CANDIDATE ID: 1020

CANDIDATE ID: 1020

NUMBER OF GENES: 4
AVERAGE SCORE:    9.9938333e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G6647 (ycjM) (b1309)
   Products of gene:
     - G6647-MONOMER (predicted glucosyltransferase)

- EG10561 (malQ) (b3416)
   Products of gene:
     - AMYLOMALT-MONOMER (amylomaltase)
       Reactions:
        maltodextrin(n+m-1) + maltodextrin(n+m-1)  =  maltodextrin(n-1) + beta-D-glucose

- EG10381 (glgX) (b3431)
   Products of gene:
     - EG10381-MONOMER (glycogen phosphorylase-limit dextrin α-1,6-glucohydrolase)
       Reactions:
        a limit dextrin + H2O  ->  a debranched limit dextrin + maltotetraose
         In pathways
         GLYCOCAT-PWY (glycogen degradation I)

- EG10378 (glgB) (b3432)
   Products of gene:
     - GLYCOGEN-BRANCH-MONOMER (1,4-α-glucan branching enzyme)
       Reactions:
        a 1,4-alpha-D-glucan  =  glycogen
         In pathways
         GLYCOGENSYNTH-PWY (glycogen biosynthesis I (from ADP-D-Glucose))



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ORGANISMS CONTAINING AT LEAST 3 GENES FROM THE GROUP:

Total number of orgs: 276
Effective number of orgs (counting one per cluster within 468 clusters): 196

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317583
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329533
YPES386656 ncbi Yersinia pestis Pestoides F3
YPES377628 ncbi Yersinia pestis Nepal5163
YPES360102 ncbi Yersinia pestis Antiqua3
YPES349746 ncbi Yersinia pestis Angola3
YPES214092 ncbi Yersinia pestis CO923
YPES187410 ncbi Yersinia pestis KIM 103
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80813
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A4
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110184
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103314
XCAM487884 Xanthomonas campestris pv. paulliniae4
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-104
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80044
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339134
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3064
VVUL216895 ncbi Vibrio vulnificus CMCP64
VVUL196600 ncbi Vibrio vulnificus YJ0164
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106333
VFIS312309 ncbi Vibrio fischeri ES1144
VCHO345073 ncbi Vibrio cholerae O3953
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169613
TTUR377629 ncbi Teredinibacter turnerae T79014
TROS309801 ncbi Thermomicrobium roseum DSM 51593
TFUS269800 ncbi Thermobifida fusca YX4
TERY203124 ncbi Trichodesmium erythraeum IMS1013
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252593
TCRU317025 ncbi Thiomicrospira crunogena XCL-23
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT23
SSUI391296 ncbi Streptococcus suis 98HAH334
SSUI391295 ncbi Streptococcus suis 05ZYH334
SSP94122 ncbi Shewanella sp. ANA-34
SSP84588 ncbi Synechococcus sp. WH 81024
SSP64471 ncbi Synechococcus sp. CC93113
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)3
SSP321327 ncbi Synechococcus sp. JA-3-3Ab3
SSP1148 ncbi Synechocystis sp. PCC 68033
SSP1131 Synechococcus sp. CC96054
SSON300269 ncbi Shigella sonnei Ss0463
SRUB309807 ncbi Salinibacter ruber DSM 138554
SPRO399741 ncbi Serratia proteamaculans 5684
SPNE488221 ncbi Streptococcus pneumoniae 705854
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-64
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-144
SPNE171101 ncbi Streptococcus pneumoniae R64
SPNE170187 ncbi Streptococcus pneumoniae G544
