CANDIDATE ID: 988

CANDIDATE ID: 988

NUMBER OF GENES: 4
AVERAGE SCORE:    9.9943450e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    2.5000000e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7682 (degQ) (b3234)
   Products of gene:
     - G7682-MONOMER (serine endoprotease, periplasmic)
       Reactions:
        a polypeptide[periplasmic space]  =  2 a polypeptide[periplasmic space]

- G7657 (yrbA) (b3190)
   Products of gene:
     - G7657-MONOMER (predicted DNA-binding transcriptional regulator)

- EG11652 (degS) (b3235)
   Products of gene:
     - EG11652-MONOMER (DegS serine endoprotease)

- EG10463 (degP) (b0161)
   Products of gene:
     - EG10463-MONOMER (DegP)
     - CPLX0-2921 (serine protease Do)
       Reactions:
        a polypeptide[periplasmic space]  =  2 a polypeptide[periplasmic space]



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ORGANISMS CONTAINING AT LEAST 3 GENES FROM THE GROUP:

Total number of orgs: 221
Effective number of orgs (counting one per cluster within 468 clusters): 151

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317584
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329534
YPES386656 ncbi Yersinia pestis Pestoides F4
YPES377628 ncbi Yersinia pestis Nepal5164
YPES360102 ncbi Yersinia pestis Antiqua4
YPES349746 ncbi Yersinia pestis Angola4
YPES214092 ncbi Yersinia pestis CO924
YPES187410 ncbi Yersinia pestis KIM 104
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80814
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A3
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110183
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103313
XFAS405440 ncbi Xylella fastidiosa M123
XFAS183190 ncbi Xylella fastidiosa Temecula13
XFAS160492 ncbi Xylella fastidiosa 9a5c3
XCAM487884 Xanthomonas campestris pv. paulliniae3
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-103
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80043
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339133
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3063
XAUT78245 ncbi Xanthobacter autotrophicus Py23
VVUL216895 ncbi Vibrio vulnificus CMCP64
VVUL196600 ncbi Vibrio vulnificus YJ0164
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106334
VFIS312309 ncbi Vibrio fischeri ES1144
VEIS391735 ncbi Verminephrobacter eiseniae EF01-23
VCHO345073 ncbi Vibrio cholerae O3954
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169614
TTUR377629 ncbi Teredinibacter turnerae T79014
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12513
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252594
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT24
SSP94122 ncbi Shewanella sp. ANA-34
SSON300269 ncbi Shigella sonnei Ss0464
SSED425104 ncbi Shewanella sediminis HAW-EB34
SPRO399741 ncbi Serratia proteamaculans 5684
SPEA398579 ncbi Shewanella pealeana ATCC 7003454
SONE211586 ncbi Shewanella oneidensis MR-14
SLOI323850 ncbi Shewanella loihica PV-44
SLAC55218 Ruegeria lacuscaerulensis3
SHIGELLA ncbi Shigella flexneri 2a str. 2457T4
SHAL458817 ncbi Shewanella halifaxensis HAW-EB44
SGLO343509 ncbi Sodalis glossinidius morsitans4
SFLE373384 ncbi Shigella flexneri 5 str. 84014
SFLE198214 ncbi Shigella flexneri 2a str. 3014
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4764
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B674
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91504
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT184
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty24
SDYS300267 ncbi Shigella dysenteriae Sd1974
SDEN318161 ncbi Shewanella denitrificans OS2174
SDEG203122 ncbi Saccharophagus degradans 2-404
SBOY300268 ncbi Shigella boydii Sb2274
SBAL402882 ncbi Shewanella baltica OS1854
SBAL399599 ncbi Shewanella baltica OS1954
SACI56780 ncbi Syntrophus aciditrophicus SB3
RSOL267608 ncbi Ralstonia solanacearum GMI10004
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111703
RPAL316058 ncbi Rhodopseudomonas palustris HaA23
RPAL316056 ncbi Rhodopseudomonas palustris BisB183
RPAL316055 ncbi Rhodopseudomonas palustris BisA533
RPAL258594 ncbi Rhodopseudomonas palustris CGA0093
RMET266264 ncbi Ralstonia metallidurans CH344
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38413
RFER338969 ncbi Rhodoferax ferrireducens T1184
REUT381666 ncbi Ralstonia eutropha H163
REUT264198 ncbi Ralstonia eutropha JMP1344
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30004
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a4
PSTU379731 ncbi Pseudomonas stutzeri A15014
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-13
PSP296591 ncbi Polaromonas sp. JS6664
PSP117 Pirellula sp.3
PPUT76869 ncbi Pseudomonas putida GB-14
PPUT351746 ncbi Pseudomonas putida F14
PPUT160488 ncbi Pseudomonas putida KT24404
PPRO298386 ncbi Photobacterium profundum SS94
PNAP365044 ncbi Polaromonas naphthalenivorans CJ24
PMUL272843 ncbi Pasteurella multocida multocida Pm704
PMEN399739 ncbi Pseudomonas mendocina ymp4
PLUT319225 ncbi Chlorobium luteolum DSM 2733
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO14
PING357804 ncbi Psychromonas ingrahamii 374
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1254
PFLU220664 ncbi Pseudomonas fluorescens Pf-54
PFLU216595 ncbi Pseudomonas fluorescens SBW253
PFLU205922 ncbi Pseudomonas fluorescens Pf0-14
PENT384676 ncbi Pseudomonas entomophila L484
PCAR338963 ncbi Pelobacter carbinolicus DSM 23803
PATL342610 ncbi Pseudoalteromonas atlantica T6c4
PAER208964 ncbi Pseudomonas aeruginosa PAO14
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA144
OCAR504832 ncbi Oligotropha carboxidovorans OM53
OANT439375 ncbi Ochrobactrum anthropi ATCC 491883
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2553
NOCE323261 ncbi Nitrosococcus oceani ATCC 197074
NMUL323848 ncbi Nitrosospira multiformis ATCC 251964
NHAM323097 ncbi Nitrobacter hamburgensis X143
NEUT335283 ncbi Nitrosomonas eutropha C914
NEUR228410 ncbi Nitrosomonas europaea ATCC 197184
MXAN246197 ncbi Myxococcus xanthus DK 16223
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E4
MSP409 Methylobacterium sp.3
MSP400668 ncbi Marinomonas sp. MWYL14
MSP266779 ncbi Chelativorans sp. BNC13
MPET420662 ncbi Methylibium petroleiphilum PM13
MMAR394221 ncbi Maricaulis maris MCS103
MMAG342108 ncbi Magnetospirillum magneticum AMB-14
MLOT266835 ncbi Mesorhizobium loti MAFF3030993
MFLA265072 ncbi Methylobacillus flagellatus KT3
MEXT419610 ncbi Methylobacterium extorquens PA14
MCAP243233 ncbi Methylococcus capsulatus Bath4
MAQU351348 ncbi Marinobacter aquaeolei VT83
LPNE400673 ncbi Legionella pneumophila Corby4
LPNE297246 ncbi Legionella pneumophila Paris4
LPNE297245 ncbi Legionella pneumophila Lens4
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 14
LCHO395495 ncbi Leptothrix cholodnii SP-64
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785784
JSP375286 ncbi Janthinobacterium sp. Marseille3
ILOI283942 ncbi Idiomarina loihiensis L2TR4
HSOM228400 ncbi Haemophilus somnus 23364
HSOM205914 ncbi Haemophilus somnus 129PT4
HPYL85963 ncbi Helicobacter pylori J993
HPYL357544 ncbi Helicobacter pylori HPAG13
HPY ncbi Helicobacter pylori 266953
HNEP81032 Hyphomonas neptunium3
HINF71421 ncbi Haemophilus influenzae Rd KW204
HINF374930 ncbi Haemophilus influenzae PittEE4
HINF281310 ncbi Haemophilus influenzae 86-028NP4
HHEP235279 ncbi Helicobacter hepaticus ATCC 514493
HHAL349124 ncbi Halorhodospira halophila SL13
HDUC233412 ncbi Haemophilus ducreyi 35000HP4
HCHE349521 ncbi Hahella chejuensis KCTC 23964
HARS204773 ncbi Herminiimonas arsenicoxydans3
HACI382638 ncbi Helicobacter acinonychis Sheeba3
GURA351605 ncbi Geobacter uraniireducens Rf43
GSUL243231 ncbi Geobacter sulfurreducens PCA3
GOXY290633 ncbi Gluconobacter oxydans 621H3
GMET269799 ncbi Geobacter metallireducens GS-153
ESP42895 Enterobacter sp.4
EFER585054 ncbi Escherichia fergusonii ATCC 354694
ECOO157 ncbi Escherichia coli O157:H7 EDL9334
ECOL83334 Escherichia coli O157:H74
ECOL585397 ncbi Escherichia coli ED1a4
ECOL585057 ncbi Escherichia coli IAI394
ECOL585056 ncbi Escherichia coli UMN0264
ECOL585055 ncbi Escherichia coli 559894
ECOL585035 ncbi Escherichia coli S884
ECOL585034 ncbi Escherichia coli IAI14
ECOL481805 ncbi Escherichia coli ATCC 87394
ECOL469008 ncbi Escherichia coli BL21(DE3)4
ECOL439855 ncbi Escherichia coli SMS-3-54
ECOL413997 ncbi Escherichia coli B str. REL6064
ECOL409438 ncbi Escherichia coli SE114
ECOL405955 ncbi Escherichia coli APEC O14
ECOL364106 ncbi Escherichia coli UTI894
ECOL362663 ncbi Escherichia coli 5364
ECOL331111 ncbi Escherichia coli E24377A4
ECOL316407 ncbi Escherichia coli K-12 substr. W31104
ECOL199310 ncbi Escherichia coli CFT0734
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10434
DPSY177439 ncbi Desulfotalea psychrophila LSv543
DOLE96561 ncbi Desulfococcus oleovorans Hxd33
DARO159087 ncbi Dechloromonas aromatica RCB3
CTEP194439 ncbi Chlorobium tepidum TLS3
CSAL290398 ncbi Chromohalobacter salexigens DSM 30434
CPSY167879 ncbi Colwellia psychrerythraea 34H4
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE253
CJAP155077 Cellvibrio japonicus4
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1113
CBUR360115 ncbi Coxiella burnetii RSA 3313
CBUR227377 ncbi Coxiella burnetii RSA 4933
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN4
CBLO203907 ncbi Candidatus Blochmannia floridanus4
BVIE269482 ncbi Burkholderia vietnamiensis G43
BTHA271848 ncbi Burkholderia thailandensis E2644
BSUI470137 ncbi Brucella suis ATCC 234453
BSUI204722 ncbi Brucella suis 13303
BSP376 Bradyrhizobium sp.3
BSP36773 Burkholderia sp.4
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)4
BQUI283165 ncbi Bartonella quintana Toulouse3
BPSE320373 ncbi Burkholderia pseudomallei 6684
BPSE320372 ncbi Burkholderia pseudomallei 1710b4
BPSE272560 ncbi Burkholderia pseudomallei K962434
BPET94624 Bordetella petrii3
BPER257313 ncbi Bordetella pertussis Tohama I3
BPAR257311 ncbi Bordetella parapertussis 128223
BOVI236 Brucella ovis3
BMEL359391 ncbi Brucella melitensis biovar Abortus 23083
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M3
BMAL320389 ncbi Burkholderia mallei NCTC 102474
BMAL320388 ncbi Burkholderia mallei SAVP14
BMAL243160 ncbi Burkholderia mallei ATCC 233444
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1103
BHEN283166 ncbi Bartonella henselae Houston-13
BCIC186490 Candidatus Baumannia cicadellinicola4
BCEN331272 ncbi Burkholderia cenocepacia HI24244
BCEN331271 ncbi Burkholderia cenocepacia AU 10544
BCAN483179 ncbi Brucella canis ATCC 233653
BBRO257310 ncbi Bordetella bronchiseptica RB503
BBAC360095 ncbi Bartonella bacilliformis KC5833
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)3
BAMB398577 ncbi Burkholderia ambifaria MC40-64
BAMB339670 ncbi Burkholderia ambifaria AMMD4
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9413
ASP76114 ncbi Aromatoleum aromaticum EbN13
ASP62977 ncbi Acinetobacter sp. ADP13
ASP62928 ncbi Azoarcus sp. BH723
ASP232721 ncbi Acidovorax sp. JS424
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4494
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL034
APLE416269 ncbi Actinobacillus pleuropneumoniae L204
AHYD196024 Aeromonas hydrophila dhakensis4
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-14
ACAU438753 ncbi Azorhizobium caulinodans ORS 5713
ABUT367737 ncbi Arcobacter butzleri RM40183
ABOR393595 ncbi Alcanivorax borkumensis SK24
ABAU360910 ncbi Bordetella avium 197N4


