CANDIDATE ID: 969

CANDIDATE ID: 969

NUMBER OF GENES: 4
AVERAGE SCORE:    9.9900450e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- EG12111 (nlpD) (b2742)
   Products of gene:
     - EG12111-MONOMER (NlpD putative outer membrane lipoprotein)

- EG11247 (rlmD) (b2785)
   Products of gene:
     - EG11247-MONOMER (23S rRNA m5U1939 methyltransferase)
       Reactions:
        uracil1939 in 23S rRNA + S-adenosyl-L-methionine  ->  5-methyluracil1939 in 23S rRNA + S-adenosyl-L-homocysteine

- EG10689 (pcm) (b2743)
   Products of gene:
     - EG10689-MONOMER (L-isoaspartate protein carboxylmethyltransferase type II)
       Reactions:
        S-adenosyl-L-methionine + a protein L-beta-isoaspartate  ->  S-adenosyl-L-homocysteine + a protein L-beta-isoaspartate alpha-methyl ester

- EG10572 (mazG) (b2781)
   Products of gene:
     - EG10572-MONOMER (nucleoside triphosphate pyrophosphohydrolase)
     - CPLX0-7692 (nucleoside triphosphate pyrophosphohydrolase)
       Reactions:
        a nucleoside triphosphate + H2O  ->  a nucleoside monophosphate + diphosphate



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ORGANISMS CONTAINING AT LEAST 3 GENES FROM THE GROUP:

Total number of orgs: 274
Effective number of orgs (counting one per cluster within 468 clusters): 201