SPNE1313 Streptococcus pneumoniae4
SONE211586 ncbi Shewanella oneidensis MR-14
SMEL266834 ncbi Sinorhizobium meliloti 10213
SMED366394 ncbi Sinorhizobium medicae WSM4193
SLOI323850 ncbi Shewanella loihica PV-44
SHIGELLA ncbi Shigella flexneri 2a str. 2457T3
SGOR29390 Streptococcus gordonii Challis3
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB3
SFLE373384 ncbi Shigella flexneri 5 str. 84013
SFLE198214 ncbi Shigella flexneri 2a str. 3013
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4763
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B673
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91503
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT183
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty23
SELO269084 ncbi Synechococcus elongatus PCC 63013
SDYS300267 ncbi Shigella dysenteriae Sd1973
SDEG203122 ncbi Saccharophagus degradans 2-404
SCO ncbi Streptomyces coelicolor A3(2)4
SBOY300268 ncbi Shigella boydii Sb2273
SBAL402882 ncbi Shewanella baltica OS1854
SBAL399599 ncbi Shewanella baltica OS1954
SAVE227882 ncbi Streptomyces avermitilis MA-46804
SAGA211110 ncbi Streptococcus agalactiae NEM3163
SAGA208435 ncbi Streptococcus agalactiae 2603V/R3
SAGA205921 ncbi Streptococcus agalactiae A9093
SACI56780 ncbi Syntrophus aciditrophicus SB3
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99414
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170254
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170294
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.14
RSP357808 ncbi Roseiflexus sp. RS-13
RSP101510 ncbi Rhodococcus jostii RHA14
RSOL267608 ncbi Ralstonia solanacearum GMI10004
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332093
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111704
RPAL316058 ncbi Rhodopseudomonas palustris HaA24
RPAL316057 ncbi Rhodopseudomonas palustris BisB54
RPAL316056 ncbi Rhodopseudomonas palustris BisB184
RPAL316055 ncbi Rhodopseudomonas palustris BisA534
RPAL258594 ncbi Rhodopseudomonas palustris CGA0094
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38414
RFER338969 ncbi Rhodoferax ferrireducens T1184
REUT381666 ncbi Ralstonia eutropha H164
REUT264198 ncbi Ralstonia eutropha JMP1344
RETL347834 ncbi Rhizobium etli CFN 424
RDEN375451 ncbi Roseobacter denitrificans OCh 1144
RCAS383372 ncbi Roseiflexus castenholzii DSM 139413
RALB246199 Ruminococcus albus 83
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30004
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a4
PSTU379731 ncbi Pseudomonas stutzeri A15014
PSP117 Pirellula sp.4
PRUM264731 ncbi Prevotella ruminicola 233
PPUT76869 ncbi Pseudomonas putida GB-14
PPUT351746 ncbi Pseudomonas putida F14
PPUT160488 ncbi Pseudomonas putida KT24404
PPRO298386 ncbi Photobacterium profundum SS94
PNAP365044 ncbi Polaromonas naphthalenivorans CJ23
PMUL272843 ncbi Pasteurella multocida multocida Pm703
PMOB403833 ncbi Petrotoga mobilis SJ953
PMEN399739 ncbi Pseudomonas mendocina ymp4
PMAR93060 ncbi Prochlorococcus marinus MIT 92154
PMAR74546 ncbi Prochlorococcus marinus MIT 93124
PMAR59920 ncbi Prochlorococcus marinus NATL2A4
PMAR167555 ncbi Prochlorococcus marinus NATL1A4
PMAR167546 ncbi Prochlorococcus marinus MIT 93014
PMAR167542 ncbi Prochlorococcus marinus MIT 95153
PMAR167540 Prochlorococcus marinus pastoris MED4ax4
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13754
PMAR146891 ncbi Prochlorococcus marinus AS96014
PINT246198 Prevotella intermedia 173
PING357804 ncbi Psychromonas ingrahamii 374
