CANDIDATE ID: 1017

CANDIDATE ID: 1017

NUMBER OF GENES: 4
AVERAGE SCORE:    9.9966883e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    5.0000000e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- EG11668 (atoC) (b2220)
   Products of gene:
     - ATOC-MONOMER (AtoC transcriptional activator; Az protein inhibitor of ODC)
     - PHOSPHO-ATOC (AtoC-phosphorylated transcriptional activator)
       Regulatees:
        TU00114 (atoDAEB)

- EG10387 (glnL) (b3869)
   Products of gene:
     - PROTEIN-NRIIP (NtrB-P)
     - PROTEIN-NRII (NtrB)
       Regulatees:
     - GLNL-CPLX (NtrB)

- EG10385 (glnG) (b3868)
   Products of gene:
     - PROTEIN-NRI (NtrC transcriptional dual regulator)
     - PROTEIN-NRIP (NtrC-Phosphorylated transcriptional dual regulator)
       Regulatees:
        TU0-1003 (astCADBE)
        TU00322 (potFGHI)
        TU0-3341 (ygjG)
        TU0-3623 (ddpXABCDF)
        TU0-3622 (yhdWXYZ)
        TU0-3621 (yeaGH)
        TU0-3581 (argT-hisJQMP)
        TU0-3645 (rutABCDEFG)
        TU0-1342 (cbl)
        TU0-5903 (glnA)
        TU00029 (glnALG)
        TU00172 (glnHPQ)
        TU65 (nac)
        TU587 (glnK-amtB)
        TU00028 (glnLG)
        TU0-5901 (glnA)
        TU00027 (glnALG)
     - GLNG-CPLX (NtrC transcriptional dual regulator)

- EG10383 (glnA) (b3870)
   Products of gene:
     - GLUTAMINESYN-MONOMER (GlnA)
     - ADENYLYL-GS (adenylyl-[glutamine synthetase])
     - GLUTAMINESYN-OLIGOMER (glutamine synthetase)
       Reactions:
        ammonia + L-glutamate + ATP  ->  L-glutamine + ADP + phosphate + H+
         In pathways
         AMMASSIM-PWY (superpathway of glutamate biosynthesis)
         PWY-5505 (PWY-5505)
         PWY-3282 (PWY-3282)
         GLNSYN-PWY (glutamine biosynthesis I)
         PWY490-3 (PWY490-3)
         PWY-381 (PWY-381)
         PWY-5675 (PWY-5675)
         PWY-6549 (PWY-6549)



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ORGANISMS CONTAINING AT LEAST 3 GENES FROM THE GROUP:

Total number of orgs: 214
Effective number of orgs (counting one per cluster within 468 clusters): 156

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317584
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329534
YPES386656 ncbi Yersinia pestis Pestoides F4
YPES377628 ncbi Yersinia pestis Nepal5164
YPES360102 ncbi Yersinia pestis Antiqua4
YPES349746 ncbi Yersinia pestis Angola4
YPES214092 ncbi Yersinia pestis CO924
YPES187410 ncbi Yersinia pestis KIM 104
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80814
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A4
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110184
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103314
XFAS405440 ncbi Xylella fastidiosa M123
XFAS183190 ncbi Xylella fastidiosa Temecula13
XFAS160492 ncbi Xylella fastidiosa 9a5c3
XCAM487884 Xanthomonas campestris pv. paulliniae3
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-103
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80043
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339133
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3064
XAUT78245 ncbi Xanthobacter autotrophicus Py24
VVUL216895 ncbi Vibrio vulnificus CMCP63
VVUL196600 ncbi Vibrio vulnificus YJ0163
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106333
VFIS312309 ncbi Vibrio fischeri ES1143
VEIS391735 ncbi Verminephrobacter eiseniae EF01-24
VCHO345073 ncbi Vibrio cholerae O3954
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169614
TTUR377629 ncbi Teredinibacter turnerae T79014
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252594
TCRU317025 ncbi Thiomicrospira crunogena XCL-23
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT24
STHE292459 ncbi Symbiobacterium thermophilum IAM 148633
SSP94122 ncbi Shewanella sp. ANA-33
SSON300269 ncbi Shigella sonnei Ss0464
SSED425104 ncbi Shewanella sediminis HAW-EB33
SPRO399741 ncbi Serratia proteamaculans 5684
SPEA398579 ncbi Shewanella pealeana ATCC 7003453
SONE211586 ncbi Shewanella oneidensis MR-13
SMEL266834 ncbi Sinorhizobium meliloti 10214
SMED366394 ncbi Sinorhizobium medicae WSM4194
SLOI323850 ncbi Shewanella loihica PV-43
SHIGELLA ncbi Shigella flexneri 2a str. 2457T4
SHAL458817 ncbi Shewanella halifaxensis HAW-EB43
SGLO343509 ncbi Sodalis glossinidius morsitans4
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB4
SFLE373384 ncbi Shigella flexneri 5 str. 84014
SFLE198214 ncbi Shigella flexneri 2a str. 3014
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4764
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B674
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91504
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT184
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty24
SDYS300267 ncbi Shigella dysenteriae Sd1974
SDEN318161 ncbi Shewanella denitrificans OS2173
SDEG203122 ncbi Saccharophagus degradans 2-404
SBOY300268 ncbi Shigella boydii Sb2274
SBAL402882 ncbi Shewanella baltica OS1853
SBAL399599 ncbi Shewanella baltica OS1953
SALA317655 ncbi Sphingopyxis alaskensis RB22563
SACI56780 ncbi Syntrophus aciditrophicus SB3
RSOL267608 ncbi Ralstonia solanacearum GMI10004
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111704
RPAL316058 ncbi Rhodopseudomonas palustris HaA23
RPAL316057 ncbi Rhodopseudomonas palustris BisB53
RPAL316056 ncbi Rhodopseudomonas palustris BisB184
RPAL316055 ncbi Rhodopseudomonas palustris BisA533
RPAL258594 ncbi Rhodopseudomonas palustris CGA0093
RMET266264 ncbi Ralstonia metallidurans CH344
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38413
RFER338969 ncbi Rhodoferax ferrireducens T1184
REUT381666 ncbi Ralstonia eutropha H164
REUT264198 ncbi Ralstonia eutropha JMP1344
RETL347834 ncbi Rhizobium etli CFN 423
PTHE370438 ncbi Pelotomaculum thermopropionicum SI4
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30004
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a3
PSTU379731 ncbi Pseudomonas stutzeri A15014
PSP56811 Psychrobacter sp.4
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-13
PSP296591 ncbi Polaromonas sp. JS6664
PPUT76869 ncbi Pseudomonas putida GB-14
PPUT351746 ncbi Pseudomonas putida F14
PPUT160488 ncbi Pseudomonas putida KT24404
PPRO298386 ncbi Photobacterium profundum SS94
PNAP365044 ncbi Polaromonas naphthalenivorans CJ24
PMEN399739 ncbi Pseudomonas mendocina ymp4
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO14
PING357804 ncbi Psychromonas ingrahamii 373
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1254
PFLU220664 ncbi Pseudomonas fluorescens Pf-54
PFLU216595 ncbi Pseudomonas fluorescens SBW254
PFLU205922 ncbi Pseudomonas fluorescens Pf0-14
PENT384676 ncbi Pseudomonas entomophila L484
PCRY335284 ncbi Psychrobacter cryohalolentis K53
PCAR338963 ncbi Pelobacter carbinolicus DSM 23804
PATL342610 ncbi Pseudoalteromonas atlantica T6c4
PAER208964 ncbi Pseudomonas aeruginosa PAO14
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA144
OCAR504832 ncbi Oligotropha carboxidovorans OM53
OANT439375 ncbi Ochrobactrum anthropi ATCC 491883
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2554
NHAM323097 ncbi Nitrobacter hamburgensis X143
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124444
MXAN246197 ncbi Myxococcus xanthus DK 16223
MSP409 Methylobacterium sp.3
MSP400668 ncbi Marinomonas sp. MWYL14
MSP266779 ncbi Chelativorans sp. BNC14
MPET420662 ncbi Methylibium petroleiphilum PM14
MMAR394221 ncbi Maricaulis maris MCS104
MMAG342108 ncbi Magnetospirillum magneticum AMB-13
MLOT266835 ncbi Mesorhizobium loti MAFF3030994
MFLA265072 ncbi Methylobacillus flagellatus KT4
MEXT419610 ncbi Methylobacterium extorquens PA14
MCAP243233 ncbi Methylococcus capsulatus Bath4
MAQU351348 ncbi Marinobacter aquaeolei VT84
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-003
LCHO395495 ncbi Leptothrix cholodnii SP-64
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785784
JSP375286 ncbi Janthinobacterium sp. Marseille4
ILOI283942 ncbi Idiomarina loihiensis L2TR3
HNEP81032 Hyphomonas neptunium3
HHAL349124 ncbi Halorhodospira halophila SL14
HCHE349521 ncbi Hahella chejuensis KCTC 23964
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237793
HARS204773 ncbi Herminiimonas arsenicoxydans4
GURA351605 ncbi Geobacter uraniireducens Rf44
GSUL243231 ncbi Geobacter sulfurreducens PCA4
GMET269799 ncbi Geobacter metallireducens GS-154
GBET391165 ncbi Granulibacter bethesdensis CGDNIH13
ESP42895 Enterobacter sp.4
ELIT314225 ncbi Erythrobacter litoralis HTCC25943
EFER585054 ncbi Escherichia fergusonii ATCC 354694
ECOO157 ncbi Escherichia coli O157:H7 EDL9334
ECOL83334 Escherichia coli O157:H74
ECOL585397 ncbi Escherichia coli ED1a4
ECOL585057 ncbi Escherichia coli IAI394
ECOL585056 ncbi Escherichia coli UMN0264
ECOL585055 ncbi Escherichia coli 559894
ECOL585035 ncbi Escherichia coli S884
ECOL585034 ncbi Escherichia coli IAI14
ECOL481805 ncbi Escherichia coli ATCC 87394
ECOL469008 ncbi Escherichia coli BL21(DE3)4
ECOL439855 ncbi Escherichia coli SMS-3-54
ECOL413997 ncbi Escherichia coli B str. REL6064
ECOL409438 ncbi Escherichia coli SE114
ECOL405955 ncbi Escherichia coli APEC O14
ECOL364106 ncbi Escherichia coli UTI894
ECOL362663 ncbi Escherichia coli 5364
ECOL331111 ncbi Escherichia coli E24377A4
ECOL316407 ncbi Escherichia coli K-12 substr. W31104
ECOL199310 ncbi Escherichia coli CFT0734
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10434
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough3
DRED349161 ncbi Desulfotomaculum reducens MI-14
DPSY177439 ncbi Desulfotalea psychrophila LSv543
DOLE96561 ncbi Desulfococcus oleovorans Hxd33
DHAF138119 ncbi Desulfitobacterium hafniense Y513
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G203
DARO159087 ncbi Dechloromonas aromatica RCB4
CVIO243365 ncbi Chromobacterium violaceum ATCC 124724
CSP78 Caulobacter sp.4
CSAL290398 ncbi Chromohalobacter salexigens DSM 30433
CPSY167879 ncbi Colwellia psychrerythraea 34H3
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE253
CJAP155077 Cellvibrio japonicus4
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29014
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80523
CAULO ncbi Caulobacter crescentus CB154
BVIE269482 ncbi Burkholderia vietnamiensis G44
BTHA271848 ncbi Burkholderia thailandensis E2644
BSUI204722 ncbi Brucella suis 13303
BSP376 Bradyrhizobium sp.4
BSP36773 Burkholderia sp.4
BPSE320373 ncbi Burkholderia pseudomallei 6684
BPSE320372 ncbi Burkholderia pseudomallei 1710b4
BPSE272560 ncbi Burkholderia pseudomallei K962434
BPET94624 Bordetella petrii4
BPER257313 ncbi Bordetella pertussis Tohama I4
BPAR257311 ncbi Bordetella parapertussis 128224
BOVI236 Brucella ovis3
BMEL359391 ncbi Brucella melitensis biovar Abortus 23083
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M3
BMAL320389 ncbi Burkholderia mallei NCTC 102474
BMAL320388 ncbi Burkholderia mallei SAVP14
BMAL243160 ncbi Burkholderia mallei ATCC 233444
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1103
BHAL272558 ncbi Bacillus halodurans C-1253
BCEN331272 ncbi Burkholderia cenocepacia HI24244
BCEN331271 ncbi Burkholderia cenocepacia AU 10544
BCAN483179 ncbi Brucella canis ATCC 233653
BBRO257310 ncbi Bordetella bronchiseptica RB504
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1004
BAMB398577 ncbi Burkholderia ambifaria MC40-64
BAMB339670 ncbi Burkholderia ambifaria AMMD4
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9413
ASP76114 ncbi Aromatoleum aromaticum EbN14
ASP62977 ncbi Acinetobacter sp. ADP14
ASP62928 ncbi Azoarcus sp. BH724
ASP232721 ncbi Acidovorax sp. JS424
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4494
AORE350688 ncbi Alkaliphilus oremlandii OhILAs3
AMET293826 ncbi Alkaliphilus metalliredigens QYMF3
AHYD196024 Aeromonas hydrophila dhakensis4
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232704
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-14
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C4
ACRY349163 ncbi Acidiphilium cryptum JF-53
ACAU438753 ncbi Azorhizobium caulinodans ORS 5714
ABOR393595 ncbi Alcanivorax borkumensis SK24
ABAU360910 ncbi Bordetella avium 197N4
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3453
AAVE397945 ncbi Acidovorax citrulli AAC00-14
AAEO224324 ncbi Aquifex aeolicus VF53