Names of the homologs of the genes in the group in each of these orgs
  G7682   G7657   EG11652   EG10463   
YPSE349747 YPSIP31758_0456YPSIP31758_0453YPSIP31758_0455YPSIP31758_0456
YPSE273123 YPTB3511YPTB3514YPTB3512YPTB3511
YPES386656 YPDSF_0331YPDSF_0327YPDSF_0329YPDSF_2976
YPES377628 YPN_3448YPN_3452YPN_3450YPN_0709
YPES360102 YPA_3737YPA_3733YPA_3735YPA_3737
YPES349746 YPANGOLA_A1137YPANGOLA_A1141YPANGOLA_A1139YPANGOLA_A1137
YPES214092 YPO3566YPO3570YPO3568YPO3566
YPES187410 Y0137Y0141Y0139Y0807
YENT393305 YE3744YE3747YE3745YE3744
XORY360094 XOOORF_0060XOOORF_0060XOOORF_0060
XORY342109 XOO0115XOO0115XOO0115
XORY291331 XOO0059XOO0059XOO0059
XFAS405440 XFASM12_0250XFASM12_0250XFASM12_0250
XFAS183190 PD_0231PD_0231PD_0231
XFAS160492 XF0285XF0285XF0285
XCAM487884 XCC-B100_4087XCC-B100_4087XCC-B100_4087
XCAM316273 XCAORF_0378XCAORF_0378XCAORF_0378
XCAM314565 XC_3986XC_3986XC_3986
XCAM190485 XCC3898XCC3898XCC3898
XAXO190486 XAC3980XAC3980XAC3980
XAUT78245 XAUT_3516XAUT_3516XAUT_3516
VVUL216895 VV1_0603VV1_0680VV1_0604VV1_0603
VVUL196600 VV0591VV0460VV0590VV0591
VPAR223926 VP0433VP2659VP0432VP0433
VFIS312309 VF2225VF0400VF2226VF2225
VEIS391735 VEIS_1784VEIS_4454VEIS_1784
VCHO345073 VC0395_A0100VC0395_A2097VC0395_A0099VC0395_A0100
VCHO VC0566VC2515VC0565VC0566
TTUR377629 TERTU_4641TERTU_3812TERTU_3683TERTU_4641
TDEN326298 TMDEN_2098TMDEN_2098TMDEN_2098
TDEN292415 TBD_1834TBD_1892TBD_1834TBD_2091
STYP99287 STM3348STM3308STM3349STM0209
SSP94122 SHEWANA3_0690SHEWANA3_0683SHEWANA3_0689SHEWANA3_0690
SSON300269 SSO_3375SSO_3338SSO_3376SSO_0174
SSED425104 SSED_0744SSED_0738SSED_0743SSED_0744
SPRO399741 SPRO_4352SPRO_4355SPRO_4353SPRO_0789
SPEA398579 SPEA_3598SPEA_3604SPEA_3599SPEA_3598
SONE211586 SO_3942SO_3949SO_3943SO_3942
SLOI323850 SHEW_3296SHEW_3299SHEW_3297SHEW_3296
SLAC55218 SL1157_3142SL1157_3011SL1157_3142
SHIGELLA HTRAYRBADEGSHTRA
SHAL458817 SHAL_3686SHAL_3693SHAL_3687SHAL_3686
SGLO343509 SG0213SG0210SG0212SG0505
SFLE373384 SFV_3261SFV_3220SFV_3262SFV_0146
SFLE198214 AAN44738.1AAN44696.1AAN44739.1AAN41816.1
SENT454169 SEHA_C3646SEHA_C3605SEHA_C3647SEHA_C3646
SENT321314 SCH_3286SCH_3246SCH_3287SCH_0209
SENT295319 SPA3215SPA3175SPA3216SPA3215
SENT220341 STY3528STY3487STY3529STY0231
SENT209261 T3264T3225T3265T3264
SDYS300267 SDY_3410SDY_3371SDY_3411SDY_0178
SDEN318161 SDEN_0504SDEN_0501SDEN_0503SDEN_0504
SDEG203122 SDE_3731SDE_3171SDE_3167SDE_3731
SBOY300268 SBO_3155SBO_3192SBO_3154SBO_0150
SBAL402882 SHEW185_0700SHEW185_0697SHEW185_0699SHEW185_0700
SBAL399599 SBAL195_0730SBAL195_0727SBAL195_0729SBAL195_0730
SACI56780 SYN_01706SYN_00527SYN_01706
RSOL267608 RSC2932RSC2954RSC2932RSC1058
RRUB269796 RRU_A0024RRU_A2662RRU_A2662
RPAL316058 RPB_2323RPB_2323RPB_2041
RPAL316056 RPC_3417RPC_3417RPC_3259
RPAL316055 RPE_3557RPE_3557RPE_2181
RPAL258594 RPA3221RPA3221RPA3488
RMET266264 RMET_3233RMET_3251RMET_3233RMET_3620
RLEG216596 RL1877RL1806RL1877
RFER338969 RFER_2959RFER_2943RFER_2959RFER_2959
REUT381666 H16_A3401H16_A3419H16_A3401
REUT264198 REUT_A3096REUT_A3114REUT_A3096REUT_A3096
PSYR223283 PSPTO_4435PSPTO_4442PSPTO_4435PSPTO_4221
PSYR205918 PSYR_4130PSYR_4136PSYR_4130PSYR_3955
PSTU379731 PST_1227PST_1043PST_1048PST_1227
PSP312153 PNUC_0123PNUC_0104PNUC_0123
PSP296591 BPRO_0817BPRO_0801BPRO_0817BPRO_0817
PSP117 RB1359RB1359RB1359
PPUT76869 PPUTGB1_4377PPUTGB1_0970PPUTGB1_4548PPUTGB1_4377
PPUT351746 PPUT_4291PPUT_1002PPUT_4424PPUT_4291
PPUT160488 PP_1430PP_0963PP_1301PP_1430
PPRO298386 PBPRA3240PBPRA3243PBPRA3241PBPRA3240
PNAP365044 PNAP_0709PNAP_0693PNAP_0709PNAP_0709
PMUL272843 PM0734PM0179PM0748PM0734
PMEN399739 PMEN_1471PMEN_0881PMEN_0888PMEN_1471
PLUT319225 PLUT_1467PLUT_1467PLUT_1467
PLUM243265 PLU4018PLU4029PLU4022PLU4018
PING357804 PING_1037PING_2882PING_2880PING_1037
PHAL326442 PSHAA2536PSHAA2539PSHAA2537PSHAA2536
PFLU220664 PFL_1451PFL_0926PFL_0933PFL_1451
PFLU216595 PFLU0893PFLU0758PFLU1471
PFLU205922 PFL_1365PFL_0868PFL_0875PFL_1365
PENT384676 PSEEN4293PSEEN1104PSEEN4521PSEEN4293
PCAR338963 PCAR_2948PCAR_2948PCAR_2948
PATL342610 PATL_0553PATL_0556PATL_0554PATL_0553
PAER208964 PA0766PA4451PA4446PA0766
PAER208963 PA14_54390PA14_57820PA14_57760PA14_54390
OCAR504832 OCAR_5281OCAR_5708OCAR_5281
OANT439375 OANT_2667OANT_1982OANT_1797
NWIN323098 NWI_2934NWI_1391NWI_2934
NOCE323261 NOC_2139NOC_2387NOC_2139NOC_2139
NMUL323848 NMUL_A0510NMUL_A2742NMUL_A0510NMUL_A0510
NHAM323097 NHAM_1572NHAM_1572NHAM_2725
NEUT335283 NEUT_1685NEUT_0858NEUT_1685NEUT_1685
NEUR228410 NE1508NE2377NE1508NE2329
MXAN246197 MXAN_2995MXAN_2023MXAN_2995
MSUC221988 MS0993MS1708MS1373MS0993
MSP409 M446_5887M446_0006M446_1718
MSP400668 MMWYL1_1102MMWYL1_2409MMWYL1_2404MMWYL1_1102
MSP266779 MESO_0901MESO_1651MESO_0901
MPET420662 MPE_A0844MPE_A0828MPE_A0844
MMAR394221 MMAR10_0942MMAR10_1769MMAR10_0942
MMAG342108 AMB3492AMB2116AMB3481AMB3492
MLOT266835 MLR7692MLR0328MLL5022
MFLA265072 MFLA_0261MFLA_0244MFLA_0261
