CANDIDATE ID: 975

CANDIDATE ID: 975

NUMBER OF GENES: 4
AVERAGE SCORE:    9.9935633e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    5.0000000e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- EG11070 (dsbC) (b2893)
   Products of gene:
     - DSBC-MONOMER (DsbCreduced)
     - DSBCOX-MONOMER (DsbCoxidized)
     - DSBC-CPLX (protein disulfide isomerase / protein disulfide oxidoreductase)
       Reactions:
        a protein with incorrect disulfide bonds  =  a protein with correct disulfide bonds
        a protein with reduced sulfide groups  =  a protein with oxidized disulfide bonds

- EG10830 (recJ) (b2892)
   Products of gene:
     - EG10830-MONOMER (RecJ)
       Reactions:
        DNA with lesion  =  DNA with lesion resolved through Rec-mediated pathway

- EG10553 (lysU) (b4129)
   Products of gene:
     - LYSU-MONOMER (lysyl-tRNA synthetase)
     - LYSU-CPLX (Ap3A synthetase / Ap4A synthetase / lysyl-tRNA synthetase)
       Reactions:
        ATP + ADP  ->  5',5'''-diadenosine triphosphate + diphosphate
        ATP + ATP  =  5',5'''-diadenosine tetraphosphate + diphosphate + H+
        L-lysine + tRNAlys + ATP  ->  L-lysyl-tRNAlys + diphosphate + AMP
         In pathways
         TRNA-CHARGING-PWY (tRNA charging pathway)

- EG10552 (lysS) (b2890)
   Products of gene:
     - LYSS-MONOMER (lysyl tRNA synthetase (LysRSs), constitutive)
     - LYSS-CPLX (lysyl-tRNA synthetase, constitutive)
       Reactions:
        L-lysine + tRNAlys + ATP  ->  L-lysyl-tRNAlys + diphosphate + AMP
         In pathways
         TRNA-CHARGING-PWY (tRNA charging pathway)



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ORGANISMS CONTAINING AT LEAST 3 GENES FROM THE GROUP:

Total number of orgs: 289
Effective number of orgs (counting one per cluster within 468 clusters): 191

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317584
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329534
YPES386656 ncbi Yersinia pestis Pestoides F4
YPES377628 ncbi Yersinia pestis Nepal5164
YPES360102 ncbi Yersinia pestis Antiqua4
YPES349746 ncbi Yersinia pestis Angola4
YPES214092 ncbi Yersinia pestis CO924
YPES187410 ncbi Yersinia pestis KIM 104
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80814
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A4
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110184
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103314
XFAS405440 ncbi Xylella fastidiosa M124
XFAS183190 ncbi Xylella fastidiosa Temecula14
XFAS160492 ncbi Xylella fastidiosa 9a5c4
XCAM487884 Xanthomonas campestris pv. paulliniae4
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-104
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80044
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339134
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3064
VVUL216895 ncbi Vibrio vulnificus CMCP64
VVUL196600 ncbi Vibrio vulnificus YJ0164
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106334
VFIS312309 ncbi Vibrio fischeri ES1144
VEIS391735 ncbi Verminephrobacter eiseniae EF01-24
VCHO345073 ncbi Vibrio cholerae O3954
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169614
TTUR377629 ncbi Teredinibacter turnerae T79014
TELO197221 ncbi Thermosynechococcus elongatus BP-13
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252594
TCRU317025 ncbi Thiomicrospira crunogena XCL-24
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen3
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT24
STHE292459 ncbi Symbiobacterium thermophilum IAM 148633
SSP94122 ncbi Shewanella sp. ANA-34
SSP84588 ncbi Synechococcus sp. WH 81023
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)3
SSP321327 ncbi Synechococcus sp. JA-3-3Ab3
SSP1148 ncbi Synechocystis sp. PCC 68033
SSON300269 ncbi Shigella sonnei Ss0464
SSED425104 ncbi Shewanella sediminis HAW-EB34
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153053
SPRO399741 ncbi Serratia proteamaculans 5684
SPNE488221 ncbi Streptococcus pneumoniae 705853
SPEA398579 ncbi Shewanella pealeana ATCC 7003454
SONE211586 ncbi Shewanella oneidensis MR-14
SLOI323850 ncbi Shewanella loihica PV-44
SHIGELLA ncbi Shigella flexneri 2a str. 2457T4
SHAL458817 ncbi Shewanella halifaxensis HAW-EB44
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14353
SGLO343509 ncbi Sodalis glossinidius morsitans4
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB3
SFLE373384 ncbi Shigella flexneri 5 str. 84014
SFLE198214 ncbi Shigella flexneri 2a str. 3014
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122283
SEPI176279 ncbi Staphylococcus epidermidis RP62A3
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4764
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B674
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91504
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT184
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty24
SELO269084 ncbi Synechococcus elongatus PCC 63013
SDYS300267 ncbi Shigella dysenteriae Sd1974
SDEN318161 ncbi Shewanella denitrificans OS2174
SDEG203122 ncbi Saccharophagus degradans 2-404
SBOY300268 ncbi Shigella boydii Sb2274
SBAL402882 ncbi Shewanella baltica OS1854
SBAL399599 ncbi Shewanella baltica OS1954
SAUR93062 ncbi Staphylococcus aureus aureus COL3
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83253
SAUR426430 ncbi Staphylococcus aureus aureus Newman3
SAUR418127 ncbi Staphylococcus aureus aureus Mu33
SAUR367830 Staphylococcus aureus aureus USA3003
SAUR359787 ncbi Staphylococcus aureus aureus JH13
SAUR359786 ncbi Staphylococcus aureus aureus JH93
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4763
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2523
SAUR273036 ncbi Staphylococcus aureus RF1223
SAUR196620 ncbi Staphylococcus aureus aureus MW23
SAUR158879 ncbi Staphylococcus aureus aureus N3153
SAUR158878 ncbi Staphylococcus aureus aureus Mu503
SACI56780 ncbi Syntrophus aciditrophicus SB4
RSOL267608 ncbi Ralstonia solanacearum GMI10004
RMET266264 ncbi Ralstonia metallidurans CH344
RFER338969 ncbi Rhodoferax ferrireducens T1184
REUT381666 ncbi Ralstonia eutropha H164
REUT264198 ncbi Ralstonia eutropha JMP1344
RALB246199 Ruminococcus albus 83
PTHE370438 ncbi Pelotomaculum thermopropionicum SI3
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30004
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a4
PSTU379731 ncbi Pseudomonas stutzeri A15014
PSP56811 Psychrobacter sp.4
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-14
PSP296591 ncbi Polaromonas sp. JS6664
PPUT76869 ncbi Pseudomonas putida GB-14
PPUT351746 ncbi Pseudomonas putida F14
PPUT160488 ncbi Pseudomonas putida KT24404
PPRO298386 ncbi Photobacterium profundum SS94
PNAP365044 ncbi Polaromonas naphthalenivorans CJ24
PMUL272843 ncbi Pasteurella multocida multocida Pm704
PMEN399739 ncbi Pseudomonas mendocina ymp4
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO14
PING357804 ncbi Psychromonas ingrahamii 374
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1254
PGIN242619 ncbi Porphyromonas gingivalis W833
PFLU220664 ncbi Pseudomonas fluorescens Pf-54
PFLU216595 ncbi Pseudomonas fluorescens SBW254
PFLU205922 ncbi Pseudomonas fluorescens Pf0-14
PENT384676 ncbi Pseudomonas entomophila L484
PDIS435591 ncbi Parabacteroides distasonis ATCC 85033
PCRY335284 ncbi Psychrobacter cryohalolentis K54
PCAR338963 ncbi Pelobacter carbinolicus DSM 23804
PARC259536 ncbi Psychrobacter arcticus 273-44
PAER208964 ncbi Pseudomonas aeruginosa PAO14
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA144
OIHE221109 ncbi Oceanobacillus iheyensis HTE8313
NSP103690 ncbi Nostoc sp. PCC 71203
NMUL323848 ncbi Nitrosospira multiformis ATCC 251964
NMEN374833 ncbi Neisseria meningitidis 0534424
NMEN272831 ncbi Neisseria meningitidis FAM184
NMEN122587 ncbi Neisseria meningitidis Z24914
NMEN122586 ncbi Neisseria meningitidis MC584
NGON242231 ncbi Neisseria gonorrhoeae FA 10904
NEUT335283 ncbi Nitrosomonas eutropha C914
NEUR228410 ncbi Nitrosomonas europaea ATCC 197184
MXAN246197 ncbi Myxococcus xanthus DK 16223
MTHE264732 ncbi Moorella thermoacetica ATCC 390733
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E4
MSP400668 ncbi Marinomonas sp. MWYL14
MPET420662 ncbi Methylibium petroleiphilum PM14
MFLA265072 ncbi Methylobacillus flagellatus KT4
MCAP243233 ncbi Methylococcus capsulatus Bath4
MAQU351348 ncbi Marinobacter aquaeolei VT84
MAER449447 ncbi Microcystis aeruginosa NIES-8433
LSPH444177 ncbi Lysinibacillus sphaericus C3-413
LPNE400673 ncbi Legionella pneumophila Corby3
LPNE297246 ncbi Legionella pneumophila Paris3
LPNE297245 ncbi Legionella pneumophila Lens3
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 13
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82933
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-003
LCHO395495 ncbi Leptothrix cholodnii SP-64
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785784
JSP375286 ncbi Janthinobacterium sp. Marseille4
ILOI283942 ncbi Idiomarina loihiensis L2TR4
HSOM228400 ncbi Haemophilus somnus 23364
HSOM205914 ncbi Haemophilus somnus 129PT4
HINF71421 ncbi Haemophilus influenzae Rd KW204
HINF374930 ncbi Haemophilus influenzae PittEE4
HINF281310 ncbi Haemophilus influenzae 86-028NP4
HHAL349124 ncbi Halorhodospira halophila SL14
HDUC233412 ncbi Haemophilus ducreyi 35000HP4
HCHE349521 ncbi Hahella chejuensis KCTC 23964
HARS204773 ncbi Herminiimonas arsenicoxydans4
GVIO251221 ncbi Gloeobacter violaceus PCC 74213
GURA351605 ncbi Geobacter uraniireducens Rf44
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-23
GSUL243231 ncbi Geobacter sulfurreducens PCA4
GMET269799 ncbi Geobacter metallireducens GS-154
GKAU235909 ncbi Geobacillus kaustophilus HTA4263
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-003
FTUL418136 ncbi Francisella tularensis tularensis WY96-34183
FTUL401614 ncbi Francisella novicida U1123
FTUL393115 ncbi Francisella tularensis tularensis FSC1983
FTUL393011 ncbi Francisella tularensis holarctica OSU183
FTUL351581 Francisella tularensis holarctica FSC2003
FRANT ncbi Francisella tularensis tularensis SCHU S43
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250173
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B13
FMAG334413 ncbi Finegoldia magna ATCC 293283
ESP42895 Enterobacter sp.4
EFER585054 ncbi Escherichia fergusonii ATCC 354694
ECOO157 ncbi Escherichia coli O157:H7 EDL9334
ECOL83334 Escherichia coli O157:H74
ECOL585397 ncbi Escherichia coli ED1a4
ECOL585057 ncbi Escherichia coli IAI394
ECOL585056 ncbi Escherichia coli UMN0264
ECOL585055 ncbi Escherichia coli 559894
ECOL585035 ncbi Escherichia coli S884
ECOL585034 ncbi Escherichia coli IAI14
ECOL481805 ncbi Escherichia coli ATCC 87394
ECOL469008 ncbi Escherichia coli BL21(DE3)4
ECOL439855 ncbi Escherichia coli SMS-3-54
ECOL413997 ncbi Escherichia coli B str. REL6064
ECOL409438 ncbi Escherichia coli SE114
ECOL405955 ncbi Escherichia coli APEC O14
ECOL364106 ncbi Escherichia coli UTI894
ECOL362663 ncbi Escherichia coli 5364
ECOL331111 ncbi Escherichia coli E24377A4
ECOL316407 ncbi Escherichia coli K-12 substr. W31104
ECOL199310 ncbi Escherichia coli CFT0734
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10434
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough3
DSP255470 ncbi Dehalococcoides sp. CBDB13
DSP216389 ncbi Dehalococcoides sp. BAV13
DRED349161 ncbi Desulfotomaculum reducens MI-13
DPSY177439 ncbi Desulfotalea psychrophila LSv543
DOLE96561 ncbi Desulfococcus oleovorans Hxd33
DNOD246195 ncbi Dichelobacter nodosus VCS1703A4
DHAF138119 ncbi Desulfitobacterium hafniense Y513
DETH243164 ncbi Dehalococcoides ethenogenes 1953
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G203
DARO159087 ncbi Dechloromonas aromatica RCB4
CVIO243365 ncbi Chromobacterium violaceum ATCC 124724
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA3
CTET212717 ncbi Clostridium tetani E883
CSAL290398 ncbi Chromohalobacter salexigens DSM 30434
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)4
CPSY167879 ncbi Colwellia psychrerythraea 34H4
CPHY357809 ncbi Clostridium phytofermentans ISDg3
CPER289380 ncbi Clostridium perfringens SM1013
CPER195103 ncbi Clostridium perfringens ATCC 131243
CPER195102 ncbi Clostridium perfringens 133
CNOV386415 ncbi Clostridium novyi NT3
CKLU431943 ncbi Clostridium kluyveri DSM 5553
CJAP155077 Cellvibrio japonicus4
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29013
CDIF272563 ncbi Clostridium difficile 6303
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C3
CCHL340177 ncbi Chlorobium chlorochromatii CaD33
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1113
CBUR360115 ncbi Coxiella burnetii RSA 3313
CBUR227377 ncbi Coxiella burnetii RSA 4933
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto3
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6573
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B3
CBOT498213 ncbi Clostridium botulinum B1 str. Okra3
CBOT441772 ncbi Clostridium botulinum F str. Langeland3
CBOT441771 ncbi Clostridium botulinum A str. Hall3
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193973
CBOT36826 Clostridium botulinum A3
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80523
CACE272562 ncbi Clostridium acetobutylicum ATCC 8243
BWEI315730 ncbi Bacillus weihenstephanensis KBAB43
BVIE269482 ncbi Burkholderia vietnamiensis G44
BTHU412694 ncbi Bacillus thuringiensis Al Hakam3
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-273
BTHA271848 ncbi Burkholderia thailandensis E2644
BSUB ncbi Bacillus subtilis subtilis 1683
BSP36773 Burkholderia sp.4
BPSE320373 ncbi Burkholderia pseudomallei 6684
BPSE320372 ncbi Burkholderia pseudomallei 1710b4
BPSE272560 ncbi Burkholderia pseudomallei K962434
BPET94624 Bordetella petrii4
BPER257313 ncbi Bordetella pertussis Tohama I4
BPAR257311 ncbi Bordetella parapertussis 128224
BMAL320389 ncbi Burkholderia mallei NCTC 102474
BMAL320388 ncbi Burkholderia mallei SAVP14
BMAL243160 ncbi Burkholderia mallei ATCC 233444
BLIC279010 ncbi Bacillus licheniformis ATCC 145803
BHAL272558 ncbi Bacillus halodurans C-1253
BFRA295405 ncbi Bacteroides fragilis YCH463
BFRA272559 ncbi Bacteroides fragilis NCTC 93433
BCLA66692 ncbi Bacillus clausii KSM-K163
BCIC186490 Candidatus Baumannia cicadellinicola3
BCER572264 ncbi Bacillus cereus 03BB1023
BCER405917 Bacillus cereus W3
BCER315749 ncbi Bacillus cytotoxicus NVH 391-983
BCER288681 ncbi Bacillus cereus E33L3
BCER226900 ncbi Bacillus cereus ATCC 145793
BCEN331272 ncbi Burkholderia cenocepacia HI24244
BCEN331271 ncbi Burkholderia cenocepacia AU 10544
BBRO257310 ncbi Bordetella bronchiseptica RB504
BANT592021 ncbi Bacillus anthracis A02483
BANT568206 ncbi Bacillus anthracis CDC 6843
BANT261594 ncbi Bacillus anthracis Ames Ancestor3
BANT260799 ncbi Bacillus anthracis Sterne3
BAMY326423 ncbi Bacillus amyloliquefaciens FZB423
BAMB398577 ncbi Burkholderia ambifaria MC40-64
BAMB339670 ncbi Burkholderia ambifaria AMMD4
AVAR240292 ncbi Anabaena variabilis ATCC 294133
ASP76114 ncbi Aromatoleum aromaticum EbN14
ASP62977 ncbi Acinetobacter sp. ADP14
ASP62928 ncbi Azoarcus sp. BH724
ASP232721 ncbi Acidovorax sp. JS424
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4494
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL034
APLE416269 ncbi Actinobacillus pleuropneumoniae L204
AORE350688 ncbi Alkaliphilus oremlandii OhILAs3
AMET293826 ncbi Alkaliphilus metalliredigens QYMF3
AMAR329726 ncbi Acaryochloris marina MBIC110173
AHYD196024 Aeromonas hydrophila dhakensis4
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232703
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-14
ABOR393595 ncbi Alcanivorax borkumensis SK24
ABAU360910 ncbi Bordetella avium 197N4
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3453
AAVE397945 ncbi Acidovorax citrulli AAC00-14