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317583
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329533
YPES386656 ncbi Yersinia pestis Pestoides F3
YPES377628 ncbi Yersinia pestis Nepal5163
YPES360102 ncbi Yersinia pestis Antiqua3
YPES349746 ncbi Yersinia pestis Angola3
YPES214092 ncbi Yersinia pestis CO923
YPES187410 ncbi Yersinia pestis KIM 103
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80814
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A4
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110184
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103314
XFAS405440 ncbi Xylella fastidiosa M124
XFAS183190 ncbi Xylella fastidiosa Temecula14
XFAS160492 ncbi Xylella fastidiosa 9a5c4
XCAM487884 Xanthomonas campestris pv. paulliniae4
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-104
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80044
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339134
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3064
XAUT78245 ncbi Xanthobacter autotrophicus Py24
VVUL216895 ncbi Vibrio vulnificus CMCP64
VVUL196600 ncbi Vibrio vulnificus YJ0164
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106334
VFIS312309 ncbi Vibrio fischeri ES1144
VEIS391735 ncbi Verminephrobacter eiseniae EF01-23
VCHO345073 ncbi Vibrio cholerae O3954
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169614
TTUR377629 ncbi Teredinibacter turnerae T79013
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB43
TSP28240 Thermotoga sp.3
TSP1755 Thermoanaerobacter sp.3
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332233
TPET390874 ncbi Thermotoga petrophila RKU-13
TMAR243274 ncbi Thermotoga maritima MSB83
TFUS269800 ncbi Thermobifida fusca YX3
TERY203124 ncbi Trichodesmium erythraeum IMS1013
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252593
TCRU317025 ncbi Thiomicrospira crunogena XCL-23
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen4
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT24
STHE292459 ncbi Symbiobacterium thermophilum IAM 148633
SSP94122 ncbi Shewanella sp. ANA-34
SSP84588 ncbi Synechococcus sp. WH 81023
SSP64471 ncbi Synechococcus sp. CC93113
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)4
SSP321327 ncbi Synechococcus sp. JA-3-3Ab4
SSP1148 ncbi Synechocystis sp. PCC 68033
SSP1131 Synechococcus sp. CC96053
SSON300269 ncbi Shigella sonnei Ss0464
SSED425104 ncbi Shewanella sediminis HAW-EB34
SPRO399741 ncbi Serratia proteamaculans 5683
SPEA398579 ncbi Shewanella pealeana ATCC 7003454
SONE211586 ncbi Shewanella oneidensis MR-14
SMEL266834 ncbi Sinorhizobium meliloti 10213
SMED366394 ncbi Sinorhizobium medicae WSM4193
SLOI323850 ncbi Shewanella loihica PV-44
SHIGELLA ncbi Shigella flexneri 2a str. 2457T4
SHAL458817 ncbi Shewanella halifaxensis HAW-EB44
SGLO343509 ncbi Sodalis glossinidius morsitans4
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB3
SFLE373384 ncbi Shigella flexneri 5 str. 84014
SFLE198214 ncbi Shigella flexneri 2a str. 3014
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4764
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B674
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91504
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT184
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty24
SELO269084 ncbi Synechococcus elongatus PCC 63013
SDYS300267 ncbi Shigella dysenteriae Sd1974
SDEN318161 ncbi Shewanella denitrificans OS2174
SDEG203122 ncbi Saccharophagus degradans 2-403
SBOY300268 ncbi Shigella boydii Sb2274
SBAL402882 ncbi Shewanella baltica OS1854
SBAL399599 ncbi Shewanella baltica OS1954
SACI56780 ncbi Syntrophus aciditrophicus SB4
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170293
RSP357808 ncbi Roseiflexus sp. RS-13
RSOL267608 ncbi Ralstonia solanacearum GMI10003
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111703
RPOM246200 ncbi Ruegeria pomeroyi DSS-33
RPAL316058 ncbi Rhodopseudomonas palustris HaA24
RPAL316057 ncbi Rhodopseudomonas palustris BisB54
RPAL316056 ncbi Rhodopseudomonas palustris BisB184
RPAL316055 ncbi Rhodopseudomonas palustris BisA534
RPAL258594 ncbi Rhodopseudomonas palustris CGA0094
RMET266264 ncbi Ralstonia metallidurans CH343
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38414
RFER338969 ncbi Rhodoferax ferrireducens T1183
REUT381666 ncbi Ralstonia eutropha H163
REUT264198 ncbi Ralstonia eutropha JMP1343
RETL347834 ncbi Rhizobium etli CFN 423
RCAS383372 ncbi Roseiflexus castenholzii DSM 139413
PTHE370438 ncbi Pelotomaculum thermopropionicum SI4
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30004
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a4
PSTU379731 ncbi Pseudomonas stutzeri A15014
PSP56811 Psychrobacter sp.3
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-13
PSP296591 ncbi Polaromonas sp. JS6663
PPUT76869 ncbi Pseudomonas putida GB-14
PPUT351746 ncbi Pseudomonas putida F14
PPUT160488 ncbi Pseudomonas putida KT24404
PPRO298386 ncbi Photobacterium profundum SS94
PNAP365044 ncbi Polaromonas naphthalenivorans CJ23
PMUL272843 ncbi Pasteurella multocida multocida Pm703
PMEN399739 ncbi Pseudomonas mendocina ymp4
PMAR74547 ncbi Prochlorococcus marinus MIT 93133
PLUT319225 ncbi Chlorobium luteolum DSM 2733
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO14
PING357804 ncbi Psychromonas ingrahamii 373
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1254
PFLU220664 ncbi Pseudomonas fluorescens Pf-54
PFLU216595 ncbi Pseudomonas fluorescens SBW254
PFLU205922 ncbi Pseudomonas fluorescens Pf0-14
PENT384676 ncbi Pseudomonas entomophila L484
PCRY335284 ncbi Psychrobacter cryohalolentis K53
PCAR338963 ncbi Pelobacter carbinolicus DSM 23804
PATL342610 ncbi Pseudoalteromonas atlantica T6c3
PARC259536 ncbi Psychrobacter arcticus 273-43
PAER208964 ncbi Pseudomonas aeruginosa PAO14
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA144
OCAR504832 ncbi Oligotropha carboxidovorans OM54
OANT439375 ncbi Ochrobactrum anthropi ATCC 491884
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2553
NSP103690 ncbi Nostoc sp. PCC 71203
NOCE323261 ncbi Nitrosococcus oceani ATCC 197074
NMUL323848 ncbi Nitrosospira multiformis ATCC 251963
NHAM323097 ncbi Nitrobacter hamburgensis X143
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124443
MXAN246197 ncbi Myxococcus xanthus DK 16224
MTHE264732 ncbi Moorella thermoacetica ATCC 390733
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E3
MSP409 Methylobacterium sp.3
MSP400668 ncbi Marinomonas sp. MWYL14
MSP266779 ncbi Chelativorans sp. BNC14
MPET420662 ncbi Methylibium petroleiphilum PM13
MMAR394221 ncbi Maricaulis maris MCS103
MMAG342108 ncbi Magnetospirillum magneticum AMB-14
MLOT266835 ncbi Mesorhizobium loti MAFF3030994
MFLA265072 ncbi Methylobacillus flagellatus KT3
MEXT419610 ncbi Methylobacterium extorquens PA13
MCAP243233 ncbi Methylococcus capsulatus Bath3
MAQU351348 ncbi Marinobacter aquaeolei VT84
MAER449447 ncbi Microcystis aeruginosa NIES-8433
LPNE400673 ncbi Legionella pneumophila Corby3
LPNE297246 ncbi Legionella pneumophila Paris3
LPNE297245 ncbi Legionella pneumophila Lens3
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 13
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1303
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566013
LCHO395495 ncbi Leptothrix cholodnii SP-63
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1973
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5503
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785784
JSP375286 ncbi Janthinobacterium sp. Marseille3
ILOI283942 ncbi Idiomarina loihiensis L2TR4
HSOM228400 ncbi Haemophilus somnus 23363
HSOM205914 ncbi Haemophilus somnus 129PT3
HMOD498761 ncbi Heliobacterium modesticaldum Ice13
HINF71421 ncbi Haemophilus influenzae Rd KW203
HINF281310 ncbi Haemophilus influenzae 86-028NP3
HHAL349124 ncbi Halorhodospira halophila SL14
HDUC233412 ncbi Haemophilus ducreyi 35000HP3
HCHE349521 ncbi Hahella chejuensis KCTC 23964
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237794
HARS204773 ncbi Herminiimonas arsenicoxydans3
GVIO251221 ncbi Gloeobacter violaceus PCC 74214
GURA351605 ncbi Geobacter uraniireducens Rf43
GSUL243231 ncbi Geobacter sulfurreducens PCA3
GMET269799 ncbi Geobacter metallireducens GS-153
GBET391165 ncbi Granulibacter bethesdensis CGDNIH13
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B14
ESP42895 Enterobacter sp.4
ELIT314225 ncbi Erythrobacter litoralis HTCC25943
EFER585054 ncbi Escherichia fergusonii ATCC 354694
ECOO157 ncbi Escherichia coli O157:H7 EDL9334
ECOL83334 Escherichia coli O157:H74
ECOL585397 ncbi Escherichia coli ED1a4
ECOL585057 ncbi Escherichia coli IAI394
ECOL585056 ncbi Escherichia coli UMN0264
ECOL585055 ncbi Escherichia coli 559894
ECOL585035 ncbi Escherichia coli S884
ECOL585034 ncbi Escherichia coli IAI14
ECOL481805 ncbi Escherichia coli ATCC 87394
ECOL469008 ncbi Escherichia coli BL21(DE3)4
ECOL439855 ncbi Escherichia coli SMS-3-54
ECOL413997 ncbi Escherichia coli B str. REL6064
ECOL409438 ncbi Escherichia coli SE114
ECOL405955 ncbi Escherichia coli APEC O14
ECOL364106 ncbi Escherichia coli UTI894
ECOL362663 ncbi Escherichia coli 5364
ECOL331111 ncbi Escherichia coli E24377A4
ECOL316407 ncbi Escherichia coli K-12 substr. W31104
ECOL199310 ncbi Escherichia coli CFT0734
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10434
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough3
DSHI398580 ncbi Dinoroseobacter shibae DFL 123
DRED349161 ncbi Desulfotomaculum reducens MI-13
DPSY177439 ncbi Desulfotalea psychrophila LSv543
DOLE96561 ncbi Desulfococcus oleovorans Hxd33
DHAF138119 ncbi Desulfitobacterium hafniense Y513
DARO159087 ncbi Dechloromonas aromatica RCB3
CVIO243365 ncbi Chromobacterium violaceum ATCC 124723
CTEP194439 ncbi Chlorobium tepidum TLS3
CSP78 Caulobacter sp.3
CSAL290398 ncbi Chromohalobacter salexigens DSM 30434
CPSY167879 ncbi Colwellia psychrerythraea 34H4
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE253
CPER289380 ncbi Clostridium perfringens SM1013
CPER195103 ncbi Clostridium perfringens ATCC 131243
CPER195102 ncbi Clostridium perfringens 133
CJAP155077 Cellvibrio japonicus4
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29013
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334063
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto3
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6573
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B3
CBOT441771 ncbi Clostridium botulinum A str. Hall3
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193973
CBOT36826 Clostridium botulinum A3
CAULO ncbi Caulobacter crescentus CB154
BVIE269482 ncbi Burkholderia vietnamiensis G43
BTRI382640 ncbi Bartonella tribocorum CIP 1054764
BTHA271848 ncbi Burkholderia thailandensis E2643
BSUI470137 ncbi Brucella suis ATCC 234453
BSUI204722 ncbi Brucella suis 13304
BSP376 Bradyrhizobium sp.4
BSP36773 Burkholderia sp.3
BPUM315750 ncbi Bacillus pumilus SAFR-0323
BPSE320373 ncbi Burkholderia pseudomallei 6683
BPSE320372 ncbi Burkholderia pseudomallei 1710b3
BPSE272560 ncbi Burkholderia pseudomallei K962433
BPET94624 Bordetella petrii3
BPER257313 ncbi Bordetella pertussis Tohama I3
BPAR257311 ncbi Bordetella parapertussis 128223
BOVI236 Brucella ovis4
BMEL359391 ncbi Brucella melitensis biovar Abortus 23084
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M4
BMAL320389 ncbi Burkholderia mallei NCTC 102473
BMAL320388 ncbi Burkholderia mallei SAVP13
BMAL243160 ncbi Burkholderia mallei ATCC 233443
BLIC279010 ncbi Bacillus licheniformis ATCC 145803
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1104
BHEN283166 ncbi Bartonella henselae Houston-13
BFRA295405 ncbi Bacteroides fragilis YCH463
BFRA272559 ncbi Bacteroides fragilis NCTC 93433
BCEN331272 ncbi Burkholderia cenocepacia HI24243
BCEN331271 ncbi Burkholderia cenocepacia AU 10543
BCAN483179 ncbi Brucella canis ATCC 233654
BBRO257310 ncbi Bordetella bronchiseptica RB503
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1004
BAMB398577 ncbi Burkholderia ambifaria MC40-63
BAMB339670 ncbi Burkholderia ambifaria AMMD3
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9414
AVAR240292 ncbi Anabaena variabilis ATCC 294133
ASP76114 ncbi Aromatoleum aromaticum EbN13
ASP62977 ncbi Acinetobacter sp. ADP13
ASP62928 ncbi Azoarcus sp. BH723
ASP232721 ncbi Acidovorax sp. JS423
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4494
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL033
APLE416269 ncbi Actinobacillus pleuropneumoniae L203
AORE350688 ncbi Alkaliphilus oremlandii OhILAs3
AMET293826 ncbi Alkaliphilus metalliredigens QYMF3
AMAR329726 ncbi Acaryochloris marina MBIC110173
AHYD196024 Aeromonas hydrophila dhakensis4
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-14
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C3
ACRY349163 ncbi Acidiphilium cryptum JF-53
ACAU438753 ncbi Azorhizobium caulinodans ORS 5714
ABOR393595 ncbi Alcanivorax borkumensis SK24
ABAU360910 ncbi Bordetella avium 197N3
AAVE397945 ncbi Acidovorax citrulli AAC00-13


