CANDIDATE ID: 987

CANDIDATE ID: 987

NUMBER OF GENES: 4
AVERAGE SCORE:    9.9905400e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    5.0000000e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7414 (hycI) (b2717)
   Products of gene:
     - G7414-MONOMER (hydrogenase 3 maturation protease)
       Reactions:
        EC# 3.4.-.-

- EG11802 (hybD) (b2993)
   Products of gene:
     - EG11802-MONOMER (predicted maturation peptidase for hydrogenase 2)

- EG10485 (hypC) (b2728)
   Products of gene:
     - EG10485-MONOMER (protein involved in hydrogenase 3 maturation)

- EG10471 (hyaD) (b0975)
   Products of gene:
     - EG10471-MONOMER (protein involved in processing of HyaA and HyaB proteins)



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ORGANISMS CONTAINING AT LEAST 3 GENES FROM THE GROUP:

Total number of orgs: 138
Effective number of orgs (counting one per cluster within 468 clusters): 106

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80814
XAUT78245 ncbi Xanthobacter autotrophicus Py23
WSUC273121 ncbi Wolinella succinogenes DSM 17404
UMET351160 ncbi uncultured methanogenic archaeon RC-I4
TROS309801 ncbi Thermomicrobium roseum DSM 51593
TKOD69014 ncbi Thermococcus kodakarensis KOD13
TERY203124 ncbi Trichodesmium erythraeum IMS1013
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12513
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252593
TCRU317025 ncbi Thiomicrospira crunogena XCL-23
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT24
SSP94122 ncbi Shewanella sp. ANA-33
SSP387093 ncbi Sulfurovum sp. NBC37-13
SSON300269 ncbi Shigella sonnei Ss0464
SONE211586 ncbi Shewanella oneidensis MR-13
SHIGELLA ncbi Shigella flexneri 2a str. 2457T3
SHAL458817 ncbi Shewanella halifaxensis HAW-EB43
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB3
SFLE373384 ncbi Shigella flexneri 5 str. 84014
SFLE198214 ncbi Shigella flexneri 2a str. 3013
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23383
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4764
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B674
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91504
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT184
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty24
SDYS300267 ncbi Shigella dysenteriae Sd1974
SBOY300268 ncbi Shigella boydii Sb2274
SBAL402882 ncbi Shewanella baltica OS1853
SBAL399599 ncbi Shewanella baltica OS1953
SAVE227882 ncbi Streptomyces avermitilis MA-46803
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170253
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170293
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.13
RSP357808 ncbi Roseiflexus sp. RS-13
RSP101510 ncbi Rhodococcus jostii RHA13
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111704
RPAL316056 ncbi Rhodopseudomonas palustris BisB184
RPAL316055 ncbi Rhodopseudomonas palustris BisA533
RMET266264 ncbi Ralstonia metallidurans CH344
REUT381666 ncbi Ralstonia eutropha H164
RCAS383372 ncbi Roseiflexus castenholzii DSM 139413
PTHE370438 ncbi Pelotomaculum thermopropionicum SI3
PNAP365044 ncbi Polaromonas naphthalenivorans CJ24
PLUT319225 ncbi Chlorobium luteolum DSM 2733
PDIS435591 ncbi Parabacteroides distasonis ATCC 85033
PABY272844 ncbi Pyrococcus abyssi GE53
NSP387092 ncbi Nitratiruptor sp. SB155-23
NSP103690 ncbi Nostoc sp. PCC 71203
MTHE264732 ncbi Moorella thermoacetica ATCC 390733
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H4
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E4
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30913
MSME246196 ncbi Mycobacterium smegmatis MC2 1553
MPET420662 ncbi Methylibium petroleiphilum PM13
MMAZ192952 ncbi Methanosarcina mazei Go14
MMAR444158 ncbi Methanococcus maripaludis C64
MMAR426368 ncbi Methanococcus maripaludis C74
MMAR402880 ncbi Methanococcus maripaludis C54
MMAR368407 ncbi Methanoculleus marisnigri JR14
MMAR267377 ncbi Methanococcus maripaludis S24
MMAG342108 ncbi Magnetospirillum magneticum AMB-13
MLAB410358 ncbi Methanocorpusculum labreanum Z3
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26613
MHUN323259 ncbi Methanospirillum hungatei JF-14
MCAP243233 ncbi Methylococcus capsulatus Bath3
MBAR269797 ncbi Methanosarcina barkeri Fusaro4
MAEO419665 ncbi Methanococcus aeolicus Nankai-34
MACE188937 ncbi Methanosarcina acetivorans C2A4
HPYL85963 ncbi Helicobacter pylori J993
HPYL357544 ncbi Helicobacter pylori HPAG13
HPY ncbi Helicobacter pylori 266953
HMOD498761 ncbi Heliobacterium modesticaldum Ice13
HHEP235279 ncbi Helicobacter hepaticus ATCC 514494
HACI382638 ncbi Helicobacter acinonychis Sheeba3
GURA351605 ncbi Geobacter uraniireducens Rf44
GSUL243231 ncbi Geobacter sulfurreducens PCA4
GMET269799 ncbi Geobacter metallireducens GS-154
FSP1855 Frankia sp. EAN1pec4
FSP106370 ncbi Frankia sp. CcI34
FALN326424 ncbi Frankia alni ACN14a4
EFER585054 ncbi Escherichia fergusonii ATCC 354694
ECOO157 ncbi Escherichia coli O157:H7 EDL9334
ECOL83334 Escherichia coli O157:H74
ECOL585397 ncbi Escherichia coli ED1a4
ECOL585057 ncbi Escherichia coli IAI394
ECOL585056 ncbi Escherichia coli UMN0264
ECOL585055 ncbi Escherichia coli 559894
ECOL585035 ncbi Escherichia coli S884
ECOL585034 ncbi Escherichia coli IAI14
ECOL481805 ncbi Escherichia coli ATCC 87394
ECOL469008 ncbi Escherichia coli BL21(DE3)4
ECOL439855 ncbi Escherichia coli SMS-3-54
ECOL413997 ncbi Escherichia coli B str. REL6064
ECOL409438 ncbi Escherichia coli SE114
ECOL405955 ncbi Escherichia coli APEC O14
ECOL364106 ncbi Escherichia coli UTI894
ECOL362663 ncbi Escherichia coli 5364
ECOL331111 ncbi Escherichia coli E24377A4
ECOL316407 ncbi Escherichia coli K-12 substr. W31104
ECOL199310 ncbi Escherichia coli CFT0734
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10434
DSP255470 ncbi Dehalococcoides sp. CBDB14
DSP216389 ncbi Dehalococcoides sp. BAV14
DPSY177439 ncbi Desulfotalea psychrophila LSv544
DHAF138119 ncbi Desulfitobacterium hafniense Y513
DETH243164 ncbi Dehalococcoides ethenogenes 1954
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G204
DARO159087 ncbi Dechloromonas aromatica RCB3
CTEP194439 ncbi Chlorobium tepidum TLS3
CSP501479 Citreicella sp. SE453
CJEJ407148 ncbi Campylobacter jejuni jejuni 811163
CJEJ360109 ncbi Campylobacter jejuni doylei 269.973
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1763
CJEJ195099 ncbi Campylobacter jejuni RM12213
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111683
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29014
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3813
CFET360106 ncbi Campylobacter fetus fetus 82-404
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131293
CCUR360105 ncbi Campylobacter curvus 525.924
CCON360104 ncbi Campylobacter concisus 138264
BVIE269482 ncbi Burkholderia vietnamiensis G44
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1104
AVAR240292 ncbi Anabaena variabilis ATCC 294133
ASP62928 ncbi Azoarcus sp. BH724
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4494
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL034
APLE416269 ncbi Actinobacillus pleuropneumoniae L203
AHYD196024 Aeromonas hydrophila dhakensis4
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43044
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232703
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-13
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C3
ACRY349163 ncbi Acidiphilium cryptum JF-53
ACAU438753 ncbi Azorhizobium caulinodans ORS 5713
ABUT367737 ncbi Arcobacter butzleri RM40183
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3453


