 ncbi Desulfotomaculum reducens MI-13
DPSY177439 ncbi Desulfotalea psychrophila LSv543
DARO159087 ncbi Dechloromonas aromatica RCB3
CVIO243365 ncbi Chromobacterium violaceum ATCC 124723
CSP501479 Citreicella sp. SE453
CSAL290398 ncbi Chromohalobacter salexigens DSM 30434
CPSY167879 ncbi Colwellia psychrerythraea 34H4
CPHY357809 ncbi Clostridium phytofermentans ISDg3
CJAP155077 Cellvibrio japonicus4
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29013
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C3
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN3
CBLO203907 ncbi Candidatus Blochmannia floridanus3
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80523
BVIE269482 ncbi Burkholderia vietnamiensis G43
BTHA271848 ncbi Burkholderia thailandensis E2643
BSUI470137 ncbi Brucella suis ATCC 234453
BSUI204722 ncbi Brucella suis 13303
BSP376 Bradyrhizobium sp.3
BSP36773 Burkholderia sp.3
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)3
BPSE320373 ncbi Burkholderia pseudomallei 6683
BPSE320372 ncbi Burkholderia pseudomallei 1710b3
BPSE272560 ncbi Burkholderia pseudomallei K962433
BPET94624 Bordetella petrii3
BPER257313 ncbi Bordetella pertussis Tohama I3
BPAR257311 ncbi Bordetella parapertussis 128223
BMEL359391 ncbi Brucella melitensis biovar Abortus 23083
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M3
BMAL320389 ncbi Burkholderia mallei NCTC 102473
BMAL320388 ncbi Burkholderia mallei SAVP13
BMAL243160 ncbi Burkholderia mallei ATCC 233443
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1103
BCIC186490 Candidatus Baumannia cicadellinicola3
BCEN331272 ncbi Burkholderia cenocepacia HI24243
BCEN331271 ncbi Burkholderia cenocepacia AU 10543
BCAN483179 ncbi Brucella canis ATCC 233653
BBRO257310 ncbi Bordetella bronchiseptica RB503
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)3
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)3
BAMB398577 ncbi Burkholderia ambifaria MC40-63
BAMB339670 ncbi Burkholderia ambifaria AMMD3
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9413
ASP76114 ncbi Aromatoleum aromaticum EbN13
ASP62977 ncbi Acinetobacter sp. ADP14
ASP62928 ncbi Azoarcus sp. BH723
ASP232721 ncbi Acidovorax sp. JS423
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4494
AHYD196024 Aeromonas hydrophila dhakensis4
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232703
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-13
ACRY349163 ncbi Acidiphilium cryptum JF-53
ABOR393595 ncbi Alcanivorax borkumensis SK24
ABAU360910 ncbi Bordetella avium 197N3
AAVE397945 ncbi Acidovorax citrulli AAC00-13


Names of the homologs of the genes in the group in each of these orgs
  G6616   EG10598   EG10597   EG10596   
YPSE349747 YPSIP31758_2009YPSIP31758_2012YPSIP31758_2011YPSIP31758_2010
YPSE273123 YPTB2062YPTB2059YPTB2060YPTB2061
YPES386656 YPDSF_1042YPDSF_1045YPDSF_1044YPDSF_1043
YPES377628 YPN_1556YPN_1553YPN_1554YPN_1555
YPES360102 YPA_1462YPA_1459YPA_1460YPA_1461
YPES349746 YPANGOLA_A2398YPANGOLA_A2401YPANGOLA_A2400YPANGOLA_A2399
YPES214092 YPO2080YPO2076YPO2077YPO2078
YPES187410 Y2231Y2234Y2233Y2232
YENT393305 YE2368YE2373YE2372YE2371
XORY360094 XOOORF_4919XOOORF_1340XOOORF_1341XOOORF_1342
XORY342109 XOO0428XOO3338XOO3337XOO3336
XORY291331 XOO0464XOO3532XOO3531XOO3530
XFAS405440 XFASM12_0678XFASM12_0679XFASM12_0680
XFAS183190 PD_0566PD_0567PD_0568
XFAS160492 XF1320XF1321XF1322
XCAM487884 XCC-B100_4189XCC-B100_3218XCC-B100_3217XCC-B100_3216
XCAM316273 XCAORF_0267XCAORF_1345XCAORF_1346XCAORF_1347
XCAM314565 XC_4086XC_3123XC_3122XC_3121
XCAM190485 XCC3997XCC1123XCC1124XCC1125
XAXO190486 XAC4085XAC1224XAC1225XAC1226
VVUL216895 VV1_0131VV1_0134VV1_0133VV1_0132
VVUL196600 VV1058VV1055VV1056VV1057
VPAR223926 VP0875VP0872VP0873VP0874
VFIS312309 VF1703VF1706VF1705VF1704
VEIS391735 VEIS_1634VEIS_1633VEIS_1632
VCHO345073 VC0395_A1544VC0395_A1547VC0395_A1546VC0395_A1545
VCHO VC1957VC1961VC1960VC1959
TDEN292415 TBD_2304TBD_2303TBD_2302
TCRU317025 TCR_0238TCR_1166TCR_1165TCR_1164
STYP99287 STM1813STM1816STM1815STM1814
SSP94122 SHEWANA3_2381SHEWANA3_2384SHEWANA3_2383SHEWANA3_2382
SSON300269 SSO_1168SSO_1163SSO_1164SSO_1165
SSED425104 SSED_2518SSED_2521SSED_2520SSED_2519
SPRO399741 SPRO_2755SPRO_2758SPRO_2757SPRO_2756
SPEA398579 SPEA_2443SPEA_2446SPEA_2445SPEA_2444
SONE211586 SO_2575SO_2578SO_2577SO_2576
SMEL266834 SMB21522SMB21523SMB21524
SMED366394 SMED_4342SMED_4341SMED_4340
SLOI323850 SHEW_2183SHEW_2186SHEW_2185SHEW_2184
SHIGELLA YCGLMINEMINDMINC
SHAL458817 SHAL_1837SHAL_1834SHAL_1835SHAL_1836
SGLO343509 SG1337SG1334SG1335SG1336
SFUM335543 SFUM_1282SFUM_1281SFUM_1280
SFLE373384 SFV_1186SFV_1178SFV_1179SFV_1180
SFLE198214 AAN42784.1AAN42777.1AAN42778.1AAN42779.1
SENT454169 SEHA_C2012SEHA_C2015SEHA_C2014SEHA_C2013
SENT321314 SCH_1806SCH_1809SCH_1808SCH_1807
SENT295319 SPA1060SPA1057SPA1058SPA1059
SENT220341 STY1943STY1946STY1945STY1944
SENT209261 T1064T1061T1062T1063
SDYS300267 SDY_1211SDY_1205SDY_1206SDY_1207
SDEN318161 SDEN_1630SDEN_1627SDEN_1628SDEN_1629
SBOY300268 SBO_1165SBO_1896SBO_1895SBO_1894