Names of the homologs of the genes in the group in each of these orgs
  EG11070   EG10830   EG10553   EG10552   
YPSE349747 YPSIP31758_0880YPSIP31758_0881YPSIP31758_0883YPSIP31758_0883
YPSE273123 YPTB3166YPTB3165YPTB3163YPTB3163
YPES386656 YPDSF_0625YPDSF_0626YPDSF_0628YPDSF_0628
YPES377628 YPN_3090YPN_3089YPN_3087YPN_3087
YPES360102 YPA_0378YPA_0379YPA_0381YPA_0381
YPES349746 YPANGOLA_A3848YPANGOLA_A3849YPANGOLA_A3851YPANGOLA_A3851
YPES214092 YPO0891YPO0890YPO0888YPO0888
YPES187410 Y3275Y3274Y3272Y3272
YENT393305 YE3379YE3378YE3374YE3374
XORY360094 XOOORF_4573XOOORF_1795XOOORF_1807XOOORF_1807
XORY342109 XOO0765XOO2736XOO2726XOO2726
XORY291331 XOO0840XOO2884XOO2872XOO2872
XFAS405440 XFASM12_0771XFASM12_0455XFASM12_0457XFASM12_0457
XFAS183190 PD_0651PD_0402PD_0404PD_0404
XFAS160492 XF1424XF1110XF1112XF1112
XCAM487884 XCC-B100_3699XCC-B100_2134XCC-B100_2141XCC-B100_2141
XCAM316273 XCAORF_0808XCAORF_2099XCAORF_2106XCAORF_2106
XCAM314565 XC_3579XC_2343XC_2336XC_2336
XCAM190485 XCC0655XCC1846XCC1853XCC1853
XAXO190486 XAC3550XAC1865XAC1876XAC1876
VVUL216895 VV1_0529VV1_0528VV1_0526VV1_0526
VVUL196600 VV0666VV0667VV0669VV0669
VPAR223926 VP0510VP0511VP0513VP0513
VFIS312309 VF0449VF0450VF0453VF0453
VEIS391735 VEIS_0463VEIS_3183VEIS_3052VEIS_3052
VCHO345073 VC0395_A1994VC0395_A1993VC0395_A0195VC0395_A0195
VCHO VC2418VC2417VC0664VC0664
TTUR377629 TERTU_1163TERTU_1167TERTU_1172TERTU_1172
TELO197221 TLL1243TLL0212TLL0212
TDEN292415 TBD_2331TBD_1771TBD_0893TBD_0893
TCRU317025 TCR_0652TCR_1248TCR_0726TCR_0726
SWOL335541 SWOL_0805SWOL_0116SWOL_0116
STYP99287 STM3043STM3042STM3040STM3040
STHE292459 STH2439STH525STH525
SSP94122 SHEWANA3_3330SHEWANA3_3329SHEWANA3_3296SHEWANA3_3296
SSP84588 SYNW1206OR3395SYNW0127OR1200SYNW0127OR1200
SSP321332 CYB_0828CYB_1514CYB_1514
SSP321327 CYA_2826CYA_0333CYA_0333
SSP1148 SLL1354SLR1550SLR1550
SSON300269 SSO_3046SSO_3045SSO_3043SSO_3043
SSED425104 SSED_0894SSED_0895SSED_0841SSED_0841
SSAP342451 SSP1123SSP2239SSP2239
SPRO399741 SPRO_3891SPRO_3890SPRO_3888SPRO_3888
SPNE488221 SP70585_0673SP70585_0760SP70585_0760
SPEA398579 SPEA_0806SPEA_0807SPEA_0757SPEA_0757
SONE211586 SO_0951SO_0952SO_0992SO_0992
SLOI323850 SHEW_0771SHEW_0772SHEW_0812SHEW_0812
SHIGELLA DSBCRECJLYSSLYSS
SHAL458817 SHAL_0861SHAL_0862SHAL_0810SHAL_0810
SHAE279808 SH1285SH2493SH2493
SGLO343509 SG1992SG1991SG1989SG1989
SFUM335543 SFUM_3872SFUM_3742SFUM_3742
SFLE373384 SFV_2941SFV_2940SFV_2938SFV_2938
SFLE198214 AAN44364.1AAN44363.1AAN44362.1AAN44362.1
SEPI176280 SE_1318SE_2266SE_2266
SEPI176279 SERP1199SERP0156SERP0156
SENT454169 SEHA_C3274SEHA_C3273SEHA_C3271SEHA_C3271
SENT321314 SCH_2983SCH_2982SCH_2980SCH_2980
SENT295319 SPA2911SPA2910SPA2908SPA2908
SENT220341 STY3199STY3198STY3196STY3196
SENT209261 T2961T2960T2958T2958
SELO269084 SYC2209_CSYC1691_DSYC1691_D
SDYS300267 SDY_3189SDY_3190SDY_3192SDY_3192
SDEN318161 SDEN_0748SDEN_0749SDEN_3127SDEN_3127
SDEG203122 SDE_1208SDE_1213SDE_1217SDE_1217
SBOY300268 SBO_3099SBO_3100SBO_3102SBO_3102
SBAL402882 SHEW185_3523SHEW185_3522SHEW185_3491SHEW185_3491
SBAL399599 SBAL195_3642SBAL195_3641SBAL195_3614SBAL195_3614
SAUR93062 SACOL1691SACOL0562SACOL0562
SAUR93061 SAOUHSC_01744SAOUHSC_00493SAOUHSC_00493
SAUR426430 NWMN_1538NWMN_0479NWMN_0479
SAUR418127 SAHV_1623SAHV_0514SAHV_0514
SAUR367830 SAUSA300_1592SAUSA300_0496SAUSA300_0496
SAUR359787 SAURJH1_1726SAURJH1_0553SAURJH1_0553
SAUR359786 SAURJH9_1693SAURJH9_0539SAURJH9_0539
SAUR282459 SAS1572SAS0474SAS0474
SAUR282458 SAR1716SAR0518SAR0518
SAUR273036 SAB1505CSAB0466SAB0466
SAUR196620 MW1586MW0472MW0472
SAUR158879 SA1462SA0475SA0475
SAUR158878 SAV1636SAV0517SAV0517
SACI56780 SYN_03114SYN_02529SYN_00924SYN_00924
RSOL267608 RSC2892RSC1115RSC1028RSC1028
RMET266264 RMET_3190RMET_1038RMET_1034RMET_1034
RFER338969 RFER_1575RFER_3234RFER_1784RFER_1784
REUT381666 H16_A3331H16_A1171H16_A1167H16_A1167
REUT264198 REUT_A3035REUT_A1074REUT_A1070REUT_A1070
RALB246199 GRAORF_1979GRAORF_2872GRAORF_2872
PTHE370438 PTH_1043PTH_0263PTH_0263
PSYR223283 PSPTO_1479PSPTO_1488PSPTO_1501PSPTO_1501
PSYR205918 PSYR_1289PSYR_1298PSYR_1311PSYR_1311
PSTU379731 PST_1196PST_2759PST_2754PST_2754
PSP56811 PSYCPRWF_2009PSYCPRWF_0790PSYCPRWF_1456PSYCPRWF_1456
PSP312153 PNUC_0140PNUC_1470PNUC_1472PNUC_1472
PSP296591 BPRO_3505BPRO_1012BPRO_3620BPRO_3620
PPUT76869 PPUTGB1_1074PPUTGB1_1082PPUTGB1_1101PPUTGB1_1101
PPUT351746 PPUT_4252PPUT_4244PPUT_4226PPUT_4226
PPUT160488 PP_1469PP_1477PP_1496PP_1496
PPRO298386 PBPRA0567PBPRA0568PBPRA0570PBPRA0570
PNAP365044 PNAP_3367PNAP_3258PNAP_3050PNAP_3050
PMUL272843 PM0191PM0192PM0189PM0189
PMEN399739 PMEN_3395PMEN_3376PMEN_3370PMEN_3370
PLUM243265 PLU3551PLU3550PLU3548PLU3548
PING357804 PING_3303PING_3302PING_3428PING_3428
PHAL326442 PSHAA0515PSHAA0516PSHAA0518PSHAA0518
PGIN242619 PG_0054PG_1370PG_1370
PFLU220664 PFL_1102PFL_1120PFL_1138PFL_1138
PFLU216595 PFLU5007PFLU4999PFLU1228PFLU1228
PFLU205922 PFL_1026PFL_1035PFL_1060PFL_1060
PENT384676 PSEEN4253PSEEN4244PSEEN1255PSEEN1255
PDIS435591 BDI_1746BDI_0150BDI_0150
PCRY335284 PCRYO_0280PCRYO_0720PCRYO_1409PCRYO_1409
PCAR338963 PCAR_2069PCAR_1890PCAR_1248PCAR_1248
PARC259536 PSYC_0254PSYC_0733PSYC_1054PSYC_1054
PAER208964 PA3737PA3725PA3700PA3700
PAER208963 PA14_16050PA14_16220PA14_16530PA14_16530
OIHE221109 OB2026OB0088OB0088
NSP103690 ALR5127ALL4071ALL4071
NMUL323848 NMUL_A2445NMUL_A0640NMUL_A2275NMUL_A2275
NMEN374833 NMCC_0492NMCC_0800NMCC_1335NMCC_1335
NMEN272831 NMC0490NMC0780NMC1361NMC1361
NMEN122587 NMA0730NMA1052NMA1638NMA1638
NMEN122586 NMB_0550NMB_0842NMB_1425NMB_1425
NGON242231 NGO1438NGO0414NGO1454NGO1454
NEUT335283 NEUT_1688NEUT_0131NEUT_0872NEUT_0872
NEUR228410 NE1511NE0010NE2355NE2355
MXAN246197 MXAN_4688MXAN_4731MXAN_4731
MTHE264732 MOTH_1681MOTH_0152MOTH_0152
MSUC221988 MS1540MS1539MS1543MS1543
MSP400668 MMWYL1_3766MMWYL1_3760MMWYL1_1132MMWYL1_1132
MPET420662 MPE_A0592MPE_A2751MPE_A0600MPE_A0600
MFLA265072 MFLA_2143MFLA_2065MFLA_0797MFLA_0797
MCAP243233 MCA_0575MCA_0628MCA_0301MCA_0301
MAQU351348 MAQU_2275MAQU_2272MAQU_2270MAQU_2270
MAER449447 MAE_21660MAE_28230MAE_28230
LSPH444177 BSPH_3914BSPH_0101BSPH_0101
LPNE400673 LPC_0876LPC_1218LPC_1218
LPNE297246 LPP1417LPP1741LPP1741
LPNE297245 LPL1567LPL1741LPL1741
LPNE272624 LPG1461LPG1777LPG1777
LMES203120 LEUM_1474LEUM_0406LEUM_0406
LINT363253 LI0313LI1027LI1027
LCHO395495 LCHO_0267LCHO_2400LCHO_0288LCHO_0288