Names of the homologs of the genes in the group in each of these orgs
  G7414   EG11802   EG10485   EG10471   
YENT393305 YE2808YE3605YE2796YE3605
XAUT78245 XAUT_2176XAUT_2185XAUT_2176
WSUC273121 WS1834WS1684WS0792WS1684
UMET351160 RCIX554RCIX1854RCIX525RCIA172
TROS309801 TRD_1873TRD_1869TRD_1873
TKOD69014 TK2004TK2066TK2001
TERY203124 TERY_3367TERY_0794TERY_3367
TDEN326298 TMDEN_1433TMDEN_1429TMDEN_1433
TDEN292415 TBD_1380TBD_1381TBD_1380
TCRU317025 TCR_2036TCR_2042TCR_2036
STYP99287 STM2845STM3146STM2856STM1789
SSP94122 SHEWANA3_1877SHEWANA3_1870SHEWANA3_1877
SSP387093 SUN_1642SUN_1648SUN_1642
SSON300269 SSO_2864SSO_3138SSO_2875SSO_0981
SONE211586 SO_2096SO_2092SO_2096
SHIGELLA HYBDHYPCHYAD
SHAL458817 SHAL_2264SHAL_2268SHAL_2264
SFUM335543 SFUM_2220SFUM_2951SFUM_2951
SFLE373384 SFV_2786SFV_3046SFV_2775SFV_0984
SFLE198214 AAN44518.1AAN44236.1AAN42604.1
SERY405948 SACE_3059SACE_3072SACE_3059
SENT454169 SEHA_C3032SEHA_C3393SEHA_C3045SEHA_C1987
SENT321314 SCH_2778SCH_3087SCH_2789SCH_1784
SENT295319 SPA2703SPA3014SPA2714SPA1084
SENT220341 STY2967STY3317STY2978STY1916
SENT209261 T2747T3067T2758T1087
SDYS300267 SDY_2914SDY_3080SDY_2925SDY_0950
SBOY300268 SBO_2801SBO_2870SBO_2792SBO_2256
SBAL402882 SHEW185_1912SHEW185_1907SHEW185_1912
SBAL399599 SBAL195_1919SBAL195_1914SBAL195_1919
SAVE227882 SAV7372SAV7376SAV7372
RSPH349102 RSPH17025_3372RSPH17025_3363RSPH17025_3372
RSPH349101 RSPH17029_2150RSPH17029_2159RSPH17029_2150
RSPH272943 RSP_0499RSP_0508RSP_0499
RSP357808 ROSERS_2322ROSERS_0973ROSERS_2322
RSP101510 RHA1_RO00032RHA1_RO04619RHA1_RO04609
RRUB269796 RRU_A0322RRU_A1164RRU_A0307RRU_A1164
RPAL316056 RPC_4566RPC_3769RPC_4558RPC_3769
RPAL316055 RPE_1234RPE_1244RPE_1234
RMET266264 RMET_1293RMET_1293RMET_1283RMET_1293
REUT381666 PHG005PHG005PHG073PHG005
RCAS383372 RCAS_3145RCAS_3797RCAS_3145
PTHE370438 PTH_1700PTH_1697PTH_1700
PNAP365044 PNAP_1971PNAP_1971PNAP_1961PNAP_1971
PLUT319225 PLUT_1449PLUT_1456PLUT_1449
PDIS435591 BDI_1814BDI_1808BDI_1814
PABY272844 PAB0576PAB0576PAB7315
NSP387092 NIS_0966NIS_0975NIS_0966
NSP103690 ALR1423ASR0695ALR1423
MTHE264732 MOTH_2182MOTH_2182MOTH_2178
MTHE187420 MTH737MTH737MTH1649MTH737
MSUC221988 MS2360MS2360MS2358MS2360
MSTA339860 MSP_1216MSP_1514MSP_1067
MSME246196 MSMEG_3927MSMEG_2703MSMEG_2264
MPET420662 MPE_A2822MPE_A2822MPE_A2822
MMAZ192952 MM3044MM2172MM2164MM3044
MMAR444158 MMARC6_1488MMARC6_1336MMARC6_1343MMARC6_1336
MMAR426368 MMARC7_0432MMARC7_0582MMARC7_0575MMARC7_0582
MMAR402880 MMARC5_0405MMARC5_0256MMARC5_0263MMARC5_0648
MMAR368407 MEMAR_2175MEMAR_1014MEMAR_1024MEMAR_1014
MMAR267377 MMP1185MMP1337MMP1330MMP1337
MMAG342108 AMB1646AMB1640AMB1646
MLAB410358 MLAB_1136MLAB_0366MLAB_0014
MJAN243232 MJ_0631MJ_0253MJ_0253
MHUN323259 MHUN_2728MHUN_2331MHUN_1499MHUN_2331
MCAP243233 MCA_0162MCA_1600MCA_0162
MBAR269797 MBAR_A0451MBAR_A1844MBAR_A1848MBAR_A0451
MAEO419665 MAEO_1351MAEO_0777MAEO_1090MAEO_0777
MACE188937 MA0976MA1144MA1140MA0976
HPYL85963 JHP0577JHP0836JHP0577
HPYL357544 HPAG1_0617HPAG1_0879HPAG1_0617
HPY HP0634HP0899HP0634
HMOD498761 HM1_1481HM1_1485HM1_1481
HHEP235279 HH_0059HH_0059HH_0324HH_0059
HACI382638 HAC_0747HAC_1287HAC_0747
GURA351605 GURA_0542GURA_0542GURA_1951GURA_0542
GSUL243231 GSU_0120GSU_0120GSU_0307GSU_0120
GMET269799 GMET_3329GMET_3329GMET_0118GMET_3329
FSP1855 FRANEAN1_2487FRANEAN1_3406FRANEAN1_2486FRANEAN1_3406
FSP106370 FRANCCI3_1075FRANCCI3_4495FRANCCI3_1071FRANCCI3_1075
FALN326424 FRAAL1828FRAAL1828FRAAL2398FRAAL2391
EFER585054 EFER_0360EFER_2936EFER_0349EFER_1113
ECOO157 HYCIHYBDHYPCHYAD
ECOL83334 ECS3573ECS3878ECS3584ECS1131
ECOL585397 ECED1_3168ECED1_3643ECED1_3180ECED1_1059
ECOL585057 ECIAI39_2905ECIAI39_3489ECIAI39_2917ECIAI39_2171
ECOL585056 ECUMN_3039ECUMN_3477ECUMN_3051ECUMN_1165
ECOL585055 EC55989_2983EC55989_3410EC55989_2995EC55989_1083
ECOL585035 ECS88_2982ECS88_3375ECS88_2993ECS88_0997
ECOL585034 ECIAI1_2811ECIAI1_3142ECIAI1_2823ECIAI1_1016
ECOL481805 ECOLC_0995ECOLC_0700ECOLC_0984ECOLC_2621
ECOL469008 ECBD_1008ECBD_0745ECBD_0997ECBD_2620
ECOL439855 ECSMS35_2842ECSMS35_3279ECSMS35_2853ECSMS35_2142
ECOL413997 ECB_02567ECB_02869ECB_02578ECB_00978
ECOL409438 ECSE_2965ECSE_3278ECSE_2976ECSE_1037
ECOL405955 APECO1_3808APECO1_3429APECO1_3797APECO1_79
ECOL364106 UTI89_C3080UTI89_C3415UTI89_C3091UTI89_C1043
ECOL362663 ECP_2680ECP_3079ECP_2691ECP_0980
ECOL331111 ECE24377A_3005ECE24377A_3462ECE24377A_3016ECE24377A_1090
ECOL316407 ECK2712:JW2687:B2717ECK2987:JW2961:B2993ECK2723:JW2698:B2728ECK0966:JW0957:B0975
ECOL199310 C3277C3730C3288C1116
ECAR218491 ECA1237ECA1229ECA1233ECA1229
DSP255470 CBDBA128CBDBA128CBDBA1400CBDBA128
DSP216389 DEHABAV1_0259DEHABAV1_0259DEHABAV1_1241DEHABAV1_0259
DPSY177439 DP1008DP0581DP0578DP0581
DHAF138119 DSY1596DSY2476DSY1596
DETH243164 DET_0616DET_0109DET_1433DET_0109
DDES207559 DDE_2136DDE_2139DDE_2140DDE_2139
DARO159087 DARO_3970DARO_3967DARO_3986
CTEP194439 CT_0780CT_1795CT_0780
CSP501479 CSE45_3035CSE45_3026CSE45_3035
CJEJ407148 C8J_1208C8J_0584C8J_1208
CJEJ360109 JJD26997_0462JJD26997_1045JJD26997_0462
CJEJ354242 CJJ81176_1280CJJ81176_0653CJJ81176_1280
CJEJ195099 CJE_1400CJE_0727CJE_1400
CJEJ192222 CJ1264CCJ0624CJ1264C
CHYD246194 CHY_1543CHY_1543CHY_1539CHY_1543
CHOM360107 CHAB381_0864CHAB381_0872CHAB381_0864
CFET360106 CFF8240_0123CFF8240_0937CFF8240_0932CFF8240_0937
CDIP257309 DIP0675DIP0667DIP0675
CCUR360105 CCV52592_1639CCV52592_1900CCV52592_1892CCV52592_1900
CCON360104 CCC13826_0715CCC13826_0098CCC13826_1095CCC13826_0098
BVIE269482 BCEP1808_5934BCEP1808_5934BCEP1808_5944BCEP1808_5934
BJAP224911 BLL6939BLL6939BLR1735BLL6939
AVAR240292 AVA_3947AVA_4603AVA_3947
ASP62928 AZO3792AZO3792AZO3802AZO3792
ASAL382245 ASA_1808ASA_1792ASA_1803ASA_1792
APLE434271 APJL_1353APJL_1353APJL_1355APJL_1353
APLE416269 APL_1335APL_1337APL_1335
AHYD196024 AHA_2506AHA_2522AHA_2511AHA_2522
AFUL224325 AF_1378AF_1378AF_1369AF_1378
AFER243159 AFE_3052AFE_2327AFE_3052
AEHR187272 MLG_2026MLG_2016MLG_2026
ADEH290397 ADEH_0477ADEH_0475ADEH_0477
ACRY349163 ACRY_0335ACRY_0326ACRY_0335
ACAU438753 AZC_0601AZC_0610AZC_0601
ABUT367737 ABU_1432ABU_1407ABU_1432
ABAC204669 ACID345_4241ACID345_1706ACID345_4241