PFLU220664 ncbi Pseudomonas fluorescens Pf-54
PFLU216595 ncbi Pseudomonas fluorescens SBW254
PFLU205922 ncbi Pseudomonas fluorescens Pf0-14
PENT384676 ncbi Pseudomonas entomophila L484
PATL342610 ncbi Pseudoalteromonas atlantica T6c4
PAER208964 ncbi Pseudomonas aeruginosa PAO14
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA144
PACN267747 ncbi Propionibacterium acnes KPA1712024
OCAR504832 ncbi Oligotropha carboxidovorans OM53
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2554
NSP35761 Nocardioides sp.3
NOCE323261 ncbi Nitrosococcus oceani ATCC 197074
NMUL323848 ncbi Nitrosospira multiformis ATCC 251964
NHAM323097 ncbi Nitrobacter hamburgensis X144
MXAN246197 ncbi Myxococcus xanthus DK 16224
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-13
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra4
MTUB336982 ncbi Mycobacterium tuberculosis F114
MTBRV ncbi Mycobacterium tuberculosis H37Rv4
MTBCDC ncbi Mycobacterium tuberculosis CDC15514
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E3
MSP409 Methylobacterium sp.4
MSP400668 ncbi Marinomonas sp. MWYL13
MSP266779 ncbi Chelativorans sp. BNC14
MSP189918 ncbi Mycobacterium sp. KMS4
MSP164757 ncbi Mycobacterium sp. JLS4
MSP164756 ncbi Mycobacterium sp. MCS4
MSME246196 ncbi Mycobacterium smegmatis MC2 1554
MMAG342108 ncbi Magnetospirillum magneticum AMB-13
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK4
MFLA265072 ncbi Methylobacillus flagellatus KT3
MEXT419610 ncbi Methylobacterium extorquens PA14
MCAP243233 ncbi Methylococcus capsulatus Bath4
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P24
MBOV233413 ncbi Mycobacterium bovis AF2122/974
MAVI243243 ncbi Mycobacterium avium 1044
MAER449447 ncbi Microcystis aeruginosa NIES-8433
LXYL281090 ncbi Leifsonia xyli xyli CTCB073
LCHO395495 ncbi Leptothrix cholodnii SP-63
LACI272621 ncbi Lactobacillus acidophilus NCFM3
KRAD266940 ncbi Kineococcus radiotolerans SRS302164
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785784
HSOM228400 ncbi Haemophilus somnus 23363
HSOM205914 ncbi Haemophilus somnus 129PT3
HINF71421 ncbi Haemophilus influenzae Rd KW203
HINF281310 ncbi Haemophilus influenzae 86-028NP3
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237793
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-23
GBET391165 ncbi Granulibacter bethesdensis CGDNIH14
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-003
FTUL418136 ncbi Francisella tularensis tularensis WY96-34183
FTUL401614 ncbi Francisella novicida U1123
FTUL393115 ncbi Francisella tularensis tularensis FSC1983
FTUL393011 ncbi Francisella tularensis holarctica OSU183
FTUL351581 Francisella tularensis holarctica FSC2003
FSP1855 Frankia sp. EAN1pec4
FSP106370 ncbi Frankia sp. CcI34
FRANT ncbi Francisella tularensis tularensis SCHU S43
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250173
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255863
FMAG334413 ncbi Finegoldia magna ATCC 293283
FALN326424 ncbi Frankia alni ACN14a4
ESP42895 Enterobacter sp.4
EFER585054 ncbi Escherichia fergusonii ATCC 354693
ECOO157 ncbi Escherichia coli O157:H7 EDL9334
ECOL83334 Escherichia coli O157:H74
ECOL585397 ncbi Escherichia coli ED1a4
ECOL585057 ncbi Escherichia coli IAI394
ECOL585056 ncbi Escherichia coli UMN0264
ECOL585055 ncbi Escherichia coli 559894
ECOL585035 ncbi Escherichia coli S884
ECOL585034 ncbi Escherichia coli IAI14
ECOL481805 ncbi Escherichia coli ATCC 87394
ECOL469008 ncbi Escherichia coli BL21(DE3)4