Names of the homologs of the genes in the group in each of these orgs
  EG11668   EG10387   EG10385   EG10383   
YPSE349747 YPSIP31758_2820YPSIP31758_0026YPSIP31758_0025YPSIP31758_0027
YPSE273123 YPTB1205YPTB0023YPTB0022YPTB0024
YPES386656 YPDSF_3882YPDSF_3881YPDSF_3882YPDSF_3880
YPES377628 YPN_2824YPN_0250YPN_0249YPN_0251
YPES360102 YPA_1085YPA_3519YPA_3520YPA_3517
YPES349746 YPANGOLA_A0027YPANGOLA_A0028YPANGOLA_A0027YPANGOLA_A0030
YPES214092 YPO0022YPO0023YPO0022YPO0024
YPES187410 Y3806Y3805Y3806Y3804
YENT393305 YE0025YE0026YE0025YE0027
XORY360094 XOOORF_0605XOOORF_0296XOOORF_0297XOOORF_0293
XORY342109 XOO3971XOO4225XOO4224XOO4228
XORY291331 XOO4202XOO4484XOO4483XOO4488
XFAS405440 XFASM12_1118XFASM12_1119XFASM12_1124
XFAS183190 PD_1020PD_1021PD_1026
XFAS160492 XF1849XF1848XF1842
XCAM487884 XCC-B100_0208XCC-B100_0209XCC-B100_0205
XCAM316273 XCAORF_4341XCAORF_4340XCAORF_4344
XCAM314565 XC_0197XC_0198XC_0194
XCAM190485 XCC0188XCC0189XCC0185
XAXO190486 XAC0226XAC0207XAC0208XAC0204
XAUT78245 XAUT_1032XAUT_4400XAUT_4399XAUT_3585
VVUL216895 VV1_0891VV1_0892VV1_0889
VVUL196600 VV0197VV0196VV0199
VPAR223926 VP0119VP0118VP0121
VFIS312309 VF0096VF0095VF0098
VEIS391735 VEIS_3151VEIS_3152VEIS_3151VEIS_3154
VCHO345073 VC0395_A2321VC0395_A2320VC0395_A2321VC0395_A2318
VCHO VC2749VC2748VC2749VC2746
TTUR377629 TERTU_4424TERTU_4423TERTU_4424TERTU_4421
TDEN292415 TBD_2500TBD_2501TBD_2500TBD_2503
TCRU317025 TCR_0905TCR_0906TCR_0536
STYP99287 STM4005STM4006STM4005STM4007
STHE292459 STH2087STH2087STH198
SSP94122 SHEWANA3_0259SHEWANA3_0258SHEWANA3_0300
SSON300269 SSO_2279SSO_4041SSO_4040SSO_4042
SSED425104 SSED_0283SSED_0282SSED_0292
SPRO399741 SPRO_4883SPRO_4882SPRO_4883SPRO_4881
SPEA398579 SPEA_3929SPEA_3930SPEA_3916
SONE211586 SO_4471SO_4472SO_4410
SMEL266834 SMC04011SMC01042SMC01043SMC00948
SMED366394 SMED_2683SMED_1089SMED_1090SMED_1389
SLOI323850 SHEW_3560SHEW_3561SHEW_3554
SHIGELLA HYDGGLNLGLNGGLNA
SHAL458817 SHAL_0342SHAL_0341SHAL_0353
SGLO343509 SG2232SG2231SG2232SG2230
SFUM335543 SFUM_0853SFUM_0854SFUM_1934SFUM_0576
SFLE373384 SFV_4076SFV_3632SFV_3633SFV_3631
SFLE198214 AAN45505.1AAN45374.1AAN45373.1AAN45375.1
SENT454169 SEHA_C4333SEHA_C4334SEHA_C4333SEHA_C4335
SENT321314 SCH_3897SCH_3898SCH_3897SCH_3899
SENT295319 SPA3846SPA3847SPA3846SPA3848
SENT220341 STY3876STY3875STY3876STY3874
SENT209261 T3616T3615T3616T3614
SDYS300267 SDY_3722SDY_3874SDY_3875SDY_3873
SDEN318161 SDEN_3457SDEN_3458SDEN_3454
SDEG203122 SDE_0499SDE_0500SDE_0499SDE_0502
SBOY300268 SBO_3880SBO_3881SBO_3880SBO_3882
SBAL402882 SHEW185_0259SHEW185_0258SHEW185_0307
SBAL399599 SBAL195_0267SBAL195_0266SBAL195_0311
SALA317655 SALA_1276SALA_1275SALA_0149
SACI56780 SYN_02214SYN_02215SYN_00973
RSOL267608 RSC1261RSC1260RSC1261RSP0886
RRUB269796 RRU_A1385RRU_A1677RRU_A1678RRU_A2086
RPAL316058 RPB_2883RPB_2882RPB_2558
RPAL316057 RPD_2589RPD_2590RPD_2901
RPAL316056 RPC_0827RPC_2577RPC_2578RPC_2386
RPAL316055 RPE_2757RPE_2758RPE_2505
RPAL258594 RPA2592RPA2593RPA2967
RMET266264 RMET_2059RMET_2060RMET_2059RMET_2062
RLEG216596 RL2256RL2257RL2392
RFER338969 RFER_2741RFER_2981RFER_2982RFER_2979
REUT381666 H16_A2332H16_A2333H16_A2332H16_A2335
REUT264198 REUT_A2054REUT_A2055REUT_A2054REUT_A2057
RETL347834 RHE_CH01947RHE_CH01948RHE_CH02102
PTHE370438 PTH_2258PTH_1422PTH_2258PTH_0909
PSYR223283 PSPTO_1956PSPTO_0353PSPTO_0352PSPTO_0359
PSYR205918 PSYR_4821PSYR_4822PSYR_4817
PSTU379731 PST_3646PST_0350PST_0349PST_0353
PSP56811 PSYCPRWF_1805PSYCPRWF_1804PSYCPRWF_1805PSYCPRWF_1645
PSP312153 PNUC_1254PNUC_1253PNUC_1255
PSP296591 BPRO_1810BPRO_1809BPRO_1810BPRO_1807
PPUT76869 PPUTGB1_5101PPUTGB1_5100PPUTGB1_5101PPUTGB1_5098
PPUT351746 PPUT_4923PPUT_4922PPUT_4923PPUT_4920
PPUT160488 PP_5048PP_5047PP_5048PP_5046
PPRO298386 PBPRA3495PBPRA3494PBPRA3495PBPRA3492
PNAP365044 PNAP_2777PNAP_2778PNAP_2777PNAP_2780
PMEN399739 PMEN_0965PMEN_4143PMEN_4144PMEN_4140
PLUM243265 PLU0235PLU0236PLU0235PLU0237
PING357804 PING_3487PING_3488PING_3484
PHAL326442 PSHAA0163PSHAA0164PSHAA0163PSHAA0166
PFLU220664 PFL_4888PFL_0378PFL_0377PFL_0386
PFLU216595 PFLU1132PFLU0344PFLU0343PFLU0348
PFLU205922 PFL_0339PFL_0340PFL_0339PFL_0344
PENT384676 PSEEN0386PSEEN0387PSEEN0386PSEEN0390
PCRY335284 PCRYO_1716PCRYO_1717PCRYO_1440
PCAR338963 PCAR_2345PCAR_1993PCAR_1994PCAR_1501
PATL342610 PATL_1028PATL_1027PATL_1028PATL_1025
PAER208964 PA5125PA5124PA5125PA5119
PAER208963 PA14_67680PA14_67670PA14_67680PA14_67600
OCAR504832 OCAR_6095OCAR_6096OCAR_5901
OANT439375 OANT_2071OANT_2072OANT_2087
NWIN323098 NWI_0992NWI_1444NWI_1445NWI_1904
NHAM323097 NHAM_1836NHAM_1837NHAM_2234
NARO279238 SARO_2047SARO_1927SARO_1928SARO_1108
MXAN246197 MXAN_5777MXAN_3343MXAN_1128
MSP409 M446_5929M446_5930M446_6588
MSP400668 MMWYL1_0734MMWYL1_0735MMWYL1_0734MMWYL1_0736
MSP266779 MESO_2731MESO_1619MESO_1618MESO_1544
MPET420662 MPE_A2073MPE_A2074MPE_A2073MPE_A2076
MMAR394221 MMAR10_2539MMAR10_1441MMAR10_2539MMAR10_1330
MMAG342108 AMB2366AMB2367AMB0696
MLOT266835 MLL3001MLR0397MLR0398MLL0343
MFLA265072 MFLA_2450MFLA_2449MFLA_2450MFLA_2447
MEXT419610 MEXT_2753MEXT_2819MEXT_2820MEXT_2377
MCAP243233 MCA_2541MCA_2542MCA_2541MCA_1677
MAQU351348 MAQU_0766MAQU_0767MAQU_0766MAQU_0769
LINT363253 LI0877LI1078LI0877
LCHO395495 LCHO_4117LCHO_3583LCHO_3584LCHO_3581
KPNE272620 GKPORF_B3739GKPORF_B3518GKPORF_B3517GKPORF_B3519
JSP375286 MMA_1081MMA_1080MMA_1081MMA_1078
ILOI283942 IL2436IL2435IL2437
HNEP81032 HNE_3039HNE_2012HNE_2084
HHAL349124 HHAL_1215HHAL_1216HHAL_1215HHAL_1582
HCHE349521 HCH_05925HCH_01034HCH_01033HCH_01036
HAUR316274 HAUR_0838HAUR_4259HAUR_0838
HARS204773 HEAR0951HEAR0950HEAR0951HEAR0948
GURA351605 GURA_2678GURA_0915GURA_0916GURA_2228
GSUL243231 GSU_2041GSU_1004GSU_1003GSU_1835
GMET269799 GMET_1397GMET_2562GMET_2563GMET_1352
GBET391165 GBCGDNIH1_1227GBCGDNIH1_1226GBCGDNIH1_0957
ESP42895 ENT638_4098ENT638_4097ENT638_4098ENT638_4096
ELIT314225 ELI_06280ELI_06275ELI_01660
EFER585054 EFER_3750EFER_3904EFER_3905EFER_3903
ECOO157 HYDGGLNLGLNGGLNA
ECOL83334 ECS4927ECS4791ECS4790ECS4792
ECOL585397 ECED1_2686ECED1_4570ECED1_4569ECED1_4571
ECOL585057 ECIAI39_2358ECIAI39_3132ECIAI39_3133ECIAI39_3131
ECOL585056 ECUMN_2558ECUMN_4392ECUMN_4391ECUMN_4393
ECOL585055 EC55989_4489EC55989_4344EC55989_4343EC55989_4345
ECOL585035 ECS88_2369ECS88_4319ECS88_4318ECS88_4320
ECOL585034 ECIAI1_4219ECIAI1_4068ECIAI1_4067ECIAI1_4069
ECOL481805 ECOLC_1430ECOLC_4147ECOLC_4148ECOLC_4146
ECOL469008 ECBD_1439ECBD_4158ECBD_4159ECBD_4157
ECOL439855 ECSMS35_2369ECSMS35_4254ECSMS35_4253ECSMS35_4255
ECOL413997 ECB_02147ECB_03754ECB_03753ECB_03755
ECOL409438 ECSE_4293ECSE_4152ECSE_4151ECSE_4153
ECOL405955 APECO1_4339APECO1_2593APECO1_2594APECO1_2592
ECOL364106 UTI89_C2502UTI89_C4458UTI89_C4457UTI89_C4459
ECOL362663 ECP_2263ECP_4080ECP_4079ECP_4081
ECOL331111 ECE24377A_4549ECE24377A_4391ECE24377A_4390ECE24377A_4392
ECOL316407 ECK2213:JW2214:B2220ECK3862:JW3840:B3869ECK3861:JW3839:B3868ECK3863:JW3841:B3870
ECOL199310 C2763C4818C4817C4819
ECAR218491 ECA0027ECA0028ECA0027ECA0029
DVUL882 DVU_3220DVU_3382DVU_3220
DRED349161 DRED_1312DRED_2000DRED_2001DRED_2807
DPSY177439 DP0376DP2891DP0376
DOLE96561 DOLE_2807DOLE_0426DOLE_0427
DHAF138119 DSY0252DSY4412DSY0252
DDES207559 DDE_3599DDE_0110DDE_3599
DARO159087 DARO_2923DARO_3759DARO_3758DARO_3763
CVIO243365 CV_3592CV_3591CV_3592CV_3589
CSP78 CAUL_0879CAUL_2605CAUL_0879CAUL_2853
CSAL290398 CSAL_0245CSAL_0246CSAL_0243
CPSY167879 CPS_0398CPS_0397CPS_0400
CPRO264201 PC1364PC1365PC1364
CJAP155077 CJA_3537CJA_3536CJA_3537CJA_3534
CHYD246194 CHY_1855CHY_2022CHY_1855CHY_0704
CBEI290402 CBEI_3816CBEI_3818CBEI_4206
CAULO CC3315CC1740CC3315CC1969
BVIE269482 BCEP1808_2226BCEP1808_2227BCEP1808_2226BCEP1808_2228
BTHA271848 BTH_I1846BTH_I1845BTH_I1846BTH_I1844
BSUI204722 BR_1118BR_1117BR_1004
BSP376 BRADO3244BRADO3867BRADO3866BRADO4205
BSP36773 BCEP18194_A5456BCEP18194_A5457BCEP18194_A5456BCEP18194_A5458
BPSE320373 BURPS668_2632BURPS668_2633BURPS668_2632BURPS668_2634
BPSE320372 BURPS1710B_A2999BURPS1710B_A3000BURPS1710B_A2999BURPS1710B_A3001
BPSE272560 BPSL2316BPSL2317BPSL2316BPSL2318
BPET94624 BPET2276BPET2275BPET2276BPET2274
BPER257313 BP1598BP1597BP1598BP1596
BPAR257311 BPP2986BPP2987BPP2986BPP2988
BOVI236 GBOORF1118GBOORF1117GBOORF1000
BMEL359391 BAB1_1141BAB1_1140BAB1_1023
BMEL224914 BMEI0865BMEI0866BMEI0979
BMAL320389 BMA10247_1522BMA10247_1523BMA10247_1522BMA10247_1524
BMAL320388 BMASAVP1_A2250BMASAVP1_A2251BMASAVP1_A2250BMASAVP1_A2253
BMAL243160 BMA_1740BMA_1741BMA_1740BMA_1743
BJAP224911 BLR4487BLR4488BLR4949
BHAL272558 BH2948BH1802BH2360
BCEN331272 BCEN2424_2147BCEN2424_2148BCEN2424_2147BCEN2424_2149
BCEN331271 BCEN_5930BCEN_5929BCEN_5930BCEN_5928
BCAN483179 BCAN_A1137BCAN_A1136BCAN_A1020
BBRO257310 BB2952BB2953BB2952BB2954
BBAC264462 BD1513BD3036BD3432BD0267
BAMB398577 BAMMC406_2057BAMMC406_2058BAMMC406_2057BAMMC406_2059
BAMB339670 BAMB_2184BAMB_2185BAMB_2184BAMB_2186
BABO262698 BRUAB1_1124BRUAB1_1123BRUAB1_1009
ASP76114 EBA4116EBA4117EBA4116EBA4121
ASP62977 ACIAD1368ACIAD1369ACIAD1368ACIAD2458
ASP62928 AZO0735AZO0736AZO0735AZO0738
ASP232721 AJS_1192AJS_1191AJS_1192AJS_1189
ASAL382245 ASA_4123ASA_4122ASA_4123ASA_4120
AORE350688 CLOS_1079CLOS_1078CLOS_1079
AMET293826 AMET_3255AMET_3256AMET_3255
AHYD196024 AHA_0274AHA_0275AHA_0274AHA_0277
AFER243159 AFE_2997AFE_0207AFE_0208AFE_2571
AEHR187272 MLG_0016MLG_0015MLG_0016MLG_0013
ADEH290397 ADEH_1555ADEH_1907ADEH_0922ADEH_4252
ACRY349163 ACRY_2033ACRY_2034ACRY_3057
ACAU438753 AZC_1653AZC_3087AZC_3086AZC_1601
ABOR393595 ABO_2259ABO_2260ABO_2259ABO_2262
ABAU360910 BAV1929BAV1930BAV1929BAV1931
ABAC204669 ACID345_0751ACID345_0750ACID345_1734
AAVE397945 AAVE_1445AAVE_1444AAVE_1445AAVE_1442
AAEO224324 AQ_1117AQ_1117AQ_111