KPNE272620 GKPORF_B2677GKPORF_B2676GKPORF_B2674GKPORF_B2674
JSP375286 MMA_0230MMA_1263MMA_1260MMA_1260
ILOI283942 IL0825IL0824IL0822IL0822
HSOM228400 HSM_0526HSM_0527HSM_0524HSM_0524
HSOM205914 HS_1475HS_1474HS_1477HS_1477
HINF71421 HI_1213HI_1214HI_1211HI_1211
HINF374930 CGSHIEE_05970CGSHIEE_05965CGSHIEE_05980CGSHIEE_05980
HINF281310 NTHI1384NTHI1385NTHI1382NTHI1382
HHAL349124 HHAL_1944HHAL_0122HHAL_0048HHAL_0048
HDUC233412 HD_1340HD_1342HD_1318HD_1318
HCHE349521 HCH_01777HCH_01781HCH_01783HCH_01783
HARS204773 HEAR0195HEAR2227HEAR2230HEAR2230
GVIO251221 GLR0041GLL3356GLL3356
GURA351605 GURA_2546GURA_1721GURA_3240GURA_3240
GTHE420246 GTNG_2511GTNG_0074GTNG_0074
GSUL243231 GSU_0850GSU_2614GSU_2271GSU_2271
GMET269799 GMET_1150GMET_0857GMET_2360GMET_2360
GKAU235909 GK2580GK0074GK0074
FTUL458234 FTA_1670FTA_2010FTA_2010
FTUL418136 FTW_1592FTW_1899FTW_1899
FTUL401614 FTN_0569FTN_0168FTN_0168
FTUL393115 FTF0478CFTF0192FTF0192
FTUL393011 FTH_1531FTH_1825FTH_1825
FTUL351581 FTL_1585FTL_1903FTL_1903
FRANT RECJLYSULYSU
FPHI484022 FPHI_0268FPHI_0655FPHI_0655
FNOD381764 FNOD_0336FNOD_1154FNOD_1154
FMAG334413 FMG_0811FMG_0987FMG_0987
ESP42895 ENT638_3311ENT638_3310ENT638_3308ENT638_3308
EFER585054 EFER_2828EFER_2827EFER_2825EFER_2825
ECOO157 DSBCRECJLYSULYSU
ECOL83334 ECS3765ECS3764ECS5111ECS5111
ECOL585397 ECED1_3352ECED1_3351ECED1_3349ECED1_3349
ECOL585057 ECIAI39_3309ECIAI39_3308ECIAI39_4557ECIAI39_4557
ECOL585056 ECUMN_3235ECUMN_3234ECUMN_3232ECUMN_3232
ECOL585055 EC55989_3179EC55989_3178EC55989_4622EC55989_4622
ECOL585035 ECS88_3173ECS88_3172ECS88_4633ECS88_4633
ECOL585034 ECIAI1_3012ECIAI1_3011ECIAI1_4362ECIAI1_4362
ECOL481805 ECOLC_0816ECOLC_0817ECOLC_3898ECOLC_3898
ECOL469008 ECBD_0844ECBD_0845ECBD_0847ECBD_0847
ECOL439855 ECSMS35_3026ECSMS35_3025ECSMS35_4598ECSMS35_4598
ECOL413997 ECB_02725ECB_02724ECB_04000ECB_04000
ECOL409438 ECSE_3156ECSE_3155ECSE_4429ECSE_4429
ECOL405955 APECO1_3634APECO1_3635APECO1_2324APECO1_2324
ECOL364106 UTI89_C3278UTI89_C3277UTI89_C4726UTI89_C4726
ECOL362663 ECP_2886ECP_2885ECP_4373ECP_4373
ECOL331111 ECE24377A_3219ECE24377A_3218ECE24377A_4684ECE24377A_4684
ECOL316407 ECK2888:JW2861:B2893ECK2887:JW2860:B2892ECK4123:JW4090:B4129ECK4123:JW4090:B4129
ECOL199310 C3473C3472C5138C5138
ECAR218491 ECA0771ECA0772ECA0774ECA0774
DVUL882 DVU_0904DVU_2376DVU_2376
DSP255470 CBDBA922CBDBA555CBDBA555
DSP216389 DEHABAV1_0855DEHABAV1_0551DEHABAV1_0551
DRED349161 DRED_0731DRED_0175DRED_0175
DPSY177439 DP1929DP1629DP1629
DOLE96561 DOLE_2106DOLE_2847DOLE_2847
DNOD246195 DNO_1317DNO_0592DNO_0938DNO_0938
DHAF138119 DSY2453DSY0219DSY0219
DETH243164 DET_0964DET_0578DET_0578
DDES207559 DDE_2715DDE_1365DDE_1365
DARO159087 DARO_3509DARO_2838DARO_2848DARO_2848
CVIO243365 CV_3119CV_2475CV_1060CV_1060
CVES412965 COSY_0596COSY_0549COSY_0549
CTET212717 CTC_01744CTC_00211CTC_00211
CSAL290398 CSAL_3011CSAL_3008CSAL_2997CSAL_2997
CRUT413404 RMAG_0210RMAG_0649RMAG_0594RMAG_0594
CPSY167879 CPS_4095CPS_4094CPS_4082CPS_4082
CPHY357809 CPHY_0876CPHY_3556CPHY_3556
CPER289380 CPR_2036CPR_2467CPR_2467
CPER195103 CPF_2322CPF_2781CPF_2781
CPER195102 CPE2065CPE2465CPE2465
CNOV386415 NT01CX_2316NT01CX_1046NT01CX_1046
CKLU431943 CKL_2140CKL_0178CKL_0178
CJAP155077 CJA_1438CJA_1614CJA_2478CJA_2478
CHYD246194 CHY_2224CHY_2365CHY_2365
CDIF272563 CD2746CD3552CD3552
CDES477974 DAUD_0900DAUD_0131DAUD_0131
CCHL340177 CAG_0603CAG_1176CAG_1176
CBUR434922 COXBU7E912_1569COXBU7E912_1642COXBU7E912_1642
CBUR360115 COXBURSA331_A0618COXBURSA331_A0538COXBURSA331_A0538
CBUR227377 CBU_0506CBU_0430CBU_0430
CBOT536232 CLM_3130CLM_4004CLM_4004
CBOT515621 CLJ_B2991CLJ_B3842CLJ_B3842
CBOT508765 CLL_A0784CLL_A0178CLL_A0178
CBOT498213 CLD_1810CLD_0972CLD_0972
CBOT441772 CLI_2814CLI_3727CLI_3727
CBOT441771 CLC_2638CLC_3482CLC_3482
CBOT441770 CLB_2705CLB_3593CLB_3593
CBOT36826 CBO2763CBO3518CBO3518
CBEI290402 CBEI_4321CBEI_0105CBEI_0105
CACE272562 CAC2232CAC3197CAC3197
BWEI315730 BCERKBAB4_4256BCERKBAB4_0072BCERKBAB4_0072
BVIE269482 BCEP1808_7029BCEP1808_2195BCEP1808_2197BCEP1808_2197
BTHU412694 BALH_3990BALH_0075BALH_0075
BTHU281309 BT9727_4142BT9727_0072BT9727_0072
BTHA271848 BTH_I2917BTH_I1885BTH_I1883BTH_I1883
BSUB BSU27620BSU00820BSU00820
BSP36773 BCEP18194_A3613BCEP18194_A5422BCEP18194_A5424BCEP18194_A5424
BPSE320373 BURPS668_3564BURPS668_2588BURPS668_2591BURPS668_2591
BPSE320372 BURPS1710B_A3866BURPS1710B_A2955BURPS1710B_A2957BURPS1710B_A2957
BPSE272560 BPSL3058BPSL2279BPSL2281BPSL2281
BPET94624 BPET0326BPET2765BPET2768BPET2768
BPER257313 BP3270BP1105BP1102BP1102
BPAR257311 BPP4150BPP2048BPP2045BPP2045
BMAL320389 BMA10247_A1918BMA10247_1478BMA10247_1480BMA10247_1480
BMAL320388 BMASAVP1_0652BMASAVP1_A2205BMASAVP1_A2207BMASAVP1_A2207
BMAL243160 BMA_A0525BMA_1698BMA_1700BMA_1700
BLIC279010 BL01127BL03312BL03312
BHAL272558 BH1240BH0098BH0098
BFRA295405 BF3932BF3810BF3810
BFRA272559 BF3705BF3602BF3602
BCLA66692 ABC1568ABC0117ABC0117
BCIC186490 BCI_0150BCI_0152BCI_0152
BCER572264 BCA_4520BCA_0089BCA_0089
BCER405917 BCE_4493BCE_0075BCE_0075
BCER315749 BCER98_3125BCER98_0072BCER98_0072
BCER288681 BCE33L4153BCE33L0072BCE33L0072
BCER226900 BC_4403BC_0084BC_0084
BCEN331272 BCEN2424_0526BCEN2424_2116BCEN2424_2118BCEN2424_2118
BCEN331271 BCEN_2579BCEN_5961BCEN_5959BCEN_5959
BBRO257310 BB4620BB2296BB2293BB2293
BANT592021 BAA_4656BAA_0089BAA_0089
BANT568206 BAMEG_4673BAMEG_0089BAMEG_0089
BANT261594 GBAA4639GBAA0076GBAA0076
BANT260799 BAS4304BAS0076BAS0076
BAMY326423 RBAM_024730RBAM_000920RBAM_000920
BAMB398577 BAMMC406_0455BAMMC406_2026BAMMC406_2028BAMMC406_2028
BAMB339670 BAMB_0431BAMB_2153BAMB_2155BAMB_2155
AVAR240292 AVA_2372AVA_3150AVA_3150
ASP76114 EBA4099EBA5815EBA6841EBA6841
ASP62977 ACIAD0265ACIAD3500ACIAD1069ACIAD1069
ASP62928 AZO0724AZO1505AZO1487AZO1487
ASP232721 AJS_4180AJS_3424AJS_3250AJS_3250
ASAL382245 ASA_1035ASA_1036ASA_0940ASA_0940
APLE434271 APJL_0485APJL_0486APJL_0815APJL_0815
APLE416269 APL_0458APL_0459APL_0809APL_0809
AORE350688 CLOS_1716CLOS_0450CLOS_0450
AMET293826 AMET_2351AMET_4524AMET_4524
AMAR329726 AM1_2891AM1_5458AM1_5458
AHYD196024 AHA_3271AHA_3270AHA_3369AHA_3369
AFER243159 AFE_2561AFE_2557AFE_2557
AEHR187272 MLG_1487MLG_1819MLG_1804MLG_1804
ABOR393595 ABO_0804ABO_1651ABO_1648ABO_1648
ABAU360910 BAV3229BAV1520BAV1517BAV1517
ABAC204669 ACID345_4172ACID345_1286ACID345_1286
AAVE397945 AAVE_0884AAVE_3702AAVE_1204AAVE_1204