ECOL439855 ncbi Escherichia coli SMS-3-54
ECOL413997 ncbi Escherichia coli B str. REL6064
ECOL409438 ncbi Escherichia coli SE114
ECOL405955 ncbi Escherichia coli APEC O14
ECOL364106 ncbi Escherichia coli UTI894
ECOL362663 ncbi Escherichia coli 5364
ECOL331111 ncbi Escherichia coli E24377A4
ECOL316407 ncbi Escherichia coli K-12 substr. W31104
ECOL199310 ncbi Escherichia coli CFT0734
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10433
DRAD243230 ncbi Deinococcus radiodurans R13
DGEO319795 ncbi Deinococcus geothermalis DSM 113003
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G203
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis3
CTRA471472 ncbi Chlamydia trachomatis 434/Bu3
CSP501479 Citreicella sp. SE454
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE253
CPNE182082 ncbi Chlamydophila pneumoniae TW-1833
CPNE138677 ncbi Chlamydophila pneumoniae J1383
CPNE115713 ncbi Chlamydophila pneumoniae CWL0293
CPNE115711 ncbi Chlamydophila pneumoniae AR393
CPER289380 ncbi Clostridium perfringens SM1013
CPER195103 ncbi Clostridium perfringens ATCC 131243
CPER195102 ncbi Clostridium perfringens 133
CMUR243161 ncbi Chlamydia muridarum Nigg3
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3823
CMIC31964 ncbi Clavibacter michiganensis sepedonicus3
CJEI306537 ncbi Corynebacterium jeikeium K4113
CJAP155077 Cellvibrio japonicus3
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130324
CFEL264202 ncbi Chlamydophila felis Fe/C-563
CEFF196164 ncbi Corynebacterium efficiens YS-3144
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131293
CCAV227941 ncbi Chlamydophila caviae GPIC3
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B4
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80524
CABO218497 ncbi Chlamydophila abortus S26/33
BXEN266265 ncbi Burkholderia xenovorans LB4004
BWEI315730 ncbi Bacillus weihenstephanensis KBAB43
BVIE269482 ncbi Burkholderia vietnamiensis G44
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54823
BTHA271848 ncbi Burkholderia thailandensis E2643
BSUB ncbi Bacillus subtilis subtilis 1683
BSP376 Bradyrhizobium sp.4
BSP36773 Burkholderia sp.4
BPSE320373 ncbi Burkholderia pseudomallei 6684
BPSE320372 ncbi Burkholderia pseudomallei 1710b4
BPSE272560 ncbi Burkholderia pseudomallei K962434
BPET94624 Bordetella petrii4
BPER257313 ncbi Bordetella pertussis Tohama I3
BPAR257311 ncbi Bordetella parapertussis 128223
BMAL320389 ncbi Burkholderia mallei NCTC 102473
BMAL320388 ncbi Burkholderia mallei SAVP13
BMAL243160 ncbi Burkholderia mallei ATCC 233443
BLON206672 ncbi Bifidobacterium longum NCC27054
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1104
BFRA295405 ncbi Bacteroides fragilis YCH463
BFRA272559 ncbi Bacteroides fragilis NCTC 93433
BCER405917 Bacillus cereus W3
BCER315749 ncbi Bacillus cytotoxicus NVH 391-983
BCER226900 ncbi Bacillus cereus ATCC 145793
BCEN331272 ncbi Burkholderia cenocepacia HI24244
BCEN331271 ncbi Burkholderia cenocepacia AU 10544
BBRO257310 ncbi Bordetella bronchiseptica RB504
BAMB398577 ncbi Burkholderia ambifaria MC40-64
BAMB339670 ncbi Burkholderia ambifaria AMMD4
ASP76114 ncbi Aromatoleum aromaticum EbN14
ASP62928 ncbi Azoarcus sp. BH724
ASP1667 Arthrobacter sp.4
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4493
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL033
APLE416269 ncbi Actinobacillus pleuropneumoniae L203
ANAE240017 Actinomyces oris MG14
ALAI441768 ncbi Acholeplasma laidlawii PG-8A3
AHYD196024 Aeromonas hydrophila dhakensis3