Organism features enriched in list (features available for 134 out of the 138 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Aggregates 0.005338069
Arrangment:Filaments 0.0017005710
Disease:Dysentery 0.000135166
GC_Content_Range4:0-40 2.312e-725213
GC_Content_Range4:40-60 1.789e-777224
GC_Content_Range7:0-30 0.0014975347
GC_Content_Range7:30-40 0.000122522166
GC_Content_Range7:50-60 4.517e-847107
Genome_Size_Range5:2-4 0.000449630197
Genome_Size_Range5:4-6 1.311e-665184
Genome_Size_Range9:3-4 0.0038685977
Genome_Size_Range9:4-5 0.00379453296
Genome_Size_Range9:5-6 0.00035773388
Gram_Stain:Gram_Neg 0.000037396333
Gram_Stain:Gram_Pos 3.916e-812150
Motility:No 0.001288722151
Motility:Yes 2.586e-889267
Oxygen_Req:Aerobic 3.768e-720185
Oxygen_Req:Anaerobic 0.000321937102
Oxygen_Req:Facultative 0.001505460201
Oxygen_Req:Microaerophilic 7.872e-71418
Pathogenic_in:Animal 0.0013822666
Shape:Coccus 0.0000117582
Shape:Irregular_coccus 2.864e-61317
Shape:Spiral 0.00001501934



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 451
Effective number of orgs (counting one per cluster within 468 clusters): 333