MEXT419610 MEXT_2221MEXT_0012MEXT_3827MEXT_2656
MCAP243233 MCA_2343MCA_0260MCA_2343MCA_2343
MAQU351348 MAQU_2259MAQU_2704MAQU_2259
LPNE400673 LPC_0747LPC_2449LPC_0747LPC_0747
LPNE297246 LPP1285LPP0908LPP1285LPP1285
LPNE297245 LPL1284LPL0877LPL1284LPL1284
LPNE272624 LPG1331LPG0846LPG1331LPG1331
LCHO395495 LCHO_1605LCHO_1584LCHO_1605LCHO_1605
KPNE272620 GKPORF_B2968GKPORF_B2935GKPORF_B2969GKPORF_B4465
JSP375286 MMA_3275MMA_3291MMA_3275
ILOI283942 IL0411IL0408IL0410IL0411
HSOM228400 HSM_1285HSM_1585HSM_1533HSM_1285
HSOM205914 HS_0816HS_1168HS_1049HS_0816
HPYL85963 JHP0405JHP0405JHP0405
HPYL357544 HPAG1_0428HPAG1_0428HPAG1_0428
HPY HP1019HP1019HP1019
HNEP81032 HNE_1313HNE_2644HNE_0472
HINF71421 HI_1259HI_1082HI_0945HI_1259
HINF374930 CGSHIEE_04045CGSHIEE_06655CGSHIEE_07240CGSHIEE_04045
HINF281310 NTHI1905NTHI1245NTHI1116NTHI1905
HHEP235279 HH_0454HH_0454HH_0454
HHAL349124 HHAL_2110HHAL_2115HHAL_2110
HDUC233412 HD_0260HD_0254HD_1350HD_0260
HCHE349521 HCH_01114HCH_05308HCH_05303HCH_01114
HARS204773 HEAR3056HEAR3072HEAR3056
HACI382638 HAC_1123HAC_1123HAC_1123
GURA351605 GURA_4295GURA_4295GURA_4295
GSUL243231 GSU_0080GSU_0080GSU_0080
GOXY290633 GOX0798GOX1430GOX0798
GMET269799 GMET_3437GMET_1014GMET_1014
ESP42895 ENT638_3669ENT638_3626ENT638_3670ENT638_0701
EFER585054 EFER_3205EFER_3167EFER_3206EFER_3205
ECOO157 DEGQYRBADEGSHTRA
ECOL83334 ECS4107ECS4069ECS4108ECS0165
ECOL585397 ECED1_3884ECED1_3848ECED1_3885ECED1_0168
ECOL585057 ECIAI39_3724ECIAI39_3685ECIAI39_3725ECIAI39_0165
ECOL585056 ECUMN_3708ECUMN_3670ECUMN_3709ECUMN_3708
ECOL585055 EC55989_3647EC55989_3608EC55989_3648EC55989_0156
ECOL585035 ECS88_3610ECS88_3572ECS88_3611ECS88_3610
ECOL585034 ECIAI1_3376ECIAI1_3338ECIAI1_3377ECIAI1_3376
ECOL481805 ECOLC_0472ECOLC_0510ECOLC_0471ECOLC_3498
ECOL469008 ECBD_0513ECBD_0552ECBD_0512ECBD_0513
ECOL439855 ECSMS35_3530ECSMS35_3486ECSMS35_3531ECSMS35_0173
ECOL413997 ECB_03094ECB_03055ECB_03095ECB_03094
ECOL409438 ECSE_3513ECSE_3474ECSE_3514ECSE_3513
ECOL405955 APECO1_3210APECO1_3244APECO1_3209APECO1_1824
ECOL364106 UTI89_C3665UTI89_C3624UTI89_C3666UTI89_C3665
ECOL362663 ECP_3317ECP_3277ECP_3318ECP_0171
ECOL331111 ECE24377A_3717ECE24377A_3676ECE24377A_3718ECE24377A_0166
ECOL316407 ECK3223:JW3203:B3234ECK3179:JW3157:B3190ECK3224:JW3204:B3235ECK0160:JW0157:B0161
ECOL199310 C3989C3948C3990C3989
ECAR218491 ECA0303ECA0300ECA0302ECA3301
DPSY177439 DP0755DP0755DP0755
DOLE96561 DOLE_2815DOLE_2815DOLE_2815
DARO159087 DARO_3371DARO_3394DARO_3371
CTEP194439 CT_1447CT_1447CT_1447
CSAL290398 CSAL_2211CSAL_2215CSAL_2211CSAL_2211
CPSY167879 CPS_4346CPS_4531CPS_4347CPS_4346
CPRO264201 PC1291PC1291PC1291
CJAP155077 CJA_2585CJA_2797CJA_2792CJA_2585
CBUR434922 COXBU7E912_0769COXBU7E912_1481COXBU7E912_0769
CBUR360115 COXBURSA331_A1196COXBURSA331_A0696COXBURSA331_A1196
CBUR227377 CBU_0755CBU_0582CBU_0755
CBLO291272 BPEN_048BPEN_046BPEN_048BPEN_048
CBLO203907 BFL047BFL045BFL047BFL047
BVIE269482 BCEP1808_0418BCEP1808_0401BCEP1808_0418
BTHA271848 BTH_I2979BTH_I2996BTH_I2979BTH_I2979
BSUI470137 BSUIS_A0641BSUIS_A1255BSUIS_A1445
BSUI204722 BR_0611BR_1207BR_1394
BSP376 BRADO2695BRADO4635BRADO2695
BSP36773 BCEP18194_A3537BCEP18194_A3520BCEP18194_A3537BCEP18194_A3537
BSP107806 BU228BU385BU228BU228
BQUI283165 BQ03970BQ07970BQ03970
BPSE320373 BURPS668_3652BURPS668_3669BURPS668_3652BURPS668_3652
BPSE320372 BURPS1710B_A3977BURPS1710B_A3994BURPS1710B_A3977BURPS1710B_A3977
BPSE272560 BPSL3125BPSL3142BPSL3125BPSL3125
BPET94624 BPET0125BPET0141BPET0125
BPER257313 BP2434BP3765BP0280
BPAR257311 BPP3298BPP4264BPP4280
BOVI236 GBOORF0643GBOORF1218GBOORF1407
BMEL359391 BAB1_0635BAB1_1229BAB1_1413
BMEL224914 BMEI1330BMEI0783BMEI0613
BMAL320389 BMA10247_2750BMA10247_2768BMA10247_2750BMA10247_2750
BMAL320388 BMASAVP1_A3254BMASAVP1_A3236BMASAVP1_A3254BMASAVP1_A3254
BMAL243160 BMA_2700BMA_2717BMA_2700BMA_2700
BJAP224911 BLR5235BLR5235BLR5235
BHEN283166 BH04770BH10250BH04770
BCIC186490 BCI_0029BCI_0027BCI_0029BCI_0029
BCEN331272 BCEN2424_0439BCEN2424_0422BCEN2424_0439BCEN2424_0439
BCEN331271 BCEN_2668BCEN_2685BCEN_2668BCEN_2668
BCAN483179 BCAN_A0627BCAN_A1229BCAN_A1426
BBRO257310 BB3749BB4851BB4867
BBAC360095 BARBAKC583_0434BARBAKC583_0724BARBAKC583_0724
BAPH198804 BUSG222BUSG372BUSG222
BAMB398577 BAMMC406_0366BAMMC406_0349BAMMC406_0366BAMMC406_0366
BAMB339670 BAMB_0357BAMB_0340BAMB_0357BAMB_0357
BABO262698 BRUAB1_0630BRUAB1_1212BRUAB1_1389
ASP76114 EBA2969EBA1303EBA1283
ASP62977 ACIAD2586ACIAD0659ACIAD1348
ASP62928 AZO3337AZO0814AZO3337
ASP232721 AJS_0784AJS_0757AJS_0784AJS_0784
ASAL382245 ASA_0330ASA_0304ASA_0329ASA_0330
APLE434271 APJL_1306APJL_1300APJL_0744APJL_1306
APLE416269 APL_1293APL_1287APL_0742APL_1293
AHYD196024 AHA_3908AHA_3934AHA_3909AHA_3908
AEHR187272 MLG_2213MLG_2218MLG_2213MLG_1343
ACAU438753 AZC_1136AZC_2528AZC_1136
ABUT367737 ABU_2099ABU_2099ABU_2099
ABOR393595 ABO_0815ABO_0559ABO_0565ABO_0815
ABAU360910 BAV3326BAV3311BAV3326BAV3326