Organism features enriched in list (features available for 201 out of the 214 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 9.380e-81192
Disease:Bubonic_plague 0.001598366
Disease:Dysentery 0.001598366
Disease:Gastroenteritis 0.00172641013
Endospores:No 2.135e-1039211
Endospores:Yes 0.0006473853
GC_Content_Range4:0-40 5.331e-407213
GC_Content_Range4:40-60 2.864e-9110224
GC_Content_Range4:60-100 1.198e-1184145
GC_Content_Range7:0-30 2.317e-8147
GC_Content_Range7:30-40 3.394e-286166
GC_Content_Range7:50-60 1.451e-1269107
GC_Content_Range7:60-70 6.637e-1483134
Genome_Size_Range5:0-2 2.586e-312155
Genome_Size_Range5:2-4 0.000017146197
Genome_Size_Range5:4-6 1.405e-27122184
Genome_Size_Range5:6-10 3.406e-63147
Genome_Size_Range9:1-2 1.841e-242128
Genome_Size_Range9:2-3 2.549e-1014120
Genome_Size_Range9:4-5 2.158e-95996
Genome_Size_Range9:5-6 9.348e-156388
Genome_Size_Range9:6-8 3.283e-72838
Gram_Stain:Gram_Neg 1.356e-32179333
Gram_Stain:Gram_Pos 3.334e-246150
Habitat:Host-associated 0.000304253206
Habitat:Multiple 0.000317179178
Habitat:Specialized 0.00460581053
Motility:No 2.746e-1515151
Motility:Yes 1.167e-13134267
Optimal_temp.:25-30 6.747e-71719
Optimal_temp.:37 0.002771925106
Oxygen_Req:Anaerobic 2.501e-616102
Oxygen_Req:Facultative 0.000014592201
Pathogenic_in:Human 0.005693561213
Pathogenic_in:Plant 0.00183901115
Shape:Coccus 5.517e-9782
Shape:Rod 2.966e-18167347
Shape:Sphere 0.0029072119
Shape:Spiral 0.0016352434
Temp._range:Hyperthermophilic 0.0036992223
Temp._range:Mesophilic 0.0024018175473
Temp._range:Psychrophilic 0.001087889
Temp._range:Thermophilic 0.0002623335