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM40
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317580
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329530
YPES386656 ncbi Yersinia pestis Pestoides F0
YPES377628 ncbi Yersinia pestis Nepal5160
YPES360102 ncbi Yersinia pestis Antiqua0
YPES349746 ncbi Yersinia pestis Angola0
YPES214092 ncbi Yersinia pestis CO920
YPES187410 ncbi Yersinia pestis KIM 100
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A0
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110180
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103310
XFAS405440 ncbi Xylella fastidiosa M120
XFAS183190 ncbi Xylella fastidiosa Temecula10
XFAS160492 ncbi Xylella fastidiosa 9a5c0
XCAM487884 Xanthomonas campestris pv. paulliniae0
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-100
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80040
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339130
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3060
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
VVUL216895 ncbi Vibrio vulnificus CMCP60
VVUL196600 ncbi Vibrio vulnificus YJ0160
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106330
VFIS312309 ncbi Vibrio fischeri ES1140
VEIS391735 ncbi Verminephrobacter eiseniae EF01-20
VCHO345073 ncbi Vibrio cholerae O3950
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169610
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTUR377629 ncbi Teredinibacter turnerae T79010
TTHE300852 ncbi Thermus thermophilus HB80
TTHE262724 ncbi Thermus thermophilus HB270
TSP28240 Thermotoga sp.0
TSP1755 Thermoanaerobacter sp.0
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332230
TPET390874 ncbi Thermotoga petrophila RKU-10
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TMAR243274 ncbi Thermotoga maritima MSB80
TLET416591 ncbi Thermotoga lettingae TMO0
TFUS269800 ncbi Thermobifida fusca YX0
TELO197221 ncbi Thermosynechococcus elongatus BP-10
TDEN243275 ncbi Treponema denticola ATCC 354050
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen0
STRO369723 ncbi Salinispora tropica CNB-4400
STOK273063 ncbi Sulfolobus tokodaii 70
STHE322159 ncbi Streptococcus thermophilus LMD-90
STHE299768 ncbi Streptococcus thermophilus CNRZ10660
STHE292459 ncbi Symbiobacterium thermophilum IAM 148630
STHE264199 ncbi Streptococcus thermophilus LMG 183110
SSUI391296 ncbi Streptococcus suis 98HAH330
SSUI391295 ncbi Streptococcus suis 05ZYH330
SSP84588 ncbi Synechococcus sp. WH 81020
SSP64471 ncbi Synechococcus sp. CC93110
SSP644076 Silicibacter sp. TrichCH4B0
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)0
SSP321327 ncbi Synechococcus sp. JA-3-3Ab0
SSP292414 ncbi Ruegeria sp. TM10400
SSP1148 ncbi Synechocystis sp. PCC 68031
SSP1131 Synechococcus sp. CC96050
SSOL273057 ncbi Sulfolobus solfataricus P20
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153050
SRUB309807 ncbi Salinibacter ruber DSM 138550
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370552 ncbi Streptococcus pyogenes MGAS102700
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103940
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SPNE488221 ncbi Streptococcus pneumoniae 705850
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-60
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-140
SPNE171101 ncbi Streptococcus pneumoniae R60
SPNE170187 ncbi Streptococcus pneumoniae G540
SPNE1313 Streptococcus pneumoniae0
SMUT210007 ncbi Streptococcus mutans UA1590
SMEL266834 ncbi Sinorhizobium meliloti 10210
SMED366394 ncbi Sinorhizobium medicae WSM4190
SMAR399550 ncbi Staphylothermus marinus F11
SLAC55218 Ruegeria lacuscaerulensis0
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14350
SGOR29390 Streptococcus gordonii Challis0
SGLO343509 ncbi Sodalis glossinidius morsitans0
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122280
SEPI176279 ncbi Staphylococcus epidermidis RP62A0
SELO269084 ncbi Synechococcus elongatus PCC 63010
SDEN318161 ncbi Shewanella denitrificans OS2170
SDEG203122 ncbi Saccharophagus degradans 2-400
SCO ncbi Streptomyces coelicolor A3(2)0
SAUR93062 ncbi Staphylococcus aureus aureus COL0
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83250
SAUR426430 ncbi Staphylococcus aureus aureus Newman0
SAUR418127 ncbi Staphylococcus aureus aureus Mu30
SAUR367830 Staphylococcus aureus aureus USA3000
SAUR359787 ncbi Staphylococcus aureus aureus JH10
SAUR359786 ncbi Staphylococcus aureus aureus JH90
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4760
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2520
SAUR273036 ncbi Staphylococcus aureus RF1220
SAUR196620 ncbi Staphylococcus aureus aureus MW20
SAUR158879 ncbi Staphylococcus aureus aureus N3150
SAUR158878 ncbi Staphylococcus aureus aureus Mu500
SARE391037 ncbi Salinispora arenicola CNS-2050
SAGA211110 ncbi Streptococcus agalactiae NEM3160
SAGA208435 ncbi Streptococcus agalactiae 2603V/R0
SAGA205921 ncbi Streptococcus agalactiae A9090
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99410
RTYP257363 ncbi Rickettsia typhi Wilmington0
RSOL267608 ncbi Ralstonia solanacearum GMI10000
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332090
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RPOM246200 ncbi Ruegeria pomeroyi DSS-30
RPAL316058 ncbi Rhodopseudomonas palustris HaA20
RMAS416276 ncbi Rickettsia massiliae MTU50
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38410
RFEL315456 ncbi Rickettsia felis URRWXCal20
REUT264198 ncbi Ralstonia eutropha JMP1340
RETL347834 ncbi Rhizobium etli CFN 420
RDEN375451 ncbi Roseobacter denitrificans OCh 1140
RCON272944 ncbi Rickettsia conorii Malish 70
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RALB246199 Ruminococcus albus 80
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97900
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30000
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a0
PSTU379731 ncbi Pseudomonas stutzeri A15010
PSP56811 Psychrobacter sp.0
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-10
PSP296591 ncbi Polaromonas sp. JS6660
PSP117 Pirellula sp.0
PRUM264731 ncbi Prevotella ruminicola 230
PPUT76869 ncbi Pseudomonas putida GB-10
PPUT351746 ncbi Pseudomonas putida F10
PPUT160488 ncbi Pseudomonas putida KT24400
PPRO298386 ncbi Photobacterium profundum SS90
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257450
PMUL272843 ncbi Pasteurella multocida multocida Pm700
PMOB403833 ncbi Petrotoga mobilis SJ950
PMEN399739 ncbi Pseudomonas mendocina ymp0
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74547 ncbi Prochlorococcus marinus MIT 93130
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR59920 ncbi Prochlorococcus marinus NATL2A0
PMAR167555 ncbi Prochlorococcus marinus NATL1A0
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13750
PMAR146891 ncbi Prochlorococcus marinus AS96010
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO10
PINT246198 Prevotella intermedia 170
PING357804 ncbi Psychromonas ingrahamii 370
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1250
PGIN242619 ncbi Porphyromonas gingivalis W830
PFLU220664 ncbi Pseudomonas fluorescens Pf-50
PFLU216595 ncbi Pseudomonas fluorescens SBW250
PFLU205922 ncbi Pseudomonas fluorescens Pf0-10
PENT384676 ncbi Pseudomonas entomophila L480
PCRY335284 ncbi Psychrobacter cryohalolentis K50
PCAR338963 ncbi Pelobacter carbinolicus DSM 23800
PATL342610 ncbi Pseudoalteromonas atlantica T6c0
PAST100379 Onion yellows phytoplasma0
PARC259536 ncbi Psychrobacter arcticus 273-40
PAER208964 ncbi Pseudomonas aeruginosa PAO10
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA140
PAER178306 ncbi Pyrobaculum aerophilum IM20
PACN267747 ncbi Propionibacterium acnes KPA1712020
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
OIHE221109 ncbi Oceanobacillus iheyensis HTE8310
OCAR504832 ncbi Oligotropha carboxidovorans OM50
OANT439375 ncbi Ochrobactrum anthropi ATCC 491880
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2550
NSP35761 Nocardioides sp.0
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
NOCE323261 ncbi Nitrosococcus oceani ATCC 197070
NMUL323848 ncbi Nitrosospira multiformis ATCC 251961
NMEN374833 ncbi Neisseria meningitidis 0534420
NMEN272831 ncbi Neisseria meningitidis FAM180
NMEN122587 ncbi Neisseria meningitidis Z24910
NMEN122586 ncbi Neisseria meningitidis MC580
NHAM323097 ncbi Nitrobacter hamburgensis X140
NGON242231 ncbi Neisseria gonorrhoeae FA 10900
NFAR247156 ncbi Nocardia farcinica IFM 101520
NEUT335283 ncbi Nitrosomonas eutropha C910
NEUR228410 ncbi Nitrosomonas europaea ATCC 197180
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124440
MXAN246197 ncbi Myxococcus xanthus DK 16220
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra0
MTUB336982 ncbi Mycobacterium tuberculosis F110
MTHE349307 ncbi Methanosaeta thermophila PT0
MTBRV ncbi Mycobacterium tuberculosis H37Rv0
MTBCDC ncbi Mycobacterium tuberculosis CDC15510
MSYN262723 ncbi Mycoplasma synoviae 530
MSP409 Methylobacterium sp.0
MSP400668 ncbi Marinomonas sp. MWYL10
MSP266779 ncbi Chelativorans sp. BNC10
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAR394221 ncbi Maricaulis maris MCS100
MLOT266835 ncbi Mesorhizobium loti MAFF3030990
MLEP272631 ncbi Mycobacterium leprae TN0
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK1
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MFLA265072 ncbi Methylobacillus flagellatus KT0
MEXT419610 ncbi Methylobacterium extorquens PA10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P20
MBOV233413 ncbi Mycobacterium bovis AF2122/970
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAQU351348 ncbi Marinobacter aquaeolei VT80