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C4
ACRY349163 ncbi Acidiphilium cryptum JF-54
ACEL351607 ncbi Acidothermus cellulolyticus 11B4
ACAU438753 ncbi Azorhizobium caulinodans ORS 5714
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3453
AAVE397945 ncbi Acidovorax citrulli AAC00-14
AAUR290340 ncbi Arthrobacter aurescens TC13


Names of the homologs of the genes in the group in each of these orgs
  G6647   EG10561   EG10381   EG10378   
YPSE349747 YPSIP31758_3992YPSIP31758_4005YPSIP31758_4006
YPSE273123 YPTB3774YPTB3786YPTB3787
YPES386656 YPDSF_0053YPDSF_3306YPDSF_3307
YPES377628 YPN_3939YPN_3589YPN_3590
YPES360102 YPA_3343YPA_3770YPA_3771
YPES349746 YPANGOLA_A3751YPANGOLA_A4119YPANGOLA_A4118
YPES214092 YPO0126YPO3941YPO3942
YPES187410 Y3902Y3887Y3886
YENT393305 YE3992YE4012YE4013
XORY360094 XOOORF_0193XOOORF_0116XOOORF_3704XOOORF_0192
XORY342109 XOO0174XOO0063XOO0060XOO0173
XORY291331 XOO0196XOO0115XOO0117XOO0194
XCAM487884 XCC-B100_0838XCC-B100_0443XCC-B100_1078XCC-B100_0441
XCAM316273 XCAORF_3697XCAORF_4101XCAORF_4098XCAORF_4404
XCAM314565 XC_0805XC_0424XC_1047XC_0422
XCAM190485 XCC3359XCC0411XCC3109XCC0409
XAXO190486 XAC3490XAC0428XAC0431XAC0426
VVUL216895 VV2_0256VV2_1251VV2_1226VV2_1252
VVUL196600 VVA1393VVA0078VVA0052VVA0079
VPAR223926 VPA1619VPA1645VPA1618
VFIS312309 VFA0731VFA0809VFA0801VFA0808
VCHO345073 VC0395_0118VC0395_0212VC0395_0117
VCHO VCA0014VCA1029VCA0016
TTUR377629 TERTU_3167TERTU_0935TERTU_0937TERTU_0936
TROS309801 TRD_1931TRD_1932TRD_1933
TFUS269800 TFU_0584TFU_2205TFU_1891TFU_0582
TERY203124 TERY_1296TERY_3430TERY_1837
TDEN292415 TBD_1172TBD_1174TBD_2058
TCRU317025 TCR_0774TCR_0510TCR_0511
STYP99287 STM3513STM1558STM3538
SSUI391296 SSU98_1563SSU98_2134SSU98_2067SSU98_1029
SSUI391295 SSU05_1555SSU05_2131SSU05_2064SSU05_1016
SSP94122 SHEWANA3_0066SHEWANA3_2935SHEWANA3_2933SHEWANA3_2934
SSP84588 SYNW2435OR2469SYNW0962OR3569SYNW0585OR2037SYNW1494OR0430
SSP64471 GSYN0383GSYN2330GSYN2011
SSP321332 CYB_0677CYB_1490CYB_1978
SSP321327 CYA_1097CYA_2436CYA_2062
SSP1148 SLL1676SLR0237SLL0158
SSP1131 SYNCC9605_2606SYNCC9605_1614SYNCC9605_0815SYNCC9605_1018
SSON300269 SSO_3548SSO_3671SSO_3672
SRUB309807 SRU_0847SRU_0660SRU_0849SRU_0846
SPRO399741 SPRO_2521SPRO_4635SPRO_4646SPRO_4647
SPNE488221 SP70585_1951SP70585_2212SP70585_0328SP70585_1191
SPNE487214 SPH_2011SPH_2296SPH_0386SPH_1214
SPNE487213 SPT_1815SPT_2115SPT_0315SPT_1166
SPNE171101 SPR1709SPR1917SPR0247SPR1029
SPNE170187 SPN21002SPN09149SPN08148SPN03164
SPNE1313 SPJ_1802SPJ_2128SPJ_0278SPJ_1058
SONE211586 SO_2213SO_1493SO_1495SO_1494
SMEL266834 SMB20099SMB21446SMC03922
SMED366394 SMED_4038SMED_4409SMED_2740
SLOI323850 SHEW_1889SHEW_1167SHEW_1169SHEW_1168
SHIGELLA MALQGLGXGLGB
SGOR29390 SGO_1652SGO_0105SGO_1554
SFUM335543 SFUM_3452SFUM_2956SFUM_3451
SFLE373384 SFV_3424SFV_3440SFV_3441
SFLE198214 AAN44900.1AAN44914.1AAN44915.1
SENT454169 SEHA_C3821SEHA_C3846SEHA_C3847
SENT321314 SCH_3445SCH_3467SCH_3468
SENT295319 SPA3378SPA3388SPA3389
SENT220341 STY4283STY1505STY4272
SENT209261 T3993T1471T3982
SELO269084 SYC0527_CSYC1418_DSYC0464_C
SDYS300267 SDY_3660SDY_3577SDY_3578
SDEG203122 SDE_3210SDE_0986SDE_0988SDE_0987
SCO SCO5442SCO2649SCO7338SCO7332
SBOY300268 SBO_3405SBO_3429SBO_3430
SBAL402882 SHEW185_0061SHEW185_1320SHEW185_1322SHEW185_1321
SBAL399599 SBAL195_0066SBAL195_1356SBAL195_1358SBAL195_1357
SAVE227882 SAV2803SAV5391SAV2789SAV2805
SAGA211110 GBS0190GBS1508GBS0871
SAGA208435 SAG_1924SAG_1439SAG_0853
SAGA205921 SAK_0258SAK_1473SAK_0976
