CANDIDATE ID: 1006

CANDIDATE ID: 1006

NUMBER OF GENES: 4
AVERAGE SCORE:    9.9945583e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    5.0000018e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- EG12295 (yibN) (b3611)
   Products of gene:
     - EG12295-MONOMER (predicted rhodanese-related sulfurtransferase)

- EG12294 (grxC) (b3610)
   Products of gene:
     - GRXC-MONOMER (reduced glutaredoxin 3)
     - OX-GLUTAREDOXIN-C (oxidized glutaredoxin 3)

- EG10937 (secB) (b3609)
   Products of gene:
     - SECB (SecB)
     - SEC-SECRETION-CPLX (Sec Protein Secretion Complex)

- EG10417 (grxA) (b0849)
   Products of gene:
     - RED-GLUTAREDOXIN (reduced glutaredoxin 1)
     - GLUTAREDOXIN-MONOMER (oxidized glutaredoxin 1)



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ORGANISMS CONTAINING AT LEAST 3 GENES FROM THE GROUP:

Total number of orgs: 226
Effective number of orgs (counting one per cluster within 468 clusters): 147

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317584
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329534
YPES386656 ncbi Yersinia pestis Pestoides F4
YPES377628 ncbi Yersinia pestis Nepal5164
YPES360102 ncbi Yersinia pestis Antiqua4
YPES349746 ncbi Yersinia pestis Angola4
YPES214092 ncbi Yersinia pestis CO924
YPES187410 ncbi Yersinia pestis KIM 104
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80814
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A3
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110183
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103313
XFAS183190 ncbi Xylella fastidiosa Temecula13
XFAS160492 ncbi Xylella fastidiosa 9a5c3
XCAM487884 Xanthomonas campestris pv. paulliniae3
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-103
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80043
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339133
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3063
XAUT78245 ncbi Xanthobacter autotrophicus Py23
WPIP955 Wolbachia pipientis3
VVUL216895 ncbi Vibrio vulnificus CMCP64
VVUL196600 ncbi Vibrio vulnificus YJ0164
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106334
VFIS312309 ncbi Vibrio fischeri ES1144
VEIS391735 ncbi Verminephrobacter eiseniae EF01-24
VCHO345073 ncbi Vibrio cholerae O3954
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169614
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252593
TCRU317025 ncbi Thiomicrospira crunogena XCL-24
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT24
SSP94122 ncbi Shewanella sp. ANA-34
SSON300269 ncbi Shigella sonnei Ss0464
SSED425104 ncbi Shewanella sediminis HAW-EB33
SPRO399741 ncbi Serratia proteamaculans 5684
SPEA398579 ncbi Shewanella pealeana ATCC 7003453
SONE211586 ncbi Shewanella oneidensis MR-13
SLOI323850 ncbi Shewanella loihica PV-43
SHIGELLA ncbi Shigella flexneri 2a str. 2457T4
SHAL458817 ncbi Shewanella halifaxensis HAW-EB43
SGLO343509 ncbi Sodalis glossinidius morsitans4
SFLE373384 ncbi Shigella flexneri 5 str. 84014
SFLE198214 ncbi Shigella flexneri 2a str. 3014
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4764
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B674
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91504
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT184
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty24
SELO269084 ncbi Synechococcus elongatus PCC 63013
SDYS300267 ncbi Shigella dysenteriae Sd1974
SDEN318161 ncbi Shewanella denitrificans OS2173
SDEG203122 ncbi Saccharophagus degradans 2-403
SBOY300268 ncbi Shigella boydii Sb2274
SBAL402882 ncbi Shewanella baltica OS1853
SBAL399599 ncbi Shewanella baltica OS1953
SALA317655 ncbi Sphingopyxis alaskensis RB22563
RTYP257363 ncbi Rickettsia typhi Wilmington3
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170253
RSOL267608 ncbi Ralstonia solanacearum GMI10004
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111703
RRIC452659 ncbi Rickettsia rickettsii Iowa3
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith3
RPRO272947 ncbi Rickettsia prowazekii Madrid E3
RPAL316057 ncbi Rhodopseudomonas palustris BisB53
RPAL258594 ncbi Rhodopseudomonas palustris CGA0094
RMET266264 ncbi Ralstonia metallidurans CH343
RMAS416276 ncbi Rickettsia massiliae MTU53
RFER338969 ncbi Rhodoferax ferrireducens T1184
RFEL315456 ncbi Rickettsia felis URRWXCal23
REUT381666 ncbi Ralstonia eutropha H164
REUT264198 ncbi Ralstonia eutropha JMP1344
RCON272944 ncbi Rickettsia conorii Malish 73
RCAN293613 ncbi Rickettsia canadensis McKiel3
RBEL391896 ncbi Rickettsia bellii OSU 85-3893
RBEL336407 ncbi Rickettsia bellii RML369-C3
RAKA293614 ncbi Rickettsia akari Hartford3
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30004
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a4
PSTU379731 ncbi Pseudomonas stutzeri A15013
PSP56811 Psychrobacter sp.3
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-14
PSP296591 ncbi Polaromonas sp. JS6663
PPUT76869 ncbi Pseudomonas putida GB-14
PPUT351746 ncbi Pseudomonas putida F14
PPUT160488 ncbi Pseudomonas putida KT24404
PPRO298386 ncbi Photobacterium profundum SS94
PNAP365044 ncbi Polaromonas naphthalenivorans CJ24
PMUL272843 ncbi Pasteurella multocida multocida Pm704
PMEN399739 ncbi Pseudomonas mendocina ymp4
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO13
PING357804 ncbi Psychromonas ingrahamii 373
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1254
PFLU220664 ncbi Pseudomonas fluorescens Pf-54
PFLU216595 ncbi Pseudomonas fluorescens SBW254
PFLU205922 ncbi Pseudomonas fluorescens Pf0-14
PENT384676 ncbi Pseudomonas entomophila L484
PCRY335284 ncbi Psychrobacter cryohalolentis K53
PATL342610 ncbi Pseudoalteromonas atlantica T6c4
PARC259536 ncbi Psychrobacter arcticus 273-43
PAER208964 ncbi Pseudomonas aeruginosa PAO14
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA144
OANT439375 ncbi Ochrobactrum anthropi ATCC 491883
NOCE323261 ncbi Nitrosococcus oceani ATCC 197073
NMUL323848 ncbi Nitrosospira multiformis ATCC 251964
NMEN374833 ncbi Neisseria meningitidis 0534423
NMEN272831 ncbi Neisseria meningitidis FAM183
NMEN122587 ncbi Neisseria meningitidis Z24913
NMEN122586 ncbi Neisseria meningitidis MC583
NEUT335283 ncbi Nitrosomonas eutropha C914
NEUR228410 ncbi Nitrosomonas europaea ATCC 197184
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124443
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E4
MSP409 Methylobacterium sp.3
MSP400668 ncbi Marinomonas sp. MWYL14
MPET420662 ncbi Methylibium petroleiphilum PM13
MMAG342108 ncbi Magnetospirillum magneticum AMB-13
MFLA265072 ncbi Methylobacillus flagellatus KT3
MCAP243233 ncbi Methylococcus capsulatus Bath3
MAQU351348 ncbi Marinobacter aquaeolei VT83
LPNE400673 ncbi Legionella pneumophila Corby4
LPNE297246 ncbi Legionella pneumophila Paris4
LPNE297245 ncbi Legionella pneumophila Lens4
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 14
LCHO395495 ncbi Leptothrix cholodnii SP-63
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785784
JSP375286 ncbi Janthinobacterium sp. Marseille3
ILOI283942 ncbi Idiomarina loihiensis L2TR3
HSOM228400 ncbi Haemophilus somnus 23364
HSOM205914 ncbi Haemophilus somnus 129PT4
HINF71421 ncbi Haemophilus influenzae Rd KW204
HINF374930 ncbi Haemophilus influenzae PittEE4
HINF281310 ncbi Haemophilus influenzae 86-028NP4
HHAL349124 ncbi Halorhodospira halophila SL13
HDUC233412 ncbi Haemophilus ducreyi 35000HP4
HCHE349521 ncbi Hahella chejuensis KCTC 23964
HARS204773 ncbi Herminiimonas arsenicoxydans3
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-004
FTUL418136 ncbi Francisella tularensis tularensis WY96-34184
FTUL401614 ncbi Francisella novicida U1124
FTUL393115 ncbi Francisella tularensis tularensis FSC1984
FTUL393011 ncbi Francisella tularensis holarctica OSU184
FTUL351581 Francisella tularensis holarctica FSC2004
FRANT ncbi Francisella tularensis tularensis SCHU S44
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250174
ESP42895 Enterobacter sp.4
ERUM302409 ncbi Ehrlichia ruminantium Gardel3
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden3
ELIT314225 ncbi Erythrobacter litoralis HTCC25943
EFER585054 ncbi Escherichia fergusonii ATCC 354694
ECOO157 ncbi Escherichia coli O157:H7 EDL9334
ECOL83334 Escherichia coli O157:H74
ECOL585397 ncbi Escherichia coli ED1a4
ECOL585057 ncbi Escherichia coli IAI394
ECOL585056 ncbi Escherichia coli UMN0264
ECOL585055 ncbi Escherichia coli 559894
ECOL585035 ncbi Escherichia coli S884
ECOL585034 ncbi Escherichia coli IAI14
ECOL481805 ncbi Escherichia coli ATCC 87394
ECOL469008 ncbi Escherichia coli BL21(DE3)4
ECOL439855 ncbi Escherichia coli SMS-3-54
ECOL413997 ncbi Escherichia coli B str. REL6064
ECOL409438 ncbi Escherichia coli SE114
ECOL405955 ncbi Escherichia coli APEC O14
ECOL364106 ncbi Escherichia coli UTI894
ECOL362663 ncbi Escherichia coli 5364
ECOL331111 ncbi Escherichia coli E24377A4
ECOL316407 ncbi Escherichia coli K-12 substr. W31104
ECOL199310 ncbi Escherichia coli CFT0734
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas3
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10434
ECAN269484 ncbi Ehrlichia canis Jake3
DARO159087 ncbi Dechloromonas aromatica RCB3
CSAL290398 ncbi Chromohalobacter salexigens DSM 30434
CPSY167879 ncbi Colwellia psychrerythraea 34H3
CJAP155077 Cellvibrio japonicus3
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1113
CBUR360115 ncbi Coxiella burnetii RSA 3313
CBUR227377 ncbi Coxiella burnetii RSA 4933
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN4
CAULO ncbi Caulobacter crescentus CB153
BVIE269482 ncbi Burkholderia vietnamiensis G44
BTRI382640 ncbi Bartonella tribocorum CIP 1054763
BTHA271848 ncbi Burkholderia thailandensis E2643
BSUI470137 ncbi Brucella suis ATCC 234453
BSUI204722 ncbi Brucella suis 13303
BSP376 Bradyrhizobium sp.3
BSP36773 Burkholderia sp.4
BQUI283165 ncbi Bartonella quintana Toulouse3
BPSE320373 ncbi Burkholderia pseudomallei 6683
BPSE320372 ncbi Burkholderia pseudomallei 1710b3
BPSE272560 ncbi Burkholderia pseudomallei K962433
BPET94624 Bordetella petrii4
BPER257313 ncbi Bordetella pertussis Tohama I3
BPAR257311 ncbi Bordetella parapertussis 128223
BOVI236 Brucella ovis3
BMEL359391 ncbi Brucella melitensis biovar Abortus 23083
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M3
BMAL320389 ncbi Burkholderia mallei NCTC 102473
BMAL320388 ncbi Burkholderia mallei SAVP13
BMAL243160 ncbi Burkholderia mallei ATCC 233443
BHEN283166 ncbi Bartonella henselae Houston-13
BCEN331272 ncbi Burkholderia cenocepacia HI24244
BCEN331271 ncbi Burkholderia cenocepacia AU 10544
BCAN483179 ncbi Brucella canis ATCC 233653
BBRO257310 ncbi Bordetella bronchiseptica RB503
BBAC360095 ncbi Bartonella bacilliformis KC5833
BAMB398577 ncbi Burkholderia ambifaria MC40-64
BAMB339670 ncbi Burkholderia ambifaria AMMD4
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9413
ASP62977 ncbi Acinetobacter sp. ADP14
ASP62928 ncbi Azoarcus sp. BH723
ASP232721 ncbi Acidovorax sp. JS424
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4494
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL034
APLE416269 ncbi Actinobacillus pleuropneumoniae L204
APHA212042 ncbi Anaplasma phagocytophilum HZ3
AMET293826 ncbi Alkaliphilus metalliredigens QYMF3
AMAR234826 ncbi Anaplasma marginale St. Maries3
AHYD196024 Aeromonas hydrophila dhakensis4
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232703
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-13
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C3
ACAU438753 ncbi Azorhizobium caulinodans ORS 5713
ABOR393595 ncbi Alcanivorax borkumensis SK24
ABAU360910 ncbi Bordetella avium 197N4
AAVE397945 ncbi Acidovorax citrulli AAC00-14