MAER449447 ncbi Microcystis aeruginosa NIES-8431
MABS561007 ncbi Mycobacterium abscessus ATCC 199770
LXYL281090 ncbi Leifsonia xyli xyli CTCB070
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53340
LSPH444177 ncbi Lysinibacillus sphaericus C3-410
LSAK314315 ncbi Lactobacillus sakei sakei 23K0
LREU557436 ncbi Lactobacillus reuteri DSM 200160
LPNE400673 ncbi Legionella pneumophila Corby1
LPNE297246 ncbi Legionella pneumophila Paris1
LPNE297245 ncbi Legionella pneumophila Lens1
LPLA220668 ncbi Lactobacillus plantarum WCFS10
LMON265669 ncbi Listeria monocytogenes 4b F23650
LMON169963 ncbi Listeria monocytogenes EGD-e0
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82930
LLAC272623 ncbi Lactococcus lactis lactis Il14030
LLAC272622 ncbi Lactococcus lactis cremoris SK110
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1300
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566010
LINN272626 ncbi Listeria innocua Clip112620
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LCHO395495 ncbi Leptothrix cholodnii SP-61
LCAS321967 ncbi Lactobacillus casei ATCC 3340
LBRE387344 ncbi Lactobacillus brevis ATCC 3670
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1970
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5500
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)0
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)0
LACI272621 ncbi Lactobacillus acidophilus NCFM0
KRAD266940 ncbi Kineococcus radiotolerans SRS302160
JSP375286 ncbi Janthinobacterium sp. Marseille0
JSP290400 ncbi Jannaschia sp. CCS10
ILOI283942 ncbi Idiomarina loihiensis L2TR0
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I1
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSOM228400 ncbi Haemophilus somnus 23360
HSOM205914 ncbi Haemophilus somnus 129PT0
HSAL478009 ncbi Halobacterium salinarum R10
HNEP81032 Hyphomonas neptunium0
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMAR272569 ncbi Haloarcula marismortui ATCC 430490
HINF71421 ncbi Haemophilus influenzae Rd KW200
HINF374930 ncbi Haemophilus influenzae PittEE1
HINF281310 ncbi Haemophilus influenzae 86-028NP0
HHAL349124 ncbi Halorhodospira halophila SL10
HDUC233412 ncbi Haemophilus ducreyi 35000HP0
HCHE349521 ncbi Hahella chejuensis KCTC 23961
HBUT415426 ncbi Hyperthermus butylicus DSM 54561
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237790
HARS204773 ncbi Herminiimonas arsenicoxydans0
GVIO251221 ncbi Gloeobacter violaceus PCC 74210
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-20
GOXY290633 ncbi Gluconobacter oxydans 621H0
GKAU235909 ncbi Geobacillus kaustophilus HTA4260
GFOR411154 ncbi Gramella forsetii KT08030
GBET391165 ncbi Granulibacter bethesdensis CGDNIH10
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-000
FTUL418136 ncbi Francisella tularensis tularensis WY96-34180
FTUL401614 ncbi Francisella novicida U1120
FTUL393115 ncbi Francisella tularensis tularensis FSC1980
FTUL393011 ncbi Francisella tularensis holarctica OSU180
FTUL351581 Francisella tularensis holarctica FSC2000
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S850
FRANT ncbi Francisella tularensis tularensis SCHU S40
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250171
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255860
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B10
FMAG334413 ncbi Finegoldia magna ATCC 293280
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ELIT314225 ncbi Erythrobacter litoralis HTCC25940
EFAE226185 ncbi Enterococcus faecalis V5830
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DSHI398580 ncbi Dinoroseobacter shibae DFL 120
DRED349161 ncbi Desulfotomaculum reducens MI-10
DRAD243230 ncbi Deinococcus radiodurans R10
DOLE96561 ncbi Desulfococcus oleovorans Hxd30
DNOD246195 ncbi Dichelobacter nodosus VCS1703A0
DGEO319795 ncbi Deinococcus geothermalis DSM 113000
CVIO243365 ncbi Chromobacterium violaceum ATCC 124720
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA0
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTET212717 ncbi Clostridium tetani E880
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CSP78 Caulobacter sp.0
CSAL290398 ncbi Chromohalobacter salexigens DSM 30430
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)0
CPSY167879 ncbi Colwellia psychrerythraea 34H0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE250
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPHY357809 ncbi Clostridium phytofermentans ISDg0
CPER289380 ncbi Clostridium perfringens SM1010
CPER195103 ncbi Clostridium perfringens ATCC 131240
CPER195102 ncbi Clostridium perfringens 130
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10620
CNOV386415 ncbi Clostridium novyi NT0
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3820
CMIC31964 ncbi Clavibacter michiganensis sepedonicus0
CMET456442 ncbi Candidatus Methanoregula boonei 6A81
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKLU431943 ncbi Clostridium kluyveri DSM 5550
CJEI306537 ncbi Corynebacterium jeikeium K4110
CJAP155077 Cellvibrio japonicus0
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334060
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130320
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CEFF196164 ncbi Corynebacterium efficiens YS-3140
CDIF272563 ncbi Clostridium difficile 6300
CCHL340177 ncbi Chlorobium chlorochromatii CaD30
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1110
CBUR360115 ncbi Coxiella burnetii RSA 3310
CBUR227377 ncbi Coxiella burnetii RSA 4930
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto1
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6570
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B1
CBOT498213 ncbi Clostridium botulinum B1 str. Okra0
CBOT441772 ncbi Clostridium botulinum F str. Langeland1
CBOT441771 ncbi Clostridium botulinum A str. Hall1
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193971
CBOT36826 Clostridium botulinum A0
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN0
CBLO203907 ncbi Candidatus Blochmannia floridanus0
CAULO ncbi Caulobacter crescentus CB150
CACE272562 ncbi Clostridium acetobutylicum ATCC 8241
CABO218497 ncbi Chlamydophila abortus S26/30
BXEN266265 ncbi Burkholderia xenovorans LB4001
BWEI315730 ncbi Bacillus weihenstephanensis KBAB40
BTUR314724 ncbi Borrelia turicatae 91E1350
BTRI382640 ncbi Bartonella tribocorum CIP 1054760
BTHU412694 ncbi Bacillus thuringiensis Al Hakam0
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-270
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54820
BTHA271848 ncbi Burkholderia thailandensis E2640
BSUI470137 ncbi Brucella suis ATCC 234450
BSUI204722 ncbi Brucella suis 13300
BSUB ncbi Bacillus subtilis subtilis 1680
BSP36773 Burkholderia sp.0
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)0
BQUI283165 ncbi Bartonella quintana Toulouse0
BPUM315750 ncbi Bacillus pumilus SAFR-0320
BPSE320373 ncbi Burkholderia pseudomallei 6680
BPSE320372 ncbi Burkholderia pseudomallei 1710b0
BPSE272560 ncbi Burkholderia pseudomallei K962430
BPET94624 Bordetella petrii0
BPER257313 ncbi Bordetella pertussis Tohama I0
BPAR257311 ncbi Bordetella parapertussis 128220
BOVI236 Brucella ovis0
BMEL359391 ncbi Brucella melitensis biovar Abortus 23080
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M0
BMAL320389 ncbi Burkholderia mallei NCTC 102470
BMAL320388 ncbi Burkholderia mallei SAVP10
BMAL243160 ncbi Burkholderia mallei ATCC 233440
BLON206672 ncbi Bifidobacterium longum NCC27050
BLIC279010 ncbi Bacillus licheniformis ATCC 145800
BHER314723 ncbi Borrelia hermsii DAH0
BHEN283166 ncbi Bartonella henselae Houston-10
BHAL272558 ncbi Bacillus halodurans C-1250
BGAR290434 ncbi Borrelia garinii PBi0
BFRA295405 ncbi Bacteroides fragilis YCH460
BFRA272559 ncbi Bacteroides fragilis NCTC 93430
BCLA66692 ncbi Bacillus clausii KSM-K160
BCIC186490 Candidatus Baumannia cicadellinicola0
BCER572264 ncbi Bacillus cereus 03BB1020
BCER405917 Bacillus cereus W0
BCER315749 ncbi Bacillus cytotoxicus NVH 391-980
BCER288681 ncbi Bacillus cereus E33L0
BCER226900 ncbi Bacillus cereus ATCC 145790
BCEN331272 ncbi Burkholderia cenocepacia HI24240
BCEN331271 ncbi Burkholderia cenocepacia AU 10540
BCAN483179 ncbi Brucella canis ATCC 233650
BBUR224326 ncbi Borrelia burgdorferi B310
BBRO257310 ncbi Bordetella bronchiseptica RB500
BBAC360095 ncbi Bartonella bacilliformis KC5830
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1000
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)0
BANT592021 ncbi Bacillus anthracis A02480
BANT568206 ncbi Bacillus anthracis CDC 6840
BANT261594 ncbi Bacillus anthracis Ames Ancestor0
BANT260799 ncbi Bacillus anthracis Sterne0
BAMY326423 ncbi Bacillus amyloliquefaciens FZB420
BAMB398577 ncbi Burkholderia ambifaria MC40-60
BAMB339670 ncbi Burkholderia ambifaria AMMD0
BAFZ390236 ncbi Borrelia afzelii PKo0
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9410
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP76114 ncbi Aromatoleum aromaticum EbN10
ASP62977 ncbi Acinetobacter sp. ADP10
ASP232721 ncbi Acidovorax sp. JS420
ASP1667 Arthrobacter sp.0
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K10
AORE350688 ncbi Alkaliphilus oremlandii OhILAs0
ANAE240017 Actinomyces oris MG10
AMET293826 ncbi Alkaliphilus metalliredigens QYMF0
AMAR329726 ncbi Acaryochloris marina MBIC110171
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
ACEL351607 ncbi Acidothermus cellulolyticus 11B0
ABOR393595 ncbi Alcanivorax borkumensis SK20
ABAU360910 ncbi Bordetella avium 197N0
AAVE397945 ncbi Acidovorax citrulli AAC00-10
AAUR290340 ncbi Arthrobacter aurescens TC10