SACI56780 SYN_02630SYN_01069SYN_02257
RXYL266117 RXYL_0315RXYL_0251RXYL_0317RXYL_0316
RSPH349102 RSPH17025_1784RSPH17025_1780RSPH17025_2267RSPH17025_1783
RSPH349101 RSPH17029_1110RSPH17029_1114RSPH17029_1530RSPH17029_1111
RSPH272943 RSP_2446RSP_2451RSP_2884RSP_2448
RSP357808 ROSERS_3310ROSERS_1575ROSERS_0827
RSP101510 RHA1_RO06041RHA1_RO04830RHA1_RO06450RHA1_RO01449
RSOL267608 RSP0240RSP0236RSP0238RSP0239
RSAL288705 RSAL33209_0426RSAL33209_1717RSAL33209_0428
RRUB269796 RRU_A1605RRU_A1607RRU_A0505RRU_A2576
RPAL316058 RPB_1883RPB_1885RPB_2254RPB_1882
RPAL316057 RPD_3483RPD_3481RPD_3485RPD_3484
RPAL316056 RPC_3679RPC_3677RPC_3681RPC_3680
RPAL316055 RPE_3717RPE_3644RPE_3719RPE_3718
RPAL258594 RPA3643RPA3641RPA3645RPA3644
RLEG216596 PRL120709PRL120723PRL110304RL4115
RFER338969 RFER_2160RFER_2156RFER_2158RFER_2162
REUT381666 H16_B1558H16_B1561H16_B1560H16_B1559
REUT264198 REUT_B4228REUT_B4231REUT_B4230REUT_B4229
RETL347834 RHE_PF00276RHE_PF00262RHE_PE00208RHE_PF00275
RDEN375451 RD1_3715RD1_2871RD1_2872RD1_2875
RCAS383372 RCAS_4167RCAS_2645RCAS_1247
RALB246199 GRAORF_0376GRAORF_0033GRAORF_2260
PSYR223283 PSPTO_2761PSPTO_3127PSPTO_3130PSPTO_2762
PSYR205918 PSYR_2490PSYR_2994PSYR_2997PSYR_2491
PSTU379731 PST_2153PST_2139PST_2142PST_2152
PSP117 RB12343RB4161RB9292RB2638
PRUM264731 GFRORF2751GFRORF2749GFRORF1305
PPUT76869 PPUTGB1_3658PPUTGB1_3651PPUTGB1_3654PPUTGB1_3657
PPUT351746 PPUT_1784PPUT_1791PPUT_1788PPUT_1785
PPUT160488 PP_4059PP_4052PP_4055PP_4058
PPRO298386 PBPRA1225PBPRB1329PBPRB0412PBPRB1328
PNAP365044 PNAP_0232PNAP_1103PNAP_1104
PMUL272843 PM0540PM0542PM0541
PMOB403833 PMOB_1799PMOB_1750PMOB_1316
PMEN399739 PMEN_2294PMEN_2279PMEN_2282PMEN_2293
PMAR93060 P9215_09271P9215_12171P9215_15511P9215_06661
PMAR74546 PMT9312_0838PMT9312_1092PMT9312_1420PMT9312_0584
PMAR59920 PMN2A_0246PMN2A_0669PMN2A_0893PMN2A_0020
PMAR167555 NATL1_09141NATL1_15011NATL1_17491NATL1_06401
PMAR167546 P9301ORF_0911P9301ORF_1209P9301ORF_1537P9301ORF_0625
PMAR167542 P9515ORF_1092P9515ORF_1551P9515ORF_0685
PMAR167540 PMM0961PMM1081PMM1322PMM0584
PMAR167539 PRO_0728PRO_1116PRO_1403PRO_1078
PMAR146891 A9601_08971A9601_11871A9601_15221A9601_06401
PINT246198 PIN_A0155PIN_A0157PIN_A1721
PING357804 PING_2600PING_2365PING_2363PING_2364
PFLU220664 PFL_2873PFL_2885PFL_2882PFL_2874
PFLU216595 PFLU2762PFLU3366PFLU3369PFLU2763
PFLU205922 PFL_2535PFL_2547PFL_2544PFL_2536
PENT384676 PSEEN2045PSEEN2052PSEEN2049PSEEN2046
PATL342610 PATL_2164PATL_1635PATL_1637PATL_1636
PAER208964 PA2152PA2163PA2160PA2153
PAER208963 PA14_36730PA14_36590PA14_36630PA14_36710
PACN267747 PPA1113PPA1683PPA1115PPA1111
OCAR504832 OCAR_7061OCAR_7066OCAR_7065
NWIN323098 NWI_1208NWI_1210NWI_1206NWI_1207
NSP35761 NOCA_1808NOCA_1812NOCA_1806
NOCE323261 NOC_0218NOC_0906NOC_1740NOC_0904
NMUL323848 NMUL_A1404NMUL_A1402NMUL_A1401NMUL_A0717
NHAM323097 NHAM_1465NHAM_1467NHAM_1463NHAM_1464
MXAN246197 MXAN_3684MXAN_6463MXAN_1534MXAN_3682
MVAN350058 MVAN_3175MVAN_2786MVAN_4302
MTUB419947 MRA_0133MRA_1796MRA_1576MRA_1334
MTUB336982 TBFG_10127TBFG_11812TBFG_11596TBFG_11358
MTBRV RV0126RV1781CRV1564CRV1326C
MTBCDC MT0134MT1831MT1615MT1368
MSUC221988 MS2074MS1122MS1123
MSP409 M446_6807M446_6809M446_6811M446_6806
MSP400668 MMWYL1_1771MMWYL1_1462MMWYL1_1463
MSP266779 MESO_2678MESO_2674MESO_2676MESO_2677
MSP189918 MKMS_5210MKMS_2913MKMS_5204MKMS_3935
MSP164757 MJLS_5501MJLS_2899MJLS_3097MJLS_3847
MSP164756 MMCS_5121MMCS_2869MMCS_5115MMCS_3861
MSME246196 MSMEG_6515MSMEG_3673MSMEG_3186MSMEG_4918