Names of the homologs of the genes in the group in each of these orgs
  EG12295   EG12294   EG10937   EG10417   
YPSE349747 YPSIP31758_0076YPSIP31758_0077YPSIP31758_0078YPSIP31758_2648
YPSE273123 YPTB0061YPTB0062YPTB0063YPTB1358
YPES386656 YPDSF_3840YPDSF_3839YPDSF_3838YPDSF_2369
YPES377628 YPN_3785YPN_3784YPN_3783YPN_2652
YPES360102 YPA_3477YPA_3476YPA_3475YPA_0618
YPES349746 YPANGOLA_A0070YPANGOLA_A0071YPANGOLA_A0072YPANGOLA_A1560
YPES214092 YPO0065YPO0066YPO0067YPO1327
YPES187410 Y0076Y0075Y0074Y2855
YENT393305 YE0078YE0079YE0080YE1479
XORY360094 XOOORF_0611XOOORF_4338XOOORF_0610
XORY342109 XOO3965XOO3461XOO3966
XORY291331 XOO4196XOO3664XOO4197
XFAS183190 PD_1066PD_1972PD_1065
XFAS160492 XF1800XF2595XF1801
XCAM487884 XCC-B100_0223XCC-B100_3386XCC-B100_0224
XCAM316273 XCAORF_4325XCAORF_1162XCAORF_4324
XCAM314565 XC_0212XC_3270XC_0213
XCAM190485 XCC0202XCC0965XCC0203
XAXO190486 XAC0220XAC1044XAC0221
XAUT78245 XAUT_3089XAUT_1805XAUT_3089
WPIP955 WD_0758WD_0106WD_0758
VVUL216895 VV1_1280VV2_1045VV1_1278VV1_2827
VVUL196600 VV3084VVA1561VV3085VV1439
VPAR223926 VP2830VP2753VP2831VP1233
VFIS312309 VF2350VF1496VF2349VF0890
VEIS391735 VEIS_0039VEIS_0040VEIS_0041VEIS_0040
VCHO345073 VC0395_A2228VC0395_A2214VC0395_A2227VC0395_A0716
VCHO VC2654VC2637VC2653VC1146
TDEN292415 TBD_2399TBD_2400TBD_2402
TCRU317025 TCR_1955TCR_0139TCR_1953TCR_0139
STYP99287 STM3703STM3702STM3701STM0872
SSP94122 SHEWANA3_0052SHEWANA3_4334SHEWANA3_0053SHEWANA3_2525
SSON300269 SSO_3794SSO_3795SSO_3796SSO_0834
SSED425104 SSED_4469SSED_4468SSED_1861
SPRO399741 SPRO_4818SPRO_4817SPRO_4816SPRO_1641
SPEA398579 SPEA_4216SPEA_4215SPEA_2560
SONE211586 SO_0050SO_0052SO_2745
SLOI323850 SHEW_3805SHEW_3804SHEW_1531
SHIGELLA YIBNGRXCSECBGRXA
SHAL458817 SHAL_0044SHAL_0045SHAL_1695
SGLO343509 SG2187SG2186SG2185SG0923
SFLE373384 SFV_3920SFV_3921SFV_3922SFV_0834
SFLE198214 AAN45097.1AAN45096.1AAN45095.1AAN42435.1
SENT454169 SEHA_C4028SEHA_C4027SEHA_C4026SEHA_C1006
SENT321314 SCH_3626SCH_3625SCH_3624SCH_0866
SENT295319 SPA3555SPA3554SPA3553SPA1890
SENT220341 STY4092STY4093STY4094STY0905
SENT209261 T3816T3817T3818T2024
SELO269084 SYC0606_DSYC1779_CSYC1779_C
SDYS300267 SDY_4044SDY_4043SDY_4042SDY_0746
SDEN318161 SDEN_3697SDEN_3696SDEN_2090
SDEG203122 SDE_0495SDE_0496SDE_0497
SBOY300268 SBO_3617SBO_3616SBO_3615SBO_0783
SBAL402882 SHEW185_0044SHEW185_0045SHEW185_1746
SBAL399599 SBAL195_0048SBAL195_0049SBAL195_1789
SALA317655 SALA_1790SALA_2015SALA_1790
RTYP257363 RT0194RT0062RT0194
RSPH349102 RSPH17025_0744RSPH17025_2632RSPH17025_2674
RSOL267608 RSC0354RSC0355RSC0356RSC0355
RRUB269796 RRU_A0738RRU_A3610RRU_A0738
RRIC452659 RRIOWA_0323RRIOWA_0130RRIOWA_0323
RRIC392021 A1G_01525A1G_00615A1G_01525
RPRO272947 RP204RP070RP204
RPAL316057 RPD_0106RPD_0422RPD_0106
RPAL258594 RPA0998RPA0598RPA0302RPA0598
RMET266264 RMET_0252RMET_0254RMET_0252
RMAS416276 RMA_0274RMA_0108RMA_0274
RFER338969 RFER_1310RFER_1311RFER_1312RFER_1311
RFEL315456 RF_1059RF_0055RF_1059
REUT381666 H16_A0333H16_A0334H16_A0335H16_A0334
REUT264198 REUT_A0305REUT_A0306REUT_A0307REUT_A0306
RCON272944 RC0267RC0100RC0267
RCAN293613 A1E_01060A1E_00335A1E_01060
RBEL391896 A1I_01860A1I_00385A1I_01860
RBEL336407 RBE_1093RBE_1296RBE_1093
RAKA293614 A1C_01495A1C_00545A1C_01495
PSYR223283 PSPTO_5326PSPTO_5325PSPTO_5324PSPTO_5325
PSYR205918 PSYR_4884PSYR_4883PSYR_4882PSYR_4883
PSTU379731 PST_4079PST_4078PST_4077
PSP56811 PSYCPRWF_0809PSYCPRWF_0808PSYCPRWF_0807
PSP312153 PNUC_1947PNUC_1946PNUC_1945PNUC_1946
PSP296591 BPRO_0887BPRO_0888BPRO_0889
PPUT76869 PPUTGB1_5106PPUTGB1_5105PPUTGB1_5104PPUTGB1_5105
PPUT351746 PPUT_4928PPUT_4927PPUT_4926PPUT_4927
PPUT160488 PP_5055PP_5054PP_5053PP_5054
PPRO298386 PBPRA0225PBPRA0272PBPRA0226PBPRA2419
PNAP365044 PNAP_0928PNAP_0929PNAP_0930PNAP_0929
PMUL272843 PM1433PM1347PM1432PM0827
PMEN399739 PMEN_4245PMEN_4244PMEN_4243PMEN_4244
PLUM243265 PLU4840PLU4839PLU1581
PING357804 PING_3210PING_3209PING_3208
PHAL326442 PSHAA0367PSHAA0368PSHAA0369PSHAA0991
PFLU220664 PFL_0372PFL_0373PFL_0374PFL_0373
PFLU216595 PFLU0338PFLU0339PFLU0340PFLU0339
PFLU205922 PFL_0334PFL_0335PFL_0336PFL_0335
PENT384676 PSEEN0381PSEEN0382PSEEN0383PSEEN0382
PCRY335284 PCRYO_1736PCRYO_1737PCRYO_1738
PATL342610 PATL_3612PATL_3613PATL_3614PATL_3613
PARC259536 PSYC_1554PSYC_1555PSYC_1556
PAER208964 PA5130PA5129PA5128PA5129
PAER208963 PA14_67750PA14_67740PA14_67720PA14_67740
OANT439375 OANT_1029OANT_0848OANT_1029
NOCE323261 NOC_0032NOC_0033NOC_0034
NMUL323848 NMUL_A1122NMUL_A1123NMUL_A1124NMUL_A1123
NMEN374833 NMCC_0436NMCC_0437NMCC_0436
NMEN272831 NMC0431NMC0432NMC0431
NMEN122587 NMA0673NMA0674NMA0673
NMEN122586 NMB_1790NMB_1789NMB_1790
NEUT335283 NEUT_0656NEUT_0657NEUT_0658NEUT_0657
NEUR228410 NE2212NE2211NE2210NE2211
NARO279238 SARO_2013SARO_0586SARO_2013
MSUC221988 MS2215MS0155MS2214MS0755
MSP409 M446_0273M446_5216M446_1373
MSP400668 MMWYL1_0717MMWYL1_0716MMWYL1_0715MMWYL1_0716
MPET420662 MPE_A0714MPE_A0715MPE_A0716