Organism features enriched in list (features available for 275 out of the 289 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Clusters 0.00041331517
Arrangment:Pairs 1.470e-981112
Disease:Gastroenteritis 0.00521541113
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 0.00023101111
Endospores:No 9.321e-1359211
Endospores:Yes 2.098e-64153
GC_Content_Range4:0-40 1.929e-674213
GC_Content_Range4:40-60 8.008e-10141224
GC_Content_Range7:0-30 0.00536131447
GC_Content_Range7:30-40 0.000247760166
GC_Content_Range7:40-50 0.002474768117
GC_Content_Range7:50-60 6.889e-773107
Genome_Size_Range5:0-2 1.788e-2520155
Genome_Size_Range5:4-6 1.325e-17134184
Genome_Size_Range9:0-1 4.943e-7127
Genome_Size_Range9:1-2 5.217e-1819128
Genome_Size_Range9:4-5 6.055e-76796
Genome_Size_Range9:5-6 1.600e-96788
Gram_Stain:Gram_Neg 1.100e-6185333
Habitat:Host-associated 0.007456885206
Habitat:Multiple 0.006888896178
Habitat:Specialized 0.00795031753
Habitat:Terrestrial 0.00935322131
Motility:No 0.000187553151
Motility:Yes 2.554e-6153267
Optimal_temp.:- 0.0068608134257
Optimal_temp.:30-37 0.00587581418
Optimal_temp.:35-37 0.00004911313
Oxygen_Req:Facultative 0.0000752116201
Pathogenic_in:Animal 0.00005134666
Pathogenic_in:Human 0.0030181115213
Pathogenic_in:No 0.000076585226
Shape:Irregular_coccus 0.0018809217
Shape:Rod 9.089e-14207347
Shape:Sphere 0.0006327219
Shape:Spiral 8.918e-7334
Temp._range:Hyperthermophilic 6.254e-6123
Temp._range:Mesophilic 0.0005558238473
Temp._range:Psychrophilic 0.001077799



