CANDIDATE ID: 981

CANDIDATE ID: 981

NUMBER OF GENES: 4
AVERAGE SCORE:    9.9943750e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    2.5000037e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- EG12210 (waaF) (b3620)
   Products of gene:
     - EG12210-MONOMER (ADP-heptose:LPS heptosyltransferase II)
       Reactions:
        heptosyl-KDO2-lipid A + ADP-L-glycero-beta-D-manno-heptose  ->  heptosyl2-KDO2-lipid A + ADP + H+
         In pathways
         LPSSYN-PWY (superpathway of lipopolysaccharide biosynthesis)
         LIPA-CORESYN-PWY (Lipid A-core biosynthesis)

- EG11341 (waaQ) (b3632)
   Products of gene:
     - EG11341-MONOMER (lipopolysaccharide core heptosyl transferase III)
       Reactions:
        glucosyl-heptosyl2-KDO2-lipid A-phosphate + ADP-L-glycero-beta-D-manno-heptose  ->  glucosyl-heptosyl3-KDO2-lipid A-phosphate + ADP + H+
         In pathways
         LPSSYN-PWY (superpathway of lipopolysaccharide biosynthesis)
         LIPA-CORESYN-PWY (Lipid A-core biosynthesis)

- EG11189 (waaC) (b3621)
   Products of gene:
     - EG11189-MONOMER (ADP-heptose:LPS heptosyl transferase I)
       Reactions:
        KDO2-lipid A + ADP-L-glycero-beta-D-manno-heptose + 2 H+  ->  heptosyl-KDO2-lipid A + ADP
         In pathways
         LPSSYN-PWY (superpathway of lipopolysaccharide biosynthesis)
         LIPA-CORESYN-PWY (Lipid A-core biosynthesis)
        alpha-KDO-(2->4)-alpha-KDO-(2->6)-lipid IVA + ADP-L-glycero-beta-D-manno-heptose  =  heptosyl-KDO2-lipid IVA + ADP + H+

- EG10520 (waaA) (b3633)
   Products of gene:
     - KDOTRANS-MONOMER (KDO transferase)
       Reactions:
        (KDO)-lipid IVA + CMP-3-deoxy-D-manno-octulosonate  =  alpha-KDO-(2->4)-alpha-KDO-(2->6)-lipid IVA + CMP + H+
         In pathways
         PWY-6467 (PWY-6467)
         KDO-NAGLIPASYN-PWY (superpathway of KDO2-lipid A biosynthesis)
         LPSSYN-PWY (superpathway of lipopolysaccharide biosynthesis)
         KDOSYN-PWY (KDO transfer to lipid IVA I)
        CMP-3-deoxy-D-manno-octulosonate + lipid IVA  =  (KDO)-lipid IVA + CMP + H+
         In pathways
         PWY-6467 (PWY-6467)
         KDO-NAGLIPASYN-PWY (superpathway of KDO2-lipid A biosynthesis)
         LPSSYN-PWY (superpathway of lipopolysaccharide biosynthesis)
         KDOSYN-PWY (KDO transfer to lipid IVA I)



Back to top


ORGANISMS CONTAINING AT LEAST 3 GENES FROM THE GROUP:

Total number of orgs: 216
Effective number of orgs (counting one per cluster within 468 clusters): 149

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317584
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329534
YPES386656 ncbi Yersinia pestis Pestoides F4
YPES377628 ncbi Yersinia pestis Nepal5164
YPES360102 ncbi Yersinia pestis Antiqua4
YPES349746 ncbi Yersinia pestis Angola4
YPES214092 ncbi Yersinia pestis CO924
YPES187410 ncbi Yersinia pestis KIM 104
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80814
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A3
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103313
XAUT78245 ncbi Xanthobacter autotrophicus Py23
WSUC273121 ncbi Wolinella succinogenes DSM 17404
VVUL216895 ncbi Vibrio vulnificus CMCP64
VVUL196600 ncbi Vibrio vulnificus YJ0164
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106333
VFIS312309 ncbi Vibrio fischeri ES1144
VCHO345073 ncbi Vibrio cholerae O3954
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169614
TTUR377629 ncbi Teredinibacter turnerae T79013
TROS309801 ncbi Thermomicrobium roseum DSM 51593
TFUS269800 ncbi Thermobifida fusca YX3
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12514
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252594
TCRU317025 ncbi Thiomicrospira crunogena XCL-23
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT24
SSP94122 ncbi Shewanella sp. ANA-34
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)3
SSON300269 ncbi Shigella sonnei Ss0464
SSED425104 ncbi Shewanella sediminis HAW-EB33
SPRO399741 ncbi Serratia proteamaculans 5684
SPEA398579 ncbi Shewanella pealeana ATCC 7003453
SONE211586 ncbi Shewanella oneidensis MR-13
SLOI323850 ncbi Shewanella loihica PV-43
SHIGELLA ncbi Shigella flexneri 2a str. 2457T4
SHAL458817 ncbi Shewanella halifaxensis HAW-EB44
SGLO343509 ncbi Sodalis glossinidius morsitans4
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB4
SFLE373384 ncbi Shigella flexneri 5 str. 84014
SFLE198214 ncbi Shigella flexneri 2a str. 3014
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23383
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4764
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B674
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91504
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT184
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty24
SDYS300267 ncbi Shigella dysenteriae Sd1974
SDEN318161 ncbi Shewanella denitrificans OS2174
SDEG203122 ncbi Saccharophagus degradans 2-403
SBOY300268 ncbi Shigella boydii Sb2274
SBAL402882 ncbi Shewanella baltica OS1853
SBAL399599 ncbi Shewanella baltica OS1953
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99413
RSOL267608 ncbi Ralstonia solanacearum GMI10003
RPAL316058 ncbi Rhodopseudomonas palustris HaA23
RPAL316057 ncbi Rhodopseudomonas palustris BisB53
RPAL316056 ncbi Rhodopseudomonas palustris BisB183
RPAL316055 ncbi Rhodopseudomonas palustris BisA534
RPAL258594 ncbi Rhodopseudomonas palustris CGA0093
RMET266264 ncbi Ralstonia metallidurans CH343
RFER338969 ncbi Rhodoferax ferrireducens T1183
REUT381666 ncbi Ralstonia eutropha H163
REUT264198 ncbi Ralstonia eutropha JMP1344
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30004
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a4
PSTU379731 ncbi Pseudomonas stutzeri A15014
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-14
PSP296591 ncbi Polaromonas sp. JS6663
PPUT76869 ncbi Pseudomonas putida GB-14
PPUT351746 ncbi Pseudomonas putida F14
PPUT160488 ncbi Pseudomonas putida KT24404
PPRO298386 ncbi Photobacterium profundum SS93
PNAP365044 ncbi Polaromonas naphthalenivorans CJ23
PMUL272843 ncbi Pasteurella multocida multocida Pm704
PMEN399739 ncbi Pseudomonas mendocina ymp4
PLUT319225 ncbi Chlorobium luteolum DSM 2733
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO14
PING357804 ncbi Psychromonas ingrahamii 374
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1253
PFLU220664 ncbi Pseudomonas fluorescens Pf-54
PFLU216595 ncbi Pseudomonas fluorescens SBW254
PFLU205922 ncbi Pseudomonas fluorescens Pf0-14
PENT384676 ncbi Pseudomonas entomophila L484
PCAR338963 ncbi Pelobacter carbinolicus DSM 23804
PAER208964 ncbi Pseudomonas aeruginosa PAO13
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA143
OCAR504832 ncbi Oligotropha carboxidovorans OM54
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2553
NOCE323261 ncbi Nitrosococcus oceani ATCC 197074
NMUL323848 ncbi Nitrosospira multiformis ATCC 251963
NMEN374833 ncbi Neisseria meningitidis 0534423
NMEN272831 ncbi Neisseria meningitidis FAM183
NMEN122587 ncbi Neisseria meningitidis Z24913
NMEN122586 ncbi Neisseria meningitidis MC583
NHAM323097 ncbi Nitrobacter hamburgensis X144
NGON242231 ncbi Neisseria gonorrhoeae FA 10903
MXAN246197 ncbi Myxococcus xanthus DK 16223
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E4
MSP400668 ncbi Marinomonas sp. MWYL14
MPET420662 ncbi Methylibium petroleiphilum PM14
MLOT266835 ncbi Mesorhizobium loti MAFF3030994
MFLA265072 ncbi Methylobacillus flagellatus KT4
MCAP243233 ncbi Methylococcus capsulatus Bath4
MAVI243243 ncbi Mycobacterium avium 1043
MAQU351348 ncbi Marinobacter aquaeolei VT84
LPNE400673 ncbi Legionella pneumophila Corby3
LPNE297246 ncbi Legionella pneumophila Paris4
LPNE297245 ncbi Legionella pneumophila Lens4
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 14
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-003
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1304
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566014
LCHO395495 ncbi Leptothrix cholodnii SP-64
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1974
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5504
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)3
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)3
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785784
HSOM228400 ncbi Haemophilus somnus 23364
HSOM205914 ncbi Haemophilus somnus 129PT4
HPYL85963 ncbi Helicobacter pylori J994
HPYL357544 ncbi Helicobacter pylori HPAG14
HPY ncbi Helicobacter pylori 266954
HINF71421 ncbi Haemophilus influenzae Rd KW203
HINF374930 ncbi Haemophilus influenzae PittEE4
HINF281310 ncbi Haemophilus influenzae 86-028NP4
HHEP235279 ncbi Helicobacter hepaticus ATCC 514493
HDUC233412 ncbi Haemophilus ducreyi 35000HP4
HCHE349521 ncbi Hahella chejuensis KCTC 23964
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237793
HACI382638 ncbi Helicobacter acinonychis Sheeba4
GURA351605 ncbi Geobacter uraniireducens Rf44
GSUL243231 ncbi Geobacter sulfurreducens PCA4
GOXY290633 ncbi Gluconobacter oxydans 621H3
GMET269799 ncbi Geobacter metallireducens GS-154
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255864
FALN326424 ncbi Frankia alni ACN14a3
ESP42895 Enterobacter sp.4
EFER585054 ncbi Escherichia fergusonii ATCC 354694
ECOO157 ncbi Escherichia coli O157:H7 EDL9334
ECOL83334 Escherichia coli O157:H74
ECOL585397 ncbi Escherichia coli ED1a4
ECOL585057 ncbi Escherichia coli IAI394
ECOL585056 ncbi Escherichia coli UMN0264
ECOL585055 ncbi Escherichia coli 559894
ECOL585035 ncbi Escherichia coli S884
ECOL585034 ncbi Escherichia coli IAI14
ECOL481805 ncbi Escherichia coli ATCC 87394
ECOL469008 ncbi Escherichia coli BL21(DE3)4
ECOL439855 ncbi Escherichia coli SMS-3-54
ECOL413997 ncbi Escherichia coli B str. REL6064
ECOL409438 ncbi Escherichia coli SE114
ECOL405955 ncbi Escherichia coli APEC O14
ECOL364106 ncbi Escherichia coli UTI894
ECOL362663 ncbi Escherichia coli 5364
ECOL331111 ncbi Escherichia coli E24377A4
ECOL316407 ncbi Escherichia coli K-12 substr. W31104
ECOL199310 ncbi Escherichia coli CFT0734
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10434
DNOD246195 ncbi Dichelobacter nodosus VCS1703A4
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G204
DARO159087 ncbi Dechloromonas aromatica RCB4
CVIO243365 ncbi Chromobacterium violaceum ATCC 124724
CTEP194439 ncbi Chlorobium tepidum TLS3
CSP78 Caulobacter sp.4
CSAL290398 ncbi Chromohalobacter salexigens DSM 30434
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE254
CJEJ407148 ncbi Campylobacter jejuni jejuni 811163
CJEJ360109 ncbi Campylobacter jejuni doylei 269.973
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1763
CJEJ195099 ncbi Campylobacter jejuni RM12213
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111684
CJAP155077 Cellvibrio japonicus3
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334063
CFET360106 ncbi Campylobacter fetus fetus 82-404
CCUR360105 ncbi Campylobacter curvus 525.924
CCON360104 ncbi Campylobacter concisus 138264
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1114
CBUR360115 ncbi Coxiella burnetii RSA 3314
CBUR227377 ncbi Coxiella burnetii RSA 4934
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN3
CBLO203907 ncbi Candidatus Blochmannia floridanus3
CAULO ncbi Caulobacter crescentus CB153
BVIE269482 ncbi Burkholderia vietnamiensis G44
BTHA271848 ncbi Burkholderia thailandensis E2644
BSP36773 Burkholderia sp.4
BPSE320373 ncbi Burkholderia pseudomallei 6684
BPSE320372 ncbi Burkholderia pseudomallei 1710b4
BPSE272560 ncbi Burkholderia pseudomallei K962434
BPET94624 Bordetella petrii4
BPER257313 ncbi Bordetella pertussis Tohama I3
BPAR257311 ncbi Bordetella parapertussis 128223
BMAL320389 ncbi Burkholderia mallei NCTC 102474
BMAL320388 ncbi Burkholderia mallei SAVP14
BMAL243160 ncbi Burkholderia mallei ATCC 233444
BCEN331272 ncbi Burkholderia cenocepacia HI24244
BCEN331271 ncbi Burkholderia cenocepacia AU 10544
BBRO257310 ncbi Bordetella bronchiseptica RB503
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1004
BAMB398577 ncbi Burkholderia ambifaria MC40-64
BAMB339670 ncbi Burkholderia ambifaria AMMD4
ASP76114 ncbi Aromatoleum aromaticum EbN14
ASP62928 ncbi Azoarcus sp. BH724
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4494
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL034
APLE416269 ncbi Actinobacillus pleuropneumoniae L204
AHYD196024 Aeromonas hydrophila dhakensis4
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232703
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-14
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C4
ACAU438753 ncbi Azorhizobium caulinodans ORS 5713
ABUT367737 ncbi Arcobacter butzleri RM40184
ABOR393595 ncbi Alcanivorax borkumensis SK24
ABAU360910 ncbi Bordetella avium 197N3
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3454
AAEO224324 ncbi Aquifex aeolicus VF54