Names of the homologs of the genes in the group in each of these orgs
  EG12111   EG11247   EG10689   EG10572   
YPSE349747 YPSIP31758_3294YPSIP31758_3295YPSIP31758_3318
YPSE273123 YPTB0775YPTB0774YPTB0753
YPES386656 YPDSF_3004YPDSF_3003YPDSF_2981
YPES377628 YPN_0737YPN_0736YPN_0714
YPES360102 YPA_2787YPA_2786YPA_2876
YPES349746 YPANGOLA_A0959YPANGOLA_A0960YPANGOLA_A0982
YPES214092 YPO3356YPO3357YPO3378
YPES187410 Y0833Y0832Y0812
YENT393305 YE0774YE0743YE0773YE0745
XORY360094 XOOORF_1714XOOORF_3142XOOORF_1712XOOORF_3214
XORY342109 XOO2805XOO1755XOO2807XOO1693
XORY291331 XOO2953XOO1859XOO2955XOO1790
XFAS405440 XFASM12_1995XFASM12_1527XFASM12_1993XFASM12_0158
XFAS183190 PD_1820PD_1385PD_1818PD_0152
XFAS160492 XF0855XF2358XF0857XF0186
XCAM487884 XCC-B100_2550XCC-B100_3026XCC-B100_2552XCC-B100_1272
XCAM316273 XCAORF_1945XCAORF_1532XCAORF_1943XCAORF_3260
XCAM314565 XC_2522XC_2964XC_2524XC_1228
XCAM190485 XCC1709XCC1277XCC1707XCC2881
XAXO190486 XAC1728XAC1329XAC1726XAC3065
XAUT78245 XAUT_4412XAUT_4164XAUT_4414XAUT_4391
VVUL216895 VV1_1587VV1_1574VV1_1586VV1_1577
VVUL196600 VV2810VV2822VV2811VV2820
VPAR223926 VP2554VP2566VP2555VP2563
VFIS312309 VF2068VF2081VF2069VF2078
VEIS391735 VEIS_0088VEIS_3067VEIS_0089
VCHO345073 VC0395_A0061VC0395_A2030VC0395_A0060VC0395_A2028
VCHO VC0533VC2452VC0532VC2450
TTUR377629 TERTU_2831TERTU_2833TERTU_1194
TTEN273068 TTE2691TTE1812TTE2454
TSP28240 TRQ2_1722TRQ2_0224TRQ2_0014
TSP1755 TETH514_1048TETH514_1197TETH514_0686
TPSE340099 TETH39_0061TETH39_0686TETH39_0248
TPET390874 TPET_1649TPET_0226TPET_0014
TMAR243274 TM_1094TM_0704TM_0913
TFUS269800 TFU_1927TFU_1808TFU_0426
TERY203124 TERY_0237TERY_4802TERY_5034
TDEN292415 TBD_0837TBD_0970TBD_0836
TCRU317025 TCR_1254TCR_2194TCR_1069
SWOL335541 SWOL_2406SWOL_2225SWOL_2438SWOL_0082
STYP99287 STM2925STM2957STM2926STM2954
STHE292459 STH68STH2818STH3231
SSP94122 SHEWANA3_1123SHEWANA3_1110SHEWANA3_1122SHEWANA3_1114
SSP84588 SYNW1214OR3392SYNW1228OR3380SYNW2418OR1034
SSP64471 GSYN1429GSYN1444GSYN3015
SSP321332 CYB_1820CYB_0500CYB_2184CYB_2901
SSP321327 CYA_1895CYA_0025CYA_0908CYA_2009
SSP1148 SLR0993SLL1967SLL1005
SSP1131 SYNCC9605_1326SYNCC9605_1340SYNCC9605_2588
SSON300269 SSO_2890SSO_2942SSO_2891SSO_2938
SSED425104 SSED_1297SSED_1286SSED_1296SSED_1288
SPRO399741 SPRO_0831SPRO_0830SPRO_0793
SPEA398579 SPEA_1192SPEA_1181SPEA_1191SPEA_1183
SONE211586 SO_3433SO_3456SO_3434SO_3442
SMEL266834 SMC02060SMB20088SMC01051
SMED366394 SMED_1171SMED_4048SMED_1097
SLOI323850 SHEW_1212SHEW_1201SHEW_1211SHEW_1203
SHIGELLA NLPDYGCAPCMMAZG
SHAL458817 SHAL_1229SHAL_1218SHAL_1228SHAL_1220
SGLO343509 SG0530SG0509SG0529SG0511
SFUM335543 SFUM_0289SFUM_2480SFUM_2161
SFLE373384 SFV_2756SFV_2672SFV_2755SFV_2674
SFLE198214 AAN44254.1AAN44286.1AAN44255.1AAN44284.1
SENT454169 SEHA_C3114SEHA_C3163SEHA_C3116SEHA_C3151
SENT321314 SCH_2857SCH_2897SCH_2858SCH_2888
SENT295319 SPA2781SPA2822SPA2782SPA2811
SENT220341 STY3050STY3095STY3051STY3083
SENT209261 T2826T2866T2827T2855
SELO269084 SYC0925_CSYC1272_CSYC2479_D
SDYS300267 SDY_2941SDY_3002SDY_2942SDY_2998
SDEN318161 SDEN_1203SDEN_1192SDEN_1202SDEN_1194
SDEG203122 SDE_1252SDE_1250SDE_2237
SBOY300268 SBO_2778SBO_2666SBO_2777SBO_2662
SBAL402882 SHEW185_3129SHEW185_3145SHEW185_3130SHEW185_3138
SBAL399599 SBAL195_3272SBAL195_3290SBAL195_3273SBAL195_3281
SACI56780 SYN_00999SYN_01023SYN_01000SYN_00041
RSPH349101 RSPH17029_2863RSPH17029_1204RSPH17029_1556
RSP357808 ROSERS_0352ROSERS_3811ROSERS_1334
RSOL267608 RSC1206RSC1209RSC1205
RRUB269796 RRU_A1767RRU_A1768RRU_A1690
RPOM246200 SPO_0029SPO_2687SPO_2469
RPAL316058 RPB_2736RPB_4463RPB_2737RPB_2710
RPAL316057 RPD_2781RPD_4309RPD_2782RPD_2752
RPAL316056 RPC_2522RPC_1145RPC_2521RPC_2752
RPAL316055 RPE_2706RPE_1062RPE_2705RPE_2885
RPAL258594 RPA2837RPA0948RPA2838RPA2811
RMET266264 RMET_2116RMET_2112RMET_2117
RLEG216596 RL2052RL0969PRL90108RL2286
RFER338969 RFER_2780RFER_2778RFER_2781
REUT381666 H16_A2374H16_A2370H16_A1622
REUT264198 REUT_A2096REUT_A2092REUT_A2097
RETL347834 RHE_CH01829RHE_PB00041RHE_CH01956
RCAS383372 RCAS_0552RCAS_0989RCAS_1621
PTHE370438 PTH_2862PTH_1518PTH_2678PTH_0120
PSYR223283 PSPTO_1564PSPTO_1693PSPTO_1563PSPTO_1695
PSYR205918 PSYR_1373PSYR_3696PSYR_1372PSYR_3694
PSTU379731 PST_1571PST_2670PST_1569PST_2668
PSP56811 PSYCPRWF_1756PSYCPRWF_0384PSYCPRWF_0276
PSP312153 PNUC_1297PNUC_1295PNUC_1298
PSP296591 BPRO_3059BPRO_3057BPRO_4278
PPUT76869 PPUTGB1_1176PPUTGB1_1256PPUTGB1_1175PPUTGB1_1258
PPUT351746 PPUT_4155PPUT_4063PPUT_4156PPUT_4061
PPUT160488 PP_1622PP_1655PP_1621PP_1657
PPRO298386 PBPRA3072PBPRA3083PBPRA3073PBPRA3081
PNAP365044 PNAP_2577PNAP_2576PNAP_2578
PMUL272843 PM1614PM1866PM1285
PMEN399739 PMEN_3021PMEN_1734PMEN_3023PMEN_1736
PMAR74547 PMT0751PMT0737PMT2211
PLUT319225 PLUT_2126PLUT_1923PLUT_2027
PLUM243265 PLU0718PLU0909PLU0717PLU0911
PING357804 PING_0676PING_0529PING_0665
PHAL326442 PSHAA0690PSHAA0738PSHAA0688PSHAA0740
PFLU220664 PFL_1206PFL_4447PFL_1205PFL_4445
PFLU216595 PFLU1301PFLU4506PFLU1300PFLU4504
PFLU205922 PFL_1131PFL_4218PFL_1130PFL_4216
PENT384676 PSEEN4190PSEEN1363PSEEN4191PSEEN1365
PCRY335284 PCRYO_0661PCRYO_0378PCRYO_0121
PCAR338963 PCAR_1429PCAR_1551PCAR_1427PCAR_1432
PATL342610 PATL_3863PATL_3861PATL_3706
PARC259536 PSYC_0690PSYC_0344PSYC_0112
PAER208964 PA3623PA0933PA3624PA0935
PAER208963 PA14_17470PA14_52190PA14_17460PA14_52160
OCAR504832 OCAR_6260OCAR_6897OCAR_6261OCAR_6102
OANT439375 OANT_2339OANT_0549OANT_4285OANT_2150
NWIN323098 NWI_1772NWI_1773NWI_1452
NSP103690 ALR3353ALR3654ALR0512
NOCE323261 NOC_0792NOC_0801NOC_0790NOC_0869
NMUL323848 NMUL_A0497NMUL_A2216NMUL_A0496
NHAM323097 NHAM_1795NHAM_1929NHAM_1845
NARO279238 SARO_0849SARO_1787SARO_1933
MXAN246197 MXAN_4449MXAN_3787MXAN_3407MXAN_4741
MTHE264732 MOTH_2401MOTH_1912MOTH_0084
MSUC221988 MS2268MS0240MS0351
MSP409 M446_6574M446_6575M446_5947