Organism features enriched in list (features available for 207 out of the 221 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 6.892e-61592
Arrangment:Singles 0.0030331116286
Disease:Brucellosis 0.005468255
Disease:Bubonic_plague 0.001911066
Disease:Dysentery 0.001911066
Disease:Gastroenteritis 0.00222381013
Endospores:No 5.526e-1238211
Endospores:Yes 6.632e-10153
GC_Content_Range4:0-40 5.968e-2027213
GC_Content_Range4:40-60 8.826e-8109224
GC_Content_Range4:60-100 0.000046571145
GC_Content_Range7:0-30 0.0000513547
GC_Content_Range7:30-40 7.660e-1422166
GC_Content_Range7:50-60 1.603e-1067107
GC_Content_Range7:60-70 1.073e-671134
Genome_Size_Range5:0-2 3.049e-1616155
Genome_Size_Range5:2-4 0.000559253197
Genome_Size_Range5:4-6 3.072e-17111184
Genome_Size_Range5:6-10 0.00074522747
Genome_Size_Range9:1-2 4.483e-1412128
Genome_Size_Range9:2-3 0.000049925120
Genome_Size_Range9:4-5 0.00002065296
Genome_Size_Range9:5-6 4.599e-115988
Genome_Size_Range9:6-8 0.00022522438
Gram_Stain:Gram_Neg 8.017e-42191333
Habitat:Specialized 0.0011559953
Motility:No 2.049e-1516151
Motility:Yes 5.456e-11132267
Optimal_temp.:25-30 0.00001221619
Oxygen_Req:Anaerobic 1.445e-813102
Oxygen_Req:Facultative 1.599e-697201
Pathogenic_in:Animal 0.00393483366
Pathogenic_in:No 0.004418167226
Pathogenic_in:Plant 0.00240471115
Shape:Coccobacillus 9.487e-61111
Shape:Coccus 2.503e-10682
Shape:Rod 4.919e-13163347
Shape:Sphere 0.0022368119
Temp._range:Mesophilic 0.0001194184473
Temp._range:Thermophilic 0.0000258235