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 363
Effective number of orgs (counting one per cluster within 468 clusters): 276

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM41
WSUC273121 ncbi Wolinella succinogenes DSM 17401
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I1
TWHI218496 ncbi Tropheryma whipplei TW08/271
TWHI203267 ncbi Tropheryma whipplei Twist1
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTHE300852 ncbi Thermus thermophilus HB80
TTHE262724 ncbi Thermus thermophilus HB270
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB40
TSP28240 Thermotoga sp.1
TSP1755 Thermoanaerobacter sp.1
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332231
TPET390874 ncbi Thermotoga petrophila RKU-11
TPEN368408 ncbi Thermofilum pendens Hrk 50
TMAR243274 ncbi Thermotoga maritima MSB81
TLET416591 ncbi Thermotoga lettingae TMO1
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TFUS269800 ncbi Thermobifida fusca YX1
TERY203124 ncbi Trichodesmium erythraeum IMS1011
TELO197221 ncbi Thermosynechococcus elongatus BP-11
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12511
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen1
STRO369723 ncbi Salinispora tropica CNB-4401
STOK273063 ncbi Sulfolobus tokodaii 71
STHE322159 ncbi Streptococcus thermophilus LMD-90
STHE299768 ncbi Streptococcus thermophilus CNRZ10660
STHE264199 ncbi Streptococcus thermophilus LMG 183110
SSUI391296 ncbi Streptococcus suis 98HAH330
SSUI391295 ncbi Streptococcus suis 05ZYH330
SSP84588 ncbi Synechococcus sp. WH 81021
SSP64471 ncbi Synechococcus sp. CC93111
SSP387093 ncbi Sulfurovum sp. NBC37-11
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)1
SSP321327 ncbi Synechococcus sp. JA-3-3Ab1
SSP1148 ncbi Synechocystis sp. PCC 68031
SSP1131 Synechococcus sp. CC96051
SSOL273057 ncbi Sulfolobus solfataricus P21
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153050
SRUB309807 ncbi Salinibacter ruber DSM 138551
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370552 ncbi Streptococcus pyogenes MGAS102700
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103940
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SPNE488221 ncbi Streptococcus pneumoniae 705850
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-60
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-140
SPNE171101 ncbi Streptococcus pneumoniae R60
SPNE170187 ncbi Streptococcus pneumoniae G540
SPNE1313 Streptococcus pneumoniae0
SMUT210007 ncbi Streptococcus mutans UA1590
SMAR399550 ncbi Staphylothermus marinus F10
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14350
SGOR29390 Streptococcus gordonii Challis0
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23381
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122280
SEPI176279 ncbi Staphylococcus epidermidis RP62A0
SELO269084 ncbi Synechococcus elongatus PCC 63011
SCO ncbi Streptomyces coelicolor A3(2)1
SAVE227882 ncbi Streptomyces avermitilis MA-46801
SAUR93062 ncbi Staphylococcus aureus aureus COL0
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83250
SAUR426430 ncbi Staphylococcus aureus aureus Newman0
SAUR418127 ncbi Staphylococcus aureus aureus Mu30
SAUR367830 Staphylococcus aureus aureus USA3000
SAUR359787 ncbi Staphylococcus aureus aureus JH10
SAUR359786 ncbi Staphylococcus aureus aureus JH90
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4760
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2520
SAUR273036 ncbi Staphylococcus aureus RF1220
SAUR196620 ncbi Staphylococcus aureus aureus MW20
SAUR158879 ncbi Staphylococcus aureus aureus N3150
SAUR158878 ncbi Staphylococcus aureus aureus Mu500
SARE391037 ncbi Salinispora arenicola CNS-2051
SAGA211110 ncbi Streptococcus agalactiae NEM3160
SAGA208435 ncbi Streptococcus agalactiae 2603V/R0
SAGA205921 ncbi Streptococcus agalactiae A9090
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6391
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99410
RTYP257363 ncbi Rickettsia typhi Wilmington0
RSP101510 ncbi Rhodococcus jostii RHA11
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332091
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RMAS416276 ncbi Rickettsia massiliae MTU50
RFEL315456 ncbi Rickettsia felis URRWXCal20
RCON272944 ncbi Rickettsia conorii Malish 70
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RALB246199 Ruminococcus albus 80
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97900
PRUM264731 ncbi Prevotella ruminicola 230
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257450
PMUL272843 ncbi Pasteurella multocida multocida Pm701
PMOB403833 ncbi Petrotoga mobilis SJ951
PMAR93060 ncbi Prochlorococcus marinus MIT 92151
PMAR74547 ncbi Prochlorococcus marinus MIT 93131
PMAR74546 ncbi Prochlorococcus marinus MIT 93121
PMAR59920 ncbi Prochlorococcus marinus NATL2A1
PMAR167555 ncbi Prochlorococcus marinus NATL1A1
PMAR167546 ncbi Prochlorococcus marinus MIT 93011
PMAR167542 ncbi Prochlorococcus marinus MIT 95151
PMAR167540 Prochlorococcus marinus pastoris MED4ax1
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13751
PMAR146891 ncbi Prochlorococcus marinus AS96011
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 170
PHOR70601 ncbi Pyrococcus horikoshii OT31
PGIN242619 ncbi Porphyromonas gingivalis W830
PFUR186497 ncbi Pyrococcus furiosus DSM 36381
PDIS435591 ncbi Parabacteroides distasonis ATCC 85031
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PAER178306 ncbi Pyrobaculum aerophilum IM20
PACN267747 ncbi Propionibacterium acnes KPA1712021
PABY272844 ncbi Pyrococcus abyssi GE51
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
OIHE221109 ncbi Oceanobacillus iheyensis HTE8311
NSP387092 ncbi Nitratiruptor sp. SB155-21
NSP35761 Nocardioides sp.1
NSP103690 ncbi Nostoc sp. PCC 71201
NSEN222891 ncbi Neorickettsia sennetsu Miyayama1
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
NMUL323848 ncbi Nitrosospira multiformis ATCC 251961
NMEN374833 ncbi Neisseria meningitidis 0534421
NMEN272831 ncbi Neisseria meningitidis FAM181
NMEN122587 ncbi Neisseria meningitidis Z24911
NMEN122586 ncbi Neisseria meningitidis MC581
NGON242231 ncbi Neisseria gonorrhoeae FA 10901
NFAR247156 ncbi Nocardia farcinica IFM 101521
NEUR228410 ncbi Nitrosomonas europaea ATCC 197181
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-11
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra1
MTUB336982 ncbi Mycobacterium tuberculosis F111
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H1
MTBRV ncbi Mycobacterium tuberculosis H37Rv1
MTBCDC ncbi Mycobacterium tuberculosis CDC15511
MSYN262723 ncbi Mycoplasma synoviae 530
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E1
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30911
MSP189918 ncbi Mycobacterium sp. KMS1
MSP164757 ncbi Mycobacterium sp. JLS1
MSP164756 ncbi Mycobacterium sp. MCS1
MSME246196 ncbi Mycobacterium smegmatis MC2 1551
MSED399549 ncbi Metallosphaera sedula DSM 53481
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go11
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR368407 ncbi Methanoculleus marisnigri JR11
MMAR267377 ncbi Methanococcus maripaludis S20
MLEP272631 ncbi Mycobacterium leprae TN1
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV191
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26611
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-11
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK1
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBUR259564 ncbi Methanococcoides burtonii DSM 62421
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P21
MBOV233413 ncbi Mycobacterium bovis AF2122/971
MBAR269797 ncbi Methanosarcina barkeri Fusaro1
MAVI243243 ncbi Mycobacterium avium 1041
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAER449447 ncbi Microcystis aeruginosa NIES-8431
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A1
MABS561007 ncbi Mycobacterium abscessus ATCC 199771
LXYL281090 ncbi Leifsonia xyli xyli CTCB071
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53340
LSPH444177 ncbi Lysinibacillus sphaericus C3-411
LSAK314315 ncbi Lactobacillus sakei sakei 23K0
LREU557436 ncbi Lactobacillus reuteri DSM 200160
LPNE400673 ncbi Legionella pneumophila Corby1
LPNE297246 ncbi Legionella pneumophila Paris1
LPNE297245 ncbi Legionella pneumophila Lens1
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 11
LPLA220668 ncbi Lactobacillus plantarum WCFS10
LMON265669 ncbi Listeria monocytogenes 4b F23651
LMON169963 ncbi Listeria monocytogenes EGD-e1
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82930
LLAC272623 ncbi Lactococcus lactis lactis Il14030
LLAC272622 ncbi Lactococcus lactis cremoris SK110
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LINN272626 ncbi Listeria innocua Clip112620
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LCAS321967 ncbi Lactobacillus casei ATCC 3340
LBRE387344 ncbi Lactobacillus brevis ATCC 3671
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1971
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5501
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)1
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)1
LACI272621 ncbi Lactobacillus acidophilus NCFM0
KRAD266940 ncbi Kineococcus radiotolerans SRS302161
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I1
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSOM228400 ncbi Haemophilus somnus 23361
HSOM205914 ncbi Haemophilus somnus 129PT1
HSAL478009 ncbi Halobacterium salinarum R10
HPYL85963 ncbi Helicobacter pylori J991
HPYL357544 ncbi Helicobacter pylori HPAG11
HPY ncbi Helicobacter pylori 266951
HMUK485914 ncbi Halomicrobium mukohataei DSM 122861
HMAR272569 ncbi Haloarcula marismortui ATCC 430490
HINF71421 ncbi Haemophilus influenzae Rd KW201
HINF374930 ncbi Haemophilus influenzae PittEE0
HINF281310 ncbi Haemophilus influenzae 86-028NP1
HHEP235279 ncbi Helicobacter hepaticus ATCC 514491
HDUC233412 ncbi Haemophilus ducreyi 35000HP1
HBUT415426 ncbi Hyperthermus butylicus DSM 54561
HACI382638 ncbi Helicobacter acinonychis Sheeba1
GVIO251221 ncbi Gloeobacter violaceus PCC 74211
GOXY290633 ncbi Gluconobacter oxydans 621H1
GFOR411154 ncbi Gramella forsetii KT08030
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-000
FTUL418136 ncbi Francisella tularensis tularensis WY96-34180
FTUL401614 ncbi Francisella novicida U1120
FTUL393115 ncbi Francisella tularensis tularensis FSC1980
FTUL393011 ncbi Francisella tularensis holarctica OSU180
FTUL351581 Francisella tularensis holarctica FSC2000
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S850
FSP1855 Frankia sp. EAN1pec1
FSP106370 ncbi Frankia sp. CcI31
FRANT ncbi Francisella tularensis tularensis SCHU S40
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250170
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255860
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B11
FMAG334413 ncbi Finegoldia magna ATCC 293280
FJOH376686 ncbi Flavobacterium johnsoniae UW1010
FALN326424 ncbi Frankia alni ACN14a1
ERUM302409 ncbi Ehrlichia ruminantium Gardel1
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden1
EFAE226185 ncbi Enterococcus faecalis V5831
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas1
ECAN269484 ncbi Ehrlichia canis Jake1
DSP255470 ncbi Dehalococcoides sp. CBDB11
DSP216389 ncbi Dehalococcoides sp. BAV10
DRAD243230 ncbi Deinococcus radiodurans R10
DNOD246195 ncbi Dichelobacter nodosus VCS1703A1
DGEO319795 ncbi Deinococcus geothermalis DSM 113001
DETH243164 ncbi Dehalococcoides ethenogenes 1951
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA1
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTET212717 ncbi Clostridium tetani E881
CTEP194439 ncbi Chlorobium tepidum TLS0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)1
CPNE182082 ncbi Chlamydophila pneumoniae TW-1831
CPNE138677 ncbi Chlamydophila pneumoniae J1381
CPNE115713 ncbi Chlamydophila pneumoniae CWL0291
CPNE115711 ncbi Chlamydophila pneumoniae AR391
CPHY357809 ncbi Clostridium phytofermentans ISDg0
CPER289380 ncbi Clostridium perfringens SM1010
CPER195103 ncbi Clostridium perfringens ATCC 131240
CPER195102 ncbi Clostridium perfringens 130
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10621
CNOV386415 ncbi Clostridium novyi NT0
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3821
CMIC31964 ncbi Clavibacter michiganensis sepedonicus1
CMET456442 ncbi Candidatus Methanoregula boonei 6A81
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CKLU431943 ncbi Clostridium kluyveri DSM 5550
CJEJ407148 ncbi Campylobacter jejuni jejuni 811161
CJEJ360109 ncbi Campylobacter jejuni doylei 269.971
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1761
CJEJ195099 ncbi Campylobacter jejuni RM12211
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111681
CJEI306537 ncbi Corynebacterium jeikeium K4111
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334060
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3811
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130321
CFET360106 ncbi Campylobacter fetus fetus 82-401
CFEL264202 ncbi Chlamydophila felis Fe/C-561
CEFF196164 ncbi Corynebacterium efficiens YS-3141
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131291
CDIF272563 ncbi Clostridium difficile 6300
CCUR360105 ncbi Campylobacter curvus 525.921
CCON360104 ncbi Campylobacter concisus 138261
CCHL340177 ncbi Chlorobium chlorochromatii CaD30
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1110
CBUR360115 ncbi Coxiella burnetii RSA 3310
CBUR227377 ncbi Coxiella burnetii RSA 4930
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto0
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6570
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B0
CBOT498213 ncbi Clostridium botulinum B1 str. Okra0
CBOT441772 ncbi Clostridium botulinum F str. Langeland0
CBOT441771 ncbi Clostridium botulinum A str. Hall0
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193970
CBOT36826 Clostridium botulinum A0
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN1
CBLO203907 ncbi Candidatus Blochmannia floridanus1
CACE272562 ncbi Clostridium acetobutylicum ATCC 8240
CABO218497 ncbi Chlamydophila abortus S26/30
BXEN266265 ncbi Burkholderia xenovorans LB4000
BWEI315730 ncbi Bacillus weihenstephanensis KBAB41
BTUR314724 ncbi Borrelia turicatae 91E1351
BTRI382640 ncbi Bartonella tribocorum CIP 1054761
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54821
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)0
BQUI283165 ncbi Bartonella quintana Toulouse1
BLON206672 ncbi Bifidobacterium longum NCC27051
BHEN283166 ncbi Bartonella henselae Houston-11
BFRA295405 ncbi Bacteroides fragilis YCH461
BFRA272559 ncbi Bacteroides fragilis NCTC 93430
BCLA66692 ncbi Bacillus clausii KSM-K161
BCIC186490 Candidatus Baumannia cicadellinicola0
BCER226900 ncbi Bacillus cereus ATCC 145791
BBAC360095 ncbi Bartonella bacilliformis KC5831
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)0
BANT592021 ncbi Bacillus anthracis A02481
BANT261594 ncbi Bacillus anthracis Ames Ancestor1
BANT260799 ncbi Bacillus anthracis Sterne1
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP1667 Arthrobacter sp.1
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL031
APLE416269 ncbi Actinobacillus pleuropneumoniae L201
APHA212042 ncbi Anaplasma phagocytophilum HZ1
APER272557 ncbi Aeropyrum pernix K10
ANAE240017 Actinomyces oris MG11
AMAR329726 ncbi Acaryochloris marina MBIC110171
AMAR234826 ncbi Anaplasma marginale St. Maries1
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43041
ACEL351607 ncbi Acidothermus cellulolyticus 11B1
ABUT367737 ncbi Arcobacter butzleri RM40181
AAUR290340 ncbi Arthrobacter aurescens TC11