SBAL402882 SHEW185_1896SHEW185_1893SHEW185_1894SHEW185_1895
SBAL399599 SBAL195_1903SBAL195_1900SBAL195_1901SBAL195_1902
SACI56780 SYN_02706SYN_02705SYN_02704
RSOL267608 RSC3366RSC3365RSC3364
RPAL316055 RPE_3119RPE_3120RPE_3121
RMET266264 RMET_0033RMET_0034RMET_0035
RLEG216596 PRL110544PRL110545PRL110546
RFER338969 RFER_0034RFER_0035RFER_0036
REUT381666 H16_A0084H16_A0085H16_A0086
REUT264198 REUT_A0062REUT_A0063REUT_A0064
RETL347834 RHE_PE00407RHE_PE00408RHE_PE00409
PSYR223283 PSPTO_3921PSPTO_3874PSPTO_3873PSPTO_3872
PSYR205918 PSYR_1564PSYR_1611PSYR_1612PSYR_1613
PSTU379731 PST_1364PST_1423PST_1424PST_1425
PSP56811 PSYCPRWF_1721PSYCPRWF_2151PSYCPRWF_2150PSYCPRWF_2149
PSP296591 BPRO_0018BPRO_0019BPRO_0020
PPUT76869 PPUTGB1_4120PPUTGB1_1324PPUTGB1_1325PPUTGB1_1326
PPUT351746 PPUT_1298PPUT_3987PPUT_3986PPUT_3985
PPUT160488 PP_4590PP_1732PP_1733PP_1734
PPRO298386 PBPRA1080PBPRA1077PBPRA1078PBPRA1079
PNAP365044 PNAP_0007PNAP_0008PNAP_0009
PMEN399739 PMEN_1774PMEN_1233PMEN_1234PMEN_1235
PLUM243265 PLU2139PLU2136PLU2137PLU2138
PING357804 PING_1076PING_1079PING_1078PING_1077
PHAL326442 PSHAB0508PSHAB0505PSHAB0506PSHAB0507
PFLU220664 PFL_1496PFL_4381PFL_4380PFL_4379
PFLU216595 PFLU1517PFLU4371PFLU4370PFLU4369
PFLU205922 PFL_1389PFL_1693PFL_1694PFL_1695
PENT384676 PSEEN4034PSEEN1444PSEEN1445PSEEN1446
PCRY335284 PCRYO_0807PCRYO_2092PCRYO_2091PCRYO_2090
PATL342610 PATL_2802PATL_0927PATL_0926PATL_0925
PARC259536 PSYC_0800PSYC_1810PSYC_1809PSYC_1808
PAER208964 PA1295PA3245PA3244PA3243
PAER208963 PA14_47450PA14_22010PA14_22020PA14_22040
OANT439375 OANT_2972OANT_2971OANT_2970
NOCE323261 NOC_2718NOC_0506NOC_0507NOC_0508
NMEN374833 NMCC_1980NMCC_1981NMCC_1982
NMEN272831 NMC0162NMC0161NMC0160
NMEN122587 NMA0099NMA0100NMA0101
NMEN122586 NMB_0172NMB_0171NMB_0170
NEUT335283 NEUT_1137NEUT_1136NEUT_1135
NEUR228410 NE1829NE1830NE1831
MSP409 M446_3687M446_0286M446_3689
MSP400668 MMWYL1_2530MMWYL1_2352MMWYL1_2353MMWYL1_2354
MSP266779 MESO_0321MESO_0320MESO_0319
MPET420662 MPE_A3343MPE_A3344MPE_A3345
MLOT266835 MSL1949MLL1950MLL1951
MEXT419610 MEXT_1269MEXT_1268MEXT_1263
MCAP243233 MCA_3068MCA_3067MCA_3066
MAQU351348 MAQU_1609MAQU_2337MAQU_2336MAQU_2335
LPNE400673 LPC_1165LPC_1164LPC_0974
LPNE297246 LPP1690LPP1689LPP1510
LPNE297245 LPL1689LPL1688LPL1473
LCHO395495 LCHO_0034LCHO_0033LCHO_0032
KPNE272620 GKPORF_B1470GKPORF_B1473GKPORF_B1472GKPORF_B1471
JSP375286 MMA_1173MMA_1174MMA_1175
HMOD498761 HM1_2724HM1_2725HM1_2726
HHAL349124 HHAL_1589HHAL_1590HHAL_1591
HCHE349521 HCH_02617HCH_01742HCH_01743HCH_01744
HAUR316274 HAUR_3423HAUR_3422HAUR_3421
HARS204773 HEAR1071HEAR1072HEAR1073
GVIO251221 GSR1994GLR1993GLR1992
GOXY290633 GOX0402GOX0401GOX0400
GBET391165 GBCGDNIH1_0475GBCGDNIH1_0474GBCGDNIH1_0473
FTUL458234 FTA_0547FTA_0548FTA_0549
FTUL418136 FTW_0327FTW_0328FTW_0329
FTUL401614 FTN_0329FTN_0330FTN_0331
FTUL393115 FTF1607FTF1606FTF1605
FTUL393011 FTH_0515FTH_0516FTH_0517
FTUL351581 FTL_0518FTL_0519FTL_0520
FRANT MINEMINDMINC
FPHI484022 FPHI_0496FPHI_0495FPHI_0494
ESP42895 ENT638_2370ENT638_2373ENT638_2372ENT638_2371
EFER585054 EFER_1775EFER_1778EFER_1777EFER_1776
ECOO157 YCGLMINEMINDMINC
ECOL83334 ECS1674ECS1668ECS1669ECS1670
ECOL585397 ECED1_1321ECED1_1316ECED1_1317ECED1_1318
ECOL585057 ECIAI39_1894ECIAI39_1899ECIAI39_1898ECIAI39_1897
ECOL585056 ECUMN_1468ECUMN_1463ECUMN_1464ECUMN_1465
ECOL585055 EC55989_1272EC55989_1267EC55989_1268EC55989_1269
ECOL585035 ECS88_1242ECS88_1237ECS88_1238ECS88_1239
ECOL585034 ECIAI1_1195ECIAI1_1190ECIAI1_1191ECIAI1_1192
ECOL481805 ECOLC_2446ECOLC_2451ECOLC_2450ECOLC_2449
ECOL469008 ECBD_2443ECBD_2448ECBD_2447ECBD_2446
ECOL439855 ECSMS35_1970ECSMS35_1975ECSMS35_1974ECSMS35_1973
ECOL413997 ECB_01154ECB_01149ECB_01150ECB_01151
ECOL409438 ECSE_1226ECSE_1220ECSE_1221ECSE_1222
ECOL405955 APECO1_292APECO1_287APECO1_288APECO1_289
ECOL364106 UTI89_C1365UTI89_C1359UTI89_C1360UTI89_C1361
ECOL362663 ECP_1222ECP_1216ECP_1217ECP_1218
ECOL331111 ECE24377A_1323ECE24377A_1318ECE24377A_1319ECE24377A_1320
ECOL316407 ECK1167:JW1168:B1179ECK1162:JW1163:B1174ECK1163:JW1164:B1175ECK1164:JW1165:B1176
ECOL199310 C1627C1621C1622C1623
ECAR218491 ECA2367ECA2370ECA2369ECA2368
DRED349161 DRED_2542DRED_2543DRED_2544
DPSY177439 DP0668DP0667DP0666
DARO159087 DARO_0277DARO_0276DARO_0275
CVIO243365 CV_3377CV_3376CV_3375
CSP501479 CSE45_0686CSE45_0685CSE45_0684
CSAL290398 CSAL_1462CSAL_3025CSAL_3026CSAL_3027
CPSY167879 CPS_3517CPS_2583CPS_2582CPS_2581
CPHY357809 CPHY_2369CPHY_2370CPHY_2371
CJAP155077 CJA_2437CJA_1320CJA_1319CJA_1318
CHYD246194 CHY_0349CHY_0348CHY_0347
CDES477974 DAUD_1460DAUD_1461DAUD_1462
CBLO291272 BPEN_455BPEN_454BPEN_453
CBLO203907 BFL441BFL440BFL439
CBEI290402 CBEI_0498CBEI_0497CBEI_0496
BVIE269482 BCEP1808_0901BCEP1808_0900BCEP1808_0899
BTHA271848 BTH_I1571BTH_I1570BTH_I1569
BSUI470137 BSUIS_B0328BSUIS_B0327BSUIS_B0326
BSUI204722 BR_A0323BR_A0322BR_A0321
BSP376 BRADO6568BRADO6569BRADO6570
BSP36773 BCEP18194_A4089BCEP18194_A4088BCEP18194_A4087
BSP107806 BU325BU326BU327
BPSE320373 BURPS668_2966BURPS668_2967BURPS668_2968
BPSE320372 BURPS1710B_A3322BURPS1710B_A3323BURPS1710B_A3324