Names of the homologs of the genes in the group in each of these orgs
  EG12210   EG11341   EG11189   EG10520   
YPSE349747 YPSIP31758_0069YPSIP31758_3516YPSIP31758_0068YPSIP31758_0067
YPSE273123 YPTB0054YPTB0555YPTB0053YPTB0052
YPES386656 YPDSF_3848YPDSF_3215YPDSF_3849YPDSF_3850
YPES377628 YPN_3793YPN_0287YPN_3794YPN_3795
YPES360102 YPA_3485YPA_3868YPA_3486YPA_3487
YPES349746 YPANGOLA_A0063YPANGOLA_A0852YPANGOLA_A0062YPANGOLA_A0061
YPES214092 YPO0057YPO0416YPO0056YPO0055
YPES187410 Y0084Y3763Y0085Y0086
YENT393305 YE0071YE0531YE0070YE0069
XORY360094 XOOORF_4290XOOORF_4290XOOORF_4476
XORY291331 XOO1056XOO1056XOO0926
XAUT78245 XAUT_3770XAUT_3771XAUT_1482
WSUC273121 WS1450WS1906WS1909WS2116
VVUL216895 VV1_0798VV1_0816VV1_0816VV1_0799
VVUL196600 VV0325VV0295VV0295VV0324
VPAR223926 VP0212VP0194VP0211
VFIS312309 VF0139VF0135VF0135VF0138
VCHO345073 VC0395_A2616VC0395_A2606VC0395_A2606VC0395_A2613
VCHO VC0236VC0225VC0225VC0233
TTUR377629 TERTU_0700TERTU_0700TERTU_3964
TROS309801 TRD_0660TRD_0659TRD_0660
TFUS269800 TFU_0894TFU_0894TFU_0894
TDEN326298 TMDEN_0582TMDEN_0589TMDEN_0589TMDEN_0446
TDEN292415 TBD_1870TBD_0742TBD_0742TBD_2698
TCRU317025 TCR_1516TCR_1516TCR_0502
STYP99287 STM3711STM3723STM3712STM3724
SSP94122 SHEWANA3_4100SHEWANA3_4100SHEWANA3_4100SHEWANA3_4102
SSP321332 CYB_1980CYB_0460CYB_0336
SSON300269 SSO_3785SSO_3775SSO_3784SSO_3774
SSED425104 SSED_0109SSED_0109SSED_0104
SPRO399741 SPRO_4826SPRO_4832SPRO_4827SPRO_4836
SPEA398579 SPEA_0111SPEA_0111SPEA_0109
SONE211586 SO_4678SO_4678SO_4676
SLOI323850 SHEW_3702SHEW_3702SHEW_3707
SHIGELLA RFAFWAAQRFACKDTA
SHAL458817 SHAL_2293SHAL_4211SHAL_4211SHAL_4213
SGLO343509 SG2194SG2201SG2195SG2203
SFUM335543 SFUM_0377SFUM_0370SFUM_0375SFUM_3752
SFLE373384 SFV_3908SFV_3899SFV_3907SFV_3896
SFLE198214 AAN45107.1AAN45116.1AAN45108.1AAN45119.1
SERY405948 SACE_5567SACE_5567SACE_5567
SENT454169 SEHA_C4036SEHA_C4048SEHA_C4037SEHA_C4050
SENT321314 SCH_3634SCH_3646SCH_3635SCH_3647
SENT295319 SPA3563SPA3575SPA3564SPA3576
SENT220341 STY4084STY4071STY4083STY4070
SENT209261 T3808T3795T3807T3794
SDYS300267 SDY_4052SDY_4062SDY_4053SDY_4063
SDEN318161 SDEN_3611SDEN_3611SDEN_3611SDEN_3613
SDEG203122 SDE_1100SDE_1100SDE_0386
SBOY300268 SBO_3625SBO_3634SBO_3626SBO_3635
SBAL402882 SHEW185_4336SHEW185_4336SHEW185_4338
SBAL399599 SBAL195_4476SBAL195_4476SBAL195_4478
RXYL266117 RXYL_0710RXYL_0715RXYL_0710
RSOL267608 RSC0565RSC0692RSC0693
RPAL316058 RPB_1601RPB_1598RPB_1855
RPAL316057 RPD_1613RPD_1610RPD_4109
RPAL316056 RPC_1430RPC_1428RPC_4705
RPAL316055 RPE_1451RPE_1449RPE_1449RPE_0880
RPAL258594 RPA3986RPA3989RPA1158
RMET266264 RMET_0491RMET_2715RMET_2714
RFER338969 RFER_0508RFER_2998RFER_2997
REUT381666 H16_A0559H16_A2884H16_A2883
REUT264198 REUT_A0545REUT_B4383REUT_A0746REUT_A0747
PSYR223283 PSPTO_5003PSPTO_5003PSPTO_5002PSPTO_4978
PSYR205918 PSYR_0520PSYR_0520PSYR_0521PSYR_0542
PSTU379731 PST_3849PST_3849PST_3848PST_3818
PSP312153 PNUC_1820PNUC_0607PNUC_0257PNUC_1793
PSP296591 BPRO_0205BPRO_1640BPRO_1641
PPUT76869 PPUTGB1_0369PPUTGB1_0369PPUTGB1_0370PPUTGB1_4977
PPUT351746 PPUT_0366PPUT_0366PPUT_0367PPUT_4800
PPUT160488 PP_0341PP_0341PP_0342PP_4928
PPRO298386 PBPRA0209PBPRA0209PBPRA0211
PNAP365044 PNAP_0149PNAP_1109PNAP_1110
PMUL272843 PM1844PM1302PM1843PM1305
PMEN399739 PMEN_0579PMEN_0579PMEN_0580PMEN_0611
PLUT319225 PLUT_1796PLUT_1800PLUT_0586
PLUM243265 PLU4848PLU4853PLU4849PLU4854
PING357804 PING_0334PING_0329PING_0329PING_0332
PHAL326442 PSHAA2318PSHAA2318PSHAA2325
PFLU220664 PFL_0511PFL_0511PFL_0512PFL_0536
PFLU216595 PFLU0462PFLU0462PFLU0463PFLU0490
PFLU205922 PFL_0465PFL_0465PFL_0466PFL_0490
PENT384676 PSEEN5143PSEEN5142PSEEN5142PSEEN4980
PCAR338963 PCAR_1263PCAR_1263PCAR_1264PCAR_1260
PAER208964 PA5012PA5011PA4988
PAER208963 PA14_66250PA14_66240PA14_65960
OCAR504832 OCAR_5333OCAR_5883OCAR_5330OCAR_7252
NWIN323098 NWI_1069NWI_1066NWI_2556
NOCE323261 NOC_0561NOC_0578NOC_0578NOC_2615
NMUL323848 NMUL_A1791NMUL_A1783NMUL_A1783
NMEN374833 NMCC_1433NMCC_2115NMCC_0016
NMEN272831 NMC1456NMC2134NMC2152
NMEN122587 NMA1727NMA0243NMA0261
NMEN122586 NMB_1527NMB_2156NMB_0014
NHAM323097 NHAM_1297NHAM_1297NHAM_1294NHAM_3178
NGON242231 NGO0987NGO1934NGO1915
MXAN246197 MXAN_4707MXAN_4707MXAN_4714
MSUC221988 MS2260MS1962MS2259MS1952
MSP400668 MMWYL1_3478MMWYL1_1695MMWYL1_1695MMWYL1_3473
MPET420662 MPE_A3550MPE_A2764MPE_A2764MPE_A2140
MLOT266835 MLR2566MLR2566MLR2567MLR8269
MFLA265072 MFLA_0768MFLA_0753MFLA_0753MFLA_2536
MCAP243233 MCA_2713MCA_2713MCA_2713MCA_2034
MAVI243243 MAV_4091MAV_4091MAV_4091
MAQU351348 MAQU_0789MAQU_0785MAQU_0785MAQU_0801
LPNE400673 LPC_0441LPC_0441LPC_1808
LPNE297246 LPP2749LPP2749LPP2749LPP2288
LPNE297245 LPL2622LPL2622LPL2622LPL2261
LPNE272624 LPG2695LPG2695LPG2695LPG2340
LINT363253 LI0698LI0092LI0681
LINT267671 LIC_11312LIC_11312LIC_11312LIC_12280
LINT189518 LA2688LA2688LA2173LA1476
LCHO395495 LCHO_0976LCHO_0976LCHO_0968LCHO_2442