Names of the homologs of the genes in the group in each of these orgs
  EG11668   EG10387   EG10385   EG10383   
ZMOB264203 ZMO0493
WSUC273121 WS2124
WPIP955
WPIP80849
UURE95667
UURE95664
UPAR505682
UMET351160 RCIX649
TWHI218496 TW0483
TWHI203267 TW261
TVOL273116
TTHE300852
TTHE262724
TTEN273068
TSP28240 TRQ2_1837
TSP1755 TETH514_2178
TPSE340099 TETH39_1496
TPET390874 TPET_1799
TPEN368408
TMAR243274 TM_0943
TLET416591 TLET_0896
TKOD69014
TFUS269800 TFU_0988
TERY203124 TERY_3834
TELO197221 TLL1588
TDEN326298 TMDEN_1889
TACI273075
SWOL335541 SWOL_1787
STRO369723 STROP_3332
STOK273063 ST1387
STHE322159
STHE299768
STHE264199
SSUI391296
SSUI391295
SSP84588 SYNW1073OR3495
SSP64471 GSYN1681
SSP387093 SUN_0353
SSP321332 CYB_2804
SSP321327 CYA_1363
SSP1148 SLR1756
SSP1131 SYNCC9605_1205
SSOL273057 SSO0366
SSAP342451
SRUB309807 SRU_1202
SPYO370554
SPYO370553
SPYO370552
SPYO370551
SPYO319701
SPYO293653
SPYO286636
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SPNE488221
SPNE487214
SPNE487213
SPNE171101
SPNE170187
SPNE1313
SMUT210007
SMAR399550
SHAE279808
SGOR29390
SERY405948 SACE_1623
SEPI176280
SEPI176279
SELO269084 SYC1938_D
SCO SCO2198
SAVE227882 SAV6005
SAUR93062
SAUR93061
SAUR426430
SAUR418127
SAUR367830
SAUR359787
SAUR359786
SAUR282459
SAUR282458
SAUR273036
SAUR196620
SAUR158879
SAUR158878
SARE391037 SARE_3568
SAGA211110
SAGA208435
SAGA205921
SACI330779 SACI_1483
RXYL266117
RTYP257363
RSP101510 RHA1_RO01157
RSAL288705 RSAL33209_2447
RRIC452659
RRIC392021
RPRO272947
RMAS416276
RFEL315456
RCON272944
RCAN293613
RBEL391896
RBEL336407
RALB246199
RAKA293614
PTOR263820
PRUM264731
PPEN278197
PMUL272843 PM1175
PMOB403833 PMOB_1793
PMAR93060 P9215_09701
PMAR74547 PMT0601
PMAR74546 PMT9312_0880
PMAR59920 PMN2A_0141
PMAR167555 NATL1_07731
PMAR167546 P9301ORF_0956
PMAR167542 P9515ORF_1051
PMAR167540 PMM0920
PMAR167539 PRO_1038
PMAR146891 A9601_09401
PISL384616
PINT246198
PHOR70601 PH0359
PGIN242619
PFUR186497 PF0450
PDIS435591 BDI_0114
PAST100379
PARS340102
PAER178306
PACN267747 PPA0671
PABY272844 PAB1292
OTSU357244
OIHE221109 OB1680
NSP387092 NIS_1519
NSP35761 NOCA_2295
NSP103690 ALR2328
NSEN222891 NSE_0350
NPHA348780
NMUL323848 NMUL_A2288
NMEN374833 NMCC_1782
NMEN272831 NMC1809
NMEN122587 NMA2128
NMEN122586 NMB_0359
NGON242231 NGO1600
NFAR247156 NFA16670
NEUR228410 NE0504
MVAN350058 MVAN_3585
MTUB419947 MRA_2237
MTUB336982 TBFG_12249
MTHE349307
MTHE187420 MTH1570
MTBRV RV2220
MTBCDC MT2278
MSYN262723
MSUC221988 MS0262
MSTA339860 MSP_0234
MSP189918 MKMS_3382
MSP164757 MJLS_3331
MSP164756 MMCS_3320
MSME246196 MSMEG_4290
MSED399549 MSED_1612
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAZ192952 MM0964
MMAR444158
MMAR426368
MMAR402880
MMAR368407 MEMAR_2135
MMAR267377
MLEP272631 ML0925
MLAB410358
MKAN190192 MK0338
MJAN243232 MJ_1346
MHYO295358
MHYO262722
MHYO262719
MHUN323259 MHUN_0779
MGIL350054 MFLV_2928
MGEN243273
MFLO265311
MCAP340047
MBUR259564 MBUR_1975
MBOV410289 BCG_2237
MBOV233413 MB2244
MBAR269797 MBAR_A0666
MAVI243243 MAV_2267
MART243272
MAER449447 MAE_19270
MAEO419665
MACE188937 MA4216
MABS561007 MAB_1933C
LXYL281090 LXX10080
LWEL386043
LSPH444177 BSPH_1732
LSAK314315
LREU557436
LPNE400673 LPC_0780
LPNE297246 LPP1318
LPNE297245 LPL1315
LPNE272624 LPG1364
LPLA220668
LMON265669 LMOF2365_1317
LMON169963 LMO1299
LMES203120
LLAC272623
LLAC272622
LJOH257314
LINN272626
LHEL405566
LGAS324831
LDEL390333
LDEL321956
LCAS321967
LBRE387344 LVIS_0990
LBOR355277 LBJ_1043
LBOR355276 LBL_1991
LBIF456481 LEPBI_I1418
LBIF355278 LBF_1365
LACI272621
KRAD266940 KRAD_3291
IHOS453591 IGNI_1228
HWAL362976
HSP64091
HSOM228400 HSM_0743
HSOM205914 HS_0418
HSAL478009
HPYL85963 JHP0461
HPYL357544 HPAG1_0486
HPY HP0512
HMUK485914 HMUK_0709
HMAR272569
HINF71421 HI_0865
HINF374930
HINF281310 NTHI1036
HHEP235279 HH_0560
HDUC233412 HD_0750
HBUT415426 HBUT_1195
HACI382638 HAC_0878
GVIO251221 GLR1052
GOXY290633 GOX1101
GFOR411154
FTUL458234
FTUL418136
FTUL401614
FTUL393115
FTUL393011
FTUL351581
FSUC59374
FSP1855 FRANEAN1_1770
FSP106370 FRANCCI3_3142
FRANT
FPHI484022
FNUC190304
FNOD381764 FNOD_1449
FMAG334413
FJOH376686
FALN326424 FRAAL5161
ERUM302409 ERGA_CDS_00510
ERUM254945 ERWE_CDS_00520
EFAE226185 EF_2159
ECHA205920 ECH_0089
ECAN269484 ECAJ_0054
DSP255470 CBDBA1591
DSP216389
DRAD243230
DNOD246195 DNO_0435
DGEO319795 DGEO_1204
DETH243164 DET_0127
CVES412965 COSY_0458
CTRA471473
CTRA471472
CTET212717 CTC_02322
CTEP194439
CSUL444179
CRUT413404 RMAG_0498
CPNE182082 CPB0610
CPNE138677 CPJ0586
CPNE115713 CPN0586
CPNE115711 CP_0162
CPHY357809
CPER289380
CPER195103
CPER195102
CPEL335992 SAR11_0747
CNOV386415
CMUR243161
CMIC443906 CMM_1636
CMIC31964 CMS1619
CMET456442 MBOO_1947
CMAQ397948
CKOR374847
CKLU431943
CJEJ407148 C8J_0666
CJEJ360109 JJD26997_1307
CJEJ354242 CJJ81176_0722
CJEJ195099 CJE_0798
CJEJ192222 CJ0699C
CJEI306537 JK0702
CHUT269798
CHOM360107 CHAB381_1710
CGLU196627 CG2429
CFET360106 CFF8240_1054
CFEL264202 CF0852
CEFF196164 CE2116
CDIP257309 DIP1644
CDIF272563
CCUR360105 CCV52592_0276
CCON360104 CCC13826_1446
CCHL340177
CCAV227941
CBUR434922
CBUR360115
CBUR227377
CBOT536232
CBOT515621
CBOT508765
CBOT498213
CBOT441772
CBOT441771
CBOT441770
CBOT36826
CBLO291272 BPEN_643
CBLO203907 BFL618
CACE272562
CABO218497
BXEN266265
BWEI315730 BCERKBAB4_3469
BTUR314724 BT0763
BTRI382640 BT_1441
BTHE226186 BT_1529
BSP107806
BQUI283165 BQ07890
BLON206672 BL1076
BHEN283166 BH10160
BFRA295405 BF1592
BFRA272559
BCLA66692 ABC2179
BCIC186490
BCER226900 BC_1458
BBAC360095 BARBAKC583_0733
BAPH372461
BAPH198804
BANT592021 BAA_3856
BANT261594 GBAA3833
BANT260799 BAS3549
AYEL322098
AURANTIMONAS
ASP1667 ARTH_1600
APLE434271 APJL_1987
APLE416269 APL_1941
APHA212042 APH_1246
APER272557
ANAE240017 ANA_0904
AMAR329726 AM1_1497
AMAR234826 AM1206
ALAI441768
AFUL224325 AF_0949
ACEL351607 ACEL_0923
ABUT367737 ABU_1903
AAUR290340 AAUR_1744