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 354
Effective number of orgs (counting one per cluster within 468 clusters): 278

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM40
WPIP955 Wolbachia pipientis0
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTHE300852 ncbi Thermus thermophilus HB80
TTHE262724 ncbi Thermus thermophilus HB270
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB40
TSP28240 Thermotoga sp.0
TSP1755 Thermoanaerobacter sp.0
TROS309801 ncbi Thermomicrobium roseum DSM 51590
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332230
TPET390874 ncbi Thermotoga petrophila RKU-10
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TMAR243274 ncbi Thermotoga maritima MSB80
TLET416591 ncbi Thermotoga lettingae TMO0
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TFUS269800 ncbi Thermobifida fusca YX0
TERY203124 ncbi Trichodesmium erythraeum IMS1011
TELO197221 ncbi Thermosynechococcus elongatus BP-11
TDEN243275 ncbi Treponema denticola ATCC 354050
TCRU317025 ncbi Thiomicrospira crunogena XCL-21
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen0
STRO369723 ncbi Salinispora tropica CNB-4400
STOK273063 ncbi Sulfolobus tokodaii 70
STHE322159 ncbi Streptococcus thermophilus LMD-90
STHE299768 ncbi Streptococcus thermophilus CNRZ10660
STHE292459 ncbi Symbiobacterium thermophilum IAM 148630
STHE264199 ncbi Streptococcus thermophilus LMG 183110
SSUI391296 ncbi Streptococcus suis 98HAH330
SSUI391295 ncbi Streptococcus suis 05ZYH330
SSP84588 ncbi Synechococcus sp. WH 81021
SSP64471 ncbi Synechococcus sp. CC93111
SSP387093 ncbi Sulfurovum sp. NBC37-10
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)1
SSP321327 ncbi Synechococcus sp. JA-3-3Ab1
SSP1148 ncbi Synechocystis sp. PCC 68031
SSP1131 Synechococcus sp. CC96051
SSOL273057 ncbi Sulfolobus solfataricus P20
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153050
SRUB309807 ncbi Salinibacter ruber DSM 138550
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370552 ncbi Streptococcus pyogenes MGAS102700
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103940
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SPNE488221 ncbi Streptococcus pneumoniae 705850
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-60
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-140
SPNE171101 ncbi Streptococcus pneumoniae R60
SPNE170187 ncbi Streptococcus pneumoniae G540
SPNE1313 Streptococcus pneumoniae0
SMUT210007 ncbi Streptococcus mutans UA1590
SMAR399550 ncbi Staphylothermus marinus F10
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14350
SGOR29390 Streptococcus gordonii Challis0
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23380
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122280
SEPI176279 ncbi Staphylococcus epidermidis RP62A0
SELO269084 ncbi Synechococcus elongatus PCC 63011
SCO ncbi Streptomyces coelicolor A3(2)0
SAVE227882 ncbi Streptomyces avermitilis MA-46800
SAUR93062 ncbi Staphylococcus aureus aureus COL0
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83250
SAUR426430 ncbi Staphylococcus aureus aureus Newman0
SAUR418127 ncbi Staphylococcus aureus aureus Mu30
SAUR367830 Staphylococcus aureus aureus USA3000
SAUR359787 ncbi Staphylococcus aureus aureus JH10
SAUR359786 ncbi Staphylococcus aureus aureus JH90
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4760
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2520
SAUR273036 ncbi Staphylococcus aureus RF1220
SAUR196620 ncbi Staphylococcus aureus aureus MW20
SAUR158879 ncbi Staphylococcus aureus aureus N3150
SAUR158878 ncbi Staphylococcus aureus aureus Mu500
SARE391037 ncbi Salinispora arenicola CNS-2050
SALA317655 ncbi Sphingopyxis alaskensis RB22560
SAGA211110 ncbi Streptococcus agalactiae NEM3160
SAGA208435 ncbi Streptococcus agalactiae 2603V/R0
SAGA205921 ncbi Streptococcus agalactiae A9090
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99410
RTYP257363 ncbi Rickettsia typhi Wilmington1
RSP357808 ncbi Roseiflexus sp. RS-10
RSP101510 ncbi Rhodococcus jostii RHA10
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332090
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E1
RMAS416276 ncbi Rickettsia massiliae MTU50
RFEL315456 ncbi Rickettsia felis URRWXCal20
RDEN375451 ncbi Roseobacter denitrificans OCh 1141
RCON272944 ncbi Rickettsia conorii Malish 70
RCAS383372 ncbi Roseiflexus castenholzii DSM 139410
RCAN293613 ncbi Rickettsia canadensis McKiel1
RBEL391896 ncbi Rickettsia bellii OSU 85-3891
RBEL336407 ncbi Rickettsia bellii RML369-C1
RALB246199 Ruminococcus albus 80
RAKA293614 ncbi Rickettsia akari Hartford1
PTOR263820 ncbi Picrophilus torridus DSM 97900
PTHE370438 ncbi Pelotomaculum thermopropionicum SI0
PRUM264731 ncbi Prevotella ruminicola 230
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257450
PMOB403833 ncbi Petrotoga mobilis SJ951
PMAR93060 ncbi Prochlorococcus marinus MIT 92151
PMAR74547 ncbi Prochlorococcus marinus MIT 93131
PMAR74546 ncbi Prochlorococcus marinus MIT 93121
PMAR59920 ncbi Prochlorococcus marinus NATL2A0
PMAR167555 ncbi Prochlorococcus marinus NATL1A0
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95151
PMAR167540 Prochlorococcus marinus pastoris MED4ax1
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13751
PMAR146891 ncbi Prochlorococcus marinus AS96011
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 171
PHOR70601 ncbi Pyrococcus horikoshii OT30
PGIN242619 ncbi Porphyromonas gingivalis W831
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PDIS435591 ncbi Parabacteroides distasonis ATCC 85030
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PAER178306 ncbi Pyrobaculum aerophilum IM20
PACN267747 ncbi Propionibacterium acnes KPA1712020
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
OIHE221109 ncbi Oceanobacillus iheyensis HTE8310
NSP35761 Nocardioides sp.0
NSP103690 ncbi Nostoc sp. PCC 71201
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
NMEN374833 ncbi Neisseria meningitidis 0534421
NMEN272831 ncbi Neisseria meningitidis FAM181
NMEN122587 ncbi Neisseria meningitidis Z24911
NGON242231 ncbi Neisseria gonorrhoeae FA 10901
NFAR247156 ncbi Nocardia farcinica IFM 101520
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-10
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra0
MTUB336982 ncbi Mycobacterium tuberculosis F110
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE264732 ncbi Moorella thermoacetica ATCC 390730
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MTBRV ncbi Mycobacterium tuberculosis H37Rv0
MTBCDC ncbi Mycobacterium tuberculosis CDC15510
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSP189918 ncbi Mycobacterium sp. KMS0
MSP164757 ncbi Mycobacterium sp. JLS0
MSP164756 ncbi Mycobacterium sp. MCS0
MSME246196 ncbi Mycobacterium smegmatis MC2 1550
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK0
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P20
MBOV233413 ncbi Mycobacterium bovis AF2122/970
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MAVI243243 ncbi Mycobacterium avium 1040
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAER449447 ncbi Microcystis aeruginosa NIES-8431
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
MABS561007 ncbi Mycobacterium abscessus ATCC 199770
LXYL281090 ncbi Leifsonia xyli xyli CTCB070
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53340
LSPH444177 ncbi Lysinibacillus sphaericus C3-410
LSAK314315 ncbi Lactobacillus sakei sakei 23K0
LREU557436 ncbi Lactobacillus reuteri DSM 200160
LPLA220668 ncbi Lactobacillus plantarum WCFS10
LMON265669 ncbi Listeria monocytogenes 4b F23650
LMON169963 ncbi Listeria monocytogenes EGD-e0
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82930
LLAC272623 ncbi Lactococcus lactis lactis Il14030
LLAC272622 ncbi Lactococcus lactis cremoris SK110
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1300
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566010
LINN272626 ncbi Listeria innocua Clip112620
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LCAS321967 ncbi Lactobacillus casei ATCC 3340
LBRE387344 ncbi Lactobacillus brevis ATCC 3670
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1971
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5501
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)0
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)0
LACI272621 ncbi Lactobacillus acidophilus NCFM0
KRAD266940 ncbi Kineococcus radiotolerans SRS302160
JSP290400 ncbi Jannaschia sp. CCS11
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSAL478009 ncbi Halobacterium salinarum R10
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMOD498761 ncbi Heliobacterium modesticaldum Ice11
HMAR272569 ncbi Haloarcula marismortui ATCC 430490
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237790
GVIO251221 ncbi Gloeobacter violaceus PCC 74211
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-20
GKAU235909 ncbi Geobacillus kaustophilus HTA4260
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-001
FTUL418136 ncbi Francisella tularensis tularensis WY96-34181
FTUL401614 ncbi Francisella novicida U1121
FTUL393115 ncbi Francisella tularensis tularensis FSC1981
FTUL393011 ncbi Francisella tularensis holarctica OSU181
FTUL351581 Francisella tularensis holarctica FSC2001
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S850
FSP1855 Frankia sp. EAN1pec0
FSP106370 ncbi Frankia sp. CcI30
FRANT ncbi Francisella tularensis tularensis SCHU S41
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250171
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255860
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B10
FMAG334413 ncbi Finegoldia magna ATCC 293280
FJOH376686 ncbi Flavobacterium johnsoniae UW1011
FALN326424 ncbi Frankia alni ACN14a0
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ELIT314225 ncbi Erythrobacter litoralis HTCC25940
EFAE226185 ncbi Enterococcus faecalis V5830
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DSP255470 ncbi Dehalococcoides sp. CBDB10
DSP216389 ncbi Dehalococcoides sp. BAV10
DRED349161 ncbi Desulfotomaculum reducens MI-11
DRAD243230 ncbi Deinococcus radiodurans R10
DHAF138119 ncbi Desulfitobacterium hafniense Y511
DGEO319795 ncbi Deinococcus geothermalis DSM 113000
DETH243164 ncbi Dehalococcoides ethenogenes 1950
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G200
CVIO243365 ncbi Chromobacterium violaceum ATCC 124721
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA0
CTET212717 ncbi Clostridium tetani E880
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CSP78 Caulobacter sp.1
CSP501479 Citreicella sp. SE451
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)1
CPHY357809 ncbi Clostridium phytofermentans ISDg0
CPER289380 ncbi Clostridium perfringens SM1010
CPER195103 ncbi Clostridium perfringens ATCC 131240
CPER195102 ncbi Clostridium perfringens 130
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10621
CNOV386415 ncbi Clostridium novyi NT0
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3820
CMIC31964 ncbi Clavibacter michiganensis sepedonicus0
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CKLU431943 ncbi Clostridium kluyveri DSM 5550
CJEI306537 ncbi Corynebacterium jeikeium K4110
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29011
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334060
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3811
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130320
CFET360106 ncbi Campylobacter fetus fetus 82-400
CEFF196164 ncbi Corynebacterium efficiens YS-3140
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131290
CDIF272563 ncbi Clostridium difficile 6300
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C0
CCUR360105 ncbi Campylobacter curvus 525.921
CCON360104 ncbi Campylobacter concisus 138261
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto0
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6570
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B0
CBOT498213 ncbi Clostridium botulinum B1 str. Okra0
CBOT441772 ncbi Clostridium botulinum F str. Langeland0
CBOT441771 ncbi Clostridium botulinum A str. Hall0
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193970
CBOT36826 Clostridium botulinum A0
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80520
CACE272562 ncbi Clostridium acetobutylicum ATCC 8240
BXEN266265 ncbi Burkholderia xenovorans LB4000
BWEI315730 ncbi Bacillus weihenstephanensis KBAB40
BTUR314724 ncbi Borrelia turicatae 91E1350
BTHU412694 ncbi Bacillus thuringiensis Al Hakam0
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-270
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54821
BSUB ncbi Bacillus subtilis subtilis 1680
BPUM315750 ncbi Bacillus pumilus SAFR-0320
BLON206672 ncbi Bifidobacterium longum NCC27050
BLIC279010 ncbi Bacillus licheniformis ATCC 145800
BHER314723 ncbi Borrelia hermsii DAH0
BHAL272558 ncbi Bacillus halodurans C-1250
BGAR290434 ncbi Borrelia garinii PBi0
BFRA295405 ncbi Bacteroides fragilis YCH461
BFRA272559 ncbi Bacteroides fragilis NCTC 93431
BCLA66692 ncbi Bacillus clausii KSM-K160
BCER572264 ncbi Bacillus cereus 03BB1020
BCER405917 Bacillus cereus W0
BCER315749 ncbi Bacillus cytotoxicus NVH 391-980
BCER288681 ncbi Bacillus cereus E33L0
BCER226900 ncbi Bacillus cereus ATCC 145790
BBUR224326 ncbi Borrelia burgdorferi B310
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1001
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)1
BANT592021 ncbi Bacillus anthracis A02480
BANT568206 ncbi Bacillus anthracis CDC 6840
BANT261594 ncbi Bacillus anthracis Ames Ancestor0
BANT260799 ncbi Bacillus anthracis Sterne0
BAMY326423 ncbi Bacillus amyloliquefaciens FZB420
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AVAR240292 ncbi Anabaena variabilis ATCC 294131
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP1667 Arthrobacter sp.0
APHA212042 ncbi Anaplasma phagocytophilum HZ1
APER272557 ncbi Aeropyrum pernix K10
AORE350688 ncbi Alkaliphilus oremlandii OhILAs0
ANAE240017 Actinomyces oris MG10
AMET293826 ncbi Alkaliphilus metalliredigens QYMF0
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232701
ACEL351607 ncbi Acidothermus cellulolyticus 11B0
AAVE397945 ncbi Acidovorax citrulli AAC00-11
AAUR290340 ncbi Arthrobacter aurescens TC10
AAEO224324 ncbi Aquifex aeolicus VF50