MMAG342108 AMB0279AMB1606AMB4544
MFLA265072 MFLA_2187MFLA_2186MFLA_2185
MCAP243233 MCA_2536MCA_2133MCA_2537
MAQU351348 MAQU_3165MAQU_3164MAQU_2403
LPNE400673 LPC_1771LPC_1772LPC_1773LPC_1772
LPNE297246 LPP2254LPP2255LPP2256LPP2255
LPNE297245 LPL2225LPL2226LPL2227LPL2226
LPNE272624 LPG2306LPG2307LPG2308LPG2307
LCHO395495 LCHO_3515LCHO_3516LCHO_3813
KPNE272620 GKPORF_B3317GKPORF_B3316GKPORF_B3315GKPORF_B5318
JSP375286 MMA_3221MMA_3220MMA_3219
ILOI283942 IL0234IL0235IL1366
HSOM228400 HSM_0023HSM_1928HSM_0022HSM_0946
HSOM205914 HS_0157HS_0035HS_0156HS_0597
HINF71421 HI_0744HI_0572HI_0743HI_1532
HINF374930 CGSHIEE_08385CGSHIEE_00105CGSHIEE_08390CGSHIEE_05240
HINF281310 NTHI0901NTHI0705NTHI0900NTHI1601
HHAL349124 HHAL_1212HHAL_1689HHAL_1213
HDUC233412 HD_0662HD_0700HD_0661HD_0300
HCHE349521 HCH_01353HCH_01355HCH_01356HCH_04310
HARS204773 HEAR2974HEAR2973HEAR2972
FTUL458234 FTA_0012FTA_1038FTA_0311FTA_1038
FTUL418136 FTW_1986FTW_1009FTW_0791FTW_1009
FTUL401614 FTN_0120FTN_0982FTN_1510FTN_0982
FTUL393115 FTF1748FTF0533CFTF1500FTF0533C
FTUL393011 FTH_0010FTH_0964FTH_0293FTH_0964
FTUL351581 FTL_0010FTL_0985FTL_0293FTL_0985
FRANT FT.1750GRXASECB2GRXA
FPHI484022 FPHI_0706FPHI_1618FPHI_1132FPHI_1618
ESP42895 ENT638_0124ENT638_0125ENT638_0126ENT638_1364
ERUM302409 ERGA_CDS_08530ERGA_CDS_07740ERGA_CDS_08530
ERUM254945 ERWE_CDS_08620ERWE_CDS_07830ERWE_CDS_08620
ELIT314225 ELI_06450ELI_10500ELI_06450
EFER585054 EFER_3605EFER_3604EFER_3603EFER_3604
ECOO157 YIBNGRXCSECBGRXA
ECOL83334 ECS4489ECS4488ECS4487ECS0929
ECOL585397 ECED1_4297ECED1_4296ECED1_4295ECED1_0813
ECOL585057 ECIAI39_4132ECIAI39_4131ECIAI39_4130ECIAI39_0828
ECOL585056 ECUMN_4128ECUMN_4127ECUMN_4126ECUMN_1039
ECOL585055 EC55989_4078EC55989_4077EC55989_4076EC55989_0894
ECOL585035 ECS88_4028ECS88_4027ECS88_4026ECS88_0866
ECOL585034 ECIAI1_3784ECIAI1_3783ECIAI1_3782ECIAI1_0888
ECOL481805 ECOLC_0097ECOLC_0098ECOLC_0099ECOLC_2747
ECOL469008 ECBD_0114ECBD_0115ECBD_0116ECBD_2745
ECOL439855 ECSMS35_3948ECSMS35_3947ECSMS35_3946ECSMS35_0876
ECOL413997 ECB_03469ECB_03468ECB_03467ECB_00854
ECOL409438 ECSE_3893ECSE_3892ECSE_3891ECSE_0907
ECOL405955 APECO1_2844APECO1_1244APECO1_2846APECO1_1244
ECOL364106 UTI89_C4155UTI89_C4152UTI89_C4151UTI89_C0852
ECOL362663 ECP_3712ECP_3711ECP_3710ECP_0863
ECOL331111 ECE24377A_4115ECE24377A_4114ECE24377A_4113ECE24377A_0921
ECOL316407 ECK3601:JW3586:B3611ECK3600:JW3585:B3610ECK3599:JW3584:B3609ECK0840:JW0833:B0849
ECOL199310 C4436C4433C4432C0982
ECHA205920 ECH_1062ECH_0233ECH_1062
ECAR218491 ECA0171ECA2681ECA0172ECA2681
ECAN269484 ECAJ_0854ECAJ_0777ECAJ_0854
DARO159087 DARO_0611DARO_0612DARO_0613
CSAL290398 CSAL_0047CSAL_1255CSAL_0048CSAL_1823
CPSY167879 CPS_4390CPS_4389CPS_4388
CJAP155077 CJA_3555CJA_3556CJA_3557
CBUR434922 COXBU7E912_0463COXBU7E912_0464COXBU7E912_0465
CBUR360115 COXBURSA331_A1704COXBURSA331_A1703COXBURSA331_A1702
CBUR227377 CBU_1521CBU_1520CBU_1519
CBLO291272 BPEN_629BPEN_628BPEN_627BPEN_628
CAULO CC0829CC3742CC0829
BVIE269482 BCEP1808_2956BCEP1808_2955BCEP1808_2954BCEP1808_2955
BTRI382640 BT_0611BT_0110BT_0611
BTHA271848 BTH_I0417BTH_I0418BTH_I0419
BSUI470137 BSUIS_A1717BSUIS_A1913BSUIS_A1717
BSUI204722 BR_1876BR_2072BR_1876
BSP376 BRADO0582BRADO0203BRADO0582
BSP36773 BCEP18194_A6185BCEP18194_A6184BCEP18194_A6183BCEP18194_A6184
BQUI283165 BQ03040BQ00950BQ03040
BPSE320373 BURPS668_0479BURPS668_0480BURPS668_0481
BPSE320372 BURPS1710B_A0704BURPS1710B_A0705BURPS1710B_A0706
BPSE272560 BPSL0444BPSL0445BPSL0446
BPET94624 BPET4695BPET4696BPET4697BPET4696
BPER257313 BP0606BP0605BP0604
BPAR257311 BPP0294BPP0293BPP0292
BOVI236 GBOORF1875GBOORF2068GBOORF1875
BMEL359391 BAB1_1879BAB1_2073BAB1_1879
BMEL224914 BMEI0184BMEI2055BMEI0184
BMAL320389 BMA10247_2839BMA10247_2840BMA10247_2841
BMAL320388 BMASAVP1_A0180BMASAVP1_A0179BMASAVP1_A0178
BMAL243160 BMA_3207BMA_3206BMA_3205
BHEN283166 BH04010BH01020BH04010
BCEN331272 BCEN2424_2856BCEN2424_2855BCEN2424_2854BCEN2424_2855
BCEN331271 BCEN_2242BCEN_2241BCEN_2240BCEN_2241
BCAN483179 BCAN_A1920BCAN_A2118BCAN_A1920
BBRO257310 BB0297BB0296BB0295
BBAC360095 BARBAKC583_0368BARBAKC583_1296BARBAKC583_0368
BAMB398577 BAMMC406_2773BAMMC406_2772BAMMC406_2771BAMMC406_2772
BAMB339670 BAMB_2911BAMB_2910BAMB_2909BAMB_2910
BABO262698 BRUAB1_1855BRUAB1_2047BRUAB1_1855
ASP62977 ACIAD3120ACIAD3121ACIAD3122ACIAD3121
ASP62928 AZO2810AZO2811AZO2812
ASP232721 AJS_3504AJS_3503AJS_3502AJS_3503
ASAL382245 ASA_4103ASA_1686ASA_4102ASA_1686
APLE434271 APJL_1534APJL_1507APJL_1535APJL_0054
APLE416269 APL_1508APL_1482APL_1509APL_0054
APHA212042 APH_1162APH_0097APH_1162
AMET293826 AMET_0141AMET_4330AMET_4330
AMAR234826 AM1083AM114AM1083
AHYD196024 AHA_0294AHA_2625AHA_0295AHA_2625
AFER243159 AFE_0739AFE_0740AFE_0968
AEHR187272 MLG_2570MLG_2464MLG_2571
ADEH290397 ADEH_4022ADEH_2019ADEH_2019
ACAU438753 AZC_4296AZC_4672AZC_4296
ABOR393595 ABO_2274ABO_2273ABO_2272ABO_2632
ABAU360910 BAV0242BAV0241BAV0240BAV0241
AAVE397945 AAVE_3857AAVE_3856AAVE_3855AAVE_3856