LBOR355277 LBJ_1021LBJ_1021LBJ_1845LBJ_0976
LBOR355276 LBL_2013LBL_2013LBL_1439LBL_2057
LBIF456481 LEPBI_I1789LEPBI_I1789LEPBI_I1003
LBIF355278 LBF_1736LBF_1736LBF_0971
KPNE272620 GKPORF_B3325GKPORF_B3331GKPORF_B3326GKPORF_B3335
HSOM228400 HSM_0398HSM_0398HSM_0399HSM_0421
HSOM205914 HS_1612HS_1612HS_1611HS_1590
HPYL85963 JHP1116JHP0264JHP0264JHP0891
HPYL357544 HPAG1_1132HPAG1_0281HPAG1_0281HPAG1_0941
HPY HP1191HP0279HP0279HP0957
HINF71421 HI_1105HI_0261HI_0652
HINF374930 CGSHIEE_06535CGSHIEE_06535CGSHIEE_06535CGSHIEE_08940
HINF281310 NTHI1272NTHI0368NTHI1272NTHI0772
HHEP235279 HH_1808HH_0983HH_0640
HDUC233412 HD_0653HD_0445HD_0445HD_0454
HCHE349521 HCH_01046HCH_01054HCH_01047HCH_05997
HAUR316274 HAUR_3431HAUR_3431HAUR_3431
HACI382638 HAC_1567HAC_0537HAC_0537HAC_1033
GURA351605 GURA_3226GURA_3215GURA_3214GURA_3229
GSUL243231 GSU_2256GSU_2252GSU_2242GSU_2259
GOXY290633 GOX0821GOX1962GOX1985
GMET269799 GMET_2345GMET_2345GMET_2331GMET_2348
FNUC190304 FN0546FN0546FN0546FN1606
FALN326424 FRAAL3929FRAAL3929FRAAL3929
ESP42895 ENT638_0116ENT638_0114ENT638_0115ENT638_0107
EFER585054 EFER_3909EFER_3923EFER_3910EFER_3924
ECOO157 RFAFWAAQRFACKDTA
ECOL83334 ECS4498ECS4507ECS4499ECS4508
ECOL585397 ECED1_4306ECED1_4315ECED1_4307ECED1_4316
ECOL585057 ECIAI39_4140ECIAI39_4150ECIAI39_4141ECIAI39_4151
ECOL585056 ECUMN_4137ECUMN_4146ECUMN_4138ECUMN_4147
ECOL585055 EC55989_4087EC55989_4096EC55989_4088EC55989_4097
ECOL585035 ECS88_4036ECS88_4046ECS88_4037ECS88_4047
ECOL585034 ECIAI1_3792ECIAI1_3802ECIAI1_3793ECIAI1_3803
ECOL481805 ECOLC_0089ECOLC_0079ECOLC_0088ECOLC_0078
ECOL469008 ECBD_0106ECBD_0094ECBD_0105ECBD_0093
ECOL439855 ECSMS35_3957ECSMS35_3967ECSMS35_3958ECSMS35_3968
ECOL413997 ECB_03477ECB_03489ECB_03478ECB_03490
ECOL409438 ECSE_3903ECSE_3912ECSE_3904ECSE_3913
ECOL405955 APECO1_2836APECO1_2826APECO1_2835APECO1_2825
ECOL364106 UTI89_C4165UTI89_C4175UTI89_C4166UTI89_C4176
ECOL362663 ECP_3720ECP_3730ECP_3721ECP_3731
ECOL331111 ECE24377A_4123ECE24377A_4133ECE24377A_4124ECE24377A_4134
ECOL316407 ECK3610:JW3595:B3620ECK3622:JW3607:B3632ECK3611:JW3596:B3621ECK3623:JW3608:B3633
ECOL199310 C4446C4456C4447C4457
ECAR218491 ECA0164ECA0160ECA0163ECA0151
DNOD246195 DNO_0888DNO_0888DNO_1031DNO_1296
DDES207559 DDE_1482DDE_1482DDE_1629DDE_0367
DARO159087 DARO_3296DARO_0152DARO_3928DARO_3927
CVIO243365 CV_2092CV_0822CV_0226CV_0225
CTEP194439 CT_2137CT_2137CT_0593
CSP78 CAUL_1197CAUL_1197CAUL_1197CAUL_4541
CSAL290398 CSAL_0009CSAL_0016CSAL_0016CSAL_0018
CPRO264201 PC0017PC0017PC0707PC0827
CJEJ407148 C8J_1092C8J_1073C8J_0674
CJEJ360109 JJD26997_0580JJD26997_0588JJD26997_1299
CJEJ354242 CJJ81176_1164CJJ81176_1150CJJ81176_0730
CJEJ195099 CJE_1283CJE_1275CJE_0807
CJEJ192222 CJ1148CJ1133CJ1133CJ0707
CJAP155077 CJA_0502CJA_1369CJA_2916
CHUT269798 CHU_1683CHU_1683CHU_2726
CFET360106 CFF8240_1411CFF8240_1403CFF8240_1399CFF8240_1043
CCUR360105 CCV52592_1237CCV52592_1231CCV52592_1228CCV52592_0673
CCON360104 CCC13826_0479CCC13826_0473CCC13826_0470CCC13826_1436
CBUR434922 COXBU7E912_0337COXBU7E912_2105COXBU7E912_2105COXBU7E912_2045
CBUR360115 COXBURSA331_A1852COXBURSA331_A0081COXBURSA331_A0081COXBURSA331_A0134
CBUR227377 CBU_1661CBU_2004CBU_2004CBU_0063
CBLO291272 BPEN_631BPEN_632BPEN_633
CBLO203907 BFL608BFL609BFL610
CAULO CC0386CC0386CC0302
BVIE269482 BCEP1808_2748BCEP1808_2400BCEP1808_0827BCEP1808_0829
BTHA271848 BTH_I0658BTH_I0990BTH_I1490BTH_I1492
BSP36773 BCEP18194_A5964BCEP18194_A5653BCEP18194_A4000BCEP18194_A4002
BPSE320373 BURPS668_0828BURPS668_1203BURPS668_3082BURPS668_3080
BPSE320372 BURPS1710B_A1043BURPS1710B_A1434BURPS1710B_A3405BURPS1710B_A3403
BPSE272560 BPSL0791BPSL1123BPSL2665BPSL2663
BPET94624 BPET2385BPET2388BPET4813BPET4812
BPER257313 BP2322BP0094BP0095
BPAR257311 BPP1717BPP0156BPP0157
BMAL320389 BMA10247_0032BMA10247_0333BMA10247_2063BMA10247_2061
BMAL320388 BMASAVP1_A0586BMASAVP1_A1050BMASAVP1_A0717BMASAVP1_A0719
BMAL243160 BMA_0291BMA_1907BMA_2190BMA_2188
BCEN331272 BCEN2424_2633BCEN2424_2311BCEN2424_0894BCEN2424_0896
BCEN331271 BCEN_2022BCEN_1699BCEN_0415BCEN_0417
BBRO257310 BB3391BB0156BB0157
BBAC264462 BD2366BD1504BD2366BD2367
BAMB398577 BAMMC406_2553BAMMC406_2230BAMMC406_0784BAMMC406_0786
BAMB339670 BAMB_2680BAMB_2350BAMB_0773BAMB_0775
ASP76114 EBA3998EBA6912EBA3997EBA1636
ASP62928 AZO3565AZO1806AZO3566AZO0851
ASAL382245 ASA_4220ASA_0037ASA_0037ASA_4219
APLE434271 APJL_1428APJL_0187APJL_1427APJL_1151
APLE416269 APL_1403APL_0186APL_1402APL_1132
AHYD196024 AHA_0169AHA_0042AHA_0042AHA_0170
AFER243159 AFE_2887AFE_2793AFE_2791
AEHR187272 MLG_2792MLG_2806MLG_2806MLG_2637
ADEH290397 ADEH_2614ADEH_3562ADEH_2614ADEH_2615
ACAU438753 AZC_2251AZC_2252AZC_2382
ABUT367737 ABU_1800ABU_1800ABU_1822ABU_1976
ABOR393595 ABO_2300ABO_2215ABO_2298ABO_2501
ABAU360910 BAV2230BAV0125BAV0126
ABAC204669 ACID345_4721ACID345_4721ACID345_4721ACID345_4718
AAEO224324 AQ_145AQ_145AQ_145AQ_326