Organism features enriched in list (features available for 341 out of the 363 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00002517192
Arrangment:Clusters 0.00009261717
Disease:Gastroenteritis 0.0081649313
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 0.00256091111
Disease:Wide_range_of_infections 0.00256091111
Endospores:No 4.662e-11160211
GC_Content_Range4:0-40 1.571e-36193213
GC_Content_Range4:40-60 2.280e-997224
GC_Content_Range4:60-100 1.081e-1150145
GC_Content_Range7:0-30 1.444e-64247
GC_Content_Range7:30-40 8.986e-27151166
GC_Content_Range7:50-60 2.792e-1329107
GC_Content_Range7:60-70 1.613e-1440134
Genome_Size_Range5:0-2 5.562e-33148155
Genome_Size_Range5:2-4 0.0000360137197
Genome_Size_Range5:4-6 4.253e-3441184
Genome_Size_Range5:6-10 0.00008381547
Genome_Size_Range9:0-1 0.00006772527
Genome_Size_Range9:1-2 2.719e-27123128
Genome_Size_Range9:2-3 3.380e-1099120
Genome_Size_Range9:4-5 4.981e-142396
Genome_Size_Range9:5-6 2.805e-151888
Genome_Size_Range9:6-8 5.919e-6938
Gram_Stain:Gram_Neg 7.894e-24137333
Gram_Stain:Gram_Pos 1.179e-17130150
Habitat:Host-associated 0.0000252143206
Habitat:Multiple 0.000576887178
Motility:No 4.346e-17130151
Motility:Yes 4.747e-21101267
Optimal_temp.:- 0.0036021136257
Optimal_temp.:25-30 0.0000142219
Optimal_temp.:30-37 0.00005301818
Optimal_temp.:37 0.000072779106
Oxygen_Req:Anaerobic 6.668e-781102
Oxygen_Req:Facultative 0.000184898201
Pathogenic_in:Human 0.0011274141213
Pathogenic_in:Plant 0.0094218415
Shape:Coccus 1.233e-117482
Shape:Irregular_coccus 0.00009261717
Shape:Rod 8.692e-18154347
Shape:Sphere 0.00288821719
Temp._range:Hyperthermophilic 0.00046172123



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951670.7291
GLYCOCAT-PWY (glycogen degradation I)2461830.6811
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)1491340.6562
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181640.6316
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3001960.6288
TYRFUMCAT-PWY (tyrosine degradation I)1841480.6283
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251660.6243
PWY-5918 (heme biosynthesis I)2721850.6241
PWY-5148 (acyl-CoA hydrolysis)2271630.5972
PWY-1269 (CMP-KDO biosynthesis I)3251990.5911
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2861850.5885
PWY-4041 (γ-glutamyl cycle)2791820.5857
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2911850.5761
AST-PWY (arginine degradation II (AST pathway))1201080.5724
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2961860.5708
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2901830.5651
NAGLIPASYN-PWY (lipid IVA biosynthesis)3482020.5613
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)1761340.5521
GDPRHAMSYN-PWY (GDP-D-rhamnose biosynthesis)1561240.5494
PWY-5028 (histidine degradation II)1301100.5436
GLUTATHIONESYN-PWY (glutathione biosynthesis)3391950.5331
ECASYN-PWY (enterobacterial common antigen biosynthesis)1911380.5307
PWY0-541 (cyclopropane fatty acid (CFA) biosynthesis)3001810.5273
P344-PWY (acrylonitrile degradation)2101450.5210
REDCITCYC (TCA cycle variation II)1741280.5141
PWY-5857 (ubiquinone-10 biosynthesis (prokaryotic))1831320.5131
PWY-5913 (TCA cycle variation IV)3011790.5114
PWY-5856 (ubiquinone-9 biosynthesis (prokaryotic))2551600.4977
PWY-5340 (sulfate activation for sulfonation)3852030.4922
SULFATE-CYS-PWY (superpathway of sulfate assimilation and cysteine biosynthesis)3651970.4915
UBISYN-PWY (ubiquinol-8 biosynthesis (prokaryotic))3982060.4876
PWY-5855 (ubiquinone-7 biosynthesis (prokaryotic))1911320.4867
PWY-6087 (4-chlorocatechol degradation)2231450.4823
GLYOXYLATE-BYPASS (glyoxylate cycle)1691210.4786
PWY0-845 (superpathway of pyridoxal 5'-phosphate biosynthesis and salvage)3291830.4739
PWY-561 (superpathway of glyoxylate cycle)1621170.4728
PWY0-1329 (succinate to cytochrome bo oxidase electron transfer)96830.4683
PWY-5669 (phosphatidylethanolamine biosynthesis I)4162080.4672
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491530.4656
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491530.4656
CHOLINE-BETAINE-ANA-PWY (choline degradation I)1351030.4646
PWY-6193 (3-chlorocatechol degradation II (ortho))1941300.4625
BETSYN-PWY (glycine betaine biosynthesis I (Gram-negative bacteria))1381040.4607
SO4ASSIM-PWY (sulfate reduction I (assimilatory))3111740.4541
PWY-6268 (adenosylcobalamin salvage from cobalamin)3171760.4538
PWY-46 (putrescine biosynthesis III)1381030.4525
GLUCONSUPER-PWY (D-gluconate degradation)2291420.4440
PYRIDOXSYN-PWY (pyridoxal 5'-phosphate biosynthesis I)4222060.4414
GALACTITOLCAT-PWY (galactitol degradation)73670.4406
PWY0-1335 (NADH to cytochrome bo oxidase electron transfer)112880.4360
PWY-5386 (methylglyoxal degradation I)3051690.4343
PHENYLALANINE-DEG1-PWY (phenylalanine degradation I (aerobic))2891630.4319
PWY0-862 (cis-dodecenoyl biosynthesis)3431810.4293
4AMINOBUTMETAB-PWY (superpathway of 4-aminobutyrate degradation)2121330.4293
GALACTCAT-PWY (D-galactonate degradation)104830.4285
PWY-2361 (3-oxoadipate degradation)82710.4282
PWY0-981 (taurine degradation IV)106840.4281
GLYSYN-THR-PWY (glycine biosynthesis IV)2151340.4277
GALACTARDEG-PWY (D-galactarate degradation I)1511060.4270
P601-PWY (D-camphor degradation)95780.4266
GLUCARDEG-PWY (D-glucarate degradation I)1521060.4233
VALDEG-PWY (valine degradation I)2901620.4227
PWY-3162 (tryptophan degradation V (side chain pathway))94770.4222
PWY0-1353 (succinate to cytochrome bd oxidase electron transfer)1781170.4179
LIPASYN-PWY (phospholipases)2121310.4150
PWY-5755 (4-hydroxybenzoate biosynthesis II (bacteria and fungi))81690.4138
ARGSYNBSUB-PWY (arginine biosynthesis II (acetyl cycle))3831910.4128
P184-PWY (protocatechuate degradation I (meta-cleavage pathway))94760.4128
PWY-5964 (molybdopterin guanine dinucleotide biosynthesis)2901600.4092
PWY0-1313 (acetate conversion to acetyl-CoA)3851910.4087
PWY0-901 (selenocysteine biosynthesis I (bacteria))2301370.4062
P381-PWY (adenosylcobalamin biosynthesis II (late cobalt incorporation))3711860.4033
PWY-5188 (tetrapyrrole biosynthesis I)4392050.4016
PWY-6089 (3-chlorocatechol degradation I (ortho))102790.4016
PWY-5507 (adenosylcobalamin biosynthesis I (early cobalt insertion))2991620.4012
PWY-6134 (tyrosine biosynthesis IV)89720.4002