MSP400668 MMWYL1_1307MMWYL1_1252MMWYL1_1305MMWYL1_1254
MSP266779 MESO_1800MESO_0737MESO_1801MESO_1611
MPET420662 MPE_A1254MPE_A1256MPE_A1253
MMAR394221 MMAR10_1901MMAR10_1903MMAR10_1450
MMAG342108 AMB2518AMB0328AMB2519AMB2392
MLOT266835 MLL1077MLR7480MLL1078MLL0404
MFLA265072 MFLA_1826MFLA_1851MFLA_1825
MEXT419610 MEXT_4231MEXT_4262MEXT_3913
MCAP243233 MCA_1898MCA_2419MCA_0046
MAQU351348 MAQU_0929MAQU_2239MAQU_0927MAQU_2237
MAER449447 MAE_24900MAE_35680MAE_48990
LPNE400673 LPC_0708LPC_0871LPC_2594
LPNE297246 LPP1246LPP1412LPP0755
LPNE297245 LPL1246LPL1572LPL0737
LPNE272624 LPG1283LPG1456LPG0700
LINT267671 LIC_12622LIC_12550LIC_13240
LINT189518 LA1043LA1131LA4062
LCHO395495 LCHO_1920LCHO_1919LCHO_1921
LBOR355277 LBJ_0285LBJ_2677LBJ_0214
LBOR355276 LBL_2791LBL_0403LBL_2868
KPNE272620 GKPORF_B2435GKPORF_B2461GKPORF_B2436GKPORF_B2459
JSP375286 MMA_2135MMA_2133MMA_2136
ILOI283942 IL0746IL0805IL0748IL0803
HSOM228400 HSM_0499HSM_1985HSM_1055
HSOM205914 HS_1502HS_0094HS_1122
HMOD498761 HM1_1080HM1_2983HM1_0717
HINF71421 HI_0706HI_0333HI_0460
HINF281310 NTHI0830NTHI0451NTHI0591
HHAL349124 HHAL_1428HHAL_0028HHAL_1430HHAL_0129
HDUC233412 HD_0755HD_1765HD_1468
HCHE349521 HCH_01876HCH_01806HCH_01874HCH_01808
HAUR316274 HAUR_4026HAUR_0615HAUR_1925HAUR_0849
HARS204773 HEAR1256HEAR1258HEAR1255
GVIO251221 GLL1142GLL3134GLR1699GLL2594
GURA351605 GURA_2144GURA_3331GURA_3259
GSUL243231 GSU_1452GSU_1524GSU_1174
GMET269799 GMET_1971GMET_1420GMET_2399
GBET391165 GBCGDNIH1_1318GBCGDNIH1_0514GBCGDNIH1_1126
FNOD381764 FNOD_1658FNOD_0340FNOD_0742FNOD_1015
ESP42895 ENT638_3213ENT638_3237ENT638_3214ENT638_3235
ELIT314225 ELI_00600ELI_06895ELI_06250
EFER585054 EFER_0327EFER_0279EFER_0325EFER_0283
ECOO157 NLPDYGCAPCMMAZG
ECOL83334 ECS3596ECS3645ECS3597ECS3641
ECOL585397 ECED1_3197ECED1_3238ECED1_3199ECED1_3234
ECOL585057 ECIAI39_2930ECIAI39_3204ECIAI39_2932ECIAI39_3200
ECOL585056 ECUMN_3065ECUMN_3114ECUMN_3067ECUMN_3112
ECOL585055 EC55989_3013EC55989_3060EC55989_3015EC55989_3056
ECOL585035 ECS88_3011ECS88_3053ECS88_3013ECS88_3049
ECOL585034 ECIAI1_2842ECIAI1_2893ECIAI1_2844ECIAI1_2889
ECOL481805 ECOLC_0970ECOLC_0927ECOLC_0969ECOLC_0931
ECOL469008 ECBD_0982ECBD_0944ECBD_0981ECBD_0948
ECOL439855 ECSMS35_2867ECSMS35_2923ECSMS35_2868ECSMS35_2919
ECOL413997 ECB_02592ECB_02630ECB_02593ECB_02626
ECOL409438 ECSE_2994ECSE_3043ECSE_2995ECSE_3039
ECOL405955 APECO1_3781APECO1_3746APECO1_3780APECO1_3749
ECOL364106 UTI89_C3112UTI89_C3155UTI89_C3114UTI89_C3150
ECOL362663 ECP_2723ECP_2766ECP_2725ECP_2762
ECOL331111 ECE24377A_3043ECE24377A_3089ECE24377A_3044ECE24377A_3085
ECOL316407 ECK2737:JW2712:B2742ECK2779:JW2756:B2785ECK2738:JW2713:B2743ECK2775:JW2752:B2781
ECOL199310 C3308C3348C3310C3346
ECAR218491 ECA3531ECA3570ECA3532ECA3568
DVUL882 DVU_0924DVU_1849DVU_1186
DSHI398580 DSHI_3492DSHI_2137DSHI_1160
DRED349161 DRED_3173DRED_2261DRED_0114
DPSY177439 DP1443DP0275DP2594
DOLE96561 DOLE_1585DOLE_2742DOLE_0781
DHAF138119 DSY4936DSY3765DSY0192
DARO159087 DARO_2522DARO_0851DARO_2523
CVIO243365 CV_3681CV_1932CV_3680
CTEP194439 CT_0009CT_0202CT_2086
CSP78 CAUL_3112CAUL_3113CAUL_2613
CSAL290398 CSAL_2632CSAL_1637CSAL_2634CSAL_1639
CPSY167879 CPS_1078CPS_4116CPS_1076CPS_4114
CPRO264201 PC0248PC0856PC0717
CPER289380 CPR_2621CPR_0348CPR_2489
CPER195103 CPF_2938CPF_0357CPF_2803
CPER195102 CPE2611CPE0367CPE2480
CJAP155077 CJA_2219CJA_2576CJA_2220CJA_2574
CHYD246194 CHY_2625CHY_1112CHY_0204
CHUT269798 CHU_2518CHU_1928CHU_3483
CBOT536232 CLM_4099CLM_3255CLM_4027
CBOT515621 CLJ_B3936CLJ_B3672CLJ_B3865
CBOT508765 CLL_A3558CLL_A3330CLL_A0156
CBOT441771 CLC_3585CLC_3312CLC_3513
CBOT441770 CLB_3687CLB_3425CLB_3616
CBOT36826 CBO3606CBO3369CBO3535
CAULO CC1996CC1326CC1997CC1747
BVIE269482 BCEP1808_1748BCEP1808_1744BCEP1808_1749
BTRI382640 BT_0846BT_0651BT_0845BT_1331
BTHA271848 BTH_I2752BTH_I2229BTH_I2224
BSUI470137 BSUIS_A0926BSUIS_A0464BSUIS_A0925
BSUI204722 BR_0888BR_0438BR_0887BR_1067
BSP376 BRADO4039BRADO2158BRADO4040BRADO3851
BSP36773 BCEP18194_A4460BCEP18194_A5118BCEP18194_A5123
BPUM315750 BPUM_2040BPUM_0651BPUM_0042
BPSE320373 BURPS668_1511BURPS668_2195BURPS668_2200
BPSE320372 BURPS1710B_A1840BURPS1710B_A2562BURPS1710B_A2568
BPSE272560 BPSL1381BPSL1508BPSL1503
BPET94624 BPET2547BPET2543BPET2548
BPER257313 BP1721BP1725BP1720
BPAR257311 BPP3055BPP3051BPP3056
BOVI236 GBOORF0915GBOORF0467GBOORF0909GBOORF1067
BMEL359391 BAB1_0907BAB1_0464BAB1_0906BAB1_1089
BMEL224914 BMEI1079BMEI1496BMEI1080BMEI0920
BMAL320389 BMA10247_0602BMA10247_1112BMA10247_1118
BMAL320388 BMASAVP1_A1320BMASAVP1_A1840BMASAVP1_A1846
BMAL243160 BMA_0803BMA_1350BMA_1356
BLIC279010 BL00648BL02629BL00512
BJAP224911 BLL4743BLL2648BLL4744BLL4494
BHEN283166 BH05630BH05620BH07410
BFRA295405 BF3700BF2539BF1048
BFRA272559 BF3493BF2568BF0964
BCEN331272 BCEN2424_1821BCEN2424_1817BCEN2424_1822
BCEN331271 BCEN_6258BCEN_6262BCEN_6257
BCAN483179 BCAN_A0902BCAN_A0442BCAN_A0901BCAN_A1082
BBRO257310 BB3018BB3014BB3019
BBAC264462 BD2006BD3828BD2618BD1485
BAMB398577 BAMMC406_1228BAMMC406_1728BAMMC406_1733
BAMB339670 BAMB_4030BAMB_1755BAMB_1760
BABO262698 BRUAB1_0900BRUAB1_0460BRUAB1_0899BRUAB1_1072
AVAR240292 AVA_3195AVA_3634AVA_2914
ASP76114 EBA779EBA771EBA781
ASP62977 ACIAD1229ACIAD3069ACIAD3065
ASP62928 AZO1089AZO1100AZO1088
ASP232721 AJS_1162AJS_2413AJS_1161
ASAL382245 ASA_3467ASA_3479ASA_3469ASA_3477
APLE434271 APJL_1978APJL_0327APJL_0624
APLE416269 APL_1930APL_0312APL_0630
AORE350688 CLOS_2792CLOS_0590CLOS_2638
AMET293826 AMET_4761AMET_4060AMET_0164
AMAR329726 AM1_1508AM1_5265AM1_4247
AHYD196024 AHA_0829AHA_0817AHA_0827AHA_0819
AEHR187272 MLG_1826MLG_1354MLG_1828MLG_1457
ADEH290397 ADEH_0752ADEH_1726ADEH_2724
ACRY349163 ACRY_0533ACRY_1780ACRY_1759
ACAU438753 AZC_1731AZC_3107AZC_1728AZC_1656
ABOR393595 ABO_1171ABO_1624ABO_1169ABO_1622
ABAU360910 BAV1979BAV1976BAV1980
AAVE397945 AAVE_1416AAVE_3318AAVE_1415