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 238
Effective number of orgs (counting one per cluster within 468 clusters): 208

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM41
XAUT78245 ncbi Xanthobacter autotrophicus Py21
WPIP955 Wolbachia pipientis1
WPIP80849 Wolbachia endosymbiont of Brugia malayi1
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTHE300852 ncbi Thermus thermophilus HB80
TTHE262724 ncbi Thermus thermophilus HB270
TSP28240 Thermotoga sp.0
TPET390874 ncbi Thermotoga petrophila RKU-10
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TMAR243274 ncbi Thermotoga maritima MSB80
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TFUS269800 ncbi Thermobifida fusca YX0
TERY203124 ncbi Trichodesmium erythraeum IMS1011
TDEN243275 ncbi Treponema denticola ATCC 354050
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
STRO369723 ncbi Salinispora tropica CNB-4400
STOK273063 ncbi Sulfolobus tokodaii 70
SSP644076 Silicibacter sp. TrichCH4B1
SSP292414 ncbi Ruegeria sp. TM10401
SSOL273057 ncbi Sulfolobus solfataricus P20
SRUB309807 ncbi Salinibacter ruber DSM 138551
SMEL266834 ncbi Sinorhizobium meliloti 10211
SMED366394 ncbi Sinorhizobium medicae WSM4191
SMAR399550 ncbi Staphylothermus marinus F10
SLAC55218 Ruegeria lacuscaerulensis1
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23380
SCO ncbi Streptomyces coelicolor A3(2)0
SAVE227882 ncbi Streptomyces avermitilis MA-46800
SARE391037 ncbi Salinispora arenicola CNS-2050
SALA317655 ncbi Sphingopyxis alaskensis RB22561
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99410
RTYP257363 ncbi Rickettsia typhi Wilmington1
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170251
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170291
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.11
RSP101510 ncbi Rhodococcus jostii RHA10
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332090
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111701
RRIC452659 ncbi Rickettsia rickettsii Iowa1
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith1
RPRO272947 ncbi Rickettsia prowazekii Madrid E1
RPOM246200 ncbi Ruegeria pomeroyi DSS-31
RPAL316058 ncbi Rhodopseudomonas palustris HaA21
RPAL316057 ncbi Rhodopseudomonas palustris BisB51
RPAL316056 ncbi Rhodopseudomonas palustris BisB181
RPAL316055 ncbi Rhodopseudomonas palustris BisA531
RPAL258594 ncbi Rhodopseudomonas palustris CGA0091
RMAS416276 ncbi Rickettsia massiliae MTU51
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38411
RFEL315456 ncbi Rickettsia felis URRWXCal21
RETL347834 ncbi Rhizobium etli CFN 421
RDEN375451 ncbi Roseobacter denitrificans OCh 1141
RCON272944 ncbi Rickettsia conorii Malish 71
RCAS383372 ncbi Roseiflexus castenholzii DSM 139411
RCAN293613 ncbi Rickettsia canadensis McKiel1
RBEL391896 ncbi Rickettsia bellii OSU 85-3891
RBEL336407 ncbi Rickettsia bellii RML369-C1
RAKA293614 ncbi Rickettsia akari Hartford1
PTOR263820 ncbi Picrophilus torridus DSM 97900
PSP117 Pirellula sp.1
PRUM264731 ncbi Prevotella ruminicola 231
PMOB403833 ncbi Petrotoga mobilis SJ951
PMAR93060 ncbi Prochlorococcus marinus MIT 92151
PMAR74546 ncbi Prochlorococcus marinus MIT 93121
PMAR59920 ncbi Prochlorococcus marinus NATL2A0
PMAR167555 ncbi Prochlorococcus marinus NATL1A0
PMAR167542 ncbi Prochlorococcus marinus MIT 95151
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR146891 ncbi Prochlorococcus marinus AS96010
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 171
PHOR70601 ncbi Pyrococcus horikoshii OT30
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PAER178306 ncbi Pyrobaculum aerophilum IM20
PACN267747 ncbi Propionibacterium acnes KPA1712020
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong1
OCAR504832 ncbi Oligotropha carboxidovorans OM51
OANT439375 ncbi Ochrobactrum anthropi ATCC 491881
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2551
NSP35761 Nocardioides sp.0
NSEN222891 ncbi Neorickettsia sennetsu Miyayama1
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
NHAM323097 ncbi Nitrobacter hamburgensis X141
NFAR247156 ncbi Nocardia farcinica IFM 101520
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-10
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra0
MTUB336982 ncbi Mycobacterium tuberculosis F110
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MTBRV ncbi Mycobacterium tuberculosis H37Rv0
MTBCDC ncbi Mycobacterium tuberculosis CDC15510
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSP409 Methylobacterium sp.1
MSP266779 ncbi Chelativorans sp. BNC11
MSP189918 ncbi Mycobacterium sp. KMS0
MSP164757 ncbi Mycobacterium sp. JLS0
MSP164756 ncbi Mycobacterium sp. MCS0
MSME246196 ncbi Mycobacterium smegmatis MC2 1550
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR394221 ncbi Maricaulis maris MCS101
MMAR368407 ncbi Methanoculleus marisnigri JR11
MMAR267377 ncbi Methanococcus maripaludis S20
MMAG342108 ncbi Magnetospirillum magneticum AMB-11
MLOT266835 ncbi Mesorhizobium loti MAFF3030991
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK0
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MEXT419610 ncbi Methylobacterium extorquens PA11
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P20
MBOV233413 ncbi Mycobacterium bovis AF2122/970
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MAVI243243 ncbi Mycobacterium avium 1040
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
MABS561007 ncbi Mycobacterium abscessus ATCC 199770
LXYL281090 ncbi Leifsonia xyli xyli CTCB070
KRAD266940 ncbi Kineococcus radiotolerans SRS302160
JSP290400 ncbi Jannaschia sp. CCS11
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSAL478009 ncbi Halobacterium salinarum R10
HNEP81032 Hyphomonas neptunium1
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMOD498761 ncbi Heliobacterium modesticaldum Ice11
HMAR272569 ncbi Haloarcula marismortui ATCC 430490
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237791
GOXY290633 ncbi Gluconobacter oxydans 621H1
GBET391165 ncbi Granulibacter bethesdensis CGDNIH11
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S851
FSP1855 Frankia sp. EAN1pec0
FSP106370 ncbi Frankia sp. CcI30
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255861
FALN326424 ncbi Frankia alni ACN14a0
ERUM302409 ncbi Ehrlichia ruminantium Gardel1
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden1
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas1
ECAN269484 ncbi Ehrlichia canis Jake1
DSHI398580 ncbi Dinoroseobacter shibae DFL 121
DRAD243230 ncbi Deinococcus radiodurans R11
DGEO319795 ncbi Deinococcus geothermalis DSM 113000
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis1
CTRA471472 ncbi Chlamydia trachomatis 434/Bu1
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CSP78 Caulobacter sp.1
CSP501479 Citreicella sp. SE451
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE251
CPNE182082 ncbi Chlamydophila pneumoniae TW-1831
CPNE138677 ncbi Chlamydophila pneumoniae J1381
CPNE115713 ncbi Chlamydophila pneumoniae CWL0291
CPNE115711 ncbi Chlamydophila pneumoniae AR391
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10620
CMUR243161 ncbi Chlamydia muridarum Nigg1
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3820
CMIC31964 ncbi Clavibacter michiganensis sepedonicus0
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CJEI306537 ncbi Corynebacterium jeikeium K4110
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334061
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3811
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130320
CFET360106 ncbi Campylobacter fetus fetus 82-400
CFEL264202 ncbi Chlamydophila felis Fe/C-561
CEFF196164 ncbi Corynebacterium efficiens YS-3140
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131290
CCAV227941 ncbi Chlamydophila caviae GPIC1
CAULO ncbi Caulobacter crescentus CB151
CABO218497 ncbi Chlamydophila abortus S26/31
BXEN266265 ncbi Burkholderia xenovorans LB4000
BTUR314724 ncbi Borrelia turicatae 91E1350
BTRI382640 ncbi Bartonella tribocorum CIP 1054761
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54821
BSUI470137 ncbi Brucella suis ATCC 234451
BSUI204722 ncbi Brucella suis 13301
BSP376 Bradyrhizobium sp.1
BQUI283165 ncbi Bartonella quintana Toulouse1
BOVI236 Brucella ovis1
BMEL359391 ncbi Brucella melitensis biovar Abortus 23081
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M1
BLON206672 ncbi Bifidobacterium longum NCC27050
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1101
BHER314723 ncbi Borrelia hermsii DAH0
BHEN283166 ncbi Bartonella henselae Houston-11
BGAR290434 ncbi Borrelia garinii PBi0
BCAN483179 ncbi Brucella canis ATCC 233651
BBUR224326 ncbi Borrelia burgdorferi B310
BBAC360095 ncbi Bartonella bacilliformis KC5831
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1001
BAFZ390236 ncbi Borrelia afzelii PKo0
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9411
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP1667 Arthrobacter sp.0
APHA212042 ncbi Anaplasma phagocytophilum HZ1
APER272557 ncbi Aeropyrum pernix K10
ANAE240017 Actinomyces oris MG10
AMAR234826 ncbi Anaplasma marginale St. Maries1
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C1
ACRY349163 ncbi Acidiphilium cryptum JF-51
ACEL351607 ncbi Acidothermus cellulolyticus 11B0
ACAU438753 ncbi Azorhizobium caulinodans ORS 5711
AAUR290340 ncbi Arthrobacter aurescens TC10


Names of the homologs of the genes in the group in each of these orgs
  EG11070   EG10830   EG10553   EG10552   
ZMOB264203 ZMO1231
XAUT78245 XAUT_4751
WPIP955 WD_0312
WPIP80849 WB_0207
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496
TWHI203267
TVOL273116
TTHE300852
TTHE262724
TSP28240
TPET390874
TPEN368408
TPAL243276
TMAR243274
TKOD69014
TFUS269800
TERY203124 TERY_4190
TDEN243275
TACI273075
STRO369723
STOK273063
SSP644076 SCH4B_1514
SSP292414 TM1040_2166
SSOL273057
SRUB309807 SRU_2233
SMEL266834 SMC00292
SMED366394 SMED_1452
SMAR399550
SLAC55218 SL1157_3284
SERY405948
SCO
SAVE227882
SARE391037
SALA317655 SALA_3014
SACI330779
RXYL266117
RTYP257363 RT0515
RSPH349102 RSPH17025_0832
RSPH349101 RSPH17029_2059
RSPH272943 RSP_0405
RSP101510
RSAL288705
RRUB269796 RRU_A2408
RRIC452659 RRIOWA_0828
RRIC392021 A1G_03945
RPRO272947 RP528
RPOM246200 SPO_1732
RPAL316058 RPB_2962
RPAL316057 RPD_2499
RPAL316056 RPC_2813
RPAL316055 RPE_2934
RPAL258594 RPA2508
RMAS416276 RMA_0704
RLEG216596 RL2099
RFEL315456 RF_0763
RETL347834 RHE_CH01879
RDEN375451 RD1_2536
RCON272944 RC0761
RCAS383372 RCAS_3931
RCAN293613 A1E_02745
RBEL391896 A1I_06330
RBEL336407 RBE_0295
RAKA293614 A1C_03765
PTOR263820
PSP117 RB8726
PRUM264731 GFRORF0555
PMOB403833 PMOB_0338
PMAR93060 P9215_18921
PMAR74546 PMT9312_1711
PMAR59920
PMAR167555
PMAR167542 P9515ORF_1888
PMAR167540
PMAR146891
PISL384616
PINT246198 PIN_A1800
PHOR70601
PFUR186497
PAST100379
PARS340102
PAER178306
PACN267747
PABY272844
OTSU357244 OTBS_0497
OCAR504832 OCAR_6019
OANT439375 OANT_1920
NWIN323098 NWI_1645
NSP35761
NSEN222891 NSE_0712
NPHA348780
NHAM323097 NHAM_2307
NFAR247156
MVAN350058
MTUB419947
MTUB336982
MTHE349307
MTHE187420
MTBRV
MTBCDC
MSYN262723
MSTA339860
MSP409 M446_3141
MSP266779 MESO_0990
MSP189918
MSP164757
MSP164756
MSME246196
MSED399549
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR394221 MMAR10_1506
MMAR368407 MEMAR_2341
MMAR267377
MMAG342108 AMB3730
MLOT266835 MLL0927
MLEP272631
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGIL350054
MGEN243273
MFLO265311
MEXT419610 MEXT_2762
MCAP340047
MBUR259564
MBOV410289
MBOV233413
MBAR269797
MAVI243243
MART243272
MAEO419665
MACE188937
MABS561007
LXYL281090
KRAD266940
JSP290400 JANN_3002
IHOS453591
HWAL362976
HSP64091
HSAL478009
HNEP81032 HNE_1968
HMUK485914
HMOD498761 HM1_2535
HMAR272569
HBUT415426
HAUR316274 HAUR_4833
GOXY290633 GOX1515
GBET391165 GBCGDNIH1_1400
FSUC59374 FSU2428
FSP1855
FSP106370
FNUC190304 FN0374
FALN326424
ERUM302409 ERGA_CDS_08960
ERUM254945 ERWE_CDS_09060
ECHA205920 ECH_1115
ECAN269484 ECAJ_0891
DSHI398580 DSHI_2275
DRAD243230 DR_1126
DGEO319795
CTRA471473 CTLON_0703
CTRA471472 CTL0707
CSUL444179
CSP78 CAUL_3011
CSP501479 CSE45_0712
CPRO264201 PC0249
CPNE182082 CPB0585
CPNE138677 CPJ0563
CPNE115713 CPN0563
CPNE115711 CP_0187
CPEL335992
CMUR243161 TC_0732
CMIC443906
CMIC31964
CMET456442
CMAQ397948
CKOR374847
CJEI306537
CHUT269798 CHU_3668
CHOM360107 CHAB381_1646
CGLU196627
CFET360106
CFEL264202 CF0827
CEFF196164
CDIP257309
CCAV227941 CCA_00179
CAULO CC1386
CABO218497 CAB176
BXEN266265
BTUR314724
BTRI382640 BT_1474
BTHE226186 BT_3939
BSUI470137 BSUIS_A1319
BSUI204722 BR_1270
BSP376 BRADO3577
BQUI283165 BQ06620
BOVI236 GBOORF1278
BMEL359391 BAB1_1290
BMEL224914 BMEI0728
BLON206672
BJAP224911 BLR4377
BHER314723
BHEN283166 BH07830
BGAR290434
BCAN483179 BCAN_A1291
BBUR224326
BBAC360095 BARBAKC583_0900
BBAC264462 BD2232
BAFZ390236
BABO262698 BRUAB1_1272
AYEL322098
AURANTIMONAS
ASP1667
APHA212042 APH_1165
APER272557
ANAE240017
AMAR234826 AM1133
AFUL224325
ADEH290397 ADEH_2536
ACRY349163 ACRY_1296
ACEL351607
ACAU438753 AZC_1851
AAUR290340