BPSE272560 BPSL2595BPSL2596BPSL2597
BPET94624 BPET0891BPET0892BPET0893
BPER257313 BP3229BP3228BP3227
BPAR257311 BPP3581BPP3580BPP3579
BMEL359391 BAB2_0882BAB2_0883BAB2_0884
BMEL224914 BMEII0925BMEII0926BMEII0927
BMAL320389 BMA10247_1979BMA10247_1980BMA10247_1981
BMAL320388 BMASAVP1_A0801BMASAVP1_A0800BMASAVP1_A0799
BMAL243160 BMA_2111BMA_2112BMA_2113
BJAP224911 BSR4213BLR4212BLR4211
BCIC186490 BCI_0446BCI_0445BCI_0444
BCEN331272 BCEN2424_0985BCEN2424_0984BCEN2424_0983
BCEN331271 BCEN_0506BCEN_0505BCEN_0504
BCAN483179 BCAN_B0324BCAN_B0323BCAN_B0322
BBRO257310 BB4016BB4015BB4014
BAPH372461 BCC_203BCC_204BCC_205
BAPH198804 BUSG316BUSG317BUSG318
BAMB398577 BAMMC406_0857BAMMC406_0856BAMMC406_0855
BAMB339670 BAMB_0845BAMB_0844BAMB_0843
BABO262698 BRUAB2_0858BRUAB2_0859BRUAB2_0860
ASP76114 EBA6839EBA6838EBA6837
ASP62977 ACIAD2309ACIAD0893ACIAD0894ACIAD0895
ASP62928 AZO1654AZO1655AZO1656
ASP232721 AJS_0067AJS_0066AJS_0065
ASAL382245 ASA_2166ASA_2169ASA_2168ASA_2167
AHYD196024 AHA_2135AHA_2132AHA_2133AHA_2134
AFER243159 AFE_3013AFE_3012AFE_3011
AEHR187272 MLG_1996MLG_1997MLG_1998
ACRY349163 ACRY_1990ACRY_1991ACRY_1992
ABOR393595 ABO_1767ABO_1118ABO_1119ABO_1120
ABAU360910 BAV2790BAV2789BAV2788
AAVE397945 AAVE_0126AAVE_0125AAVE_0124


Organism features enriched in list (features available for 189 out of the 202 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 2.963e-61292
Arrangment:Pairs 0.005294047112
Disease:Brucellosis 0.003453655
Disease:Bubonic_plague 0.001099466
Disease:Dysentery 0.001099466
Disease:Gastroenteritis 0.00100881013
Disease:Tularemia 0.003453655
Endospores:No 4.266e-1134211
Endospores:Yes 7.299e-6453
GC_Content_Range4:0-40 1.624e-2219213
GC_Content_Range4:40-60 7.644e-9104224
GC_Content_Range4:60-100 0.000053666145
GC_Content_Range7:0-30 0.0009437647
GC_Content_Range7:30-40 5.243e-1813166
GC_Content_Range7:50-60 6.904e-1367107
GC_Content_Range7:60-70 1.699e-666134
Genome_Size_Range5:0-2 9.990e-1712155
Genome_Size_Range5:2-4 0.000013442197
Genome_Size_Range5:4-6 1.505e-17105184
Genome_Size_Range5:6-10 3.078e-63047
Genome_Size_Range9:1-2 3.100e-167128
Genome_Size_Range9:2-3 9.879e-718120
Genome_Size_Range9:4-5 7.685e-75296
Genome_Size_Range9:5-6 3.636e-95388
Genome_Size_Range9:6-8 7.020e-82838
Gram_Stain:Gram_Neg 1.245e-29168333
Gram_Stain:Gram_Pos 3.342e-235150
Habitat:Multiple 0.001094773178
Habitat:Specialized 0.0017177853
Motility:No 2.137e-921151
Motility:Yes 1.184e-8118267
Optimal_temp.:- 0.0008738100257
Optimal_temp.:25-30 0.00018591419
Oxygen_Req:Aerobic 0.008563771185
Oxygen_Req:Anaerobic 9.850e-109102
Oxygen_Req:Facultative 0.001015681201
Pathogenic_in:No 0.003927660226
Pathogenic_in:Plant 0.00103901115
Shape:Coccus 4.714e-61082
Shape:Rod 9.277e-15154347
Shape:Spiral 0.0001538234
Temp._range:Hyperthermophilic 0.0011489123
Temp._range:Mesophilic 0.0080596163473
Temp._range:Psychrophilic 0.000034799
Temp._range:Thermophilic 0.0001076235



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 369
Effective number of orgs (counting one per cluster within 468 clusters): 293

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM40
XAUT78245 ncbi Xanthobacter autotrophicus Py20
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I1
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTHE262724 ncbi Thermus thermophilus HB271
TSP28240 Thermotoga sp.1
TROS309801 ncbi Thermomicrobium roseum DSM 51591
TPET390874 ncbi Thermotoga petrophila RKU-11
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TMAR243274 ncbi Thermotoga maritima MSB81
TLET416591 ncbi Thermotoga lettingae TMO1
TKOD69014 ncbi Thermococcus kodakarensis KOD11
TFUS269800 ncbi Thermobifida fusca YX0
TERY203124 ncbi Trichodesmium erythraeum IMS1011
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12510
TDEN243275 ncbi Treponema denticola ATCC 354051
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
STRO369723 ncbi Salinispora tropica CNB-4400
STOK273063 ncbi Sulfolobus tokodaii 70
STHE322159 ncbi Streptococcus thermophilus LMD-90
STHE299768 ncbi Streptococcus thermophilus CNRZ10660
STHE264199 ncbi Streptococcus thermophilus LMG 183110
SSUI391296 ncbi Streptococcus suis 98HAH330
SSUI391295 ncbi Streptococcus suis 05ZYH330
SSP644076 Silicibacter sp. TrichCH4B0
SSP387093 ncbi Sulfurovum sp. NBC37-10
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)1
SSP321327 ncbi Synechococcus sp. JA-3-3Ab1
SSP292414 ncbi Ruegeria sp. TM10400
SSOL273057 ncbi Sulfolobus solfataricus P20
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153050
SRUB309807 ncbi Salinibacter ruber DSM 138550
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370552 ncbi Streptococcus pyogenes MGAS102700
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103940
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SPNE488221 ncbi Streptococcus pneumoniae 705850
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-60
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-140
SPNE171101 ncbi Streptococcus pneumoniae R60
SPNE170187 ncbi Streptococcus pneumoniae G540