Organism features enriched in list (features available for 258 out of the 274 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00125342892
Arrangment:Singles 0.0036838141286
Disease:Bubonic_plague 0.007269266
Disease:Dysentery 0.007269266
Disease:Gastroenteritis 0.00283991113
Endospores:No 5.112e-1451211
GC_Content_Range4:0-40 5.675e-3031213
GC_Content_Range4:40-60 1.396e-10136224
GC_Content_Range4:60-100 1.246e-791145
GC_Content_Range7:0-30 0.0000328847
GC_Content_Range7:30-40 1.851e-2223166
GC_Content_Range7:50-60 2.554e-1178107
GC_Content_Range7:60-70 7.350e-1090134
Genome_Size_Range5:0-2 7.324e-377155
Genome_Size_Range5:4-6 1.741e-21134184
Genome_Size_Range5:6-10 9.329e-63547
Genome_Size_Range9:1-2 1.308e-277128
Genome_Size_Range9:2-3 0.000012133120
Genome_Size_Range9:3-4 0.00012144977
Genome_Size_Range9:4-5 6.232e-96896
Genome_Size_Range9:5-6 1.817e-106688
Genome_Size_Range9:6-8 1.098e-63138
Gram_Stain:Gram_Neg 2.944e-27210333
Gram_Stain:Gram_Pos 2.602e-2416150
Habitat:Aquatic 0.00767545091
Habitat:Host-associated 0.000449373206
Habitat:Multiple 0.004154692178
Motility:No 6.665e-1626151
Motility:Yes 2.102e-15165267
Optimal_temp.:25-30 0.00003981719
Optimal_temp.:28-30 0.003174877
Oxygen_Req:Facultative 0.0051387102201
Shape:Coccus 1.400e-101182
Shape:Rod 8.614e-20206347
Shape:Sphere 0.0066732319
Temp._range:Hyperthermophilic 0.0045384423
Temp._range:Psychrophilic 0.000601599