Names of the homologs of the genes in the group in each of these orgs
  G7414   EG11802   EG10485   EG10471   
ZMOB264203
YPSE349747
YPSE273123
YPES386656
YPES377628
YPES360102
YPES349746
YPES214092
YPES187410
XORY360094
XORY342109
XORY291331
XFAS405440
XFAS183190
XFAS160492
XCAM487884
XCAM316273
XCAM314565
XCAM190485
XAXO190486
WPIP955
WPIP80849
VVUL216895
VVUL196600
VPAR223926
VFIS312309
VEIS391735
VCHO345073
VCHO
UURE95667
UURE95664
UPAR505682
TWHI218496
TWHI203267
TVOL273116
TTUR377629
TTHE300852
TTHE262724
TSP28240
TSP1755
TPSE340099
TPET390874
TPAL243276
TMAR243274
TLET416591
TFUS269800
TELO197221
TDEN243275
TACI273075
SWOL335541
STRO369723
STOK273063
STHE322159
STHE299768
STHE292459
STHE264199
SSUI391296
SSUI391295
SSP84588
SSP64471
SSP644076
SSP321332
SSP321327
SSP292414
SSP1148 SSL3580
SSP1131
SSOL273057
SSAP342451
SRUB309807
SPYO370554
SPYO370553
SPYO370552
SPYO370551
SPYO319701
SPYO293653
SPYO286636
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SPNE488221
SPNE487214
SPNE487213
SPNE171101
SPNE170187
SPNE1313
SMUT210007
SMEL266834
SMED366394
SMAR399550 SMAR_1452
SLAC55218
SHAE279808
SGOR29390
SGLO343509
SEPI176280
SEPI176279
SELO269084
SDEN318161
SDEG203122
SCO
SAUR93062
SAUR93061
SAUR426430
SAUR418127
SAUR367830
SAUR359787
SAUR359786
SAUR282459
SAUR282458
SAUR273036
SAUR196620
SAUR158879
SAUR158878
SARE391037
SAGA211110
SAGA208435
SAGA205921
SACI330779
RXYL266117
RTYP257363
RSOL267608
RSAL288705
RRIC452659
RRIC392021
RPRO272947
RPOM246200
RPAL316058
RMAS416276
RLEG216596
RFEL315456
REUT264198
RETL347834
RDEN375451
RCON272944
RCAN293613
RBEL391896
RBEL336407
RALB246199
RAKA293614
PTOR263820
PSYR223283
PSYR205918
PSTU379731
PSP56811
PSP312153
PSP296591
PSP117
PRUM264731
PPUT76869
PPUT351746
PPUT160488
PPRO298386
PPEN278197
PMUL272843
PMOB403833
PMEN399739
PMAR93060
PMAR74547
PMAR74546
PMAR59920
PMAR167555
PMAR167546
PMAR167542
PMAR167540
PMAR167539
PMAR146891
PLUM243265
PINT246198
PING357804
PHAL326442
PGIN242619
PFLU220664
PFLU216595
PFLU205922
PENT384676
PCRY335284
PCAR338963
PATL342610
PAST100379
PARC259536
PAER208964
PAER208963
PAER178306
PACN267747
OTSU357244
OIHE221109
OCAR504832
OANT439375
NWIN323098
NSP35761
NSEN222891
NPHA348780
NOCE323261
NMUL323848 NMUL_A1664
NMEN374833
NMEN272831
NMEN122587
NMEN122586
NHAM323097
NGON242231
NFAR247156
NEUT335283
NEUR228410
NARO279238
MXAN246197
MTUB419947
MTUB336982
MTHE349307
MTBRV
MTBCDC
MSYN262723
MSP409
MSP400668
MSP266779
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAR394221
MLOT266835
MLEP272631
MHYO295358
MHYO262722
MHYO262719
MGIL350054 MFLV_3980
MGEN243273
MFLO265311
MFLA265072
MEXT419610
MCAP340047
MBUR259564
MBOV410289
MBOV233413
MART243272
MAQU351348
MAER449447 MAE_61800
MABS561007
LXYL281090
LWEL386043
LSPH444177
LSAK314315
LREU557436
LPNE400673 LPC_2005
LPNE297246 LPP2538
LPNE297245 LPL2393
LPLA220668
LMON265669
LMON169963
LMES203120
LLAC272623
LLAC272622
LJOH257314
LINT267671
LINT189518
LINN272626
LHEL405566
LGAS324831
LDEL390333
LDEL321956
LCHO395495 LCHO_1347
LCAS321967
LBRE387344
LBOR355277
LBOR355276
LBIF456481
LBIF355278
LACI272621
KRAD266940
JSP375286
JSP290400
ILOI283942
IHOS453591 IGNI_0504
HWAL362976
HSP64091
HSOM228400
HSOM205914
HSAL478009
HNEP81032
HMUK485914
HMAR272569
HINF71421
HINF374930 CGSHIEE_04520
HINF281310
HHAL349124
HDUC233412
HCHE349521 HCH_00074
HBUT415426 HBUT_1372
HAUR316274
HARS204773
GVIO251221
GTHE420246
GOXY290633
GKAU235909
GFOR411154
GBET391165
FTUL458234
FTUL418136
FTUL401614
FTUL393115
FTUL393011
FTUL351581
FSUC59374
FRANT
FPHI484022 FPHI_0813
FNUC190304
FNOD381764
FMAG334413
ERUM302409
ERUM254945
ELIT314225
EFAE226185
ECHA205920
ECAN269484
DSHI398580
DRED349161
DRAD243230
DOLE96561
DNOD246195
DGEO319795
CVIO243365
CVES412965
CTRA471473
CTRA471472
CTET212717
CSUL444179
CSP78
CSAL290398
CRUT413404
CPSY167879
CPRO264201
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPHY357809
CPER289380
CPER195103
CPER195102
CPEL335992
CNOV386415
CMUR243161
CMIC443906
CMIC31964
CMET456442 MBOO_1411
CMAQ397948
CKLU431943
CJEI306537
CJAP155077
CHUT269798
CGLU196627
CFEL264202
CEFF196164
CDIF272563
CCHL340177
CCAV227941
CBUR434922
CBUR360115
CBUR227377
CBOT536232 CLM_1992
CBOT515621
CBOT508765 CLL_A2003
CBOT498213
CBOT441772 CLI_1830
CBOT441771 CLC_1777
CBOT441770 CLB_1770
CBOT36826
CBLO291272
CBLO203907
CAULO
CACE272562 CAC0808
CABO218497
BXEN266265 BXE_C0536
BWEI315730
BTUR314724
BTRI382640
BTHU412694
BTHU281309
BTHE226186
BTHA271848
BSUI470137
BSUI204722
BSUB
BSP36773
BSP107806
BQUI283165
BPUM315750
BPSE320373
BPSE320372
BPSE272560
BPET94624
BPER257313
BPAR257311
BOVI236
BMEL359391
BMEL224914
BMAL320389
BMAL320388
BMAL243160
BLON206672
BLIC279010
BHER314723
BHEN283166
BHAL272558
BGAR290434
BFRA295405
BFRA272559
BCLA66692
BCIC186490
BCER572264
BCER405917
BCER315749
BCER288681
BCER226900
BCEN331272
BCEN331271
BCAN483179
BBUR224326
BBRO257310
BBAC360095
BBAC264462
BAPH372461
BAPH198804
BANT592021
BANT568206
BANT261594
BANT260799
BAMY326423
BAMB398577
BAMB339670
BAFZ390236
BABO262698
AYEL322098
AURANTIMONAS
ASP76114
ASP62977
ASP232721
ASP1667
APHA212042
APER272557
AORE350688
ANAE240017
AMET293826
AMAR329726 AM1_D0188
AMAR234826
ALAI441768
ACEL351607
ABOR393595
ABAU360910
AAVE397945
AAUR290340