SPNE1313 Streptococcus pneumoniae0
SMUT210007 ncbi Streptococcus mutans UA1590
SMAR399550 ncbi Staphylothermus marinus F10
SLAC55218 Ruegeria lacuscaerulensis0
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14350
SGOR29390 Streptococcus gordonii Challis0
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23380
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122280
SEPI176279 ncbi Staphylococcus epidermidis RP62A0
SDEG203122 ncbi Saccharophagus degradans 2-401
SCO ncbi Streptomyces coelicolor A3(2)0
SAVE227882 ncbi Streptomyces avermitilis MA-46800
SAUR93062 ncbi Staphylococcus aureus aureus COL0
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83250
SAUR426430 ncbi Staphylococcus aureus aureus Newman0
SAUR418127 ncbi Staphylococcus aureus aureus Mu30
SAUR367830 Staphylococcus aureus aureus USA3000
SAUR359787 ncbi Staphylococcus aureus aureus JH10
SAUR359786 ncbi Staphylococcus aureus aureus JH90
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4760
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2520
SAUR273036 ncbi Staphylococcus aureus RF1220
SAUR196620 ncbi Staphylococcus aureus aureus MW20
SAUR158879 ncbi Staphylococcus aureus aureus N3150
SAUR158878 ncbi Staphylococcus aureus aureus Mu500
SARE391037 ncbi Salinispora arenicola CNS-2050
SALA317655 ncbi Sphingopyxis alaskensis RB22560
SAGA211110 ncbi Streptococcus agalactiae NEM3160
SAGA208435 ncbi Streptococcus agalactiae 2603V/R0
SAGA205921 ncbi Streptococcus agalactiae A9090
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99410
RTYP257363 ncbi Rickettsia typhi Wilmington0
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170250
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170290
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.10
RSP357808 ncbi Roseiflexus sp. RS-11
RSP101510 ncbi Rhodococcus jostii RHA10
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332090
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111700
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RPOM246200 ncbi Ruegeria pomeroyi DSS-30
RPAL316058 ncbi Rhodopseudomonas palustris HaA20
RPAL316057 ncbi Rhodopseudomonas palustris BisB50
RPAL316056 ncbi Rhodopseudomonas palustris BisB180
RPAL258594 ncbi Rhodopseudomonas palustris CGA0090
RMAS416276 ncbi Rickettsia massiliae MTU50
RFEL315456 ncbi Rickettsia felis URRWXCal20
RDEN375451 ncbi Roseobacter denitrificans OCh 1140
RCON272944 ncbi Rickettsia conorii Malish 70
RCAS383372 ncbi Roseiflexus castenholzii DSM 139411
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RALB246199 Ruminococcus albus 81
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97900
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-10
PSP117 Pirellula sp.0
PRUM264731 ncbi Prevotella ruminicola 230
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257450
PMOB403833 ncbi Petrotoga mobilis SJ951
PLUT319225 ncbi Chlorobium luteolum DSM 2730
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 170
PHOR70601 ncbi Pyrococcus horikoshii OT31
PGIN242619 ncbi Porphyromonas gingivalis W830
PFUR186497 ncbi Pyrococcus furiosus DSM 36381
PDIS435591 ncbi Parabacteroides distasonis ATCC 85030
PCAR338963 ncbi Pelobacter carbinolicus DSM 23801
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PAER178306 ncbi Pyrobaculum aerophilum IM20
PACN267747 ncbi Propionibacterium acnes KPA1712020
PABY272844 ncbi Pyrococcus abyssi GE51
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
OIHE221109 ncbi Oceanobacillus iheyensis HTE8311
OCAR504832 ncbi Oligotropha carboxidovorans OM50
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2550
NSP35761 Nocardioides sp.0
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
NMUL323848 ncbi Nitrosospira multiformis ATCC 251960
NHAM323097 ncbi Nitrobacter hamburgensis X140
NFAR247156 ncbi Nocardia farcinica IFM 101520
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124440
MXAN246197 ncbi Myxococcus xanthus DK 16220
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-10
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra0
MTUB336982 ncbi Mycobacterium tuberculosis F110
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H1
MTBRV ncbi Mycobacterium tuberculosis H37Rv0
MTBCDC ncbi Mycobacterium tuberculosis CDC15510
MSYN262723 ncbi Mycoplasma synoviae 530
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E1
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSP189918 ncbi Mycobacterium sp. KMS0
MSP164757 ncbi Mycobacterium sp. JLS0
MSP164756 ncbi Mycobacterium sp. MCS0
MSME246196 ncbi Mycobacterium smegmatis MC2 1550
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C61
MMAR426368 ncbi Methanococcus maripaludis C71
MMAR402880 ncbi Methanococcus maripaludis C51
MMAR394221 ncbi Maricaulis maris MCS100
MMAR368407 ncbi Methanoculleus marisnigri JR11
MMAR267377 ncbi Methanococcus maripaludis S21
MMAG342108 ncbi Magnetospirillum magneticum AMB-10
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV191
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26611