Organism features enriched in list (features available for 216 out of the 238 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 2.644e-81292
Arrangment:Pairs 2.057e-719112
Disease:Brucellosis 0.006778755
Disease:Pharyngitis 0.000326888
Disease:bronchitis_and_pneumonitis 0.000326888
Endospores:No 4.353e-6103211
Endospores:Yes 0.00154641053
GC_Content_Range4:40-60 0.000034561224
GC_Content_Range4:60-100 5.055e-881145
GC_Content_Range7:0-30 0.00154472747
GC_Content_Range7:30-40 0.000928046166
GC_Content_Range7:40-50 0.007192633117
GC_Content_Range7:50-60 0.002988828107
GC_Content_Range7:60-70 0.000018370134
GC_Content_Range7:70-100 0.00001531111
Genome_Size_Range5:0-2 2.648e-1090155
Genome_Size_Range5:4-6 2.599e-644184
Genome_Size_Range9:0-1 0.00001052127
Genome_Size_Range9:1-2 4.945e-669128
Genome_Size_Range9:2-3 0.002425632120
Genome_Size_Range9:4-5 0.00443532596
Genome_Size_Range9:5-6 0.00037371988
Gram_Stain:Gram_Neg 0.0069865111333
Gram_Stain:Gram_Pos 0.002157042150
Habitat:Multiple 0.000064146178
Motility:Yes 0.000187579267
Optimal_temp.:- 0.002164680257
Optimal_temp.:30-37 0.0022842118
Oxygen_Req:Aerobic 0.000780085185
Oxygen_Req:Facultative 1.141e-1040201
Pathogenic_in:Human 0.000730662213
Pathogenic_in:No 0.0004148102226
Shape:Coccus 0.00343632082
Shape:Irregular_coccus 0.00001411517
Shape:Rod 0.0002103109347
Shape:Sphere 0.00002301619
Temp._range:Hyperthermophilic 6.023e-61923
Temp._range:Mesophilic 0.0000368157473



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
PWY-5386 (methylglyoxal degradation I)3052150.4733
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181700.4648
AST-PWY (arginine degradation II (AST pathway))1201050.4027
GLYCOCAT-PWY (glycogen degradation I)2461750.4009
PWY-5194 (siroheme biosynthesis)3122070.4008



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG10830   EG10553   EG10552   
EG110700.9994510.9989940.998994
EG108300.9993480.999353
EG105530.999998
EG10552



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PAIRWISE BLAST SCORES:

  EG11070   EG10830   EG10553   EG10552   
EG110700.0f0---
EG10830-0.0f0--
EG10553--0.0f00
EG10552--00.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- TRNA-CHARGING-PWY (tRNA charging pathway) (degree of match pw to cand: 0.018, degree of match cand to pw: 0.500, average score: 0.559)
  Genes in pathway or complex:
             0.4347 0.3243 EG10071 (argS) ARGS-MONOMER (arginyl-tRNA synthetase)
             0.6164 0.0702 EG10196 (cysS) CYSS-MONOMER (cysteinyl-tRNA synthetase)
             0.6560 0.3329 EG10390 (glnS) GLNS-MONOMER (glutaminyl-tRNA synthetase)
             0.8065 0.3781 EG10407 (gltX) GLURS-MONOMER (glutamyl-tRNA synthetase)
             0.7249 0.5889 EG10492 (ileS) ILES-MONOMER (isoleucyl-tRNA synthetase)
             0.4046 0.1242 EG10532 (leuS) LEUS-MONOMER (leucyl-tRNA synthetase)
             0.8922 0.7768 EG11067 (valS) VALS-MONOMER (valyl-tRNA synthetase)
             0.6222 0.4114 EG10034 (alaS) ALAS-MONOMER (alanyl-tRNA synthetase)
             0.4317 0.0507 EG10094 (asnS) ASNS-MONOMER (asparaginyl-tRNA synthetase)
             0.3003 0.0040 EG10097 (aspS) ASPS-MONOMER (aspartyl-tRNA synthetase)
             0.4404 0.1908 EG11043 (tyrS) TYRS-MONOMER (tyrosyl-tRNA synthetase)
             0.5297 0.4664 EG11030 (trpS) TRPS-MONOMER (tryptophanyl-tRNA synthetase)
             0.3852 0.0451 EG11001 (thrS) THRS-MONOMER (threonyl-tRNA synthetase)
             0.6558 0.0550 EG10947 (serS) SERS-MONOMER (seryl-tRNA synthetase)
             0.5056 0.1893 EG10770 (proS) PROS-MONOMER (prolyl-tRNA synthetase)
             0.3607 0.0481 EG10710 (pheT) PHET-MONOMER (phenylalanyl-tRNA synthetase β-chain)
             0.3222 0.0576 EG10709 (pheS) PHES-MONOMER (phenylalanyl-tRNA synthetase α-chain)
             0.6122 0.0864 EG10586 (metG) METG-MONOMER (methionyl-tRNA synthetase)
   *in cand* 0.9996 0.9990 EG10553 (lysU) LYSU-MONOMER (lysyl-tRNA synthetase)
   *in cand* 0.9996 0.9990 EG10552 (lysS) LYSS-MONOMER (lysyl tRNA synthetase (LysRSs), constitutive)
             0.5923 0.2981 EG10453 (hisS) HISS-MONOMER (histidyl-tRNA synthetase)
             0.3036 0.0470 EG10409 (glyQ) GLYQ-MONOMER (glycyl-tRNA synthetase, α subunit)
             0.3100 0.0025 EG10410 (glyS) GLYS-MONOMER (glycyl-tRNA synthetase, β subunit)
                NIL    NIL EG30036 (glyT) glyT-tRNA (tRNAglyT)
                NIL    NIL EG30037 (glyU) glyU-tRNA (tRNAglyU)
                NIL    NIL EG30038 (glyV) glyV-tRNA (tRNAglyV)
                NIL    NIL EG30039 (glyW) glyW-tRNA (tRNAglyW)
                NIL    NIL EG30040 (glyX) glyX-tRNA (tRNAglyX)
                NIL    NIL EG30041 (glyY) glyY-tRNA (tRNAglyY)
                NIL    NIL EG30042 (hisR) hisR-tRNA (tRNAhisR)
                NIL    NIL EG30055 (lysT) lysT-tRNA (tRNAlysT)
                NIL    NIL EG30056 (lysV) lysV-tRNA (tRNAlysV)
                NIL    NIL EG30057 (lysW) lysW-tRNA (tRNAlysW)
                NIL    NIL G6390 (lysY) RNA0-301 (tRNAlysY)
                NIL    NIL G6391 (lysZ) RNA0-302 (tRNAlysZ)
                NIL    NIL G6392 (lysQ) RNA0-303 (tRNAlysQ)
                NIL    NIL EG30058 (metT) metT-tRNA (tRNAmetT)
                NIL    NIL EG30059 (metU) metU-tRNA (tRNAmetU)
                NIL    NIL EG31117 (metW) metW-tRNA (tRNAmetW)
                NIL    NIL EG30060 (metV) RNA0-306 (tRNAmetV)
                NIL    NIL EG30061 (metY) metY-tRNA (tRNAmetY)
                NIL    NIL EG30062 (metZ) metZ-tRNA (tRNAmetZ)
                NIL    NIL EG30064 (pheU) pheU-tRNA (tRNApheU)
                NIL    NIL EG30065 (pheV) pheV-tRNA (tRNApheV)
                NIL    NIL EG30066 (proK) proK-tRNA (tRNAproK)
                NIL    NIL EG30067 (proL) proL-tRNA (tRNAproL)
                NIL    NIL EG30068 (proM) proM-tRNA (tRNAproM)
                NIL    NIL EG30092 (selC) selC-tRNA (tRNAsec)
                NIL    NIL EG30093 (serT) serT-tRNA (tRNAserT)
                NIL    NIL EG30094 (serU) serU-tRNA (tRNAserU)
                NIL    NIL EG30095 (serV) serV-tRNA (tRNAserV)
                NIL    NIL EG30096 (serW) serW-tRNA (tRNAserW)
                NIL    NIL EG30097 (serX) serX-tRNA (tRNAserX)
                NIL    NIL EG30101 (thrT) thrT-tRNA (tRNAthrT)
                NIL    NIL EG30102 (thrU) thrU-tRNA (tRNAthrU)
                NIL    NIL EG30103 (thrV) thrV-tRNA (tRNAthrV)
                NIL    NIL EG30104 (thrW) thrW-tRNA (tRNAthrW)
                NIL    NIL EG30105 (trpT) trpT-tRNA (tRNAtrpT)
                NIL    NIL EG30106 (tyrT) tyrT-tRNA (tRNAtyrT)
                NIL    NIL EG30107 (tyrU) tyrU-tRNA (tRNAtyrU)
                NIL    NIL EG30108 (tyrV) tyrV-tRNA (tRNAtyrV)
                NIL    NIL EG30023 (aspT) aspT-tRNA (tRNAaspT)
                NIL    NIL EG30024 (aspU) aspU-tRNA (tRNAaspU)
                NIL    NIL EG30025 (aspV) aspV-tRNA (tRNAaspV)
                NIL    NIL EG30020 (asnT) asnT-tRNA (tRNAasnT)
                NIL    NIL EG30021 (asnU) asnU-tRNA (tRNAasnU)
                NIL    NIL EG30022 (asnV) asnV-tRNA (tRNAasnV)
                NIL    NIL G7069 (asnW) RNA0-304 (tRNAasnW)
                NIL    NIL EG30008 (alaT) alaT-tRNA (tRNAalaT)
                NIL    NIL EG30009 (alaU) alaU-tRNA (tRNAalaU)
                NIL    NIL EG30010 (alaV) alaV-tRNA (tRNAalaV)
                NIL    NIL EG30011 (alaW) alaW-tRNA (tRNAalaW)
                NIL    NIL EG30012 (alaX) alaX-tRNA (tRNAalaX)
                NIL    NIL EG30109 (valT) valT-tRNA (tRNAvalT)
                NIL    NIL EG30110 (valU) valU-tRNA (tRNAvalU)
                NIL    NIL EG30111 (valV) valV-tRNA (tRNAvalV)
                NIL    NIL EG30112 (valW) valW-tRNA (tRNAvalW)
                NIL    NIL EG30113 (valX) valX-tRNA (tRNAvalX)
                NIL    NIL EG30114 (valY) valY-tRNA (tRNAvalY)
                NIL    NIL G6389 (valZ) RNA0-300 (tRNAvalZ)
                NIL    NIL EG30047 (leuP) leuP-tRNA (tRNAleuP)
                NIL    NIL EG30048 (leuQ) leuQ-tRNA (tRNAleuQ)
                NIL    NIL EG30049 (leuT) leuT-tRNA (tRNAleuT)
                NIL    NIL EG30050 (leuU) leuU-tRNA (tRNAleuU)
                NIL    NIL EG30051 (leuV) leuV-tRNA (tRNAleuV)
                NIL    NIL EG30052 (leuW) leuW-tRNA (tRNAleuW)
                NIL    NIL EG30053 (leuX) leuX-tRNA (tRNAleuX)
                NIL    NIL EG30054 (leuZ) leuZ-tRNA (tRNAleuZ)
                NIL    NIL EG30043 (ileT) ileT-tRNA (tRNAileT)
                NIL    NIL EG30044 (ileU) ileU-tRNA (tRNAileU)
                NIL    NIL EG30045 (ileV) ileV-tRNA (tRNAileV)
                NIL    NIL EG30046 (ileX) ileX-tRNA (tRNAileX)
                NIL    NIL G7387 (ileY) RNA0-305 (tRNAileY)
                NIL    NIL EG30032 (gltT) gltT-tRNA (tRNAgltT)
                NIL    NIL EG30033 (gltU) gltU-tRNA (tRNAgltU)
                NIL    NIL EG30034 (gltV) gltV-tRNA (tRNAgltV)
                NIL    NIL EG30035 (gltW) gltW-tRNA (tRNAgltW)
                NIL    NIL EG30028 (glnU) glnU-tRNA (tRNAglnU)
                NIL    NIL EG30029 (glnV) glnV-tRNA (tRNAglnV)
                NIL    NIL EG30030 (glnW) glnW-tRNA (tRNAglnW)
                NIL    NIL EG30031 (glnX) glnX-tRNA (tRNAglnX)
                NIL    NIL G7991 (cysT) cysT-tRNA (tRNAcysT)
                NIL    NIL EG30013 (argQ) argQ-tRNA (tRNAargQ)
                NIL    NIL EG30014 (argU) argU-tRNA (tRNAargU)
                NIL    NIL EG30015 (argV) argV-tRNA (tRNAargV)
                NIL    NIL EG30016 (argW) argW-tRNA (tRNAargW)
                NIL    NIL EG30017 (argX) argX-tRNA (tRNAargX)
                NIL    NIL EG30018 (argY) argY-tRNA (tRNAargY)
                NIL    NIL EG30019 (argZ) argZ-tRNA (tRNAargZ)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9995 0.9993 EG10830 (recJ) EG10830-MONOMER (RecJ)
   *in cand* 0.9994 0.9990 EG11070 (dsbC) DSBCOX-MONOMER (DsbCoxidized)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10830 EG11070 (centered at EG11070)
EG10552 (centered at EG10552)
EG10553 (centered at EG10553)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  EG11070   EG10830   EG10553   EG10552   
178/623407/623380/623376/623
AAEO224324:0:Tyes-6830-
AAVE397945:0:Tyes02768313313
ABAC204669:0:Tyes-291000
ABAU360910:0:Tyes1714300
ABOR393595:0:Tyes0867864864
ABUT367737:0:Tyes--00
ACAU438753:0:Tyes-0--
ACRY349163:8:Tyes-0--
ADEH290397:0:Tyes-0--
AEHR187272:0:Tyes0327312312
AFER243159:0:Tyes-400
AHYD196024:0:Tyes109797
ALAI441768:0:Tyes--00
AMAR234826:0:Tyes-0--
AMAR329726:9:Tyes-025472547
AMET293826:0:Tyes-021812181
AORE350688:0:Tyes-126000
APHA212042:0:Tyes-0--
APLE416269:0:Tyes01348348
APLE434271:0:Tno01314314
ASAL382245:5:Tyes929300
ASP232721:1:Tyes0---
ASP232721:2:Tyes-16900
ASP62928:0:Tyes0806788788
ASP62977:0:Tyes02999753753
ASP76114:2:Tyes0100116131613
AVAR240292:3:Tyes-0779779
BABO262698:1:Tno-0--
BAMB339670:3:Tno0177217741774
BAMB398577:3:Tno0159515971597
BAMY326423:0:Tyes-237600