Organism features enriched in list (features available for 213 out of the 226 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 8.711e-61692
Disease:Brucellosis 0.006316755
Disease:Bubonic_plague 0.002273166
Disease:Dysentery 0.002273166
Disease:Gastroenteritis 0.00283741013
Disease:Tularemia 0.006316755
Endospores:No 4.366e-1338211
Endospores:Yes 2.776e-10153
GC_Content_Range4:0-40 2.788e-1240213
GC_Content_Range4:40-60 3.280e-7110224
GC_Content_Range7:0-30 0.0001283647
GC_Content_Range7:30-40 1.004e-734166
GC_Content_Range7:50-60 3.453e-864107
GC_Content_Range7:60-70 0.002459762134
Genome_Size_Range5:0-2 4.449e-732155
Genome_Size_Range5:2-4 0.000043551197
Genome_Size_Range5:4-6 2.115e-13107184
Genome_Size_Range9:0-1 0.0000543127
Genome_Size_Range9:1-2 0.000330231128
Genome_Size_Range9:2-3 0.000107127120
Genome_Size_Range9:4-5 0.00002185396
Genome_Size_Range9:5-6 1.721e-75488
Genome_Size_Range9:6-8 0.00296512238
Gram_Stain:Gram_Neg 3.488e-39193333
Habitat:Host-associated 0.007802887206
Habitat:Specialized 0.0000618753
Motility:No 2.926e-1123151
Motility:Yes 0.0000383120267
Optimal_temp.:- 0.0000236117257
Optimal_temp.:35-37 0.00003891213
Oxygen_Req:Aerobic 0.000784084185
Oxygen_Req:Anaerobic 2.823e-174102
Oxygen_Req:Facultative 0.000077394201
Pathogenic_in:Animal 0.00029753766
Pathogenic_in:Human 0.001855393213
Pathogenic_in:No 2.228e-852226
Pathogenic_in:Plant 0.00311081115
Shape:Coccobacillus 0.00001311111
Shape:Coccus 4.762e-71182
Shape:Rod 1.913e-11164347
Shape:Sphere 0.0017113119
Shape:Spiral 0.0007625434
Temp._range:Psychrophilic 0.001689089
Temp._range:Thermophilic 1.465e-6135