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK0
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MFLA265072 ncbi Methylobacillus flagellatus KT0
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P20
MBOV233413 ncbi Mycobacterium bovis AF2122/970
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MAVI243243 ncbi Mycobacterium avium 1040
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAER449447 ncbi Microcystis aeruginosa NIES-8431
MAEO419665 ncbi Methanococcus aeolicus Nankai-31
MACE188937 ncbi Methanosarcina acetivorans C2A0
MABS561007 ncbi Mycobacterium abscessus ATCC 199770
LXYL281090 ncbi Leifsonia xyli xyli CTCB070
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53341
LSPH444177 ncbi Lysinibacillus sphaericus C3-411
LSAK314315 ncbi Lactobacillus sakei sakei 23K1
LREU557436 ncbi Lactobacillus reuteri DSM 200160
LPLA220668 ncbi Lactobacillus plantarum WCFS11
LMON265669 ncbi Listeria monocytogenes 4b F23651
LMON169963 ncbi Listeria monocytogenes EGD-e1
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82930
LLAC272623 ncbi Lactococcus lactis lactis Il14030
LLAC272622 ncbi Lactococcus lactis cremoris SK110
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-000
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1301
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566011
LINN272626 ncbi Listeria innocua Clip112621
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LCAS321967 ncbi Lactobacillus casei ATCC 3340
LBRE387344 ncbi Lactobacillus brevis ATCC 3671
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1971
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5501
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)1
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)0
LACI272621 ncbi Lactobacillus acidophilus NCFM0
KRAD266940 ncbi Kineococcus radiotolerans SRS302160
JSP290400 ncbi Jannaschia sp. CCS10
ILOI283942 ncbi Idiomarina loihiensis L2TR1
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSOM228400 ncbi Haemophilus somnus 23361
HSOM205914 ncbi Haemophilus somnus 129PT1
HSAL478009 ncbi Halobacterium salinarum R10
HPYL85963 ncbi Helicobacter pylori J991
HPYL357544 ncbi Helicobacter pylori HPAG11
HPY ncbi Helicobacter pylori 266951
HNEP81032 Hyphomonas neptunium0
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMAR272569 ncbi Haloarcula marismortui ATCC 430491
HINF71421 ncbi Haemophilus influenzae Rd KW201
HINF374930 ncbi Haemophilus influenzae PittEE1
HINF281310 ncbi Haemophilus influenzae 86-028NP1
HHEP235279 ncbi Helicobacter hepaticus ATCC 514491
HDUC233412 ncbi Haemophilus ducreyi 35000HP1
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HACI382638 ncbi Helicobacter acinonychis Sheeba1
GURA351605 ncbi Geobacter uraniireducens Rf41
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-21
GSUL243231 ncbi Geobacter sulfurreducens PCA1
GMET269799 ncbi Geobacter metallireducens GS-151
GKAU235909 ncbi Geobacillus kaustophilus HTA4261
GFOR411154 ncbi Gramella forsetii KT08030
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S850
FSP1855 Frankia sp. EAN1pec0
FSP106370 ncbi Frankia sp. CcI30
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255861
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B11
FMAG334413 ncbi Finegoldia magna ATCC 293280
FJOH376686 ncbi Flavobacterium johnsoniae UW1010
FALN326424 ncbi Frankia alni ACN14a0
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ELIT314225 ncbi Erythrobacter litoralis HTCC25940
EFAE226185 ncbi Enterococcus faecalis V5830
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough0
DSP255470 ncbi Dehalococcoides sp. CBDB10
DSP216389 ncbi Dehalococcoides sp. BAV10
DSHI398580 ncbi Dinoroseobacter shibae DFL 120
DRAD243230 ncbi Deinococcus radiodurans R11
DOLE96561 ncbi Desulfococcus oleovorans Hxd30
DGEO319795 ncbi Deinococcus geothermalis DSM 113001
DETH243164 ncbi Dehalococcoides ethenogenes 1950
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G200
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA0
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTET212717 ncbi Clostridium tetani E881
CTEP194439 ncbi Chlorobium tepidum TLS0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CSP78 Caulobacter sp.0
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE250
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10620
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3820
CMIC31964 ncbi Clavibacter michiganensis sepedonicus0
CMET456442 ncbi Candidatus Methanoregula boonei 6A81
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CKLU431943 ncbi Clostridium kluyveri DSM 5551
CJEJ407148 ncbi Campylobacter jejuni jejuni 811161
CJEJ360109 ncbi Campylobacter jejuni doylei 269.970
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1761
CJEJ195099 ncbi Campylobacter jejuni RM12211
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111681
CJEI306537 ncbi Corynebacterium jeikeium K4110
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334060
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3810