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG10387   EG10385   EG10383   
EG116680.9996140.9997140.999359
EG103870.9999270.999721
EG103850.999678
EG10383



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PAIRWISE BLAST SCORES:

  EG11668   EG10387   EG10385   EG10383   
EG116680.0f0-3.7e-89-
EG10387-0.0f0--
EG103851.2e-90-0.0f0-
EG10383---0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10383 EG10385 EG10387 (centered at EG10387)
EG11668 (centered at EG11668)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  EG11668   EG10387   EG10385   EG10383   
185/623251/623223/623410/623
AAEO224324:0:Tyes703-7030
AAUR290340:2:Tyes---0
AAVE397945:0:Tyes3230
ABAC204669:0:Tyes10987-
ABAU360910:0:Tyes0102
ABOR393595:0:Tyes0103
ABUT367737:0:Tyes---0
ACAU438753:0:Tyes55150315020
ACEL351607:0:Tyes---0
ACRY349163:8:Tyes-011030
ADEH290397:0:Tyes63899803363
AEHR187272:0:Tyes3230
AFER243159:0:Tyes2749012326
AFUL224325:0:Tyes---0
AHYD196024:0:Tyes0103
AMAR234826:0:Tyes---0
AMAR329726:9:Tyes---0
AMET293826:0:Tyes010-
ANAE240017:0:Tyes---0
AORE350688:0:Tyes101-
APHA212042:0:Tyes---0
APLE416269:0:Tyes---0
APLE434271:0:Tno---0
ASAL382245:5:Tyes3230
ASP1667:3:Tyes---0
ASP232721:2:Tyes3230
ASP62928:0:Tyes0103
ASP62977:0:Tyes0101005
ASP76114:2:Tyes0103
AVAR240292:3:Tyes-1204-0
BABO262698:1:Tno-1081070
BAFZ390236:2:Fyes0-0-
BAMB339670:3:Tno0102
BAMB398577:3:Tno0102
BAMY326423:0:Tyes-0-395
BANT260799:0:Tno---0
BANT261594:2:Tno---0
BANT568206:2:Tyes-2299-0
BANT592021:2:Tno---0
BBAC264462:0:Tyes1139256829280
BBAC360095:0:Tyes---0
BBRO257310:0:Tyes0102
BBUR224326:21:Fno0-0-
BCAN483179:1:Tno-1161150
BCEN331271:0:Tno2120
BCEN331272:3:Tyes0102
BCER226900:1:Tyes-0--
BCER288681:0:Tno-0-2107
BCER315749:1:Tyes-0-66
BCER405917:1:Tyes-0-2019
BCER572264:1:Tno-0-2258
BCLA66692:0:Tyes---0
BFRA295405:0:Tno-0--
BGAR290434:2:Fyes0-0-
BHAL272558:0:Tyes11580-558
BHEN283166:0:Tyes---0
BHER314723:0:Fyes0-0-
BJAP224911:0:Fyes-01467
BLIC279010:0:Tyes-0-469
BLON206672:0:Tyes---0
BMAL243160:1:Tno0103
BMAL320388:1:Tno0103
BMAL320389:1:Tyes0102
BMEL224914:1:Tno-01117
BMEL359391:1:Tno-1041030
BOVI236:1:Tyes-98970
BPAR257311:0:Tno0102
BPER257313:0:Tyes2120
BPET94624:0:Tyes2120
BPSE272560:1:Tyes0102
BPSE320372:1:Tno0102
BPSE320373:1:Tno0102
BPUM315750:0:Tyes-0-346
BQUI283165:0:Tyes---0
BSP36773:2:Tyes0102
BSP376:0:Tyes0589588921
BSUB:0:Tyes-0-412
BSUI204722:1:Tyes-1121110
BSUI470137:1:Tno--1160
BTHA271848:1:Tno2120
BTHE226186:0:Tyes0---
BTHU281309:1:Tno-0-2096
BTHU412694:1:Tno-0-1913
BTRI382640:1:Tyes---0
BTUR314724:0:Fyes0---
BVIE269482:7:Tyes0102
BWEI315730:4:Tyes---0
CAULO:0:Tyes159801598233
CBEI290402:0:Tyes01-383
CBLO203907:0:Tyes---0
CBLO291272:0:Tno---0
CCON360104:2:Tyes---0
CCUR360105:0:Tyes---0
CDES477974:0:Tyes-0-1340
CDIP257309:0:Tyes---0
CEFF196164:0:Fyes---0
CFEL264202:1:Tyes0---
CFET360106:0:Tyes---0
CGLU196627:0:Tyes---0
CHOM360107:1:Tyes---0
CHYD246194:0:Tyes1119128511190
CJAP155077:0:Tyes3230
CJEI306537:0:Tyes---0
CJEJ192222:0:Tyes---0
CJEJ195099:0:Tno---0
CJEJ354242:2:Tyes---0
CJEJ360109:0:Tyes---0
CJEJ407148:0:Tno---0
CMET456442:0:Tyes---0
CMIC31964:2:Tyes---0
CMIC443906:2:Tyes---0
CPEL335992:0:Tyes---0
CPNE115711:1:Tyes0---
CPNE115713:0:Tno0---
CPNE138677:0:Tno0---
CPNE182082:0:Tno0---
CPRO264201:0:Fyes010-
CPSY167879:0:Tyes-103
CRUT413404:0:Tyes---0
CSAL290398:0:Tyes-230
CSP501479:8:Fyes-0-518
CSP78:2:Tyes0173401988
CTET212717:0:Tyes0---
CVES412965:0:Tyes---0
CVIO243365:0:Tyes3230
DARO159087:0:Tyes0842841846
DDES207559:0:Tyes354603546-
DETH243164:0:Tyes-0--
DGEO319795:1:Tyes---0
DHAF138119:0:Tyes042040-
DNOD246195:0:Tyes0---
DOLE96561:0:Tyes241301-
DPSY177439:2:Tyes025860-
DRED349161:0:Tyes06766771497
DSHI398580:5:Tyes-0-273
DSP255470:0:Tno-0--
DVUL882:1:Tyes01610-
ECAN269484:0:Tyes---0
ECAR218491:0:Tyes0102
ECHA205920:0:Tyes---0
ECOL199310:0:Tno0202420232025
ECOL316407:0:Tno0116711681166
ECOL331111:6:Tno149102
ECOL362663:0:Tno0181318121814
ECOL364106:1:Tno0194019391941
ECOL405955:2:Tyes0176117601762
ECOL409438:6:Tyes151102
ECOL413997:0:Tno0163616351637
ECOL439855:4:Tno0180618051807
ECOL469008:0:Tno0269927002698
ECOL481805:0:Tno0271927202718
ECOL585034:0:Tno144102
ECOL585035:0:Tno0189018891891
ECOL585055:0:Tno143102
ECOL585056:2:Tno0182618251827
ECOL585057:0:Tno0787788786
ECOL585397:0:Tno0185418531855
ECOL83334:0:Tno145102
ECOLI:0:Tno0167316721674
ECOO157:0:Tno152102
EFAE226185:3:Tyes---0
EFER585054:1:Tyes0140141139
ELIT314225:0:Tyes-9439420
ERUM254945:0:Tyes---0
ERUM302409:0:Tno---0
ESP42895:1:Tyes2120
FALN326424:0:Tyes---0
FNOD381764:0:Tyes---0
FSP106370:0:Tyes---0
FSP1855:0:Tyes---0
GBET391165:0:Tyes-2702690
GKAU235909:1:Tyes-0-383
GMET269799:1:Tyes47121712180
GOXY290633:5:Tyes---0
GSUL243231:0:Tyes103210827
GTHE420246:1:Tyes-0-344
GURA351605:0:Tyes1761011310
GVIO251221:0:Tyes---0
HACI382638:1:Tyes---0
HARS204773:0:Tyes3230
HAUR316274:2:Tyes034430-
HBUT415426:0:Tyes---0
HCHE349521:0:Tyes4716103
HDUC233412:0:Tyes---0
HHAL349124:0:Tyes010359
HHEP235279:0:Tyes---0
HINF281310:0:Tyes---0
HINF71421:0:Tno---0
HMOD498761:0:Tyes-0-1660
HMUK485914:1:Tyes---0
HNEP81032:0:Tyes10070-70
HPY:0:Tno---0
HPYL357544:1:Tyes---0
HPYL85963:0:Tno---0
HSOM205914:1:Tyes---0
HSOM228400:0:Tno---0
IHOS453591:0:Tyes---0
ILOI283942:0:Tyes-102
JSP290400:1:Tyes-729-0
JSP375286:0:Tyes3230
KPNE272620:2:Tyes201102
KRAD266940:2:Fyes---0
LBIF355278:2:Tyes---0
LBIF456481:2:Tno---0
LBOR355276:1:Tyes---0
LBOR355277:1:Tno---0
LBRE387344:2:Tyes---0
LCHO395495:0:Tyes541230
LINT189518:1:Tyes-2604-0
LINT267671:1:Tno-691-0