Organism features enriched in list (features available for 209 out of the 216 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00012191892
Arrangment:Singles 0.0000706124286
Disease:Bubonic_plague 0.002026066
Disease:Dysentery 0.002026066
Disease:Gastroenteritis 0.00003121213
Endospores:No 1.331e-650211
Endospores:Yes 7.161e-7453
GC_Content_Range4:0-40 1.421e-1435213
GC_Content_Range4:40-60 4.495e-7108224
GC_Content_Range4:60-100 0.001678166145
GC_Content_Range7:0-30 8.003e-6447
GC_Content_Range7:30-40 1.080e-831166
GC_Content_Range7:50-60 1.334e-864107
GC_Content_Range7:60-70 0.001449862134
Genome_Size_Range5:0-2 9.331e-1321155
Genome_Size_Range5:2-4 0.001195455197
Genome_Size_Range5:4-6 4.808e-13105184
Genome_Size_Range5:6-10 0.00032282847
Genome_Size_Range9:0-1 0.0005515227
Genome_Size_Range9:1-2 2.722e-919128
Genome_Size_Range9:2-3 0.001636130120
Genome_Size_Range9:4-5 0.00001125396
Genome_Size_Range9:5-6 8.297e-75288
Genome_Size_Range9:6-8 0.00007652538
Gram_Stain:Gram_Neg 7.183e-39190333
Gram_Stain:Gram_Pos 4.279e-275150
Habitat:Multiple 0.001360879178
Habitat:Specialized 0.00261601053
Motility:No 5.145e-1221151
Motility:Yes 1.541e-12136267
Optimal_temp.:28-30 0.000712877
Optimal_temp.:35-37 1.263e-61313
Oxygen_Req:Anaerobic 9.566e-913102
Oxygen_Req:Facultative 2.923e-697201
Oxygen_Req:Microaerophilic 0.00024661418
Pathogenic_in:Animal 0.00107653566
Pathogenic_in:No 0.003188867226
Shape:Coccus 4.312e-8982
Shape:Rod 4.158e-7152347
Shape:Spiral 0.00008032334
Temp._range:Hyperthermophilic 0.0003909123
Temp._range:Mesophilic 0.0000890186473
Temp._range:Thermophilic 0.0076385635