Names of the homologs of the genes in the group in each of these orgs
  G7682   G7657   EG11652   EG10463   
ZMOB264203
WPIP955
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496
TWHI203267
TVOL273116
TTHE300852
TTHE262724
TTEN273068
TSP28240
TSP1755
TROS309801
TPSE340099
TPET390874
TPEN368408
TPAL243276
TMAR243274
TLET416591
TKOD69014
TFUS269800
TERY203124 TERY_0678
TELO197221 TSL0875
TDEN243275
TCRU317025 TCR_0548
TACI273075
SWOL335541
STRO369723
STOK273063
STHE322159
STHE299768
STHE292459
STHE264199
SSUI391296
SSUI391295
SSP84588 SYNW0907OR1816
SSP64471 GSYN1245
SSP387093
SSP321332 CYB_2713
SSP321327 CYA_0979
SSP1148 SSR3122
SSP1131 SYNCC9605_1660
SSOL273057
SSAP342451
SRUB309807
SPYO370554
SPYO370553
SPYO370552
SPYO370551
SPYO319701
SPYO293653
SPYO286636
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SPNE488221
SPNE487214
SPNE487213
SPNE171101
SPNE170187
SPNE1313
SMUT210007
SMAR399550
SHAE279808
SGOR29390
SERY405948
SEPI176280
SEPI176279
SELO269084 SYC0404_D
SCO
SAVE227882
SAUR93062
SAUR93061
SAUR426430
SAUR418127
SAUR367830
SAUR359787
SAUR359786
SAUR282459
SAUR282458
SAUR273036
SAUR196620
SAUR158879
SAUR158878
SARE391037
SALA317655
SAGA211110
SAGA208435
SAGA205921
SACI330779
RXYL266117
RTYP257363 RT0113
RSP357808
RSP101510
RSAL288705
RRIC452659
RRIC392021
RPRO272947 RP124
RMAS416276
RFEL315456
RDEN375451 RD1_1923
RCON272944
RCAS383372
RCAN293613 A1E_00630
RBEL391896 A1I_01430
RBEL336407 RBE_1170
RALB246199
RAKA293614 A1C_00920
PTOR263820
PTHE370438
PRUM264731
PPEN278197
PMOB403833 PMOB_0031
PMAR93060 P9215_12461
PMAR74547 PMT1094
PMAR74546 PMT9312_1121
PMAR59920
PMAR167555
PMAR167546
PMAR167542 P9515ORF_1255
PMAR167540 PMM1110
PMAR167539 PRO_1086
PMAR146891 A9601_12161
PISL384616
PINT246198 PIN_A2138
PHOR70601
PGIN242619 PG_0593
PFUR186497
PDIS435591
PAST100379
PARS340102
PAER178306
PACN267747
PABY272844
OTSU357244
OIHE221109
NSP35761
NSP103690 ASR0798
NSEN222891
NPHA348780
NMEN374833 NMCC_0009
NMEN272831 NMC2147
NMEN122587 NMA0256
NGON242231 NGO1920
NFAR247156
MVAN350058
MTUB419947
MTUB336982
MTHE349307
MTHE264732
MTHE187420
MTBRV
MTBCDC
MSYN262723
MSTA339860
MSP189918
MSP164757
MSP164756
MSME246196
MSED399549
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR368407
MMAR267377
MLEP272631
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGIL350054
MGEN243273
MFLO265311
MCAP340047
MBUR259564
MBOV410289
MBOV233413
MBAR269797
MAVI243243
MART243272
MAER449447 MAE_46690
MAEO419665
MACE188937
MABS561007
LXYL281090
LWEL386043
LSPH444177
LSAK314315
LREU557436
LPLA220668
LMON265669
LMON169963
LMES203120
LLAC272623
LLAC272622
LJOH257314
LINT267671
LINT189518
LINN272626
LHEL405566
LGAS324831
LDEL390333
LDEL321956
LCAS321967
LBRE387344
LBOR355277 LBJ_0760
LBOR355276 LBL_2318
LBIF456481
LBIF355278
LACI272621
KRAD266940
JSP290400 JANN_3170
IHOS453591
HWAL362976
HSP64091
HSAL478009
HMUK485914
HMOD498761 HM1_0990
HMAR272569
HBUT415426
HAUR316274
GVIO251221 GSR4417
GTHE420246
GKAU235909
FTUL458234 FTA_0541
FTUL418136 FTW_0321
FTUL401614 FTN_0323
FTUL393115 FTF1613
FTUL393011 FTH_0509
FTUL351581 FTL_0512
FSUC59374
FSP1855
FSP106370
FRANT FT.1615
FPHI484022 FPHI_0502
FNUC190304
FNOD381764
FMAG334413
FJOH376686 FJOH_0019
FALN326424
ERUM302409
ERUM254945
ELIT314225
EFAE226185
ECHA205920
ECAN269484
DSP255470
DSP216389
DRED349161 DRED_0758
DRAD243230
DHAF138119 DSY4253
DGEO319795
DETH243164
DDES207559
CVIO243365 CV_0439
CVES412965
CTET212717
CSUL444179
CSP78 CAUL_3889
CSP501479 CSE45_1030
CRUT413404 RMAG_0126
CPHY357809
CPER289380
CPER195103
CPER195102
CPEL335992 SAR11_0005
CNOV386415
CMIC443906
CMIC31964
CMET456442
CMAQ397948
CKOR374847
CKLU431943
CJEI306537
CHYD246194 CHY_0057
CHUT269798
CHOM360107 CHAB381_0977
CGLU196627
CFET360106
CEFF196164
CDIP257309
CDIF272563
CDES477974
CCUR360105 CCV52592_0806
CCON360104 CCC13826_1064
CBOT536232
CBOT515621
CBOT508765
CBOT498213
CBOT441772
CBOT441771
CBOT441770
CBOT36826
CBEI290402
CACE272562
BXEN266265
BWEI315730
BTUR314724
BTHU412694
BTHU281309
BTHE226186 BT_1312
BSUB
BPUM315750
BLON206672
BLIC279010
BHER314723
BHAL272558
BGAR290434
BFRA295405 BF2744
BFRA272559 BF2761
BCLA66692
BCER572264
BCER405917
BCER315749
BCER288681
BCER226900
BBUR224326
BBAC264462 BD1328
BAPH372461 BCC_238
BANT592021
BANT568206
BANT261594
BANT260799
BAMY326423
BAFZ390236
AYEL322098
AVAR240292 AVA_0590
AURANTIMONAS
ASP1667
APHA212042 APH_1148
APER272557
AORE350688
ANAE240017
AMET293826
AMAR234826
ALAI441768
AFUL224325
AFER243159 AFE_0073
ACEL351607
AAVE397945 AAVE_1021
AAUR290340
AAEO224324