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130320
CFET360106 ncbi Campylobacter fetus fetus 82-401
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CEFF196164 ncbi Corynebacterium efficiens YS-3140
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131290
CCUR360105 ncbi Campylobacter curvus 525.920
CCON360104 ncbi Campylobacter concisus 138261
CCHL340177 ncbi Chlorobium chlorochromatii CaD30
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1110
CBUR360115 ncbi Coxiella burnetii RSA 3310
CBUR227377 ncbi Coxiella burnetii RSA 4930
CAULO ncbi Caulobacter crescentus CB150
CACE272562 ncbi Clostridium acetobutylicum ATCC 8241
CABO218497 ncbi Chlamydophila abortus S26/30
BXEN266265 ncbi Burkholderia xenovorans LB4000
BWEI315730 ncbi Bacillus weihenstephanensis KBAB41
BTUR314724 ncbi Borrelia turicatae 91E1351
BTRI382640 ncbi Bartonella tribocorum CIP 1054760
BTHU412694 ncbi Bacillus thuringiensis Al Hakam1
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-271
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54820
BSUB ncbi Bacillus subtilis subtilis 1681
BQUI283165 ncbi Bartonella quintana Toulouse0
BPUM315750 ncbi Bacillus pumilus SAFR-0321
BLON206672 ncbi Bifidobacterium longum NCC27050
BLIC279010 ncbi Bacillus licheniformis ATCC 145801
BHER314723 ncbi Borrelia hermsii DAH1
BHEN283166 ncbi Bartonella henselae Houston-10
BHAL272558 ncbi Bacillus halodurans C-1251
BGAR290434 ncbi Borrelia garinii PBi1
BFRA295405 ncbi Bacteroides fragilis YCH460
BFRA272559 ncbi Bacteroides fragilis NCTC 93430
BCER572264 ncbi Bacillus cereus 03BB1021
BCER405917 Bacillus cereus W1
BCER315749 ncbi Bacillus cytotoxicus NVH 391-981
BCER288681 ncbi Bacillus cereus E33L1
BCER226900 ncbi Bacillus cereus ATCC 145791
BBUR224326 ncbi Borrelia burgdorferi B311
BBAC360095 ncbi Bartonella bacilliformis KC5830
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1000
BANT592021 ncbi Bacillus anthracis A02481
BANT568206 ncbi Bacillus anthracis CDC 6841
BANT261594 ncbi Bacillus anthracis Ames Ancestor1
BANT260799 ncbi Bacillus anthracis Sterne1
BAMY326423 ncbi Bacillus amyloliquefaciens FZB421
BAFZ390236 ncbi Borrelia afzelii PKo1
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP1667 Arthrobacter sp.0
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL031
APLE416269 ncbi Actinobacillus pleuropneumoniae L201
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K10
ANAE240017 Actinomyces oris MG10
AMAR329726 ncbi Acaryochloris marina MBIC110171
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43041
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C0
ACEL351607 ncbi Acidothermus cellulolyticus 11B0
ACAU438753 ncbi Azorhizobium caulinodans ORS 5710
ABUT367737 ncbi Arcobacter butzleri RM40180
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3450
AAUR290340 ncbi Arthrobacter aurescens TC10
AAEO224324 ncbi Aquifex aeolicus VF51


Names of the homologs of the genes in the group in each of these orgs
  G6616   EG10598   EG10597   EG10596   
ZMOB264203
XAUT78245
WPIP955
WPIP80849
UURE95667
UURE95664
UPAR505682
UMET351160 RCIX468
TWHI218496
TWHI203267
TVOL273116
TTHE262724 TT_C0879
TSP28240 TRQ2_0949
TROS309801 TRD_1925
TPET390874 TPET_0927
TPEN368408
TPAL243276
TMAR243274 TM_1870
TLET416591 TLET_0150
TKOD69014 TK0952
TFUS269800
TERY203124 TERY_3383
TDEN326298
TDEN243275 TDE_2685
TACI273075
STRO369723
STOK273063
STHE322159
STHE299768
STHE264199
SSUI391296
SSUI391295
SSP644076
SSP387093
SSP321332 CYB_0317
SSP321327 CYA_1265
SSP292414
SSOL273057
SSAP342451
SRUB309807
SPYO370554
SPYO370553
SPYO370552
SPYO370551
SPYO319701
SPYO293653
SPYO286636
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SPNE488221
SPNE487214
SPNE487213
SPNE171101
SPNE170187
SPNE1313
SMUT210007
SMAR399550
SLAC55218
SHAE279808
SGOR29390
SERY405948
SEPI176280
SEPI176279
SDEG203122 SDE_1339
SCO
SAVE227882
SAUR93062
SAUR93061
SAUR426430
SAUR418127
SAUR367830
SAUR359787
SAUR359786
SAUR282459
SAUR282458
SAUR273036
SAUR196620
SAUR158879
SAUR158878
SARE391037
SALA317655
SAGA211110
SAGA208435
SAGA205921
SACI330779
RXYL266117
RTYP257363
RSPH349102
RSPH349101
RSPH272943
RSP357808 ROSERS_1558
RSP101510
RSAL288705
RRUB269796
RRIC452659
RRIC392021
RPRO272947
RPOM246200
RPAL316058
RPAL316057
RPAL316056
RPAL258594
RMAS416276
RFEL315456
RDEN375451
RCON272944
RCAS383372 RCAS_3409
RCAN293613
RBEL391896
RBEL336407
RALB246199 GRAORF_2563
RAKA293614
PTOR263820
PSP312153
PSP117
PRUM264731
PPEN278197
PMOB403833 PMOB_0260
PLUT319225
PISL384616
PINT246198
PHOR70601 PH0612
PGIN242619
PFUR186497 PF1611
PDIS435591
PCAR338963 PCAR_1160
PAST100379
PARS340102
PAER178306
PACN267747
PABY272844 PAB0954
OTSU357244
OIHE221109 OB2049
OCAR504832
NWIN323098
NSP35761
NSEN222891
NPHA348780
NMUL323848
NHAM323097
NFAR247156
NARO279238
MXAN246197
MVAN350058
MTUB419947
MTUB336982
MTHE349307
MTHE187420 MTH1840
MTBRV
MTBCDC
MSYN262723
MSUC221988 MS1047
MSTA339860
MSP189918
MSP164757
MSP164756
MSME246196
MSED399549
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAZ192952
MMAR444158 MMARC6_0299
MMAR426368 MMARC7_1615
MMAR402880 MMARC5_1013