Organism features enriched in list (features available for 417 out of the 451 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Clusters 0.00305271717
Arrangment:Filaments 0.0062887310
Endospores:Yes 0.00888654553
GC_Content_Range4:0-40 9.850e-10183213
GC_Content_Range4:40-60 2.495e-8131224
GC_Content_Range7:0-30 0.00044554347
GC_Content_Range7:30-40 3.931e-6140166
GC_Content_Range7:50-60 1.491e-852107
Genome_Size_Range5:2-4 0.0001366159197
Genome_Size_Range5:4-6 3.379e-7106184
Genome_Size_Range9:0-1 0.00009172727
Genome_Size_Range9:3-4 0.00518966477
Genome_Size_Range9:5-6 0.00001554688
Gram_Stain:Gram_Neg 0.0002355220333
Gram_Stain:Gram_Pos 1.048e-7131150
Habitat:Host-associated 0.0023663161206
Motility:No 0.0005007123151
Motility:Yes 2.072e-9159267
Optimal_temp.:30-37 0.00215741818
Oxygen_Req:Aerobic 8.890e-8158185
Oxygen_Req:Anaerobic 0.000014055102
Oxygen_Req:Facultative 0.0038189131201
Oxygen_Req:Microaerophilic 0.0000135418
Pathogenic_in:Animal 0.00153345766
Pathogenic_in:Human 0.0001179171213
Pathogenic_in:No 0.0000878142226
Shape:Coccus 8.853e-67482
Shape:Irregular_coccus 4.096e-6317
Shape:Spiral 0.00037191534
Temp._range:Hyperthermophilic 0.00870541123