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 247
Effective number of orgs (counting one per cluster within 468 clusters): 192

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi1
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I1
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTHE300852 ncbi Thermus thermophilus HB81
TTHE262724 ncbi Thermus thermophilus HB271
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols1
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12511
TDEN243275 ncbi Treponema denticola ATCC 354051
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
STRO369723 ncbi Salinispora tropica CNB-4401
STOK273063 ncbi Sulfolobus tokodaii 71
STHE322159 ncbi Streptococcus thermophilus LMD-91
STHE299768 ncbi Streptococcus thermophilus CNRZ10661
STHE264199 ncbi Streptococcus thermophilus LMG 183111
SSUI391296 ncbi Streptococcus suis 98HAH330
SSUI391295 ncbi Streptococcus suis 05ZYH330
SSP387093 ncbi Sulfurovum sp. NBC37-11
SSOL273057 ncbi Sulfolobus solfataricus P21
SPYO370554 ncbi Streptococcus pyogenes MGAS107501
SPYO370553 ncbi Streptococcus pyogenes MGAS20961
SPYO370552 ncbi Streptococcus pyogenes MGAS102701
SPYO370551 ncbi Streptococcus pyogenes MGAS94291
SPYO319701 ncbi Streptococcus pyogenes MGAS61801
SPYO293653 ncbi Streptococcus pyogenes MGAS50051
SPYO286636 ncbi Streptococcus pyogenes MGAS103941
SPYO198466 ncbi Streptococcus pyogenes MGAS3151
SPYO193567 ncbi Streptococcus pyogenes SSI-11
SPYO186103 ncbi Streptococcus pyogenes MGAS82321
SPYO160490 ncbi Streptococcus pyogenes M1 GAS1
SPNE488221 ncbi Streptococcus pneumoniae 705850
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-60
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-140
SPNE171101 ncbi Streptococcus pneumoniae R60
SPNE170187 ncbi Streptococcus pneumoniae G540
SPNE1313 Streptococcus pneumoniae0
SMUT210007 ncbi Streptococcus mutans UA1591
SMAR399550 ncbi Staphylothermus marinus F11
SGOR29390 Streptococcus gordonii Challis0
SAVE227882 ncbi Streptomyces avermitilis MA-46801
SAGA211110 ncbi Streptococcus agalactiae NEM3161
SAGA208435 ncbi Streptococcus agalactiae 2603V/R1
SAGA205921 ncbi Streptococcus agalactiae A9091
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6391
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99411
RTYP257363 ncbi Rickettsia typhi Wilmington0
RSP101510 ncbi Rhodococcus jostii RHA11
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332091
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RMAS416276 ncbi Rickettsia massiliae MTU50
RFEL315456 ncbi Rickettsia felis URRWXCal20
RCON272944 ncbi Rickettsia conorii Malish 70
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RALB246199 Ruminococcus albus 81
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97900
PSP117 Pirellula sp.1
PRUM264731 ncbi Prevotella ruminicola 231
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257451
PMAR93060 ncbi Prochlorococcus marinus MIT 92151
PMAR74546 ncbi Prochlorococcus marinus MIT 93121
PMAR59920 ncbi Prochlorococcus marinus NATL2A1
PMAR167555 ncbi Prochlorococcus marinus NATL1A1
PMAR167546 ncbi Prochlorococcus marinus MIT 93011
PMAR167542 ncbi Prochlorococcus marinus MIT 95151
PMAR167540 Prochlorococcus marinus pastoris MED4ax1
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13751
PMAR146891 ncbi Prochlorococcus marinus AS96011
PISL384616 ncbi Pyrobaculum islandicum DSM 41841
PHOR70601 ncbi Pyrococcus horikoshii OT31
PFUR186497 ncbi Pyrococcus furiosus DSM 36381
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135141
PAER178306 ncbi Pyrobaculum aerophilum IM21
PACN267747 ncbi Propionibacterium acnes KPA1712021
PABY272844 ncbi Pyrococcus abyssi GE51
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
NSP387092 ncbi Nitratiruptor sp. SB155-21
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21601
NFAR247156 ncbi Nocardia farcinica IFM 101521
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-11
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra1
MTUB336982 ncbi Mycobacterium tuberculosis F111
MTHE349307 ncbi Methanosaeta thermophila PT1
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H1
MTBRV ncbi Mycobacterium tuberculosis H37Rv1
MTBCDC ncbi Mycobacterium tuberculosis CDC15511
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSP189918 ncbi Mycobacterium sp. KMS1
MSP164757 ncbi Mycobacterium sp. JLS1
MSP164756 ncbi Mycobacterium sp. MCS1
MSME246196 ncbi Mycobacterium smegmatis MC2 1551
MSED399549 ncbi Metallosphaera sedula DSM 53481
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go11
MMAR444158 ncbi Methanococcus maripaludis C61
MMAR426368 ncbi Methanococcus maripaludis C71
MMAR402880 ncbi Methanococcus maripaludis C51
MMAR368407 ncbi Methanoculleus marisnigri JR11
MMAR267377 ncbi Methanococcus maripaludis S21
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV191
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26611
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-11
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBUR259564 ncbi Methanococcoides burtonii DSM 62421
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P21
MBOV233413 ncbi Mycobacterium bovis AF2122/971
MBAR269797 ncbi Methanosarcina barkeri Fusaro1
MAVI243243 ncbi Mycobacterium avium 1041
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAEO419665 ncbi Methanococcus aeolicus Nankai-31
MACE188937 ncbi Methanosarcina acetivorans C2A1
MABS561007 ncbi Mycobacterium abscessus ATCC 199771
LXYL281090 ncbi Leifsonia xyli xyli CTCB071
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53341
LSAK314315 ncbi Lactobacillus sakei sakei 23K1
LREU557436 ncbi Lactobacillus reuteri DSM 200161
LPLA220668 ncbi Lactobacillus plantarum WCFS11
LMON265669 ncbi Listeria monocytogenes 4b F23651
LMON169963 ncbi Listeria monocytogenes EGD-e1
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82931
LLAC272623 ncbi Lactococcus lactis lactis Il14030
LLAC272622 ncbi Lactococcus lactis cremoris SK110
LJOH257314 ncbi Lactobacillus johnsonii NCC 5331
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-001
LINN272626 ncbi Listeria innocua Clip112621
LHEL405566 ncbi Lactobacillus helveticus DPC 45711
LGAS324831 ncbi Lactobacillus gasseri ATCC 333231
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118421
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3651
LCAS321967 ncbi Lactobacillus casei ATCC 3341
LBRE387344 ncbi Lactobacillus brevis ATCC 3671
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)1
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)1
LACI272621 ncbi Lactobacillus acidophilus NCFM1
KRAD266940 ncbi Kineococcus radiotolerans SRS302161
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I1
HWAL362976 ncbi Haloquadratum walsbyi DSM 167901
HSP64091 ncbi Halobacterium sp. NRC-10
HSAL478009 ncbi Halobacterium salinarum R10
HPYL85963 ncbi Helicobacter pylori J991
HPYL357544 ncbi Helicobacter pylori HPAG11
HPY ncbi Helicobacter pylori 266951
HMUK485914 ncbi Halomicrobium mukohataei DSM 122861
HMAR272569 ncbi Haloarcula marismortui ATCC 430491
HHEP235279 ncbi Helicobacter hepaticus ATCC 514491
HBUT415426 ncbi Hyperthermus butylicus DSM 54561
HACI382638 ncbi Helicobacter acinonychis Sheeba1
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-001
FTUL418136 ncbi Francisella tularensis tularensis WY96-34181
FTUL401614 ncbi Francisella novicida U1121
FTUL393115 ncbi Francisella tularensis tularensis FSC1981
FTUL393011 ncbi Francisella tularensis holarctica OSU181
FTUL351581 Francisella tularensis holarctica FSC2001
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S851
FSP1855 Frankia sp. EAN1pec1
FRANT ncbi Francisella tularensis tularensis SCHU S41
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250171
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255860
FMAG334413 ncbi Finegoldia magna ATCC 293281
FALN326424 ncbi Frankia alni ACN14a1
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
EFAE226185 ncbi Enterococcus faecalis V5831
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DSP255470 ncbi Dehalococcoides sp. CBDB11
DSP216389 ncbi Dehalococcoides sp. BAV11
DGEO319795 ncbi Deinococcus geothermalis DSM 113001
DETH243164 ncbi Dehalococcoides ethenogenes 1951
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis1
CTRA471472 ncbi Chlamydia trachomatis 434/Bu1
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)1
CPNE182082 ncbi Chlamydophila pneumoniae TW-1831
CPNE138677 ncbi Chlamydophila pneumoniae J1381
CPNE115713 ncbi Chlamydophila pneumoniae CWL0291
CPNE115711 ncbi Chlamydophila pneumoniae AR391
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10620
CMUR243161 ncbi Chlamydia muridarum Nigg1
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3821
CMIC31964 ncbi Clavibacter michiganensis sepedonicus1
CMET456442 ncbi Candidatus Methanoregula boonei 6A81
CMAQ397948 ncbi Caldivirga maquilingensis IC-1671
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF81
CJEJ407148 ncbi Campylobacter jejuni jejuni 811161
CJEJ360109 ncbi Campylobacter jejuni doylei 269.971
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1761
CJEJ195099 ncbi Campylobacter jejuni RM12211
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111681
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3811
CFET360106 ncbi Campylobacter fetus fetus 82-401
CFEL264202 ncbi Chlamydophila felis Fe/C-561
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131291
CCUR360105 ncbi Campylobacter curvus 525.921
CCON360104 ncbi Campylobacter concisus 138261
CCAV227941 ncbi Chlamydophila caviae GPIC1
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1111
CBUR360115 ncbi Coxiella burnetii RSA 3311
CBUR227377 ncbi Coxiella burnetii RSA 4931
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN1
CBLO203907 ncbi Candidatus Blochmannia floridanus1
CABO218497 ncbi Chlamydophila abortus S26/31
BTUR314724 ncbi Borrelia turicatae 91E1350
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)1
BLON206672 ncbi Bifidobacterium longum NCC27051
BHER314723 ncbi Borrelia hermsii DAH0
BGAR290434 ncbi Borrelia garinii PBi0
BCIC186490 Candidatus Baumannia cicadellinicola1
BBUR224326 ncbi Borrelia burgdorferi B310
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)0
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP1667 Arthrobacter sp.1
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K11
ANAE240017 Actinomyces oris MG10
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43041
ABUT367737 ncbi Arcobacter butzleri RM40180
AAUR290340 ncbi Arthrobacter aurescens TC11