MMAR394221
MMAR368407 MEMAR_1011
MMAR267377 MMP0593
MMAG342108
MLEP272631
MLAB410358
MKAN190192 MK0218
MJAN243232 MJ_0547
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGIL350054
MGEN243273
MFLO265311
MFLA265072
MCAP340047
MBUR259564
MBOV410289
MBOV233413
MBAR269797
MAVI243243
MART243272
MAER449447 MAE_38850
MAEO419665 MAEO_0552
MACE188937
MABS561007
LXYL281090
LWEL386043 LWE1557
LSPH444177 BSPH_3953
LSAK314315 LSA0857
LREU557436
LPLA220668 LP_2315
LMON265669 LMOF2365_1563
LMON169963 LMO1544
LMES203120
LLAC272623
LLAC272622
LJOH257314
LINT363253
LINT267671 LIC_11378
LINT189518 LA2605
LINN272626 LIN1579
LHEL405566
LGAS324831
LDEL390333
LDEL321956
LCAS321967
LBRE387344 LVIS_1246
LBOR355277 LBJ_1622
LBOR355276 LBL_1840
LBIF456481 LEPBI_I0944
LBIF355278
LACI272621
KRAD266940
JSP290400
ILOI283942 IL1825
IHOS453591
HWAL362976
HSP64091
HSOM228400 HSM_1274
HSOM205914 HS_0805
HSAL478009
HPYL85963 JHP0314
HPYL357544 HPAG1_0335
HPY HP0331
HNEP81032
HMUK485914
HMAR272569 RRNAC1880
HINF71421 HI_1446
HINF374930 CGSHIEE_04830
HINF281310 NTHI1684
HHEP235279 HH_1223
HDUC233412 HD_1373
HBUT415426
HACI382638 HAC_0989
GURA351605 GURA_4109
GTHE420246 GTNG_2543
GSUL243231 GSU_3054
GMET269799 GMET_0428
GKAU235909 GK2613
GFOR411154
FSUC59374
FSP1855
FSP106370
FNUC190304 FN0176
FNOD381764 FNOD_1763
FMAG334413
FJOH376686
FALN326424
ERUM302409
ERUM254945
ELIT314225
EFAE226185
ECHA205920
ECAN269484
DVUL882
DSP255470
DSP216389
DSHI398580
DRAD243230 DR_0752
DOLE96561
DGEO319795 DGEO_0376
DETH243164
DDES207559
CVES412965
CTRA471473
CTRA471472
CTET212717 CTC_02069
CTEP194439
CSUL444179
CSP78
CRUT413404
CPRO264201
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPEL335992
CMUR243161
CMIC443906
CMIC31964
CMET456442 MBOO_1911
CMAQ397948
CKOR374847
CKLU431943 CKL_0871
CJEJ407148 C8J_0056
CJEJ360109
CJEJ354242 CJJ81176_0101
CJEJ195099 CJE_0060
CJEJ192222 CJ0063C
CJEI306537
CHUT269798
CHOM360107
CGLU196627
CFET360106 CFF8240_1509
CFEL264202
CEFF196164
CDIP257309
CCUR360105
CCON360104 CCC13826_0366
CCHL340177
CCAV227941
CBUR434922
CBUR360115
CBUR227377
CAULO
CACE272562 CAC1249
CABO218497
BXEN266265
BWEI315730 BCERKBAB4_4294
BTUR314724 BT0269
BTRI382640
BTHU412694 BALH_4031
BTHU281309 BT9727_4182
BTHE226186
BSUB BSU27990
BQUI283165
BPUM315750 BPUM_2439
BLON206672
BLIC279010 BL00641
BHER314723 BH0269
BHEN283166
BHAL272558 BH3027
BGAR290434 BG0272
BFRA295405
BFRA272559
BCER572264 BCA_4561
BCER405917 BCE_4540
BCER315749 BCER98_3163
BCER288681 BCE33L4193
BCER226900 BC_4442
BBUR224326 BB_0269
BBAC360095
BBAC264462
BANT592021 BAA_4699
BANT568206 BAMEG_4716
BANT261594 GBAA4680
BANT260799 BAS4346
BAMY326423 RBAM_025040
BAFZ390236 BAPKO_0279
AYEL322098
AURANTIMONAS
ASP1667
APLE434271 APJL_0712
APLE416269 APL_0712
APHA212042
APER272557
ANAE240017
AMAR329726 AM1_4645
AMAR234826
ALAI441768
AFUL224325 AF_0696
ADEH290397
ACEL351607
ACAU438753
ABUT367737
ABAC204669
AAUR290340
AAEO224324 AQ_877


Organism features enriched in list (features available for 347 out of the 369 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00926086492
Arrangment:Clusters 0.00012551717
Arrangment:Pairs 0.000014247112
Arrangment:Singles 0.0037865156286
Disease:Food_poisoning 0.008984099
Disease:Gastroenteritis 0.0066619313
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 0.00311131111
Disease:Wide_range_of_infections 0.00311131111
Endospores:No 2.884e-19175211
GC_Content_Range4:0-40 1.065e-13168213
GC_Content_Range4:40-60 1.112e-8101224
GC_Content_Range7:30-40 4.415e-15139166
GC_Content_Range7:50-60 2.313e-1330107
GC_Content_Range7:60-70 0.001857666134
GC_Content_Range7:70-100 0.00311131111
Genome_Size_Range5:0-2 2.977e-16133155
Genome_Size_Range5:2-4 0.0053382130197
Genome_Size_Range5:4-6 1.595e-1369184
Genome_Size_Range5:6-10 0.00004631547
Genome_Size_Range9:0-1 0.00866012227
Genome_Size_Range9:1-2 6.059e-14111128
Genome_Size_Range9:2-3 0.000375287120
Genome_Size_Range9:4-5 1.093e-63696
Genome_Size_Range9:5-6 3.470e-63388
Genome_Size_Range9:6-8 5.859e-7838
Gram_Stain:Gram_Neg 2.016e-18148333
Gram_Stain:Gram_Pos 7.355e-16129150
Habitat:Host-associated 0.0017292138206
Habitat:Multiple 0.001772791178
Motility:No 1.484e-9120151
Motility:Yes 7.393e-8128267
Optimal_temp.:- 0.0000650131257
Optimal_temp.:25-30 0.0024303519
Optimal_temp.:25-35 0.00621531314
Optimal_temp.:30-37 0.00007321818
Oxygen_Req:Anaerobic 0.003680772102
Pathogenic_in:Plant 0.0076216415
Shape:Coccus 7.788e-76882
Shape:Irregular_coccus 0.00012551717
Shape:Rod 3.295e-12167347
Shape:Sphere 0.00372091719
Shape:Spiral 0.00015473034
Temp._range:Hyperthermophilic 0.00064042123



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
GLYCOCAT-PWY (glycogen degradation I)2461730.6541
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951480.6269
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3001870.6158
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181530.5918
PWY-5918 (heme biosynthesis I)2721730.5864
PWY-4041 (γ-glutamyl cycle)2791750.5830
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)1491200.5763