Back to top


ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 373
Effective number of orgs (counting one per cluster within 468 clusters): 292

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM40
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
VEIS391735 ncbi Verminephrobacter eiseniae EF01-21
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTHE300852 ncbi Thermus thermophilus HB80
TTHE262724 ncbi Thermus thermophilus HB270
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB40
TSP28240 Thermotoga sp.0
TSP1755 Thermoanaerobacter sp.0
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332230
TPET390874 ncbi Thermotoga petrophila RKU-10
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TMAR243274 ncbi Thermotoga maritima MSB80
TLET416591 ncbi Thermotoga lettingae TMO0
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TERY203124 ncbi Trichodesmium erythraeum IMS1011
TELO197221 ncbi Thermosynechococcus elongatus BP-11
TDEN243275 ncbi Treponema denticola ATCC 354050
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen0
STOK273063 ncbi Sulfolobus tokodaii 70
STHE322159 ncbi Streptococcus thermophilus LMD-90
STHE299768 ncbi Streptococcus thermophilus CNRZ10660
STHE292459 ncbi Symbiobacterium thermophilum IAM 148630
STHE264199 ncbi Streptococcus thermophilus LMG 183110
SSUI391296 ncbi Streptococcus suis 98HAH330
SSUI391295 ncbi Streptococcus suis 05ZYH330
SSP84588 ncbi Synechococcus sp. WH 81020
SSP64471 ncbi Synechococcus sp. CC93110
SSP644076 Silicibacter sp. TrichCH4B1
SSP387093 ncbi Sulfurovum sp. NBC37-11
SSP292414 ncbi Ruegeria sp. TM10401
SSP1148 ncbi Synechocystis sp. PCC 68030
SSP1131 Synechococcus sp. CC96050
SSOL273057 ncbi Sulfolobus solfataricus P20
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153050
SRUB309807 ncbi Salinibacter ruber DSM 138550
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370552 ncbi Streptococcus pyogenes MGAS102700
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103940
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SPNE488221 ncbi Streptococcus pneumoniae 705850
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-60
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-140
SPNE171101 ncbi Streptococcus pneumoniae R60
SPNE170187 ncbi Streptococcus pneumoniae G540
SPNE1313 Streptococcus pneumoniae0
SMUT210007 ncbi Streptococcus mutans UA1590
SMEL266834 ncbi Sinorhizobium meliloti 10211
SMED366394 ncbi Sinorhizobium medicae WSM4191
SMAR399550 ncbi Staphylothermus marinus F10
SLAC55218 Ruegeria lacuscaerulensis1
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14350
SGOR29390 Streptococcus gordonii Challis0
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122280
SEPI176279 ncbi Staphylococcus epidermidis RP62A0
SELO269084 ncbi Synechococcus elongatus PCC 63010
SAVE227882 ncbi Streptomyces avermitilis MA-46800
SAUR93062 ncbi Staphylococcus aureus aureus COL0
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83250
SAUR426430 ncbi Staphylococcus aureus aureus Newman0
SAUR418127 ncbi Staphylococcus aureus aureus Mu30
SAUR367830 Staphylococcus aureus aureus USA3000
SAUR359787 ncbi Staphylococcus aureus aureus JH10
SAUR359786 ncbi Staphylococcus aureus aureus JH90
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4760
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2520
SAUR273036 ncbi Staphylococcus aureus RF1220
SAUR196620 ncbi Staphylococcus aureus aureus MW20
SAUR158879 ncbi Staphylococcus aureus aureus N3150
SAUR158878 ncbi Staphylococcus aureus aureus Mu500
SALA317655 ncbi Sphingopyxis alaskensis RB22560
SAGA211110 ncbi Streptococcus agalactiae NEM3160
SAGA208435 ncbi Streptococcus agalactiae 2603V/R0
SAGA205921 ncbi Streptococcus agalactiae A9090
SACI56780 ncbi Syntrophus aciditrophicus SB0
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RTYP257363 ncbi Rickettsia typhi Wilmington1
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170251
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170291
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.11
RSP357808 ncbi Roseiflexus sp. RS-10
RSP101510 ncbi Rhodococcus jostii RHA10
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332090
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111701
RRIC452659 ncbi Rickettsia rickettsii Iowa1
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith1
RPRO272947 ncbi Rickettsia prowazekii Madrid E1
RPOM246200 ncbi Ruegeria pomeroyi DSS-31
RMAS416276 ncbi Rickettsia massiliae MTU51
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38411
RFEL315456 ncbi Rickettsia felis URRWXCal21
RETL347834 ncbi Rhizobium etli CFN 421
RDEN375451 ncbi Roseobacter denitrificans OCh 1141
RCON272944 ncbi Rickettsia conorii Malish 71
RCAS383372 ncbi Roseiflexus castenholzii DSM 139410
RCAN293613 ncbi Rickettsia canadensis McKiel1
RBEL391896 ncbi Rickettsia bellii OSU 85-3891
RBEL336407 ncbi Rickettsia bellii RML369-C1
RALB246199 Ruminococcus albus 80
RAKA293614 ncbi Rickettsia akari Hartford1
PTOR263820 ncbi Picrophilus torridus DSM 97900
PTHE370438 ncbi Pelotomaculum thermopropionicum SI0
PSP56811 Psychrobacter sp.1
PSP117 Pirellula sp.1
PRUM264731 ncbi Prevotella ruminicola 231
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257450
PMOB403833 ncbi Petrotoga mobilis SJ950
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74547 ncbi Prochlorococcus marinus MIT 93130
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR59920 ncbi Prochlorococcus marinus NATL2A0
PMAR167555 ncbi Prochlorococcus marinus NATL1A0
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13750
PMAR146891 ncbi Prochlorococcus marinus AS96010
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 171
PHOR70601 ncbi Pyrococcus horikoshii OT30
PGIN242619 ncbi Porphyromonas gingivalis W831
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PCRY335284 ncbi Psychrobacter cryohalolentis K51
PATL342610 ncbi Pseudoalteromonas atlantica T6c1
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PARC259536 ncbi Psychrobacter arcticus 273-41
PAER178306 ncbi Pyrobaculum aerophilum IM20
PACN267747 ncbi Propionibacterium acnes KPA1712020
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
OIHE221109 ncbi Oceanobacillus iheyensis HTE8310
OANT439375 ncbi Ochrobactrum anthropi ATCC 491881
NSP35761 Nocardioides sp.0
NSP103690 ncbi Nostoc sp. PCC 71201
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
NEUT335283 ncbi Nitrosomonas eutropha C910
NEUR228410 ncbi Nitrosomonas europaea ATCC 197180
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124440
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-10
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra0
MTUB336982 ncbi Mycobacterium tuberculosis F110
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE264732 ncbi Moorella thermoacetica ATCC 390730
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MTBRV ncbi Mycobacterium tuberculosis H37Rv0
MTBCDC ncbi Mycobacterium tuberculosis CDC15510
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSP409 Methylobacterium sp.1
MSP266779 ncbi Chelativorans sp. BNC11
MSP189918 ncbi Mycobacterium sp. KMS0
MSP164757 ncbi Mycobacterium sp. JLS0
MSP164756 ncbi Mycobacterium sp. MCS0
MSME246196 ncbi Mycobacterium smegmatis MC2 1550
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK0
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MEXT419610 ncbi Methylobacterium extorquens PA11
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P20
MBOV233413 ncbi Mycobacterium bovis AF2122/970
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAER449447 ncbi Microcystis aeruginosa NIES-8430
MAEO419665 ncbi Methanococcus aeolicus Nankai-31
MACE188937 ncbi Methanosarcina acetivorans C2A0
MABS561007 ncbi Mycobacterium abscessus ATCC 199770
LXYL281090 ncbi Leifsonia xyli xyli CTCB070
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53340
LSPH444177 ncbi Lysinibacillus sphaericus C3-410
LSAK314315 ncbi Lactobacillus sakei sakei 23K0
LREU557436 ncbi Lactobacillus reuteri DSM 200160
LPLA220668 ncbi Lactobacillus plantarum WCFS10
LMON265669 ncbi Listeria monocytogenes 4b F23650
LMON169963 ncbi Listeria monocytogenes EGD-e0
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82930
LLAC272623 ncbi Lactococcus lactis lactis Il14030
LLAC272622 ncbi Lactococcus lactis cremoris SK110
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LINN272626 ncbi Listeria innocua Clip112620
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LCAS321967 ncbi Lactobacillus casei ATCC 3340
LBRE387344 ncbi Lactobacillus brevis ATCC 3670
LACI272621 ncbi Lactobacillus acidophilus NCFM0
KRAD266940 ncbi Kineococcus radiotolerans SRS302160
JSP375286 ncbi Janthinobacterium sp. Marseille1
JSP290400 ncbi Jannaschia sp. CCS11
ILOI283942 ncbi Idiomarina loihiensis L2TR1
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSAL478009 ncbi Halobacterium salinarum R10
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMOD498761 ncbi Heliobacterium modesticaldum Ice10
HMAR272569 ncbi Haloarcula marismortui ATCC 430490
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HARS204773 ncbi Herminiimonas arsenicoxydans1
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-20
GKAU235909 ncbi Geobacillus kaustophilus HTA4260
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-001
FTUL418136 ncbi Francisella tularensis tularensis WY96-34181
FTUL401614 ncbi Francisella novicida U1121
FTUL393115 ncbi Francisella tularensis tularensis FSC1981
FTUL393011 ncbi Francisella tularensis holarctica OSU181
FTUL351581 Francisella tularensis holarctica FSC2001
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S850
FSP1855 Frankia sp. EAN1pec0
FSP106370 ncbi Frankia sp. CcI30
FRANT ncbi Francisella tularensis tularensis SCHU S41
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250171
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B10
FMAG334413 ncbi Finegoldia magna ATCC 293280
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ELIT314225 ncbi Erythrobacter litoralis HTCC25940
EFAE226185 ncbi Enterococcus faecalis V5830
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DSP255470 ncbi Dehalococcoides sp. CBDB10
DSP216389 ncbi Dehalococcoides sp. BAV10
DSHI398580 ncbi Dinoroseobacter shibae DFL 121
DRED349161 ncbi Desulfotomaculum reducens MI-10
DRAD243230 ncbi Deinococcus radiodurans R10
DPSY177439 ncbi Desulfotalea psychrophila LSv541
DOLE96561 ncbi Desulfococcus oleovorans Hxd31
DHAF138119 ncbi Desulfitobacterium hafniense Y510
DGEO319795 ncbi Deinococcus geothermalis DSM 113000
DETH243164 ncbi Dehalococcoides ethenogenes 1950
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA1
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis1
CTRA471472 ncbi Chlamydia trachomatis 434/Bu1
CTET212717 ncbi Clostridium tetani E880
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CSP501479 Citreicella sp. SE451
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)1
CPSY167879 ncbi Colwellia psychrerythraea 34H1
CPNE182082 ncbi Chlamydophila pneumoniae TW-1831
CPNE138677 ncbi Chlamydophila pneumoniae J1381
CPNE115713 ncbi Chlamydophila pneumoniae CWL0291
CPNE115711 ncbi Chlamydophila pneumoniae AR391
CPHY357809 ncbi Clostridium phytofermentans ISDg0
CPER289380 ncbi Clostridium perfringens SM1010
CPER195103 ncbi Clostridium perfringens ATCC 131240
CPER195102 ncbi Clostridium perfringens 130
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10621
CNOV386415 ncbi Clostridium novyi NT0
CMUR243161 ncbi Chlamydia muridarum Nigg1
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CKLU431943 ncbi Clostridium kluyveri DSM 5550
CJEI306537 ncbi Corynebacterium jeikeium K4110
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29010
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3811
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130320
CFEL264202 ncbi Chlamydophila felis Fe/C-561
CEFF196164 ncbi Corynebacterium efficiens YS-3140
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131290
CDIF272563 ncbi Clostridium difficile 6300
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C0
CCAV227941 ncbi Chlamydophila caviae GPIC1
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto0
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6570
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B0
CBOT498213 ncbi Clostridium botulinum B1 str. Okra0
CBOT441772 ncbi Clostridium botulinum F str. Langeland0
CBOT441771 ncbi Clostridium botulinum A str. Hall0
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193970
CBOT36826 Clostridium botulinum A0
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80520
CACE272562 ncbi Clostridium acetobutylicum ATCC 8240
CABO218497 ncbi Chlamydophila abortus S26/31
BXEN266265 ncbi Burkholderia xenovorans LB4001
BWEI315730 ncbi Bacillus weihenstephanensis KBAB40
BTUR314724 ncbi Borrelia turicatae 91E1350
BTRI382640 ncbi Bartonella tribocorum CIP 1054761
BTHU412694 ncbi Bacillus thuringiensis Al Hakam0
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-270
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54821
BSUI470137 ncbi Brucella suis ATCC 234451
BSUI204722 ncbi Brucella suis 13301
BSUB ncbi Bacillus subtilis subtilis 1680
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)0
BQUI283165 ncbi Bartonella quintana Toulouse1
BPUM315750 ncbi Bacillus pumilus SAFR-0320
BOVI236 Brucella ovis1
BMEL359391 ncbi Brucella melitensis biovar Abortus 23081
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M1
BLON206672 ncbi Bifidobacterium longum NCC27050
BLIC279010 ncbi Bacillus licheniformis ATCC 145800
BHER314723 ncbi Borrelia hermsii DAH0
BHEN283166 ncbi Bartonella henselae Houston-11
BHAL272558 ncbi Bacillus halodurans C-1250
BGAR290434 ncbi Borrelia garinii PBi0
BFRA295405 ncbi Bacteroides fragilis YCH461
BFRA272559 ncbi Bacteroides fragilis NCTC 93431
BCLA66692 ncbi Bacillus clausii KSM-K160
BCIC186490 Candidatus Baumannia cicadellinicola0
BCER572264 ncbi Bacillus cereus 03BB1020
BCER405917 Bacillus cereus W0
BCER315749 ncbi Bacillus cytotoxicus NVH 391-980
BCER288681 ncbi Bacillus cereus E33L0
BCER226900 ncbi Bacillus cereus ATCC 145790
BCAN483179 ncbi Brucella canis ATCC 233651
BBUR224326 ncbi Borrelia burgdorferi B310
BBAC360095 ncbi Bartonella bacilliformis KC5831
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)0
BANT592021 ncbi Bacillus anthracis A02480
BANT568206 ncbi Bacillus anthracis CDC 6840
BANT261594 ncbi Bacillus anthracis Ames Ancestor0
BANT260799 ncbi Bacillus anthracis Sterne0
BAMY326423 ncbi Bacillus amyloliquefaciens FZB420
BAFZ390236 ncbi Borrelia afzelii PKo0
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9411
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AVAR240292 ncbi Anabaena variabilis ATCC 294131
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP62977 ncbi Acinetobacter sp. ADP11
ASP232721 ncbi Acidovorax sp. JS421
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K10
AORE350688 ncbi Alkaliphilus oremlandii OhILAs0
ANAE240017 Actinomyces oris MG10
AMET293826 ncbi Alkaliphilus metalliredigens QYMF0
AMAR329726 ncbi Acaryochloris marina MBIC110170
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
ACEL351607 ncbi Acidothermus cellulolyticus 11B0
AAVE397945 ncbi Acidovorax citrulli AAC00-11