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 330
Effective number of orgs (counting one per cluster within 468 clusters): 264

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
WSUC273121 ncbi Wolinella succinogenes DSM 17400
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTHE300852 ncbi Thermus thermophilus HB81
TTHE262724 ncbi Thermus thermophilus HB271
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB41
TSP28240 Thermotoga sp.1
TSP1755 Thermoanaerobacter sp.1
TROS309801 ncbi Thermomicrobium roseum DSM 51591
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332231
TPET390874 ncbi Thermotoga petrophila RKU-11
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TMAR243274 ncbi Thermotoga maritima MSB81
TLET416591 ncbi Thermotoga lettingae TMO1
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TFUS269800 ncbi Thermobifida fusca YX1
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12510
TDEN243275 ncbi Treponema denticola ATCC 354051
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen0
STRO369723 ncbi Salinispora tropica CNB-4400
STOK273063 ncbi Sulfolobus tokodaii 70
STHE322159 ncbi Streptococcus thermophilus LMD-90
STHE299768 ncbi Streptococcus thermophilus CNRZ10660
STHE292459 ncbi Symbiobacterium thermophilum IAM 148631
STHE264199 ncbi Streptococcus thermophilus LMG 183110
SSUI391296 ncbi Streptococcus suis 98HAH331
SSUI391295 ncbi Streptococcus suis 05ZYH331
SSP84588 ncbi Synechococcus sp. WH 81021
SSP64471 ncbi Synechococcus sp. CC93111
SSP387093 ncbi Sulfurovum sp. NBC37-11
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)1
SSP321327 ncbi Synechococcus sp. JA-3-3Ab1
SSP1148 ncbi Synechocystis sp. PCC 68031
SSP1131 Synechococcus sp. CC96051
SSOL273057 ncbi Sulfolobus solfataricus P20
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153051
SRUB309807 ncbi Salinibacter ruber DSM 138550
SPYO370554 ncbi Streptococcus pyogenes MGAS107501
SPYO370553 ncbi Streptococcus pyogenes MGAS20961
SPYO370552 ncbi Streptococcus pyogenes MGAS102701
SPYO370551 ncbi Streptococcus pyogenes MGAS94291
SPYO319701 ncbi Streptococcus pyogenes MGAS61801
SPYO293653 ncbi Streptococcus pyogenes MGAS50051
SPYO286636 ncbi Streptococcus pyogenes MGAS103941
SPYO198466 ncbi Streptococcus pyogenes MGAS3151
SPYO193567 ncbi Streptococcus pyogenes SSI-11
SPYO186103 ncbi Streptococcus pyogenes MGAS82321
SPYO160490 ncbi Streptococcus pyogenes M1 GAS1
SPNE488221 ncbi Streptococcus pneumoniae 705851
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-61
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-141
SPNE171101 ncbi Streptococcus pneumoniae R61
SPNE170187 ncbi Streptococcus pneumoniae G541
SPNE1313 Streptococcus pneumoniae1
SMUT210007 ncbi Streptococcus mutans UA1591
SMAR399550 ncbi Staphylothermus marinus F10
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14351
SGOR29390 Streptococcus gordonii Challis1
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB1
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23381
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122281
SEPI176279 ncbi Staphylococcus epidermidis RP62A1
SCO ncbi Streptomyces coelicolor A3(2)0
SAVE227882 ncbi Streptomyces avermitilis MA-46800
SAUR93062 ncbi Staphylococcus aureus aureus COL1
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83251
SAUR426430 ncbi Staphylococcus aureus aureus Newman1
SAUR418127 ncbi Staphylococcus aureus aureus Mu31
SAUR367830 Staphylococcus aureus aureus USA3001
SAUR359787 ncbi Staphylococcus aureus aureus JH11
SAUR359786 ncbi Staphylococcus aureus aureus JH91
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4761
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2521
SAUR273036 ncbi Staphylococcus aureus RF1221
SAUR196620 ncbi Staphylococcus aureus aureus MW21
SAUR158879 ncbi Staphylococcus aureus aureus N3151
SAUR158878 ncbi Staphylococcus aureus aureus Mu501
SARE391037 ncbi Salinispora arenicola CNS-2050
SAGA211110 ncbi Streptococcus agalactiae NEM3161
SAGA208435 ncbi Streptococcus agalactiae 2603V/R1
SAGA205921 ncbi Streptococcus agalactiae A9091
SACI56780 ncbi Syntrophus aciditrophicus SB1
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99411
RSP357808 ncbi Roseiflexus sp. RS-11
RSP101510 ncbi Rhodococcus jostii RHA10
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332090
RCAS383372 ncbi Roseiflexus castenholzii DSM 139411
RALB246199 Ruminococcus albus 80
PTOR263820 ncbi Picrophilus torridus DSM 97901
PTHE370438 ncbi Pelotomaculum thermopropionicum SI0
PSP117 Pirellula sp.0
PRUM264731 ncbi Prevotella ruminicola 230
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257451
PMOB403833 ncbi Petrotoga mobilis SJ950
PMAR93060 ncbi Prochlorococcus marinus MIT 92151
PMAR74547 ncbi Prochlorococcus marinus MIT 93131
PMAR74546 ncbi Prochlorococcus marinus MIT 93121
PMAR59920 ncbi Prochlorococcus marinus NATL2A1
PMAR167555 ncbi Prochlorococcus marinus NATL1A1
PMAR167546 ncbi Prochlorococcus marinus MIT 93011
PMAR167542 ncbi Prochlorococcus marinus MIT 95151
PMAR167540 Prochlorococcus marinus pastoris MED4ax1
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13751
PMAR146891 ncbi Prochlorococcus marinus AS96011
PLUT319225 ncbi Chlorobium luteolum DSM 2730
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 170
PHOR70601 ncbi Pyrococcus horikoshii OT30
PGIN242619 ncbi Porphyromonas gingivalis W830
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PDIS435591 ncbi Parabacteroides distasonis ATCC 85031
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PAER178306 ncbi Pyrobaculum aerophilum IM20
PACN267747 ncbi Propionibacterium acnes KPA1712020
PABY272844 ncbi Pyrococcus abyssi GE50
OIHE221109 ncbi Oceanobacillus iheyensis HTE8311
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2551
NSP387092 ncbi Nitratiruptor sp. SB155-21
NSP35761 Nocardioides sp.0
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
NHAM323097 ncbi Nitrobacter hamburgensis X141
NFAR247156 ncbi Nocardia farcinica IFM 101520
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-11
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra0
MTUB336982 ncbi Mycobacterium tuberculosis F110
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE264732 ncbi Moorella thermoacetica ATCC 390730
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MTBRV ncbi Mycobacterium tuberculosis H37Rv0
MTBCDC ncbi Mycobacterium tuberculosis CDC15510
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSP189918 ncbi Mycobacterium sp. KMS1
MSP164757 ncbi Mycobacterium sp. JLS1
MSP164756 ncbi Mycobacterium sp. MCS1
MSME246196 ncbi Mycobacterium smegmatis MC2 1551
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go11
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR368407 ncbi Methanoculleus marisnigri JR11
MMAR267377 ncbi Methanococcus maripaludis S20
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK1
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBUR259564 ncbi Methanococcoides burtonii DSM 62421
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P21
MBOV233413 ncbi Mycobacterium bovis AF2122/970
MBAR269797 ncbi Methanosarcina barkeri Fusaro1
MAVI243243 ncbi Mycobacterium avium 1040
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A1
MABS561007 ncbi Mycobacterium abscessus ATCC 199770
LXYL281090 ncbi Leifsonia xyli xyli CTCB070
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53341
LSPH444177 ncbi Lysinibacillus sphaericus C3-411
LSAK314315 ncbi Lactobacillus sakei sakei 23K1
LREU557436 ncbi Lactobacillus reuteri DSM 200161
LPLA220668 ncbi Lactobacillus plantarum WCFS11
LMON265669 ncbi Listeria monocytogenes 4b F23651
LMON169963 ncbi Listeria monocytogenes EGD-e1
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82930
LLAC272623 ncbi Lactococcus lactis lactis Il14031
LLAC272622 ncbi Lactococcus lactis cremoris SK111
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-000
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1300
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566010
LINN272626 ncbi Listeria innocua Clip112621
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LCAS321967 ncbi Lactobacillus casei ATCC 3341
LBRE387344 ncbi Lactobacillus brevis ATCC 3671
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1970
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5500
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)1
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)1
LACI272621 ncbi Lactobacillus acidophilus NCFM1
KRAD266940 ncbi Kineococcus radiotolerans SRS302160
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSAL478009 ncbi Halobacterium salinarum R10
HPYL85963 ncbi Helicobacter pylori J990
HPYL357544 ncbi Helicobacter pylori HPAG10
HPY ncbi Helicobacter pylori 266950
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMOD498761 ncbi Heliobacterium modesticaldum Ice11
HMAR272569 ncbi Haloarcula marismortui ATCC 430490
HHEP235279 ncbi Helicobacter hepaticus ATCC 514490
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237791
HACI382638 ncbi Helicobacter acinonychis Sheeba0
GVIO251221 ncbi Gloeobacter violaceus PCC 74211
GURA351605 ncbi Geobacter uraniireducens Rf41
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-21
GSUL243231 ncbi Geobacter sulfurreducens PCA1
GMET269799 ncbi Geobacter metallireducens GS-151
GFOR411154 ncbi Gramella forsetii KT08030
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S850
FSP1855 Frankia sp. EAN1pec0
FSP106370 ncbi Frankia sp. CcI31
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255860
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B11
FMAG334413 ncbi Finegoldia magna ATCC 293281
FJOH376686 ncbi Flavobacterium johnsoniae UW1011
FALN326424 ncbi Frankia alni ACN14a0
EFAE226185 ncbi Enterococcus faecalis V5831
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough0
DSP255470 ncbi Dehalococcoides sp. CBDB11
DSP216389 ncbi Dehalococcoides sp. BAV11
DRED349161 ncbi Desulfotomaculum reducens MI-10
DRAD243230 ncbi Deinococcus radiodurans R10
DPSY177439 ncbi Desulfotalea psychrophila LSv541
DHAF138119 ncbi Desulfitobacterium hafniense Y510
DGEO319795 ncbi Deinococcus geothermalis DSM 113000
DETH243164 ncbi Dehalococcoides ethenogenes 1951
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G200
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTET212717 ncbi Clostridium tetani E880
CTEP194439 ncbi Chlorobium tepidum TLS0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE250
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPHY357809 ncbi Clostridium phytofermentans ISDg1
CNOV386415 ncbi Clostridium novyi NT1
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3820
CMIC31964 ncbi Clavibacter michiganensis sepedonicus0
CMET456442 ncbi Candidatus Methanoregula boonei 6A81
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CKLU431943 ncbi Clostridium kluyveri DSM 5550
CJEJ407148 ncbi Campylobacter jejuni jejuni 811160
CJEJ360109 ncbi Campylobacter jejuni doylei 269.970
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1760
CJEJ195099 ncbi Campylobacter jejuni RM12210
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111680
CJEI306537 ncbi Corynebacterium jeikeium K4110
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334061
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3810
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130320
CFET360106 ncbi Campylobacter fetus fetus 82-400
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CEFF196164 ncbi Corynebacterium efficiens YS-3141
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131290
CDIF272563 ncbi Clostridium difficile 6301
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C0
CCUR360105 ncbi Campylobacter curvus 525.920
CCON360104 ncbi Campylobacter concisus 138260
CCHL340177 ncbi Chlorobium chlorochromatii CaD30
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B1
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80521
CACE272562 ncbi Clostridium acetobutylicum ATCC 8240
CABO218497 ncbi Chlamydophila abortus S26/30
BXEN266265 ncbi Burkholderia xenovorans LB4000
BWEI315730 ncbi Bacillus weihenstephanensis KBAB41
BTUR314724 ncbi Borrelia turicatae 91E1350
BTHU412694 ncbi Bacillus thuringiensis Al Hakam1
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-271
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54820
BSUB ncbi Bacillus subtilis subtilis 1681
BPUM315750 ncbi Bacillus pumilus SAFR-0321
BLON206672 ncbi Bifidobacterium longum NCC27050
BLIC279010 ncbi Bacillus licheniformis ATCC 145801
BHER314723 ncbi Borrelia hermsii DAH0
BHAL272558 ncbi Bacillus halodurans C-1251
BGAR290434 ncbi Borrelia garinii PBi0
BFRA295405 ncbi Bacteroides fragilis YCH461
BFRA272559 ncbi Bacteroides fragilis NCTC 93431
BCLA66692 ncbi Bacillus clausii KSM-K161
BCIC186490 Candidatus Baumannia cicadellinicola1
BCER572264 ncbi Bacillus cereus 03BB1021
BCER405917 Bacillus cereus W1
BCER315749 ncbi Bacillus cytotoxicus NVH 391-981
BCER288681 ncbi Bacillus cereus E33L1
BCER226900 ncbi Bacillus cereus ATCC 145791
BBUR224326 ncbi Borrelia burgdorferi B310
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BANT592021 ncbi Bacillus anthracis A02481
BANT568206 ncbi Bacillus anthracis CDC 6841
BANT261594 ncbi Bacillus anthracis Ames Ancestor1
BANT260799 ncbi Bacillus anthracis Sterne1
BAMY326423 ncbi Bacillus amyloliquefaciens FZB421
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AVAR240292 ncbi Anabaena variabilis ATCC 294131
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP1667 Arthrobacter sp.1
APER272557 ncbi Aeropyrum pernix K10
ANAE240017 Actinomyces oris MG11
AMAR329726 ncbi Acaryochloris marina MBIC110171
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
ACEL351607 ncbi Acidothermus cellulolyticus 11B0
ABUT367737 ncbi Arcobacter butzleri RM40180
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3451
AAUR290340 ncbi Arthrobacter aurescens TC11
AAEO224324 ncbi Aquifex aeolicus VF50