Organism features enriched in list (features available for 331 out of the 354 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00004356992
Arrangment:Clusters 0.00005511717
Arrangment:Filaments 0.00327861010
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 0.00183671111
Disease:Wide_range_of_infections 0.00183671111
Endospores:No 7.056e-16165211
Endospores:Yes 1.461e-115153
GC_Content_Range4:0-40 2.241e-21174213
GC_Content_Range4:40-60 1.018e-797224
GC_Content_Range4:60-100 3.211e-659145
GC_Content_Range7:0-30 4.670e-74247
GC_Content_Range7:30-40 4.759e-13132166
GC_Content_Range7:50-60 1.826e-835107
GC_Content_Range7:60-70 4.559e-849134
Genome_Size_Range5:0-2 1.011e-10121155
Genome_Size_Range5:2-4 0.0000606133197
Genome_Size_Range5:4-6 3.551e-1561184
Genome_Size_Range5:6-10 0.00060681647
Genome_Size_Range9:1-2 9.085e-9100128
Genome_Size_Range9:2-3 5.500e-689120
Genome_Size_Range9:4-5 7.883e-73396
Genome_Size_Range9:5-6 1.979e-72888
Genome_Size_Range9:6-8 0.00023771138
Gram_Stain:Gram_Neg 1.206e-5899333
Gram_Stain:Gram_Pos 5.060e-46150150
Habitat:Multiple 0.006660389178
Habitat:Specialized 0.00021504253
Motility:No 7.986e-19130151
Motility:Yes 3.990e-10115267
Optimal_temp.:25-30 2.162e-6119
Optimal_temp.:30-37 0.00003061818
Oxygen_Req:Anaerobic 1.756e-984102
Oxygen_Req:Facultative 0.000771497201
Pathogenic_in:Animal 0.00242992766
Salinity:Non-halophilic 0.008935670106
Shape:Coccus 1.429e-127482
Shape:Irregular_coccus 0.00005511717
Shape:Rod 1.424e-17148347
Shape:Sphere 0.00186511719
Temp._range:Hyperthermophilic 1.573e-62323
Temp._range:Mesophilic 0.0000261250473
Temp._range:Thermophilic 4.274e-63235