Names of the homologs of the genes in the group in each of these orgs
  EG12210   EG11341   EG11189   EG10520   
ZMOB264203
WPIP955
WPIP80849
VEIS391735 VEIS_2558
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496
TWHI203267
TVOL273116
TTHE300852
TTHE262724
TTEN273068
TSP28240
TSP1755
TPSE340099
TPET390874
TPEN368408
TPAL243276
TMAR243274
TLET416591
TKOD69014
TERY203124 TERY_0610
TELO197221 TLR2133
TDEN243275
TACI273075
SWOL335541
STOK273063
STHE322159
STHE299768
STHE292459
STHE264199
SSUI391296
SSUI391295
SSP84588
SSP64471
SSP644076 SCH4B_4045
SSP387093 SUN_0362
SSP292414 TM1040_0723
SSP1148
SSP1131
SSOL273057
SSAP342451
SRUB309807
SPYO370554
SPYO370553
SPYO370552
SPYO370551
SPYO319701
SPYO293653
SPYO286636
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SPNE488221
SPNE487214
SPNE487213
SPNE171101
SPNE170187
SPNE1313
SMUT210007
SMEL266834 SMC00894
SMED366394 SMED_0424
SMAR399550
SLAC55218 SL1157_3366
SHAE279808
SGOR29390
SEPI176280
SEPI176279
SELO269084
SAVE227882
SAUR93062
SAUR93061
SAUR426430
SAUR418127
SAUR367830
SAUR359787
SAUR359786
SAUR282459
SAUR282458
SAUR273036
SAUR196620
SAUR158879
SAUR158878
SALA317655
SAGA211110
SAGA208435
SAGA205921
SACI56780
SACI330779
RTYP257363 RT0048
RSPH349102 RSPH17025_1376
RSPH349101 RSPH17029_1057
RSPH272943 RSP_2394
RSP357808
RSP101510
RSAL288705
RRUB269796 RRU_A0581
RRIC452659 RRIOWA_0151
RRIC392021 A1G_00700
RPRO272947 RP089
RPOM246200 SPO_2800
RMAS416276 RMA_0125
RLEG216596 RL0902
RFEL315456 RF_0072
RETL347834 RHE_CH00844
RDEN375451 RD1_3308
RCON272944 RC0118
RCAS383372
RCAN293613 A1E_00425
RBEL391896 A1I_00870
RBEL336407 RBE_1335
RALB246199
RAKA293614 A1C_00640
PTOR263820
PTHE370438
PSP56811 PSYCPRWF_0866
PSP117 RB11688
PRUM264731 GFRORF2166
PPEN278197
PMOB403833
PMAR93060
PMAR74547
PMAR74546
PMAR59920
PMAR167555
PMAR167546
PMAR167542
PMAR167540
PMAR167539
PMAR146891
PISL384616
PINT246198 PIN_A0971
PHOR70601
PGIN242619 PG_1565
PFUR186497
PCRY335284 PCRYO_1730
PATL342610 PATL_0057
PAST100379
PARS340102
PARC259536 PSYC_1549
PAER178306
PACN267747
PABY272844
OTSU357244
OIHE221109
OANT439375 OANT_3046
NSP35761
NSP103690 ALR5168
NSEN222891
NPHA348780
NEUT335283
NEUR228410
NARO279238
MVAN350058
MTUB419947
MTUB336982
MTHE349307
MTHE264732
MTHE187420
MTBRV
MTBCDC
MSYN262723
MSTA339860
MSP409 M446_6828
MSP266779 MESO_0438
MSP189918
MSP164757
MSP164756
MSME246196
MSED399549
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR368407
MMAR267377
MLEP272631
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGIL350054
MGEN243273
MFLO265311
MEXT419610 MEXT_2970
MCAP340047
MBUR259564
MBOV410289
MBOV233413
MBAR269797
MART243272
MAER449447
MAEO419665 MAEO_0393
MACE188937
MABS561007
LXYL281090
LWEL386043
LSPH444177
LSAK314315
LREU557436
LPLA220668
LMON265669
LMON169963
LMES203120
LLAC272623
LLAC272622
LJOH257314
LINN272626
LHEL405566
LGAS324831
LDEL390333
LDEL321956
LCAS321967
LBRE387344
LACI272621
KRAD266940
JSP375286 MMA_2942
JSP290400 JANN_0400
ILOI283942 IL1987
IHOS453591
HWAL362976
HSP64091
HSAL478009
HMUK485914
HMOD498761
HMAR272569
HBUT415426
HARS204773 HEAR2720
GTHE420246
GKAU235909
FTUL458234 FTA_0580
FTUL418136 FTW_0366
FTUL401614 FTN_1469
FTUL393115 FTF1561
FTUL393011 FTH_0549
FTUL351581 FTL_0547
FSUC59374
FSP1855
FSP106370
FRANT KDTA
FPHI484022 FPHI_1206
FNOD381764
FMAG334413
ERUM302409
ERUM254945
ELIT314225
EFAE226185
ECHA205920
ECAN269484
DSP255470
DSP216389
DSHI398580 DSHI_0032
DRED349161
DRAD243230
DPSY177439 DP1705
DOLE96561 DOLE_1433
DHAF138119
DGEO319795
DETH243164
CVES412965 COSY_0380
CTRA471473 CTLON_0455
CTRA471472 CTL0460
CTET212717
CSUL444179
CSP501479 CSE45_0999
CRUT413404 RMAG_0411
CPSY167879 CPS_0118
CPNE182082 CPB0155
CPNE138677 CPJ0154
CPNE115713 CPN0154
CPNE115711 CP_0617
CPHY357809
CPER289380
CPER195103
CPER195102
CPEL335992 SAR11_0148
CNOV386415
CMUR243161 TC_0480
CMET456442
CMAQ397948
CKOR374847
CKLU431943
CJEI306537
CHYD246194
CHOM360107 CHAB381_0705
CGLU196627
CFEL264202 CF0392
CEFF196164
CDIP257309
CDIF272563
CDES477974
CCAV227941 CCA_00611
CBOT536232
CBOT515621
CBOT508765
CBOT498213
CBOT441772
CBOT441771
CBOT441770
CBOT36826
CBEI290402
CACE272562
CABO218497 CAB584
BXEN266265 BXE_B0560
BWEI315730
BTUR314724
BTRI382640 BT_0295
BTHU412694
BTHU281309
BTHE226186 BT_2747
BSUI470137 BSUIS_B0219
BSUI204722 BR_A0215
BSUB
BSP107806
BQUI283165 BQ02540
BPUM315750
BOVI236 GBOORFA0212
BMEL359391 BAB2_0209
BMEL224914 BMEII1029
BLON206672
BLIC279010
BHER314723
BHEN283166 BH02660
BHAL272558
BGAR290434
BFRA295405 BF4205
BFRA272559 BF4029
BCLA66692
BCIC186490
BCER572264
BCER405917
BCER315749
BCER288681
BCER226900
BCAN483179 BCAN_B0216
BBUR224326
BBAC360095 BARBAKC583_1204
BAPH372461
BAPH198804
BANT592021
BANT568206
BANT261594
BANT260799
BAMY326423
BAFZ390236
BABO262698 BRUAB2_0211
AYEL322098
AVAR240292 AVA_2415
AURANTIMONAS
ASP62977 ACIAD3479
ASP232721 AJS_2022
APHA212042
APER272557
AORE350688
ANAE240017
AMET293826
AMAR329726
AMAR234826
ALAI441768
AFUL224325
ACEL351607
AAVE397945 AAVE_2820


Organism features enriched in list (features available for 344 out of the 373 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 1.485e-67492
Arrangment:Clusters 0.00133621617
Arrangment:Singles 0.0000813147286
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 0.00282391111
Disease:Wide_range_of_infections 0.00282391111
Disease:gastroenteritis 0.0001494113
Endospores:No 3.145e-8155211
Endospores:Yes 0.00001744553
GC_Content_Range4:0-40 5.433e-19175213
GC_Content_Range4:40-60 0.0000231109224
GC_Content_Range4:60-100 1.447e-759145
GC_Content_Range7:0-30 2.999e-74347
GC_Content_Range7:30-40 4.303e-11132166
GC_Content_Range7:50-60 3.584e-838107
GC_Content_Range7:60-70 2.209e-656134
Genome_Size_Range5:0-2 9.291e-17133155
Genome_Size_Range5:2-4 0.0053554129197
Genome_Size_Range5:4-6 4.089e-1467184
Genome_Size_Range5:6-10 0.00006251547
Genome_Size_Range9:0-1 0.00008292527
Genome_Size_Range9:1-2 3.837e-12108128
Genome_Size_Range9:2-3 0.003200683120
Genome_Size_Range9:4-5 0.00001373896
Genome_Size_Range9:5-6 5.834e-82988
Genome_Size_Range9:6-8 0.00008061138
Gram_Stain:Gram_Neg 7.372e-39123333
Gram_Stain:Gram_Pos 1.299e-23137150
Habitat:Multiple 0.001719590178
Habitat:Specialized 0.00175334153
Motility:No 1.726e-10121151
Motility:Yes 1.181e-11118267
Optimal_temp.:25-30 0.0027904519
Optimal_temp.:30-37 0.00006231818
Oxygen_Req:Aerobic 0.002769695185
Oxygen_Req:Anaerobic 6.655e-985102
Oxygen_Req:Facultative 0.0005653101201
Oxygen_Req:Microaerophilic 0.0002147318
Pathogenic_in:Animal 0.00655043066
Pathogenic_in:No 0.0063163146226
Pathogenic_in:Plant 0.0018906315
Shape:Coccus 9.992e-107282
Shape:Irregular_coccus 0.00010791717
Shape:Rod 9.001e-10170347
Shape:Sphere 0.00328101719
Shape:Spiral 0.0000619934
Temp._range:Hyperthermophilic 0.00006722223
Temp._range:Mesophilic 0.0000130260473



Back to top


ORGANISMS ENRICHED FOR GROUP:




Back to top


ORGANISMS DEPLETED FOR GROUP:




Back to top


PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181860.7808
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)1761610.7490
PWY-1269 (CMP-KDO biosynthesis I)3252050.6233
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3001920.5939
NAGLIPASYN-PWY (lipid IVA biosynthesis)3482060.5797
GLYCOCAT-PWY (glycogen degradation I)2461680.5707
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2911850.5686
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2961860.5631
ECASYN-PWY (enterobacterial common antigen biosynthesis)1911430.5616
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2901820.5508
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251550.5406
AST-PWY (arginine degradation II (AST pathway))1201040.5336
PWY-5913 (TCA cycle variation IV)3011820.5240
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951340.4829
REDCITCYC (TCA cycle variation II)1741220.4636
LPSSYN-PWY (superpathway of lipopolysaccharide biosynthesis)91790.4531
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2861660.4524
PYRIDOXSYN-PWY (pyridoxal 5'-phosphate biosynthesis I)4222090.4523
UBISYN-PWY (ubiquinol-8 biosynthesis (prokaryotic))3982020.4494
PWY-5918 (heme biosynthesis I)2721600.4467
DAPLYSINESYN-PWY (lysine biosynthesis I)3421840.4434
PWY-4041 (γ-glutamyl cycle)2791620.4427
PWY-5669 (phosphatidylethanolamine biosynthesis I)4162060.4423
PWY0-901 (selenocysteine biosynthesis I (bacteria))2301430.4421
GDPRHAMSYN-PWY (GDP-D-rhamnose biosynthesis)1561090.4275
LIPASYN-PWY (phospholipases)2121330.4235
PWY-5856 (ubiquinone-9 biosynthesis (prokaryotic))2551500.4224
GLUTDEG-PWY (glutamate degradation II)1941250.4205
PWY0-845 (superpathway of pyridoxal 5'-phosphate biosynthesis and salvage)3291760.4184
TYRFUMCAT-PWY (tyrosine degradation I)1841200.4155
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)1491040.4138
KDOSYN-PWY (KDO transfer to lipid IVA I)1801170.4062
GALACTITOLCAT-PWY (galactitol degradation)73640.4057
KDO-NAGLIPASYN-PWY (superpathway of KDO2-lipid A biosynthesis)1791160.4020
SULFATE-CYS-PWY (superpathway of sulfate assimilation and cysteine biosynthesis)3651850.4002