Names of the homologs of the genes in the group in each of these orgs
  EG12111   EG11247   EG10689   EG10572   
WPIP955
WPIP80849 WB_0930
UURE95667
UURE95664
UPAR505682
UMET351160 RCIX2158
TWHI218496
TWHI203267
TVOL273116
TTHE300852 TTHA1946
TTHE262724 TT_C1583
TPEN368408
TPAL243276 TP_0778
TDEN326298 TMDEN_0015
TDEN243275 TDE_2286
TACI273075
STRO369723 STROP_0886
STOK273063 ST0182
STHE322159 STER_0423
STHE299768 STR0376
STHE264199 STU0376
SSUI391296
SSUI391295
SSP387093 SUN_2400
SSOL273057 SSO2599
SPYO370554 MGAS10750_SPY1428
SPYO370553 MGAS2096_SPY1160
SPYO370552 MGAS10270_SPY1435
SPYO370551 MGAS9429_SPY1313
SPYO319701 M28_SPY1360
SPYO293653 M5005_SPY1319
SPYO286636 M6_SPY1337
SPYO198466 SPYM3_1299
SPYO193567 SPS0562
SPYO186103 SPYM18_1360
SPYO160490 SPY1606
SPNE488221
SPNE487214
SPNE487213
SPNE171101
SPNE170187
SPNE1313
SMUT210007 SMU_1779C
SMAR399550 SMAR_0720
SGOR29390
SAVE227882 SAV3537
SAGA211110 GBS0448
SAGA208435 SAG_0413
SAGA205921 SAK_0494
SACI330779 SACI_0434
RXYL266117 RXYL_1185
RTYP257363
RSP101510 RHA1_RO05761
RSAL288705 RSAL33209_0328
RRIC452659
RRIC392021
RPRO272947
RMAS416276
RFEL315456
RCON272944
RCAN293613
RBEL391896
RBEL336407
RALB246199 GRAORF_4468
RAKA293614
PTOR263820
PSP117 RB12080
PRUM264731 GFRORF1413
PPEN278197 PEPE_1366
PMAR93060 P9215_19571
PMAR74546 PMT9312_1777
PMAR59920 PMN2A_1285
PMAR167555 NATL1_21571
PMAR167546 P9301ORF_1917
PMAR167542 P9515ORF_1958
PMAR167540 PMM1684
PMAR167539 PRO_1847
PMAR146891 A9601_18941
PISL384616 PISL_0680
PHOR70601 PH1886
PFUR186497 PF1922
PAST100379
PARS340102 PARS_2349
PAER178306 PAE0701
PACN267747 PPA0543
PABY272844 PAB1206
OTSU357244
NSP387092 NIS_0045
NSEN222891
NPHA348780 NP0018A
NFAR247156 NFA48740
MVAN350058 MVAN_4776
MTUB419947 MRA_1029
MTUB336982 TBFG_11039
MTHE349307 MTHE_1699
MTHE187420 MTH827
MTBRV RV1021
MTBCDC MT1049
MSYN262723
MSTA339860
MSP189918 MKMS_4330
MSP164757 MJLS_4623
MSP164756 MMCS_4244
MSME246196 MSMEG_5422
MSED399549 MSED_2163
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAZ192952 MM1706
MMAR444158 MMARC6_0845
MMAR426368 MMARC7_1101
MMAR402880 MMARC5_1574
MMAR368407 MEMAR_2225
MMAR267377 MMP0102
MLEP272631
MLAB410358
MKAN190192 MK0282
MJAN243232 MJ_0172
MHYO295358
MHYO262722
MHYO262719
MHUN323259 MHUN_2850
MGEN243273
MFLO265311
MCAP340047
MBUR259564 MBUR_1894
MBOV410289 BCG_1078
MBOV233413 MB1049
MBAR269797 MBAR_A1517
MAVI243243 MAV_1162
MART243272
MAEO419665 MAEO_1317
MACE188937 MA0543
MABS561007 MAB_1158
LXYL281090 LXX17260
LWEL386043 LWE1768
LSAK314315 LSA1479
LREU557436 LREU_1438
LPLA220668 LP_1151
LMON265669 LMOF2365_1776
LMON169963 LMO1751
LMES203120 LEUM_1577
LLAC272623
LLAC272622
LJOH257314 LJ_1698
LINT363253 LI0375
LINN272626 LIN1863
LHEL405566 LHV_0563
LGAS324831 LGAS_1493
LDEL390333 LDB0473
LDEL321956 LBUL_0421
LCAS321967 LSEI_1061
LBRE387344 LVIS_1627
LBIF456481 LEPBI_I0654
LBIF355278 LBF_0632
LACI272621 LBA0539
KRAD266940 KRAD_1070
IHOS453591 IGNI_0877
HWAL362976 HQ1357A
HSP64091
HSAL478009
HPYL85963 JHP1017
HPYL357544 HPAG1_1030
HPY HP0363
HMUK485914 HMUK_0525
HMAR272569 RRNAC2258
HHEP235279 HH_0604
HBUT415426 HBUT_0632
HACI382638 HAC_0412
FTUL458234 FTA_1615
FTUL418136 FTW_1538
FTUL401614 FTN_0616
FTUL393115 FTF0705
FTUL393011 FTH_1481
FTUL351581 FTL_1531
FSUC59374 FSU0894
FSP1855 FRANEAN1_0805
FRANT RUMA
FPHI484022 FPHI_0226
FNUC190304
FMAG334413 FMG_1424
FALN326424 FRAAL6235
ERUM302409
ERUM254945
EFAE226185 EF_0728
ECHA205920
ECAN269484
DSP255470 CBDBA1735
DSP216389 DEHABAV1_1381
DGEO319795 DGEO_0816
DETH243164 DET_1637
CTRA471473 CTLON_0503
CTRA471472 CTL0507
CSUL444179
CRUT413404 RMAG_0964
CPNE182082 CPB0414
CPNE138677 CPJ0401
CPNE115713 CPN0401
CPNE115711 CP_0354
CPEL335992
CMUR243161 TC_0526
CMIC443906 CMM_2266
CMIC31964 CMS2459
CMET456442 MBOO_0258
CMAQ397948 CMAQ_1536
CKOR374847 KCR_1422
CJEJ407148 C8J_0206
CJEJ360109 JJD26997_0226
CJEJ354242 CJJ81176_0253
CJEJ195099 CJE_0279
CJEJ192222 CJ0228C
CHOM360107 CHAB381_0196
CFET360106 CFF8240_0031
CFEL264202 CF0615
CDIP257309 DIP0915
CCUR360105 CCV52592_2091
CCON360104 CCC13826_0294
CCAV227941 CCA_00393
CBUR434922 COXBU7E912_0330
CBUR360115 COXBURSA331_A1862
CBUR227377 CBU_1670
CBLO291272 BPEN_173
CBLO203907 BFL167
CABO218497 CAB381
BTUR314724
BSP107806 BU418
BLON206672 BL0851
BHER314723
BGAR290434
BCIC186490 BCI_0175
BBUR224326
BAPH372461
BAPH198804
BAFZ390236
AYEL322098
AURANTIMONAS
ASP1667 ARTH_1146
APHA212042
APER272557 APE1011
ANAE240017
AMAR234826
ALAI441768
AFUL224325 AF_0036
ABUT367737
AAUR290340 AAUR_1262