BANT260799:0:Tno-427000
BANT261594:2:Tno-420100
BANT568206:2:Tyes-443600
BANT592021:2:Tno-442600
BAPH198804:0:Tyes--00
BAPH372461:0:Tyes--00
BBAC264462:0:Tyes-0--
BBAC360095:0:Tyes-0--
BBRO257310:0:Tyes2345200
BCAN483179:1:Tno-0--
BCEN331271:0:Tno-200
BCEN331271:2:Tno0---
BCEN331272:3:Tyes0158715891589
BCER226900:1:Tyes-423400
BCER288681:0:Tno-413300
BCER315749:1:Tyes-290200
BCER405917:1:Tyes-418700
BCER572264:1:Tno-426000
BCIC186490:0:Tyes-011
BCLA66692:0:Tyes-149900
BFRA272559:1:Tyes-9900
BFRA295405:0:Tno-12300
BHAL272558:0:Tyes-121200
BHEN283166:0:Tyes-0--
BJAP224911:0:Fyes-0--
BLIC279010:0:Tyes-271000
BMAL243160:0:Tno0---
BMAL243160:1:Tno-022
BMAL320388:0:Tno0---
BMAL320388:1:Tno-022
BMAL320389:0:Tyes0---
BMAL320389:1:Tyes-022
BMEL224914:1:Tno-0--
BMEL359391:1:Tno-0--
BOVI236:1:Tyes-0--
BPAR257311:0:Tno2013200
BPER257313:0:Tyes1964200
BPET94624:0:Tyes0245824612461
BPSE272560:1:Tyes789011
BPSE320372:1:Tno889022
BPSE320373:1:Tno934022
BPUM315750:0:Tyes--00
BQUI283165:0:Tyes-0--
BSP107806:2:Tyes--00
BSP36773:2:Tyes0184518471847
BSP376:0:Tyes-0--
BSUB:0:Tyes-285300
BSUI204722:1:Tyes-0--
BSUI470137:1:Tno-0--
BTHA271848:1:Tno1011200
BTHE226186:0:Tyes-0--
BTHU281309:1:Tno-402900
BTHU412694:1:Tno-378700
BTRI382640:1:Tyes-0--
BVIE269482:4:Tyes0---
BVIE269482:7:Tyes-022
BWEI315730:4:Tyes-417900
CABO218497:0:Tyes-0--
CACE272562:1:Tyes-0987987
CAULO:0:Tyes-0--
CBEI290402:0:Tyes-413800
CBLO203907:0:Tyes--00
CBLO291272:0:Tno--00
CBOT36826:1:Tno-0745745
CBOT441770:0:Tyes-0830830
CBOT441771:0:Tno-0773773
CBOT441772:1:Tno-0832832
CBOT498213:1:Tno-0791791
CBOT508765:1:Tyes-55700
CBOT515621:2:Tyes-0785785
CBOT536232:0:Tno-0804804
CBUR227377:1:Tyes-7400
CBUR360115:1:Tno-8000
CBUR434922:2:Tno-07373
CCAV227941:1:Tyes-0--
CCHL340177:0:Tyes-0573573
CCON360104:2:Tyes--00
CCUR360105:0:Tyes--00
CDES477974:0:Tyes-72800
CDIF272563:1:Tyes-0817817
CFEL264202:1:Tyes-0--
CHOM360107:1:Tyes--0-
CHUT269798:0:Tyes-0--
CHYD246194:0:Tyes-0125125
CJAP155077:0:Tyes016810171017
CJEJ192222:0:Tyes--00
CJEJ195099:0:Tno--00
CJEJ354242:2:Tyes--00
CJEJ360109:0:Tyes--00
CJEJ407148:0:Tno--00
CKLU431943:1:Tyes-193300
CMUR243161:1:Tyes-0--
CNOV386415:0:Tyes-125300
CPER195102:1:Tyes-0457457
CPER195103:0:Tno-0408408
CPER289380:3:Tyes-0381381
CPHY357809:0:Tyes-026512651
CPNE115711:1:Tyes-0--
CPNE115713:0:Tno-0--
CPNE138677:0:Tno-0--
CPNE182082:0:Tno-0--
CPRO264201:0:Fyes-0--
CPSY167879:0:Tyes131200
CRUT413404:0:Tyes0411360360
CSAL290398:0:Tyes131000
CSP501479:8:Fyes-0--
CSP78:2:Tyes-0--
CTEP194439:0:Tyes-01008-
CTET212717:0:Tyes-141700
CTRA471472:0:Tyes-0--
CTRA471473:0:Tno-0--
CVES412965:0:Tyes-4500
CVIO243365:0:Tyes2105144800
DARO159087:0:Tyes67401010
DDES207559:0:Tyes-137100
DETH243164:0:Tyes-36700
DHAF138119:0:Tyes-227600
DNOD246195:0:Tyes6850331331
DOLE96561:0:Tyes-0755755
DPSY177439:2:Tyes-31000
DRAD243230:3:Tyes-0--
DRED349161:0:Tyes-57700
DSHI398580:5:Tyes-0--
DSP216389:0:Tyes-31900
DSP255470:0:Tno-33300
DVUL882:1:Tyes-014631463
ECAN269484:0:Tyes-0--
ECAR218491:0:Tyes0122
ECHA205920:0:Tyes-0--
ECOL199310:0:Tno1016391639
ECOL316407:0:Tno1012241224
ECOL331111:6:Tno1014121412
ECOL362663:0:Tno1014711471
ECOL364106:1:Tno1014331433
ECOL405955:2:Tyes1013171317
ECOL409438:6:Tyes1013131313
ECOL413997:0:Tno1012981298
ECOL439855:4:Tno1015031503
ECOL469008:0:Tno0133
ECOL481805:0:Tno0130913091
ECOL585034:0:Tno1013101310
ECOL585035:0:Tno1013961396
ECOL585055:0:Tno1014171417
ECOL585056:2:Tno3200
ECOL585057:0:Tno1012411241
ECOL585397:0:Tno3200
ECOL83334:0:Tno1013911391
ECOLI:0:Tno3212540
ECOO157:0:Tno1013521352
EFAE226185:3:Tyes--00
EFER585054:1:Tyes3200
ELIT314225:0:Tyes0925--
ERUM254945:0:Tyes-0--
ERUM302409:0:Tno-0--
ESP42895:1:Tyes2100
FJOH376686:0:Tyes-01347-
FMAG334413:1:Tyes-0176176
FNOD381764:0:Tyes-0842842
FNUC190304:0:Tyes-0--
FPHI484022:1:Tyes-0401401
FRANT:0:Tno-27200
FSUC59374:0:Tyes-0--
FTUL351581:0:Tno-0286286
FTUL393011:0:Tno-0246246
FTUL393115:0:Tyes-26600
FTUL401614:0:Tyes-39700
FTUL418136:0:Tno-0257257
FTUL458234:0:Tno-0254254
GBET391165:0:Tyes-0--
GFOR411154:0:Tyes--00
GKAU235909:1:Tyes-259000
GMET269799:1:Tyes289015131513
GOXY290633:5:Tyes-0--
GSUL243231:0:Tyes0175614141414
GTHE420246:1:Tyes-239500
GURA351605:0:Tyes824015071507
GVIO251221:0:Tyes-033563356
HACI382638:1:Tyes--00
HARS204773:0:Tyes0190519081908
HAUR316274:2:Tyes-0--
HCHE349521:0:Tyes0466
HDUC233412:0:Tyes192000
HHAL349124:0:Tyes19127400
HHEP235279:0:Tyes--00
HINF281310:0:Tyes2300
HINF374930:0:Tyes1033
HINF71421:0:Tno2300
HMOD498761:0:Tyes-0--
HNEP81032:0:Tyes-0--
HPY:0:Tno--00
HPYL357544:1:Tyes--00
HPYL85963:0:Tno--00
HSOM205914:1:Tyes1033
HSOM228400:0:Tno2300
ILOI283942:0:Tyes3200
JSP290400:1:Tyes-0--
JSP375286:0:Tyes0105610531053
KPNE272620:2:Tyes3200
LACI272621:0:Tyes--00
LBIF355278:2:Tyes--00
LBIF456481:2:Tno--00
LBOR355276:1:Tyes--00
LBOR355277:1:Tno--00
LBRE387344:2:Tyes--00
LCAS321967:1:Tyes--00
LCHO395495:0:Tyes021592121
LDEL321956:0:Tyes--00
LDEL390333:0:Tyes--00
LGAS324831:0:Tyes--00
LHEL405566:0:Tyes--00
LINN272626:1:Tno--00
LINT189518:1:Tyes--00
LINT267671:1:Tno--00
LINT363253:3:Tyes-0712712
LJOH257314:0:Tyes--00
LLAC272622:5:Tyes--00
LLAC272623:0:Tyes--00
LMES203120:1:Tyes-103800
LMON169963:0:Tno--00
LMON265669:0:Tyes--00
LPLA220668:0:Tyes--00
LPNE272624:0:Tno-0315315
LPNE297245:1:Fno-0167167
LPNE297246:1:Fyes-0321321
LPNE400673:0:Tno-0332332
LREU557436:0:Tyes--00
LSAK314315:0:Tyes--00
LSPH444177:1:Tyes-370400
LWEL386043:0:Tyes--00
MAER449447:0:Tyes-0663663
MAQU351348:2:Tyes5200
MCAP243233:0:Tyes25930800
MEXT419610:0:Tyes-0--
MFLA265072:0:Tyes1345126700
MLOT266835:2:Tyes-0--
MMAG342108:0:Tyes-0--
MMAR368407:0:Tyes--0-
MMAR394221:0:Tyes-0--
MPET420662:1:Tyes0215388
MSP266779:3:Tyes-0--
MSP400668:0:Tyes2678267200
MSP409:2:Tyes-0--
MSUC221988:0:Tyes1044
MTHE264732:0:Tyes-149300
MXAN246197:0:Tyes-03939
NARO279238:0:Tyes0112--
NEUR228410:0:Tyes1530023882388
NEUT335283:2:Tyes15420732732
NGON242231:0:Tyes9230938938
NHAM323097:2:Tyes-0--
NMEN122586:0:Tno0287841841
NMEN122587:0:Tyes0301842842
NMEN272831:0:Tno0274761761
NMEN374833:0:Tno0303832832
NMUL323848:3:Tyes1787016201620
NOCE323261:1:Tyes10380--
NSEN222891:0:Tyes-0--
NSP103690:6:Tyes-107300
NSP387092:0:Tyes--00
NWIN323098:0:Tyes-0--
OANT439375:5:Tyes-0--
OCAR504832:0:Tyes-0--
OIHE221109:0:Tyes-201800
OTSU357244:0:Fyes-0--
PAER208963:0:Tyes0133838
PAER208964:0:Tno362400
PARC259536:0:Tyes0477801801
PATL342610:0:Tyes10--
PCAR338963:0:Tyes83465500
PCRY335284:1:Tyes043911241124
PDIS435591:0:Tyes-158600
PENT384676:0:Tyes2818281000
PFLU205922:0:Tyes093434
PFLU216595:1:Tyes3630362300
PFLU220664:0:Tyes0183636
PGIN242619:0:Tyes-011491149
PHAL326442:1:Tyes0122
PING357804:0:Tyes10123123
PINT246198:1:Tyes-0--
PLUM243265:0:Fyes3200
PLUT319225:0:Tyes-0866-
PMAR167539:0:Tyes-0-811
PMAR167542:0:Tyes--0-
PMAR167546:0:Tyes--00
PMAR74546:0:Tyes---0
PMAR74547:0:Tyes-632-0
PMAR93060:0:Tyes---0
PMEN399739:0:Tyes25600
PMOB403833:0:Tyes-0--
PMUL272843:1:Tyes2300
PNAP365044:8:Tyes31720800
PPEN278197:0:Tyes--00
PPRO298386:2:Tyes0133
PPUT160488:0:Tno082626
PPUT351746:0:Tyes261800
PPUT76869:0:Tno082727
PRUM264731:0:Tyes-0--
PSP117:0:Tyes-0--
PSP296591:2:Tyes2482025942594
PSP312153:0:Tyes0135013521352
PSP56811:2:Tyes12290663663
PSTU379731:0:Tyes0155015451545
PSYR205918:0:Tyes092222
PSYR223283:2:Tyes092121
PTHE370438:0:Tyes-81600
RAKA293614:0:Fyes-0--
RALB246199:0:Tyes-0892892
RBEL336407:0:Tyes-0--
RBEL391896:0:Fno-0--
RCAN293613:0:Fyes-0--
RCAS383372:0:Tyes-0--
RCON272944:0:Tno-0--
RDEN375451:4:Tyes-0--
RETL347834:5:Tyes-0--
REUT264198:3:Tyes1986400
REUT381666:2:Tyes2092400
RFEL315456:2:Tyes-0--
RFER338969:1:Tyes01659209209
RLEG216596:6:Tyes-0--
RMAS416276:1:Tyes-0--
RMET266264:2:Tyes2142400
RPAL258594:0:Tyes-0--
RPAL316055:0:Tyes-0--
RPAL316056:0:Tyes-0--
RPAL316057:0:Tyes-0--
RPAL316058:0:Tyes-0--
RPOM246200:1:Tyes-0--
RPRO272947:0:Tyes-0--
RRIC392021:0:Fno-0--
RRIC452659:0:Tyes-0--
RRUB269796:1:Tyes-0--
RSOL267608:1:Tyes19109300
RSP357808:0:Tyes-1905-0
RSPH272943:4:Tyes-0--
RSPH349101:2:Tno-0--
RSPH349102:5:Tyes-0--
RTYP257363:0:Tno-0--
SACI56780:0:Tyes12420787787
SAGA205921:0:Tno--00
SAGA208435:0:Tno--00
SAGA211110:0:Tyes--00
SALA317655:1:Tyes-0--
SAUR158878:1:Tno-113500
SAUR158879:1:Tno-104000
SAUR196620:0:Tno-113500
SAUR273036:0:Tno-102300
SAUR282458:0:Tno-116300
SAUR282459:0:Tno-111700
SAUR359786:1:Tno-116000
SAUR359787:1:Tno-116100
SAUR367830:3:Tno-108100
SAUR418127:0:Tyes-112700
SAUR426430:0:Tno-107700
SAUR93061:0:Fno-119300
SAUR93062:1:Tno-110100
SBAL399599:3:Tyes282700
SBAL402882:1:Tno323100
SBOY300268:1:Tyes0133
SDEG203122:0:Tyes0599
SDEN318161:0:Tyes0124452445
SDYS300267:1:Tyes0133
SELO269084:0:Tyes-52900
SENT209261:0:Tno2100
SENT220341:0:Tno2100
SENT295319:0:Tno2100
SENT321314:2:Tno3200
SENT454169:2:Tno3200
SEPI176279:1:Tyes-102300
SEPI176280:0:Tno-010141014
SFLE198214:0:Tyes2100
SFLE373384:0:Tno2100
SFUM335543:0:Tyes-12900
SGLO343509:3:Tyes3200
SGOR29390:0:Tyes--00
SHAE279808:0:Tyes-012221222
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