Names of the homologs of the genes in the group in each of these orgs
  EG12295   EG12294   EG10937   EG10417   
WSUC273121
UURE95667
UURE95664
UPAR505682
TWHI218496
TWHI203267
TVOL273116
TTHE300852 TTHA0836
TTHE262724 TT_C0484
TTEN273068 TTE1148
TSP28240 TRQ2_1777
TSP1755 TETH514_2334
TROS309801 TRD_A0835
TPSE340099 TETH39_0114
TPET390874 TPET_1719
TPEN368408
TPAL243276
TMAR243274 TM_1031
TLET416591 TLET_0994
TKOD69014
TFUS269800 TFU_3083
TDEN326298
TDEN243275 TDE_0839
TACI273075
SWOL335541
STRO369723
STOK273063
STHE322159
STHE299768
STHE292459 STH108
STHE264199
SSUI391296 SSU98_1692
SSUI391295 SSU05_1683
SSP84588 SYNW2310OR2552
SSP64471 GSYN2804
SSP387093 SUN_2233
SSP321332 CYB_0125
SSP321327 CYA_0532
SSP1148 SSR2061
SSP1131 SYNCC9605_2441
SSOL273057
SSAP342451 SSP1221
SRUB309807
SPYO370554 MGAS10750_SPY1364
SPYO370553 MGAS2096_SPY1276
SPYO370552 MGAS10270_SPY1272
SPYO370551 MGAS9429_SPY1251
SPYO319701 M28_SPY1195
SPYO293653 M5005_SPY1256
SPYO286636 M6_SPY1277
SPYO198466 SPYM3_1179
SPYO193567 SPS0683
SPYO186103 SPYM18_1545
SPYO160490 SPY1528
SPNE488221 SP70585_0737
SPNE487214 SPH_0773
SPNE487213 SPT_0702
SPNE171101 SPR0595
SPNE170187 SPN04040
SPNE1313 SPJ_0629
SMUT210007 SMU_543
SMAR399550
SHAE279808 SH1382
SGOR29390 SGO_0667
SFUM335543 SFUM_3218
SERY405948 SACE_5798
SEPI176280 SE_1218
SEPI176279 SERP1098
SCO
SAVE227882
SAUR93062 SACOL1592
SAUR93061 SAOUHSC_01630
SAUR426430 NWMN_1438
SAUR418127 SAHV_1521
SAUR367830 SAUSA300_1495
SAUR359787 SAURJH1_1625
SAUR359786 SAURJH9_1592
SAUR282459 SAS1472
SAUR282458 SAR1611
SAUR273036 SAB1406
SAUR196620 MW1486
SAUR158879 SA1364
SAUR158878 SAV1534
SARE391037
SAGA211110 GBS0519
SAGA208435 SAG_0472
SAGA205921 SAK_0574
SACI56780 SYN_00014
SACI330779
RXYL266117 RXYL_1609
RSP357808 ROSERS_3735
RSP101510
RSAL288705
RCAS383372 RCAS_1502
RALB246199
PTOR263820 PTO0819
PTHE370438
PSP117
PRUM264731
PPEN278197 PEPE_0733
PMOB403833
PMAR93060 P9215_01971
PMAR74547 PMT2062
PMAR74546 PMT9312_0181
PMAR59920 PMN2A_1547
PMAR167555 NATL1_02541
PMAR167546 P9301ORF_0201
PMAR167542 P9515ORF_0215
PMAR167540 PMM0179
PMAR167539 PRO_0204
PMAR146891 A9601_01971
PLUT319225
PISL384616
PINT246198
PHOR70601
PGIN242619
PFUR186497
PDIS435591 BDI_0541
PAST100379
PARS340102
PAER178306
PACN267747
PABY272844
OIHE221109 OB1901
NWIN323098 NWI_0106
NSP387092 NIS_1183
NSP35761
NPHA348780
NHAM323097 NHAM_0116
NFAR247156
MVAN350058 MVAN_4024
MTUB419947
MTUB336982
MTHE349307
MTHE264732
MTHE187420
MTBRV
MTBCDC
MSYN262723
MSTA339860
MSP189918 MKMS_5402
MSP164757 MJLS_5692
MSP164756 MMCS_5313
MSME246196 MSMEG_5386
MSED399549
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAZ192952 MM1904
MMAR444158
MMAR426368
MMAR402880
MMAR368407 MEMAR_2054
MMAR267377
MLEP272631
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGIL350054 MFLV_0984
MGEN243273
MFLO265311
MCAP340047
MBUR259564 MBUR_1559
MBOV410289 BCG_0364
MBOV233413
MBAR269797 MBAR_A1649
MAVI243243
MART243272
MAEO419665
MACE188937 MA0746
MABS561007
LXYL281090
LWEL386043 LWE1366
LSPH444177 BSPH_4414
LSAK314315 LSA1328
LREU557436 LREU_1205
LPLA220668 LP_1576
LMON265669 LMOF2365_1368
LMON169963 LMO1351
LMES203120
LLAC272623 L85091
LLAC272622 LACR_2310
LJOH257314
LINT363253
LINT267671
LINT189518
LINN272626 LIN1388
LHEL405566
LGAS324831
LDEL390333
LDEL321956
LCAS321967 LSEI_1658
LBRE387344 LVIS_0995
LBOR355277
LBOR355276
LBIF456481 LEPBI_I2629
LBIF355278 LBF_2548
LACI272621 LBA1504
KRAD266940
IHOS453591
HWAL362976
HSP64091
HSAL478009
HPYL85963
HPYL357544
HPY
HMUK485914
HMOD498761 HM1_2753
HMAR272569
HHEP235279
HBUT415426
HAUR316274 HAUR_1911
HACI382638
GVIO251221 GSL3683
GURA351605 GURA_4224
GTHE420246 GTNG_1981
GSUL243231 GSU_0398
GMET269799 GMET_3122
GFOR411154
FSUC59374
FSP1855
FSP106370 FRANCCI3_4423
FNUC190304
FNOD381764 FNOD_0854
FMAG334413 FMG_0301
FJOH376686 FJOH_4649
FALN326424
EFAE226185 EF_2787
DVUL882
DSP255470 CBDBA1349
DSP216389 DEHABAV1_1201
DRED349161
DRAD243230
DPSY177439 DP0115
DHAF138119
DGEO319795
DETH243164 DET_1392
DDES207559
CTRA471473
CTRA471472
CTET212717
CTEP194439
CSUL444179
CPRO264201
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPHY357809 CPHY_1869
CNOV386415 NT01CX_2375
CMUR243161
CMIC443906
CMIC31964
CMET456442 MBOO_0084
CMAQ397948
CKOR374847
CKLU431943
CJEJ407148
CJEJ360109
CJEJ354242
CJEJ195099
CJEJ192222
CJEI306537
CHUT269798 CHU_3559
CHOM360107
CGLU196627
CFET360106
CFEL264202
CEFF196164 CE0318
CDIP257309
CDIF272563 CD1470
CDES477974
CCUR360105
CCON360104
CCHL340177
CCAV227941
CBOT508765 CLL_A0210
CBEI290402 CBEI_0125
CACE272562
CABO218497
BXEN266265
BWEI315730 BCERKBAB4_4064
BTUR314724
BTHU412694 BALH_3814
BTHU281309 BT9727_3953
BTHE226186
BSUB BSU24540
BPUM315750 BPUM_0191
BLON206672
BLIC279010 BL01549
BHER314723
BHAL272558 BH2813
BGAR290434
BFRA295405 BF0493
BFRA272559 BF0438
BCLA66692 ABC2570
BCIC186490 BCI_0174
BCER572264 BCA_4319
BCER405917 BCE_4285
BCER315749 BCER98_2900
BCER288681 BCE33L3963
BCER226900 BC_4210
BBUR224326
BAPH372461
BANT592021 BAA_4449
BANT568206 BAMEG_4467
BANT261594 GBAA4432
BANT260799 BAS4112
BAMY326423 RBAM_005440
BAFZ390236
AYEL322098
AVAR240292 AVA_2143
AURANTIMONAS
ASP1667 ARTH_3833
APER272557
ANAE240017 ANA_0728
AMAR329726 AM1_B0135
ALAI441768
AFUL224325
ACEL351607
ABUT367737
ABAC204669 ACID345_0799
AAUR290340 AAUR_PTC10236
AAEO224324