LINT363253:3:Tyes02010-
LMON169963:0:Tno---0
LMON265669:0:Tyes---0
LPNE272624:0:Tno---0
LPNE297245:1:Fno---0
LPNE297246:1:Fyes---0
LPNE400673:0:Tno---0
LSPH444177:1:Tyes---0
LXYL281090:0:Tyes---0
MABS561007:1:Tyes---0
MACE188937:0:Tyes---0
MAER449447:0:Tyes---0
MAQU351348:2:Tyes0103
MAVI243243:0:Tyes---0
MBAR269797:1:Tyes---0
MBOV233413:0:Tno---0
MBOV410289:0:Tno---0
MBUR259564:0:Tyes---0
MCAP243233:0:Tyes8328338320
MEXT419610:0:Tyes3774444450
MFLA265072:0:Tyes3230
MGIL350054:3:Tyes---0
MHUN323259:0:Tyes---0
MJAN243232:2:Tyes---0
MKAN190192:0:Tyes---0
MLEP272631:0:Tyes---0
MLOT266835:2:Tyes206342430
MMAG342108:0:Tyes-167016710
MMAR368407:0:Tyes---0
MMAR394221:0:Tyes120311112030
MMAZ192952:0:Tyes---0
MPET420662:1:Tyes0103
MSED399549:0:Tyes---0
MSME246196:0:Tyes---0
MSP164756:1:Tno---0
MSP164757:0:Tno---0
MSP189918:2:Tyes---0
MSP266779:3:Tyes118776750
MSP400668:0:Tyes0102
MSP409:2:Tyes-01646
MSTA339860:0:Tyes---0
MSUC221988:0:Tyes---0
MTBCDC:0:Tno---0
MTBRV:0:Tno---0
MTHE187420:0:Tyes---0
MTHE264732:0:Tyes-0-1134
MTUB336982:0:Tno---0
MTUB419947:0:Tyes---0
MVAN350058:0:Tyes---0
MXAN246197:0:Tyes448921320-
NARO279238:0:Tyes9568308310
NEUR228410:0:Tyes---0
NEUT335283:2:Tyes0--1081
NFAR247156:2:Tyes---0
NGON242231:0:Tyes---0
NHAM323097:2:Tyes-01386
NMEN122586:0:Tno---0
NMEN122587:0:Tyes---0
NMEN272831:0:Tno---0
NMEN374833:0:Tno---0
NMUL323848:3:Tyes---0
NOCE323261:1:Tyes0--1842
NSEN222891:0:Tyes---0
NSP103690:6:Tyes---0
NSP35761:1:Tyes---0
NSP387092:0:Tyes---0
NWIN323098:0:Tyes0455456927
OANT439375:5:Tyes-0117
OCAR504832:0:Tyes-1931940
OIHE221109:0:Tyes-0--
PABY272844:0:Tyes---0
PACN267747:0:Tyes---0
PAER208963:0:Tyes6560
PAER208964:0:Tno6560
PARC259536:0:Tyes--5650
PATL342610:0:Tyes3230
PCAR338963:0:Tyes8504984990
PCRY335284:1:Tyes-2742750
PDIS435591:0:Tyes--0-
PENT384676:0:Tyes0103
PFLU205922:0:Tyes0105
PFLU216595:1:Tyes768105
PFLU220664:0:Tyes4442109
PFUR186497:0:Tyes---0
PHAL326442:1:Tyes0103
PHOR70601:0:Tyes---0
PING357804:0:Tyes-340
PLUM243265:0:Fyes0102
PLUT319225:0:Tyes0-0-
PMAR146891:0:Tyes---0
PMAR167539:0:Tyes---0
PMAR167540:0:Tyes---0
PMAR167542:0:Tyes---0
PMAR167546:0:Tyes---0
PMAR167555:0:Tyes---0
PMAR59920:0:Tno---0
PMAR74546:0:Tyes---0
PMAR74547:0:Tyes---0
PMAR93060:0:Tyes---0
PMEN399739:0:Tyes0322432253221
PMOB403833:0:Tyes---0
PMUL272843:1:Tyes---0
PNAP365044:8:Tyes0103
PPRO298386:2:Tyes3230
PPUT160488:0:Tno2120
PPUT351746:0:Tyes3230
PPUT76869:0:Tno3230
PSP117:0:Tyes0-761-
PSP296591:2:Tyes3230
PSP312153:0:Tyes-102
PSP56811:2:Tyes1621611620
PSTU379731:0:Tyes3280104
PSYR205918:0:Tyes-450
PSYR223283:2:Tyes1595107
PTHE370438:0:Tyes137252913720
RCAS383372:0:Tyes-244-0
RDEN375451:4:Tyes-173-0
RETL347834:5:Tyes-01154
REUT264198:3:Tyes0103
REUT381666:2:Tyes0103
RFER338969:1:Tyes0240241238
RLEG216596:6:Tyes-01133
RMET266264:2:Tyes0103
RPAL258594:0:Tyes-01379
RPAL316055:0:Tyes-2512520
RPAL316056:0:Tyes0174717481552
RPAL316057:0:Tyes-01316
RPAL316058:0:Tyes-3293280
RPOM246200:1:Tyes-0-201
RRUB269796:1:Tyes0291292700
RSAL288705:0:Tyes---0
RSOL267608:0:Tyes---0
RSOL267608:1:Tyes101-
RSP101510:3:Fyes---0
RSP357808:0:Tyes-43-0
RSPH272943:4:Tyes-0-357
RSPH349101:2:Tno-0-329
RSPH349102:5:Tyes-138-0
SACI330779:0:Tyes---0
SACI56780:0:Tyes011090-
SALA317655:1:Tyes-112811270
SARE391037:0:Tyes---0
SAVE227882:1:Fyes---0
SBAL399599:3:Tyes-1044
SBAL402882:1:Tno-1048
SBOY300268:1:Tyes0102
SCO:2:Fyes---0
SDEG203122:0:Tyes0103
SDEN318161:0:Tyes-340
SDYS300267:1:Tyes0141142140
SELO269084:0:Tyes---0
SENT209261:0:Tno2120
SENT220341:0:Tno2120
SENT295319:0:Tno0102
SENT321314:2:Tno0102
SENT454169:2:Tno0102
SERY405948:0:Tyes---0
SFLE198214:0:Tyes140102
SFLE373384:0:Tno422120
SFUM335543:0:Tyes27527613440
SGLO343509:3:Tyes2120
SHAL458817:0:Tyes-1012
SHIGELLA:0:Tno0137138136
SLAC55218:1:Fyes-210-0
SLOI323850:0:Tyes-670
SMED366394:3:Tyes157301295
SMEL266834:2:Tyes136001188
SONE211586:1:Tyes-60610
SPEA398579:0:Tno-13140
SPRO399741:1:Tyes2120
SRUB309807:1:Tyes0---
SSED425104:0:Tyes-1010
SSOL273057:0:Tyes---0
SSON300269:1:Tyes0167116701672
SSP1131:0:Tyes---0
SSP1148:0:Tyes---0
SSP292414:2:Tyes-346-0
SSP321327:0:Tyes---0
SSP321332:0:Tyes---0
SSP387093:0:Tyes---0
SSP644076:5:Fyes---0
SSP644076:7:Fyes-0--
SSP64471:0:Tyes---0
SSP84588:0:Tyes---0
SSP94122:1:Tyes-1042
STHE292459:0:Tyes1960-19600
STOK273063:0:Tyes---0
STRO369723:0:Tyes---0
STYP99287:1:Tyes0102
SWOL335541:0:Tyes---0
TCRU317025:0:Tyes-3803810
TDEN243275:0:Tyes0-0-
TDEN292415:0:Tyes0103
TDEN326298:0:Tyes---0
TELO197221:0:Tyes---0
TERY203124:0:Tyes---0
TFUS269800:0:Tyes---0
TLET416591:0:Tyes---0
TMAR243274:0:Tyes---0
TPAL243276:0:Tyes0-0-
TPET390874:0:Tno---0
TPSE340099:0:Tyes---0
TROS309801:1:Tyes-41-0
TSP1755:0:Tyes---0
TSP28240:0:Tyes---0
TTUR377629:0:Tyes3230
TWHI203267:0:Tyes---0
TWHI218496:0:Tno---0
UMET351160:0:Tyes---0
VCHO:0:Tyes3230
VCHO345073:1:Tno3230
VEIS391735:1:Tyes0103
VFIS312309:2:Tyes-103
VPAR223926:1:Tyes-103
VVUL196600:2:Tyes-103
VVUL216895:1:Tno-230
WSUC273121:0:Tyes---0
XAUT78245:1:Tyes0338533842560
XAXO190486:0:Tyes22340
XCAM190485:0:Tyes-340
XCAM314565:0:Tno-340
XCAM316273:0:Tno-104
XCAM487884:0:Tno-340
XFAS160492:2:Tno-760
XFAS183190:1:Tyes-015
XFAS405440:0:Tno-015
XORY291331:0:Tno0282281286
XORY342109:0:Tyes0254253257
XORY360094:0:Tno597790
YENT393305:1:Tyes0102
YPES187410:5:Tno2120
YPES214092:3:Tno0102
YPES349746:2:Tno0103
YPES360102:3:Tyes0246424652462
YPES377628:2:Tno2614102
YPES386656:2:Tno2120
YPSE273123:2:Tno1230102
YPSE349747:2:Tno2761102
ZMOB264203:0:Tyes---0



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