MMAG342108 AMB3063AMB3064AMB3065
MGIL350054 MFLV_3723MFLV_3421MFLV_3631MFLV_2343
MFLA265072 MFLA_2611MFLA_1189MFLA_1367
MEXT419610 MEXT_2713MEXT_2711MEXT_3138MEXT_2714
MCAP243233 MCA_0942MCA_1473MCA_0296MCA_1475
MBOV410289 BCG_0160BCG_1814CBCG_1617CBCG_1388C
MBOV233413 MB0131MB1810CMB1591CMB1361C
MAVI243243 MAV_5186MAV_2934MAV_3210MAV_1546
MAER449447 MAE_54130MAE_35070MAE_54030
LXYL281090 LXX11830LXX02210LXX12570
LCHO395495 LCHO_3322LCHO_1887LCHO_3321
LACI272621 LBA1437LBA1710LBA0680
KRAD266940 KRAD_1296KRAD_3529KRAD_3073KRAD_1294
KPNE272620 GKPORF_B0924GKPORF_B3128GKPORF_B3140GKPORF_B3141
HSOM228400 HSM_1369HSM_1367HSM_1368
HSOM205914 HS_0890HS_0888HS_0889
HINF71421 HI_1356HI_1358HI_1357
HINF281310 NTHI1810NTHI1808NTHI1809
HAUR316274 HAUR_1153HAUR_2912HAUR_1279
GTHE420246 GTNG_3215GTNG_2731GTNG_2782
GBET391165 GBCGDNIH1_0751GBCGDNIH1_0748GBCGDNIH1_2172GBCGDNIH1_0750
FTUL458234 FTA_0514FTA_0508FTA_0509
FTUL418136 FTW_1655FTW_1661FTW_1660
FTUL401614 FTN_0518FTN_0512FTN_0513
FTUL393115 FTF0418FTF0412CFTF0413C
FTUL393011 FTH_0486FTH_0480FTH_0481
FTUL351581 FTL_0488FTL_0482FTL_0483
FSP1855 FRANEAN1_1051FRANEAN1_5309FRANEAN1_1070FRANEAN1_1049
FSP106370 FRANCCI3_3679FRANCCI3_1157FRANCCI3_1350FRANCCI3_3681
FRANT MALAPULBGLGB
FPHI484022 FPHI_0322FPHI_0329FPHI_0328
FNUC190304 FN0858FN0799FN0856
FMAG334413 FMG_0201FMG_1034FMG_1039
FALN326424 FRAAL5900FRAAL1852FRAAL2118FRAAL5902
ESP42895 ENT638_2165ENT638_3829ENT638_3839ENT638_3840
EFER585054 EFER_3385EFER_3408EFER_3409
ECOO157 YCJMMALQGLGXGLGB
ECOL83334 ECS1887ECS4258ECS4276ECS4277
ECOL585397 ECED1_1517ECED1_4077ECED1_4106ECED1_4107
ECOL585057 ECIAI39_1660ECIAI39_3897ECIAI39_3912ECIAI39_3913
ECOL585056 ECUMN_4772ECUMN_3875ECUMN_3895ECUMN_3896
ECOL585055 EC55989_1472EC55989_3824EC55989_3841EC55989_3842
ECOL585035 ECS88_1450ECS88_3805ECS88_3829ECS88_3830
ECOL585034 ECIAI1_1334ECIAI1_3560ECIAI1_3577ECIAI1_3578
ECOL481805 ECOLC_2316ECOLC_0297ECOLC_0281ECOLC_0280
ECOL469008 ECBD_2308ECBD_0329ECBD_0311ECBD_0310
ECOL439855 ECSMS35_1813ECSMS35_3697ECSMS35_3713ECSMS35_3714
ECOL413997 ECB_01286ECB_03268ECB_03283ECB_03284
ECOL409438 ECSE_1361ECSE_3683ECSE_3700ECSE_3701
ECOL405955 APECO1_462APECO1_3050APECO1_3026APECO1_3025
ECOL364106 UTI89_C1579UTI89_C3917UTI89_C3940UTI89_C3941
ECOL362663 ECP_1361ECP_3502ECP_3525ECP_3526
ECOL331111 ECE24377A_1519ECE24377A_3892ECE24377A_3910ECE24377A_3911
ECOL316407 ECK1304:JW1302:B1309ECK3403:JW3379:B3416ECK3417:JW3394:B3431ECK3418:JW3395:B3432
ECOL199310 C1780C4193C4218C4219
ECAR218491 ECA4135ECA4150ECA4151
DRAD243230 DR_0933DR_0264DR_1848
DGEO319795 DGEO_0572DGEO_0541DGEO_0981
DDES207559 DDE_2353DDE_0510DDE_2285
CTRA471473 CTLON_0338CTLON_0293CTLON_0241
CTRA471472 CTL0342CTL0298CTL0245
CSP501479 CSE45_1772CSE45_2018CSE45_4450CSE45_2014
CPRO264201 PC0745PC1106PC1761
CPNE182082 CPB0336CPB0401CPB0494
CPNE138677 CPJ0326CPJ0388CPJ0475
CPNE115713 CPN0326CPN0388CPN0475
CPNE115711 CP_0431CP_0367CP_0279
CPER289380 CPR_2333CPR_1558CPR_1559
CPER195103 CPF_2647CPF_1839CPF_1840
CPER195102 CPE2338CPE1587CPE1588
CMUR243161 TC_0362TC_0312TC_0257
CMIC443906 CMM_1714CMM_1432CMM_1397
CMIC31964 CMS1958CMS1042CMS0785
CJEI306537 JK0596JK0780JK1330
CJAP155077 CJA_2618CJA_1882CJA_1885
CGLU196627 CG2529CG2523CG2310CG1381
CFEL264202 CF0551CF0600CF0740
CEFF196164 CE2205CE2196CE2010CE1323
CDIP257309 DIP1726DIP1572DIP1065
CCAV227941 CCA_00456CCA_00408CCA_00268
CBOT508765 CLL_A2124CLL_A0976CLL_A2978CLL_A3417
CBEI290402 CBEI_2321CBEI_0233CBEI_2468CBEI_4909
CABO218497 CAB442CAB394CAB262