Organism features enriched in list (features available for 310 out of the 330 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00049996392
Arrangment:Clusters 0.00001761717
Disease:Food_poisoning 0.003215899
Disease:Gastroenteritis 0.0048685213
Disease:Pharyngitis 0.006122788
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 0.00088291111
Disease:Wide_range_of_infections 0.00088291111
Disease:bronchitis_and_pneumonitis 0.006122788
Endospores:No 7.906e-24169211
Endospores:Yes 0.00028814053
GC_Content_Range4:0-40 2.111e-13155213
GC_Content_Range4:40-60 0.000028896224
GC_Content_Range4:60-100 0.000093358145
GC_Content_Range7:30-40 2.645e-13127166
GC_Content_Range7:50-60 1.463e-831107
GC_Content_Range7:60-70 2.100e-648134
GC_Content_Range7:70-100 0.00883771011
Genome_Size_Range5:0-2 3.072e-10115155
Genome_Size_Range5:2-4 0.0002281124197
Genome_Size_Range5:4-6 3.802e-1456184
Genome_Size_Range5:6-10 0.00118591547
Genome_Size_Range9:0-1 0.00472522127
Genome_Size_Range9:1-2 7.226e-894128
Genome_Size_Range9:2-3 5.224e-685120
Genome_Size_Range9:4-5 1.312e-72896
Genome_Size_Range9:5-6 6.716e-62888
Genome_Size_Range9:6-8 0.0001006938
Gram_Stain:Gram_Neg 1.322e-40100333
Gram_Stain:Gram_Pos 2.618e-33139150
Habitat:Multiple 0.002228080178
Habitat:Specialized 1.661e-64453
Motility:No 9.016e-15120151
Motility:Yes 0.0000115117267
Optimal_temp.:- 0.0000513114257
Optimal_temp.:30-37 9.101e-61818
Oxygen_Req:Aerobic 0.000184979185
Oxygen_Req:Anaerobic 3.049e-1082102
Pathogenic_in:Animal 0.00155762466
Pathogenic_in:No 0.0017898136226
Shape:Coccus 5.742e-96782
Shape:Irregular_coccus 0.00001761717
Shape:Rod 2.908e-16137347
Shape:Sphere 0.00069811719
Shape:Spiral 8.052e-63034
Temp._range:Hyperthermophilic 7.195e-62223
Temp._range:Thermophilic 5.989e-73235