Back to top


PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG11341   EG11189   EG10520   
EG122100.9996460.9997270.998903
EG113410.9997370.999123
EG111890.999489
EG10520



Back to top


PAIRWISE BLAST SCORES:

  EG12210   EG11341   EG11189   EG10520   
EG122100.0f01.6e-72.7e-7-
EG113411.2e-70.0f0--
EG111891.2e-6-0.0f0-
EG10520---0.0f0



Back to top


PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- LIPA-CORESYN-PWY (Lipid A-core biosynthesis) (degree of match pw to cand: 0.300, degree of match cand to pw: 0.750, average score: 0.947)
  Genes in pathway or complex:
   *in cand* 0.9997 0.9995 EG11189 (waaC) EG11189-MONOMER (ADP-heptose:LPS heptosyl transferase I)
   *in cand* 0.9996 0.9989 EG12210 (waaF) EG12210-MONOMER (ADP-heptose:LPS heptosyltransferase II)
             0.9988 0.9977 EG11339 (waaG) EG11339-MONOMER (lipopolysaccharide glucosyltransferase I)
             0.9986 0.9980 EG11340 (waaP) EG11340-MONOMER (lipopolysaccharide core heptose (I) kinase)
   *in cand* 0.9996 0.9991 EG11341 (waaQ) EG11341-MONOMER (lipopolysaccharide core heptosyl transferase III)
             0.9958 0.9955 EG11425 (waaY) EG11425-MONOMER (lipopolysaccharide core heptose (II) kinase)
             0.9151 0.6981 EG11351 (waaB) EG11351-MONOMER (UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase)
             0.9942 0.9914 EG11352 (waaI) EG11352-MONOMER (UDP-D-glucose:(glucosyl)LPS α-1,3-glucosyltransferase)
             0.9950 0.9924 EG11353 (waaJ) EG11353-MONOMER (UDP-glucose:(glucosyl)LPS α-1,2-glucosyltransferase)
             0.8774 0.7634 EG11423 (waaK) EG11423-MONOMER (lipopolysaccharide core biosynthesis; heptosyl transferase IV; probably hexose transferase)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9994 0.9989 EG10520 (waaA) KDOTRANS-MONOMER (KDO transferase)

- LPSSYN-PWY (superpathway of lipopolysaccharide biosynthesis) (degree of match pw to cand: 0.160, degree of match cand to pw: 1.000, average score: 0.607)
  Genes in pathway or complex:
             0.5307 0.2768 EG10545 (lpxA) UDPNACETYLGLUCOSAMACYLTRANS-MONOMER (LpxA)
             0.9038 0.8219 EG10265 (lpxC) UDPACYLGLCNACDEACETYL-MONOMER (UDP-3-O-acyl-N-acetylglucosamine deacetylase)
             0.5198 0.1931 EG10316 (lpxD) UDPHYDROXYMYRGLUCOSAMNACETYLTRANS-MONO (UDP-3-O-[3-hydroxymyristoyl]glucosamine N-acetyltransferase)
             0.0445 0.0031 EG12666 (lpxH) EG12666-MONOMER (UDP-2,3-diacylglucosamine hydrolase)
             0.7900 0.5525 EG11409 (lpxK) TETRAACYLDISACC4KIN-MONOMER (tetraacyldisaccharide 4'-kinase)
             0.5702 0.4263 EG10546 (lpxB) LIPIDADISACCHARIDESYNTH-MONOMER (LpxB)
             0.6021 0.4008 EG10973 (gutQ) EG10973-MONOMER (D-arabinose 5-phosphate isomerase)
             0.7413 0.5875 G7662 (kdsD) G7662-MONOMER (D-arabinose 5-phosphate isomerase)
             0.4016 0.0414 EG10518 (kdsA) KDO-8PSYNTH-MONOMER (3-deoxy-D-manno-octulosonate 8-phosphate synthase)
             0.7198 0.6339 G7663 (kdsC) G7663-MONOMER (3-deoxy-D-manno-octulosonate 8-phosphate phosphatase monomer)
             0.1177 0.0033 EG10519 (kdsB) CPM-KDOSYNTH-MONOMER (3-deoxy-D-manno-octulosonate cytidylyltransferase)
   *in cand* 0.9994 0.9989 EG10520 (waaA) KDOTRANS-MONOMER (KDO transferase)
             0.9758 0.9641 EG10614 (lpxM) MYRISTOYLACYLTRAN-MONOMER (myristoyl-acyl carrier protein (ACP)-dependent acyltransferase)
             0.9653 0.9317 EG10464 (lpxL) LAUROYLACYLTRAN-MONOMER (lauroyl acyltransferase)
             0.8774 0.7634 EG11423 (waaK) EG11423-MONOMER (lipopolysaccharide core biosynthesis; heptosyl transferase IV; probably hexose transferase)
             0.9950 0.9924 EG11353 (waaJ) EG11353-MONOMER (UDP-glucose:(glucosyl)LPS α-1,2-glucosyltransferase)
             0.9942 0.9914 EG11352 (waaI) EG11352-MONOMER (UDP-D-glucose:(glucosyl)LPS α-1,3-glucosyltransferase)
             0.9151 0.6981 EG11351 (waaB) EG11351-MONOMER (UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase)
             0.9958 0.9955 EG11425 (waaY) EG11425-MONOMER (lipopolysaccharide core heptose (II) kinase)
   *in cand* 0.9996 0.9991 EG11341 (waaQ) EG11341-MONOMER (lipopolysaccharide core heptosyl transferase III)
             0.9986 0.9980 EG11340 (waaP) EG11340-MONOMER (lipopolysaccharide core heptose (I) kinase)
             0.9988 0.9977 EG11339 (waaG) EG11339-MONOMER (lipopolysaccharide glucosyltransferase I)
   *in cand* 0.9996 0.9989 EG12210 (waaF) EG12210-MONOMER (ADP-heptose:LPS heptosyltransferase II)
   *in cand* 0.9997 0.9995 EG11189 (waaC) EG11189-MONOMER (ADP-heptose:LPS heptosyl transferase I)
             0.0882 0.0039 EG50003 (acpP) TRANS-DELTA3-CIS-DELTA5-DODECENOYL-ACP (trans-Δ3-cis-Δ5-dodecenoyl-ACP)
  All candidate genes found in this pathway