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181780.7081
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3002100.6955
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951620.6716
GLYCOCAT-PWY (glycogen degradation I)2461850.6708
PWY-1269 (CMP-KDO biosynthesis I)3252140.6630
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251710.6369
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2911960.6239
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2901950.6196
NAGLIPASYN-PWY (lipid IVA biosynthesis)3482150.6186
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2961970.6181
PWY-5918 (heme biosynthesis I)2721840.5920
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)1761410.5855
ECASYN-PWY (enterobacterial common antigen biosynthesis)1911480.5839
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2861880.5827
PWY-5913 (TCA cycle variation IV)3011920.5722
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)1491240.5595
TYRFUMCAT-PWY (tyrosine degradation I)1841370.5275
PWY-5148 (acyl-CoA hydrolysis)2271560.5262
GDPRHAMSYN-PWY (GDP-D-rhamnose biosynthesis)1561230.5240
AST-PWY (arginine degradation II (AST pathway))1201040.5226
GLUTATHIONESYN-PWY (glutathione biosynthesis)3391970.5170
PWY-4041 (γ-glutamyl cycle)2791740.5062
PWY0-1329 (succinate to cytochrome bo oxidase electron transfer)96870.4920
REDCITCYC (TCA cycle variation II)1741270.4881
PWY-5857 (ubiquinone-10 biosynthesis (prokaryotic))1831310.4868
PWY-5028 (histidine degradation II)1301050.4862
PWY0-1335 (NADH to cytochrome bo oxidase electron transfer)112950.4829
PWY-5669 (phosphatidylethanolamine biosynthesis I)4162140.4732
PYRIDOXSYN-PWY (pyridoxal 5'-phosphate biosynthesis I)4222150.4686
PWY-5855 (ubiquinone-7 biosynthesis (prokaryotic))1911320.4675
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491560.4635
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491560.4635
DAPLYSINESYN-PWY (lysine biosynthesis I)3421900.4631
PWY0-845 (superpathway of pyridoxal 5'-phosphate biosynthesis and salvage)3291850.4590
P184-PWY (protocatechuate degradation I (meta-cleavage pathway))94820.4560
PWY-5856 (ubiquinone-9 biosynthesis (prokaryotic))2551560.4472
P344-PWY (acrylonitrile degradation)2101370.4436
PWY0-541 (cyclopropane fatty acid (CFA) biosynthesis)3001720.4403
UBISYN-PWY (ubiquinol-8 biosynthesis (prokaryotic))3982040.4387
PWY-46 (putrescine biosynthesis III)1381010.4205
SULFATE-CYS-PWY (superpathway of sulfate assimilation and cysteine biosynthesis)3651910.4190
GALACTITOLCAT-PWY (galactitol degradation)73660.4183
GLUCONSUPER-PWY (D-gluconate degradation)2291410.4159
PWY-5386 (methylglyoxal degradation I)3051700.4148
PWY-5340 (sulfate activation for sulfonation)3851960.4103
KDOSYN-PWY (KDO transfer to lipid IVA I)1801190.4082
PWY-5188 (tetrapyrrole biosynthesis I)4392110.4065
KDO-NAGLIPASYN-PWY (superpathway of KDO2-lipid A biosynthesis)1791180.4041
PWY-5755 (4-hydroxybenzoate biosynthesis II (bacteria and fungi))81690.4017
PWY0-862 (cis-dodecenoyl biosynthesis)3431810.4001



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G7657   EG11652   EG10463   
G76820.9992250.9998160.999886
G76570.999430.998604
EG116520.999646
EG10463



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PAIRWISE BLAST SCORES:

  G7682   G7657   EG11652   EG10463   
G76820.0f0--1.2e-119
G7657-0.0f0--
EG116525.7e-48-0.0f05.8e-46
EG104630--0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG11652 G7682 (centered at EG11652)
EG10463 (centered at EG10463)
G7657 (centered at G7657)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7682   G7657   EG11652   EG10463   
264/623208/623234/623259/623
AAVE397945:0:Tyes-0--
ABAC204669:0:Tyes--00
ABAU360910:0:Tyes1501515
ABOR393595:0:Tyes25906259
ABUT367737:0:Tyes0-00
ACAU438753:0:Tyes0-14080
ACRY349163:8:Tyes0--0
ADEH290397:0:Tyes0--0
AEHR187272:0:Tyes8638688630
AFER243159:0:Tyes-0--
AHYD196024:0:Tyes02610
AMAR329726:9:Tyes-8160-
APHA212042:0:Tyes---0
APLE416269:0:Tyes5575510557
APLE434271:0:Tno5745680574
ASAL382245:5:Tyes2502425
ASP232721:2:Tyes2702727
ASP62928:0:Tyes256802568-
ASP62977:0:Tyes18010657-
ASP76114:2:Tyes993160-
AVAR240292:3:Tyes-0--
BABO262698:1:Tno0-559735
BAMB339670:3:Tno1701717
BAMB398577:3:Tno1701717
BAPH198804:0:Tyes0151-0
BAPH372461:0:Tyes-0--
BBAC264462:0:Tyes-0--
BBAC360095:0:Tyes0-271271
BBRO257310:0:Tyes011171133-
BCAN483179:1:Tno0-590775
BCEN331271:2:Tno01700
BCEN331272:3:Tyes1701717
BCIC186490:0:Tyes2022
BFRA272559:1:Tyes--0-
BFRA295405:0:Tno--0-
BHEN283166:0:Tyes0-5120
BJAP224911:0:Fyes0-00
BMAL243160:1:Tno01700
BMAL320388:1:Tno1801818
BMAL320389:1:Tyes01800
BMEL224914:1:Tno736-1750
BMEL359391:1:Tno0-538708
BOVI236:1:Tyes0-513670
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