Organism features enriched in list (features available for 231 out of the 247 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00480534792
Arrangment:Pairs 1.216e-623112
Disease:Pharyngitis 0.000564088
Disease:Tularemia 0.009511855
Disease:Wide_range_of_infections 0.00003261111
Disease:bronchitis_and_pneumonitis 0.000564088
Endospores:No 4.089e-15128211
Endospores:Yes 4.706e-9353
GC_Content_Range4:0-40 8.973e-20136213
GC_Content_Range4:40-60 7.832e-859224
GC_Content_Range4:60-100 3.453e-635145
GC_Content_Range7:0-30 7.396e-63347
GC_Content_Range7:30-40 2.670e-12103166
GC_Content_Range7:50-60 3.965e-1114107
GC_Content_Range7:60-70 1.161e-728134
Genome_Size_Range5:0-2 4.173e-57142155
Genome_Size_Range5:2-4 0.004613665197
Genome_Size_Range5:4-6 2.183e-2717184
Genome_Size_Range5:6-10 0.0001015747
Genome_Size_Range9:0-1 2.452e-102627
Genome_Size_Range9:1-2 1.531e-42116128
Genome_Size_Range9:3-4 0.00025671777
Genome_Size_Range9:4-5 5.938e-121096
Genome_Size_Range9:5-6 7.287e-13788
Genome_Size_Range9:6-8 0.0002010538
Gram_Stain:Gram_Neg 3.219e-1488333
Gram_Stain:Gram_Pos 0.000131978150
Habitat:Host-associated 0.0000578103206
Habitat:Multiple 0.002017456178
Habitat:Terrestrial 0.0001510331
Motility:No 3.730e-1194151
Motility:Yes 5.173e-1659267
Optimal_temp.:37 0.000206858106
Pathogenic_in:Swine 0.009511855
Shape:Coccus 0.00009204882
Shape:Irregular_coccus 2.818e-61617
Shape:Rod 1.635e-2084347
Shape:Sphere 0.00006171619
Shape:Spiral 0.00012882434
Temp._range:Hyperthermophilic 0.00227351623



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951720.6014
GLYCOCAT-PWY (glycogen degradation I)2461950.5743
PWY-4041 (γ-glutamyl cycle)2792090.5612
NAGLIPASYN-PWY (lipid IVA biosynthesis)3482380.5532
PWY-1269 (CMP-KDO biosynthesis I)3252280.5507
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3002170.5505
GLUTATHIONESYN-PWY (glutathione biosynthesis)3392320.5383
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)1491360.5342
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251780.5321
PWY-5918 (heme biosynthesis I)2722010.5306
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2862060.5205
TYRFUMCAT-PWY (tyrosine degradation I)1841540.5180
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181710.5093
PYRIDOXSYN-PWY (pyridoxal 5'-phosphate biosynthesis I)4222580.5008
PWY-5913 (TCA cycle variation IV)3012080.4893
PWY-6268 (adenosylcobalamin salvage from cobalamin)3172150.4889
AST-PWY (arginine degradation II (AST pathway))1201120.4856
PWY0-845 (superpathway of pyridoxal 5'-phosphate biosynthesis and salvage)3292190.4813
PWY-5148 (acyl-CoA hydrolysis)2271710.4782
PWY-5386 (methylglyoxal degradation I)3052070.4713
PWY-5028 (histidine degradation II)1301160.4681
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2912000.4668
UBISYN-PWY (ubiquinol-8 biosynthesis (prokaryotic))3982440.4642
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2962010.4586
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2901980.4568
PWY0-862 (cis-dodecenoyl biosynthesis)3432210.4560
PWY-5856 (ubiquinone-9 biosynthesis (prokaryotic))2551810.4528
SULFATE-CYS-PWY (superpathway of sulfate assimilation and cysteine biosynthesis)3652290.4495
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491770.4455
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491770.4455
PWY0-541 (cyclopropane fatty acid (CFA) biosynthesis)3002000.4405
P381-PWY (adenosylcobalamin biosynthesis II (late cobalt incorporation))3712300.4403
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)1761380.4352
PWY-5340 (sulfate activation for sulfonation)3852340.4304
PWY-5857 (ubiquinone-10 biosynthesis (prokaryotic))1831410.4296
ECASYN-PWY (enterobacterial common antigen biosynthesis)1911450.4278
PWY-5507 (adenosylcobalamin biosynthesis I (early cobalt insertion))2991970.4240
PHENYLALANINE-DEG1-PWY (phenylalanine degradation I (aerobic))2891920.4208
PWY-5669 (phosphatidylethanolamine biosynthesis I)4162440.4191
GLUCONSUPER-PWY (D-gluconate degradation)2291630.4177
PWY0-901 (selenocysteine biosynthesis I (bacteria))2301630.4144
PWY-5855 (ubiquinone-7 biosynthesis (prokaryotic))1911430.4138
PWY-6087 (4-chlorocatechol degradation)2231590.4110
P344-PWY (acrylonitrile degradation)2101520.4080
PWY-5938 ((R)-acetoin biosynthesis I)3762270.4074
GDPRHAMSYN-PWY (GDP-D-rhamnose biosynthesis)1561230.4060
PROSYN-PWY (proline biosynthesis I)4752620.4034



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG11247   EG10689   EG10572   
EG121110.9989180.9998780.998617
EG112470.9988630.999215
EG106890.998536
EG10572



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PAIRWISE BLAST SCORES:

  EG12111   EG11247   EG10689   EG10572   
EG121110.0f0---
EG11247-0.0f0--
EG10689--0.0f0-
EG10572---0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10689 EG12111 (centered at EG10689)
EG10572 (centered at EG10572)
EG11247 (centered at EG11247)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  EG12111   EG11247   EG10689   EG10572   
282/623351/623318/623376/623
AAEO224324:0:Tyes-0-60
AAUR290340:2:Tyes---0
AAVE397945:0:Tyes118720-
ABAC204669:0:Tyes--2890
ABAU360910:0:Tyes304-
ABOR393595:0:Tyes24680466
ACAU438753:0:Tyes751465720
ACEL351607:0:Tyes0--1532
ACRY349163:8:Tyes-012481226
ADEH290397:0:Tyes0-9861994
AEHR187272:0:Tyes4670469103
AFER243159:0:Tyes-02251-
AFUL224325:0:Tyes--0-
AHYD196024:0:Tyes120102
AMAR329726:9:Tyes03726-2715
AMET293826:0:Tyes45453778-0
AORE350688:0:Tyes22590-2105
APER272557:0:Tyes--0-
APLE416269:0:Tyes16610-317
APLE434271:0:Tno16760-277
ASAL382245:5:Tyes012210
ASP1667:3:Tyes---0
ASP232721:2:Tyes112040-
ASP62928:0:Tyes1120-
ASP62977:0:Tyes01700-1697
ASP76114:2:Tyes708-
AVAR240292:3:Tyes282722-0
BABO262698:1:Tno4170416573
BAMB339670:2:Tno0---
BAMB339670:3:Tno-05-
BAMB398577:3:Tno0502507-
BAMY326423:0:Tyes-643-0
BANT260799:0:Tno-298-0
BANT261594:2:Tno-255-0
BANT568206:2:Tyes-268-0
BANT592021:2:Tno-269-0
BBAC264462:0:Tyes494217810540
BBAC360095:0:Tyes1-0-
BBRO257310:0:Tyes405-
BCAN483179:1:Tno4450444620
BCEN331271:0:Tno150-
BCEN331272:3:Tyes405-
BCER226900:1:Tyes-301-0
BCER288681:0:Tno-294-0
BCER315749:1:Tyes-248-0
BCER405917:1:Tyes-298-0
BCER572264:1:Tno-261-0
BCIC186490:0:Tyes0---
BCLA66692:0:Tyes-1047-0
BFRA272559:1:Tyes24821563-0
BFRA295405:0:Tno26871515-0
BHAL272558:0:Tyes-667-0
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ZMOB264203:0:Tyes0--114



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