PWY-1269 (CMP-KDO biosynthesis I)3251890.5740
TYRFUMCAT-PWY (tyrosine degradation I)1841360.5738
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2911770.5680
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251520.5643
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2901760.5635
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2961780.5632
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2861730.5524
GLUTATHIONESYN-PWY (glutathione biosynthesis)3391900.5514
AST-PWY (arginine degradation II (AST pathway))1201010.5399
NAGLIPASYN-PWY (lipid IVA biosynthesis)3481910.5398
PWY0-1335 (NADH to cytochrome bo oxidase electron transfer)112950.5241
PWY0-1329 (succinate to cytochrome bo oxidase electron transfer)96860.5212
PWY-5857 (ubiquinone-10 biosynthesis (prokaryotic))1831280.5170
PWY-5913 (TCA cycle variation IV)3011720.5106
PWY-5386 (methylglyoxal degradation I)3051720.5015
PWY-5855 (ubiquinone-7 biosynthesis (prokaryotic))1911280.4914
ECASYN-PWY (enterobacterial common antigen biosynthesis)1911280.4914
PWY-5148 (acyl-CoA hydrolysis)2271410.4802
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491490.4779
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491490.4779
PWY-5856 (ubiquinone-9 biosynthesis (prokaryotic))2551510.4765
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)1761190.4717
UBISYN-PWY (ubiquinol-8 biosynthesis (prokaryotic))3981950.4708
PWY0-845 (superpathway of pyridoxal 5'-phosphate biosynthesis and salvage)3291750.4693
GLUCONSUPER-PWY (D-gluconate degradation)2291400.4676
PWY-5340 (sulfate activation for sulfonation)3851900.4599
SULFATE-CYS-PWY (superpathway of sulfate assimilation and cysteine biosynthesis)3651840.4571
GALACTITOLCAT-PWY (galactitol degradation)73660.4513
PYRIDOXSYN-PWY (pyridoxal 5'-phosphate biosynthesis I)4221980.4487
REDCITCYC (TCA cycle variation II)1741150.4478
PWY-5755 (4-hydroxybenzoate biosynthesis II (bacteria and fungi))81700.4459
CHOLINE-BETAINE-ANA-PWY (choline degradation I)135970.4430
BETSYN-PWY (glycine betaine biosynthesis I (Gram-negative bacteria))138980.4398
GDPRHAMSYN-PWY (GDP-D-rhamnose biosynthesis)1561060.4386
PWY-5669 (phosphatidylethanolamine biosynthesis I)4161950.4377
PWY-5028 (histidine degradation II)130940.4375
PWY0-541 (cyclopropane fatty acid (CFA) biosynthesis)3001610.4374
LIPASYN-PWY (phospholipases)2121290.4361
PWY-3162 (tryptophan degradation V (side chain pathway))94760.4361
P601-PWY (D-camphor degradation)95760.4311
PWY0-1182 (trehalose degradation II (trehalase))70620.4268
GLUCARDEG-PWY (D-glucarate degradation I)1521020.4209
P344-PWY (acrylonitrile degradation)2101260.4201
PWY0-981 (taurine degradation IV)106800.4164
GALACTCAT-PWY (D-galactonate degradation)104790.4164
KDOSYN-PWY (KDO transfer to lipid IVA I)1801120.4058
SO4ASSIM-PWY (sulfate reduction I (assimilatory))3111600.4057
PWY-6087 (4-chlorocatechol degradation)2231290.4055
PWY0-1353 (succinate to cytochrome bd oxidase electron transfer)1781110.4045
PWY-5188 (tetrapyrrole biosynthesis I)4391960.4033
GLYOXYLATE-BYPASS (glyoxylate cycle)1691070.4026
PWY-561 (superpathway of glyoxylate cycle)1621040.4024
KDO-NAGLIPASYN-PWY (superpathway of KDO2-lipid A biosynthesis)1791110.4013
GALACTARDEG-PWY (D-galactarate degradation I)151990.4004
PWY-5084 (2-ketoglutarate dehydrogenase complex)3261640.4003



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG10598   EG10597   EG10596   
G66160.9989490.9990220.999169
EG105980.9999610.999889
EG105970.999928
EG10596



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PAIRWISE BLAST SCORES:

  G6616   EG10598   EG10597   EG10596   
G66160.0f0---
EG10598-0.0f0--
EG10597--0.0f0-
EG10596---0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10596 EG10597 EG10598 (centered at EG10597)
G6616 (centered at G6616)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G6616   EG10598   EG10597   EG10596   
116/623243/623346/623214/623
AAEO224324:0:Tyes--0-
AAVE397945:0:Tyes-210
ABAU360910:0:Tyes-210
ABOR393595:0:Tyes662012
ACRY349163:8:Tyes-012
AEHR187272:0:Tyes-012
AFER243159:0:Tyes-210
AFUL224325:0:Tyes--0-
AHYD196024:0:Tyes3012
AMAR329726:9:Tyes--0-
AMET293826:0:Tyes-10-
AORE350688:0:Tyes-01-
APLE416269:0:Tyes0---
APLE434271:0:Tno0---
ASAL382245:5:Tyes0321
ASP232721:2:Tyes-210
ASP62928:0:Tyes-012
ASP62977:0:Tyes1325012
ASP76114:2:Tyes-210
AVAR240292:3:Tyes-10-
BABO262698:0:Tno-012
BAFZ390236:2:Fyes--0-
BAMB339670:3:Tno-210
BAMB398577:3:Tno-210
BAMY326423:0:Tyes--0-
BANT260799:0:Tno--0-
BANT261594:2:Tno--0-
BANT568206:2:Tyes--0-
BANT592021:2:Tno--0-
BAPH198804:0:Tyes-012
BAPH372461:0:Tyes-012
BBRO257310:0:Tyes-210
BBUR224326:21:Fno--0-
BCAN483179:0:Tno-210
BCEN331271:2:Tno-210
BCEN331272:3:Tyes-210
BCER226900:1:Tyes--0-
BCER288681:0:Tno--0-
BCER315749:1:Tyes--0-
BCER405917:1:Tyes--0-
BCER572264:1:Tno--0-
BCIC186490:0:Tyes-210
BCLA66692:0:Tyes--01
BGAR290434:2:Fyes--0-
BHAL272558:0:Tyes--0-
BHER314723:0:Fyes--0-
BJAP224911:0:Fyes-210
BLIC279010:0:Tyes--0-
BMAL243160:1:Tno-012
BMAL320388:1:Tno-210
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