Back to top


GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10520 EG11341 (centered at EG10520)
EG11189 EG12210 (centered at EG11189)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  EG12210   EG11341   EG11189   EG10520   
220/623207/623217/623315/623
AAEO224324:0:Tyes000126
AAUR290340:2:Tyes0-2-
AAVE397945:0:Tyes---0
ABAC204669:0:Tyes3330
ABAU360910:0:Tyes2109-01
ABOR393595:0:Tyes86084287
ABUT367737:0:Tyes0022176
ACAU438753:0:Tyes0-1133
ACRY349163:8:Tyes0--385
ADEH290397:0:Tyes095701
AEHR187272:0:Tyes1551691690
AFER243159:0:Tyes96-20
AHYD196024:0:Tyes11800119
APLE416269:0:Tyes123501234944
APLE434271:0:Tno123301232933
ASAL382245:5:Tyes4033004032
ASP1667:3:Tyes8-0-
ASP232721:2:Tyes---0
ASP62928:0:Tyes276398427640
ASP62977:0:Tyes---0
ASP76114:2:Tyes1387309213860
AVAR240292:3:Tyes-0--
BABO262698:0:Tno---0
BAMB339670:3:Tno1958162402
BAMB398577:3:Tno1796147102
BBAC264462:0:Tyes8120812813
BBAC360095:0:Tyes---0
BBRO257310:0:Tyes3259-01
BCAN483179:0:Tno---0
BCEN331271:2:Tno1631130702
BCEN331272:3:Tyes1736141502
BFRA272559:1:Tyes---0
BFRA295405:0:Tno---0
BHEN283166:0:Tyes---0
BJAP224911:0:Fyes0--1592
BMAL243160:1:Tno0142016731671
BMAL320388:1:Tno0454131133
BMAL320389:1:Tyes029719821980
BMEL224914:0:Tno---0
BMEL359391:0:Tno---0
BOVI236:0:Tyes---0
BPAR257311:0:Tno1487-01
BPER257313:0:Tyes1995-01
BPET94624:0:Tyes0324622461
BPSE272560:1:Tyes033218891887
BPSE320372:1:Tno038922412239
BPSE320373:1:Tno036521632161
BQUI283165:0:Tyes---0
BSP36773:2:Tyes2006169202
BSP376:0:Tyes0--858
BSUI204722:0:Tyes---0
BSUI470137:0:Tno---0
BTHA271848:1:Tno0331823825
BTHE226186:0:Tyes---0
BTRI382640:1:Tyes---0
BVIE269482:7:Tyes1900156002
BXEN266265:1:Tyes0---
CABO218497:0:Tyes---0
CAULO:0:Tyes8484-0
CBLO203907:0:Tyes0-12
CBLO291272:0:Tno0-12
CBUR227377:1:Tyes1533186818680
CBUR360115:1:Tno16690052
CBUR434922:2:Tno0168816881628
CCAV227941:1:Tyes---0
CCHL340177:0:Tyes0--1027
CCON360104:2:Tyes3503443410
CCUR360105:0:Tyes069924
CFEL264202:1:Tyes---0
CFET360106:0:Tyes3563483450
CHOM360107:1:Tyes---0
CHUT269798:0:Tyes-001025
CJAP155077:0:Tyes0-8342352
CJEJ192222:0:Tyes4314174170
CJEJ195099:0:Tno460-4520
CJEJ354242:2:Tyes418-4050
CJEJ360109:0:Tyes0-7673
CJEJ407148:0:Tno434-4150
CMIC31964:2:Tyes0-0-
CMIC443906:2:Tyes0-0-
CMUR243161:1:Tyes---0
CPEL335992:0:Tyes---0
CPNE115711:1:Tyes---0
CPNE115713:0:Tno---0
CPNE138677:0:Tno---0
CPNE182082:0:Tno---0
CPRO264201:0:Fyes00707830
CPSY167879:0:Tyes---0
CRUT413404:0:Tyes---0
CSAL290398:0:Tyes0779
CSP501479:8:Fyes---0
CSP78:2:Tyes0003380
CTEP194439:0:Tyes15201520-0
CTRA471472:0:Tyes---0
CTRA471473:0:Tno---0
CVES412965:0:Tyes---0
CVIO243365:0:Tyes192360910
DARO159087:0:Tyes3175038083807
DDES207559:0:Tyes1131113112790
DNOD246195:0:Tyes00139388
DOLE96561:0:Tyes---0
DPSY177439:2:Tyes---0
DSHI398580:5:Tyes---0
DVUL882:1:Tyes-660-0
ECAR218491:0:Tyes139120
ECOL199310:0:Tno010111
ECOL316407:0:Tno131120
ECOL331111:6:Tno010111
ECOL362663:0:Tno010111
ECOL364106:1:Tno010111
ECOL405955:2:Tyes010111
ECOL409438:6:Tyes09110
ECOL413997:0:Tno011112
ECOL439855:4:Tno010111
ECOL469008:0:Tno121110
ECOL481805:0:Tno111100
ECOL585034:0:Tno010111
ECOL585035:0:Tno010111
ECOL585055:0:Tno09110
ECOL585056:2:Tno09110
ECOL585057:0:Tno010111
ECOL585397:0:Tno09110
ECOL83334:0:Tno09110
ECOLI:0:Tno012113
ECOO157:0:Tno09110
EFER585054:1:Tyes012113
ESP42895:1:Tyes9780
FALN326424:0:Tyes000-
FJOH376686:0:Tyes-811-0
FNUC190304:0:Tyes1069106910690
FPHI484022:1:Tyes---0
FRANT:0:Tno---0
FTUL351581:0:Tno---0
FTUL393011:0:Tno---0
FTUL393115:0:Tyes---0
FTUL401614:0:Tyes---0
FTUL418136:0:Tno---0
FTUL458234:0:Tno---0
GBET391165:0:Tyes0--1917
GFOR411154:0:Tyes-3005-0
GMET269799:1:Tyes1414017
GOXY290633:5:Tyes01132-1155
GSUL243231:0:Tyes1410017
GURA351605:0:Tyes121015
GVIO251221:0:Tyes00--
HACI382638:1:Tyes93700440
HARS204773:0:Tyes---0
HAUR316274:2:Tyes000-
HCHE349521:0:Tyes0914775
HDUC233412:0:Tyes175009
HHAL349124:0:Tyes-0-56
HHEP235279:0:Tyes1186-3570
HINF281310:0:Tyes8200820380
HINF374930:0:Tyes000433
HINF71421:0:Tno8250-382
HNEP81032:0:Tyes0--274
HPY:0:Tno92200684
HPYL357544:1:Tyes87000671
HPYL85963:0:Tno84400620
HSOM205914:1:Tyes2222210
HSOM228400:0:Tno00123
ILOI283942:0:Tyes---0
JSP290400:1:Tyes---0
JSP375286:0:Tyes---0
KPNE272620:2:Tyes06110
LBIF355278:2:Tyes7597590-
LBIF456481:2:Tno7827820-
LBOR355276:1:Tyes5125120553
LBOR355277:1:Tno41417610
LCHO395495:0:Tyes8801493
LINT189518:1:Tyes122212227030
LINT267671:1:Tno000946
LINT363253:3:Tyes6030-586
LPNE272624:0:Tno3533533530
LPNE297245:1:Fno3563563560
LPNE297246:1:Fyes4574574570
LPNE400673:0:Tno-001335
MAEO419665:0:Tyes-0--
MAQU351348:2:Tyes40016
MAVI243243:0:Tyes000-
MCAP243233:0:Tyes6496496490
MEXT419610:0:Tyes---0
MFLA265072:0:Tyes15001780
MLOT266835:2:Tyes0014556
MMAG342108:0:Tyes0--3564
MMAR394221:0:Tyes-180-0
MPET420662:1:Tyes14096246240
MSP266779:3:Tyes---0
MSP400668:0:Tyes1814001809
MSP409:2:Tyes---0
MSUC221988:0:Tyes313103120
MXAN246197:0:Tyes-007
NFAR247156:2:Tyes00--
NGON242231:0:Tyes0-875856
NHAM323097:2:Tyes3301826
NMEN122586:0:Tno1451-20580
NMEN122587:0:Tyes1390-019
NMEN272831:0:Tno0-596614
NMEN374833:0:Tno1395-20700
NMUL323848:3:Tyes800-
NOCE323261:1:Tyes016162022
NSP103690:6:Tyes-0--
NSP387092:0:Tyes--062
NWIN323098:0:Tyes3-01508
OANT439375:4:Tyes---0
OCAR504832:0:Tyes355301918
PAER208963:0:Tyes24-230
PAER208964:0:Tno24-230
PARC259536:0:Tyes---0
PATL342610:0:Tyes---0
PCAR338963:0:Tyes3340
PCRY335284:1:Tyes---0
PDIS435591:0:Tyes-531-0
PENT384676:0:Tyes1531521520
PFLU205922:0:Tyes00125
PFLU216595:1:Tyes00126
PFLU220664:0:Tyes00125
PGIN242619:0:Tyes---0
PHAL326442:1:Tyes-007
PING357804:0:Tyes5003
PINT246198:1:Tyes---0
PLUM243265:0:Fyes0516
PLUT319225:0:Tyes11811185-0
PMEN399739:0:Tyes00130
PMUL272843:1:Tyes54205413
PNAP365044:8:Tyes0-972973
PPRO298386:2:Tyes-002
PPUT160488:0:Tno0014572
PPUT351746:0:Tyes0014471
PPUT76869:0:Tno0014666
PRUM264731:0:Tyes---0
PSP117:0:Tyes---0
PSP296591:2:Tyes0-14241425
PSP312153:0:Tyes158335001556
PSP56811:2:Tyes---0
PSTU379731:0:Tyes3131300
PSYR205918:0:Tyes00122
PSYR223283:2:Tyes2525240
RAKA293614:0:Fyes---0
RBEL336407:0:Tyes---0
RBEL391896:0:Fno---0
RCAN293613:0:Fyes---0
RCON272944:0:Tno---0
RDEN375451:4:Tyes---0
RETL347834:5:Tyes---0
REUT264198:2:Tyes-0--
REUT264198:3:Tyes0-199200
REUT381666:2:Tyes0-22522251
RFEL315456:2:Tyes---0
RFER338969:1:Tyes0-24902489
RLEG216596:6:Tyes---0
RMAS416276:1:Tyes---0
RMET266264:2:Tyes0-22112210
RPAL258594:0:Tyes2843-28460
RPAL316055:0:Tyes5655635630
RPAL316056:0:Tyes2-03285
RPAL316057:0:Tyes3-02521
RPAL316058:0:Tyes3-0255
RPOM246200:1:Tyes---0
RPRO272947:0:Tyes---0
RRIC392021:0:Fno---0
RRIC452659:0:Tyes---0
RRUB269796:1:Tyes---0
RSOL267608:1:Tyes0-127128
RSPH272943:4:Tyes---0
RSPH349101:2:Tno---0
RSPH349102:5:Tyes---0
RTYP257363:0:Tno---0
RXYL266117:0:Tyes050-
SARE391037:0:Tyes0-2529-
SBAL399599:3:Tyes-002
SBAL402882:1:Tno-002
SBOY300268:1:Tyes09110
SCO:2:Fyes-05-
SDEG203122:0:Tyes-7207200
SDEN318161:0:Tyes0002
SDYS300267:1:Tyes010111
SENT209261:0:Tno141130
SENT220341:0:Tno141130
SENT295319:0:Tno012113
SENT321314:2:Tno012113
SENT454169:2:Tno012114
SERY405948:0:Tyes000-
SFLE198214:0:Tyes09112
SFLE373384:0:Tno123110
SFUM335543:0:Tyes7053352
SGLO343509:3:Tyes0719
SHAL458817:0:Tyes0196019601962
SHIGELLA:0:Tno123110
SLAC55218:1:Fyes---0
SLOI323850:0:Tyes-005
SMED366394:3:Tyes---0
SMEL266834:2:Tyes---0
SONE211586:1:Tyes-220
SPEA398579:0:Tno-220
SPRO399741:1:Tyes06110
SSED425104:0:Tyes-550
SSON300269:1:Tyes111100
SSP292414:2:Tyes---0
SSP321327:0:Tyes-12200-
SSP321332:0:Tyes16041200-
SSP387093:0:Tyes---0
SSP644076:5:Fyes---0
SSP94122:1:Tyes0002
STRO369723:0:Tyes0-2200-
STYP99287:1:Tyes012113
TCRU317025:0:Tyes1039-10390
TDEN292415:0:Tyes1147001982
TDEN326298:0:Tyes1361431430
TELO197221:0:Tyes-0--
TERY203124:0:Tyes-0--
TFUS269800:0:Tyes000-
TROS309801:1:Tyes101-
TTUR377629:0:Tyes-002928
VCHO:0:Tyes11008
VCHO345073:1:Tno10007
VEIS391735:1:Tyes---0
VFIS312309:2:Tyes4003
VPAR223926:1:Tyes180-17
VVUL196600:2:Tyes300029
VVUL216895:1:Tno018181
WSUC273121:0:Tyes0406409605
XAUT78245:1:Tyes2296-22970
XAXO190486:0:Tyes-0-2370
XCAM190485:0:Tyes-0-2345
XCAM314565:0:Tno-2425-0
XCAM316273:0:Tno-0-2444
XCAM487884:0:Tno-2531-0
XFAS160492:2:Tno-2069-0
XFAS183190:1:Tyes-1112-0
XFAS405440:0:Tno-1191-0
XORY291331:0:Tno139139-0
XORY342109:0:Tyes-115-0
XORY360094:0:Tno00-341
YENT393305:1:Tyes246510
YPES187410:5:Tno0371712
YPES214092:3:Tno234310
YPES349746:2:Tno275210
YPES360102:3:Tyes039412
YPES377628:2:Tno3567035683569
YPES386656:2:Tno6490650651
YPSE273123:2:Tno252810
YPSE349747:2:Tno2340910



Back to top