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
P283-PWY (hydrogen oxidation I (aerobic))78630.5340



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG11802   EG10485   EG10471   
G74140.998750.9985660.998738
EG118020.9992860.999811
EG104850.999173
EG10471



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PAIRWISE BLAST SCORES:

  G7414   EG11802   EG10485   EG10471   
G74140.0f0---
EG11802-0.0f0-5.2e-22
EG10485--0.0f0-
EG10471-2.0e-20-0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

G7414 (centered at G7414)
EG11802 (centered at EG11802)
EG10485 (centered at EG10485)
EG10471 (centered at EG10471)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7414   EG11802   EG10485   EG10471   
93/623164/623171/623153/623
AAEO224324:0:Tyes-0-0
ABAC204669:0:Tyes-256102561
ABUT367737:0:Tyes-25025
ACAU438753:0:Tyes-090
ACRY349163:8:Tyes-909
ADEH290397:0:Tyes-202
AEHR187272:0:Tyes-10010
AFER243159:0:Tyes-7170717
AFUL224325:0:Tyes9909
AHYD196024:0:Tyes015415
AMAR329726:5:Tyes--0-
APLE416269:0:Tyes-020
APLE434271:0:Tno0020
ASAL382245:5:Tyes160110
ASP62928:0:Tyes00100
AVAR240292:3:Tyes-06560
BJAP224911:0:Fyes5232523205232
BSP376:0:Tyes-0-0
BVIE269482:5:Tyes00100
BXEN266265:0:Tyes--0-
CACE272562:1:Tyes--0-
CBEI290402:0:Tyes--03
CBOT441770:0:Tyes--0-
CBOT441771:0:Tno--0-
CBOT441772:1:Tno--0-
CBOT508765:1:Tyes--0-
CBOT536232:0:Tno--0-
CCON360104:2:Tyes0793785793
CCUR360105:0:Tyes0706698706
CDES477974:0:Tyes-0-0
CDIP257309:0:Tyes-808
CFET360106:0:Tyes0788783788
CHOM360107:1:Tyes-080
CHYD246194:0:Tyes4404
CJEJ192222:0:Tyes-6200620
CJEJ195099:0:Tno-6480648
CJEJ354242:2:Tyes-6100610
CJEJ360109:0:Tyes-05550
CJEJ407148:0:Tno-6410641
CKOR374847:0:Tyes-03-
CMET456442:0:Tyes--0-
CSP501479:7:Fyes-909
CTEP194439:0:Tyes-010000
DARO159087:0:Tyes-3019
DDES207559:0:Tyes0343
DETH243164:0:Tyes498012800
DHAF138119:0:Tyes-08880
DPSY177439:2:Tyes454303
DSP216389:0:Tyes0010070
DSP255470:0:Tno0010890
DVUL882:1:Tyes-0-0
ECAR218491:0:Tyes8040
ECOL199310:0:Tno2115256021260
ECOL316407:0:Tno1748202317590
ECOL331111:6:Tno1838227618490
ECOL362663:0:Tno1703210117140
ECOL364106:1:Tno2033236820440
ECOL405955:2:Tyes1802215518130
ECOL409438:6:Tyes1959227719700
ECOL413997:0:Tno1590189416010
ECOL439855:4:Tno67610896870
ECOL469008:0:Tno26502541863
ECOL481805:0:Tno29702861922
ECOL585034:0:Tno1769208817800
ECOL585035:0:Tno1908228219190
ECOL585055:0:Tno1881229018920
ECOL585056:2:Tno1880230418910
ECOL585057:0:Tno74013317510
ECOL585397:0:Tno2039249720500
ECOL83334:0:Tno2495280725060
ECOLI:0:Tno1793207518040
ECOO157:0:Tno2414272624260
EFER585054:1:Tyes1125740758
ESP42895:1:Tyes0-11-
FALN326424:0:Tyes00558551
FJOH376686:0:Tyes-0-0
FPHI484022:1:Tyes--0-
FSP106370:0:Tyes4342604
FSP1855:0:Tyes18910891
GMET269799:1:Tyes3215321503215
GSUL243231:0:Tyes001850
GURA351605:0:Tyes0014010
HACI382638:1:Tyes-04930
HBUT415426:0:Tyes-0--
HCHE349521:0:Tyes--0-
HHEP235279:0:Tyes002690
HINF374930:0:Tyes--0-
HMOD498761:0:Tyes-040
HPY:0:Tno-02630
HPYL357544:1:Tyes-02660
HPYL85963:0:Tno-02560
IHOS453591:0:Tyes-0--
KPNE272620:2:Tyes0-11-
LCHO395495:0:Tyes0---
LINT363253:3:Tyes-0-0
LPNE272624:0:Tno-07-
LPNE297245:1:Fno--0-
LPNE297246:1:Fyes--0-
LPNE400673:0:Tno--0-
MACE188937:0:Tyes01571530
MAEO419665:0:Tyes56703070
MAER449447:0:Tyes--0-
MAVI243243:0:Tyes-0-0
MBAR269797:1:Tyes0137913830
MCAP243233:0:Tyes-013530
MGIL350054:3:Tyes--0-
MHUN323259:0:Tyes12108100810
MJAN243232:2:Tyes3900-0
MKAN190192:0:Tyes--01403
MLAB410358:0:Tyes1113-3500
MMAG342108:0:Tyes-606
MMAR267377:0:Tyes0157150157
MMAR368407:0:Tyes11820100
MMAR402880:1:Tyes14807388
MMAR426368:0:Tyes0155148155
MMAR444158:0:Tyes158070
MMAZ192952:0:Tyes89080890
MPET420662:1:Tyes00-0
MSED399549:0:Tyes-015-
MSME246196:0:Tyes-16504370
MSP164756:1:Tno-12920-
MSP164757:0:Tno-30-
MSP189918:2:Tyes-13070-
MSTA339860:0:Tyes1494450-
MSUC221988:0:Tyes2202
MTHE187420:0:Tyes009120
MTHE264732:0:Tyes440-
MVAN350058:0:Tyes-30-
NMUL323848:3:Tyes--0-
NSP103690:6:Tyes-7330733
NSP387092:0:Tyes-090
PABY272844:0:Tyes00385-
PARS340102:0:Tyes-0-0
PDIS435591:0:Tyes-606
PFUR186497:0:Tyes68-0-
PHOR70601:0:Tyes3150--
PISL384616:0:Tyes-0-0
PLUT319225:0:Tyes-070
PNAP365044:8:Tyes1010010
PTHE370438:0:Tyes-303
RCAS383372:0:Tyes-06410
REUT381666:0:Tyes00650
RFER338969:1:Tyes-0-0
RMET266264:2:Tyes1010010
RPAL258594:0:Tyes-0-0
RPAL316055:0:Tyes-0100
RPAL316056:0:Tyes79807900
RPAL316057:0:Tyes-0-0
RRUB269796:1:Tyes158530853
RSP101510:3:Fyes-045684558
RSP357808:0:Tyes-134001340
RSPH272943:4:Tyes-090
RSPH349101:2:Tno-090
RSPH349102:4:Tyes-909
SACI56780:0:Tyes0-2276-
SALA317655:0:Fyes--70
SAVE227882:1:Fyes-040
SBAL399599:3:Tyes-505
SBAL402882:1:Tno-505
SBOY300268:1:Tyes5195845100
SDYS300267:1:Tyes1849200418580
SENT209261:0:Tno1578188815890
SENT220341:0:Tno96812759790
SENT295319:0:Tno1552185215630
SENT321314:2:Tno1014132710250
SENT454169:2:Tno1001135010140
SERY405948:0:Tyes-0130
SFLE198214:0:Tyes-196216730
SFLE373384:0:Tno1704195316930
SFUM335543:0:Tyes0723-723
SHAL458817:0:Tyes-040
SHIGELLA:0:Tno-188616140
SLOI323850:0:Tyes-0-0
SMAR399550:0:Tyes0---
SONE211586:1:Tyes-404
SPEA398579:0:Tno-0-0
SPRO399741:1:Tyes0-11-
SSED425104:0:Tyes-0-0
SSON300269:1:Tyes1792205018030
SSP1148:0:Tyes--0-
SSP387093:0:Tyes-060
SSP94122:1:Tyes-707
STYP99287:1:Tyes1051135110620
TCRU317025:0:Tyes-060
TDEN292415:0:Tyes-010
TDEN326298:0:Tyes-404
TERY203124:0:Tyes-225702257
TKOD69014:0:Tyes3650-
TPEN368408:1:Tyes9110--
TROS309801:1:Tyes-404
TTEN273068:0:Tyes1487-0-
UMET351160:0:Tyes147444014950
WSUC273121:0:Tyes9438060806
XAUT78245:1:Tyes-090
YENT393305:1:Tyes128130813



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