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2912070.6788
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2962080.6727
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2902050.6680
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3002080.6626
PWY-5918 (heme biosynthesis I)2721950.6484
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2861990.6381
PWY-5913 (TCA cycle variation IV)3012030.6267
GLYCOCAT-PWY (glycogen degradation I)2461810.6267
PWY-1269 (CMP-KDO biosynthesis I)3252110.6222
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181670.6154
ECASYN-PWY (enterobacterial common antigen biosynthesis)1911530.6061
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251660.5865
NAGLIPASYN-PWY (lipid IVA biosynthesis)3482130.5833
GLUTATHIONESYN-PWY (glutathione biosynthesis)3392080.5699
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951480.5562
PWY-5857 (ubiquinone-10 biosynthesis (prokaryotic))1831420.5542
PWY-4041 (γ-glutamyl cycle)2791830.5491
AST-PWY (arginine degradation II (AST pathway))1201080.5458
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)1761370.5425
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)1491220.5318
PWY-5855 (ubiquinone-7 biosynthesis (prokaryotic))1911420.5265
UBISYN-PWY (ubiquinol-8 biosynthesis (prokaryotic))3982190.5186
TYRFUMCAT-PWY (tyrosine degradation I)1841370.5141
PWY-5669 (phosphatidylethanolamine biosynthesis I)4162200.4897
PWY-5856 (ubiquinone-9 biosynthesis (prokaryotic))2551640.4854
DAPLYSINESYN-PWY (lysine biosynthesis I)3421960.4826
PWY-5084 (2-ketoglutarate dehydrogenase complex)3261900.4795
KDOSYN-PWY (KDO transfer to lipid IVA I)1801300.4766
KDO-NAGLIPASYN-PWY (superpathway of KDO2-lipid A biosynthesis)1791290.4727
PWY0-845 (superpathway of pyridoxal 5'-phosphate biosynthesis and salvage)3291880.4591
PWY-5386 (methylglyoxal degradation I)3051790.4565
PWY0-1329 (succinate to cytochrome bo oxidase electron transfer)96840.4547
PWY-5755 (4-hydroxybenzoate biosynthesis II (bacteria and fungi))81750.4528
PWY0-501 (lipoate biosynthesis and incorporation I)3852050.4489
PWY-5783 (octaprenyl diphosphate biosynthesis)1651180.4399
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491540.4340
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491540.4340
PWY0-1335 (NADH to cytochrome bo oxidase electron transfer)112900.4292
GLUCONSUPER-PWY (D-gluconate degradation)2291440.4219
LIPASYN-PWY (phospholipases)2121360.4164
PWY-5188 (tetrapyrrole biosynthesis I)4392160.4153
PWY-5148 (acyl-CoA hydrolysis)2271420.4138
PWY0-1353 (succinate to cytochrome bd oxidase electron transfer)1781200.4096
REDCITCYC (TCA cycle variation II)1741180.4084



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG12294   EG10937   EG10417   
EG122950.9997070.9998310.998886
EG122940.9996910.999711
EG109370.998909
EG10417



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PAIRWISE BLAST SCORES:

  EG12295   EG12294   EG10937   EG10417   
EG122950.0f0---
EG12294-0.0f0-3.6e-7
EG10937--0.0f0-
EG10417-3.6e-7-0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10937 EG12294 EG12295 (centered at EG12294)
EG10417 (centered at EG10417)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  EG12295   EG12294   EG10937   EG10417   
331/623310/623268/623187/623
AAUR290340:1:Tyes0---
AAVE397945:0:Tyes2101
ABAC204669:0:Tyes0---
ABAU360910:0:Tyes2101
ABOR393595:0:Tyes210362
ACAU438753:0:Tyes-03850
ACRY349163:8:Tyes-0296-
ADEH290397:0:Tyes20230-0
AEHR187272:0:Tyes1060107-
AFER243159:0:Tyes01227-
AHYD196024:0:Tyes0227812278
AMAR234826:0:Tyes-7050705
AMAR329726:7:Tyes-0--
AMET293826:0:Tyes04140-4140
ANAE240017:0:Tyes0---
AORE350688:0:Tyes-0-0
APHA212042:0:Tyes-100601006
APLE416269:0:Tyes1478145114790
APLE434271:0:Tno1474144614750
ASAL382245:5:Tyes2333023320
ASP1667:3:Tyes0---
ASP232721:2:Tyes2101
ASP62928:0:Tyes012-
ASP62977:0:Tyes0121
ASP76114:2:Tyes-01-
AVAR240292:3:Tyes-0--
BABO262698:1:Tno-01830
BAMB339670:3:Tno2101
BAMB398577:3:Tno2101
BAMY326423:0:Tyes0---
BANT260799:0:Tno0---
BANT261594:2:Tno0---
BANT568206:2:Tyes0---
BANT592021:2:Tno0---
BAPH198804:0:Tyes0-1-
BBAC264462:0:Tyes20920--
BBAC360095:0:Tyes-08610
BBRO257310:0:Tyes210-
BCAN483179:1:Tno-01950
BCEN331271:2:Tno2101
BCEN331272:3:Tyes2101
BCER226900:1:Tyes0---
BCER288681:0:Tno0---
BCER315749:1:Tyes0---
BCER405917:1:Tyes0---
BCER572264:1:Tno0---
BCIC186490:0:Tyes0---
BCLA66692:0:Tyes0---
BFRA272559:1:Tyes0---
BFRA295405:0:Tno0---
BHAL272558:0:Tyes0---
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