BXEN266265 BXE_B2862BXE_B2866BXE_B1322BXE_B2863
BWEI315730 BCERKBAB4_3843BCERKBAB4_4533BCERKBAB4_4710
BVIE269482 BCEP1808_5813BCEP1808_5809BCEP1808_5811BCEP1808_5812
BTHE226186 BT_2146BT_4689BT_0771
BTHA271848 BTH_II0938BTH_II0938BTH_II0939
BSUB BSU07810BSU29930BSU30980
BSP376 BRADO5816BRADO5815BRADO5818BRADO5817
BSP36773 BCEP18194_C7033BCEP18194_C7029BCEP18194_C7031BCEP18194_C7032
BPSE320373 BURPS668_1544BURPS668_1540BURPS668_1542BURPS668_1543
BPSE320372 BURPS1710B_A1871BURPS1710B_A1867BURPS1710B_A1869BURPS1710B_A1870
BPSE272560 BPSL2075BPSL2079BPSL2077BPSL2076
BPET94624 BPET2370BPET2366BPET2368BPET2369
BPER257313 BP1329BP1327BP1328
BPAR257311 BPP2897BPP2893BPP2892
BMAL320389 BMA10247_0621BMA10247_0616BMA10247_0618
BMAL320388 BMASAVP1_A1340BMASAVP1_A1335BMASAVP1_A1337
BMAL243160 BMA_0821BMA_0817BMA_0819
BLON206672 BL0536BL0527BL0982BL0999
BJAP224911 BLR6767BLL6765BLR6769BLR6768
BFRA295405 BF3828BF3261BF2243
BFRA272559 BF3620BF3100BF2338
BCER405917 BCE_4066BCE_4844BCE_5028
BCER315749 BCER98_2716BCER98_3365BCER98_3504
BCER226900 BC_4015BC_2734BC_4867
BCEN331272 BCEN2424_6498BCEN2424_6494BCEN2424_6496BCEN2424_6497
BCEN331271 BCEN_1331BCEN_1335BCEN_1333BCEN_1332
BBRO257310 BB2863BB2867BB2865BB2864
BAMB398577 BAMMC406_6321BAMMC406_6325BAMMC406_6323BAMMC406_6322
BAMB339670 BAMB_5591BAMB_5595BAMB_5593BAMB_5592
ASP76114 EBA7001EBA6918EBA6923EBA7003
ASP62928 AZO1727AZO1799AZO1794AZO1725
ASP1667 ARTH_2030ARTH_2153ARTH_2909ARTH_0739
ASAL382245 ASA_0760ASA_0762ASA_0761
APLE434271 APJL_1252APJL_0363APJL_0362
APLE416269 APL_1240APL_0347APL_0346
ANAE240017 ANA_2264ANA_1300ANA_0880ANA_1351
ALAI441768 ACL_0656ACL_0655ACL_0529
AHYD196024 AHA_3617AHA_3615AHA_3616
ADEH290397 ADEH_3002ADEH_0294ADEH_1056ADEH_3716
ACRY349163 ACRY_2935ACRY_2938ACRY_2937ACRY_2936
ACEL351607 ACEL_0678ACEL_1601ACEL_0681ACEL_0676
ACAU438753 AZC_4115AZC_4117AZC_2750AZC_4116
ABAC204669 ACID345_1485ACID345_3295ACID345_0241
AAVE397945 AAVE_2022AAVE_2985AAVE_2983AAVE_2024
AAUR290340 AAUR_0909AAUR_2897AAUR_0910


Organism features enriched in list (features available for 253 out of the 276 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00386702992
Arrangment:Clusters 0.0007166117
Disease:Bubonic_plague 0.006456366
Disease:Dysentery 0.006456366
Disease:Gastroenteritis 0.00235081113
Disease:Pharyngitis 0.001180488
Disease:Pneumonia 0.00467411012
Disease:bronchitis_and_pneumonitis 0.001180488
Endospores:No 0.000014468211
Endospores:Yes 0.00755881553
GC_Content_Range4:0-40 1.381e-1646213
GC_Content_Range4:60-100 1.336e-15104145
GC_Content_Range7:0-30 2.499e-6647
GC_Content_Range7:30-40 8.675e-1040166
GC_Content_Range7:50-60 0.006511557107
GC_Content_Range7:60-70 1.741e-1395134
GC_Content_Range7:70-100 0.0091311911
Genome_Size_Range5:0-2 1.192e-1231155
Genome_Size_Range5:2-4 1.032e-659197
Genome_Size_Range5:4-6 3.051e-16125184
Genome_Size_Range5:6-10 4.383e-83847
Genome_Size_Range9:0-1 0.0000316227
Genome_Size_Range9:1-2 2.395e-829128
Genome_Size_Range9:2-3 0.000065434120
Genome_Size_Range9:4-5 0.00001936096
Genome_Size_Range9:5-6 2.722e-106588
Genome_Size_Range9:6-8 6.414e-73138
Gram_Stain:Gram_Neg 6.235e-9178333
Habitat:Multiple 0.000031599178
Habitat:Specialized 0.00150741353
Optimal_temp.:25-30 0.00002911719
Optimal_temp.:30-37 0.0004209118
Oxygen_Req:Anaerobic 1.410e-918102
Oxygen_Req:Facultative 0.0009260104201
Pathogenic_in:Human 0.0092886104213
Pathogenic_in:No 0.003705084226
Shape:Coccus 0.00186972482
Shape:Rod 2.866e-15196347
Shape:Sphere 0.0002461119
Shape:Spiral 6.558e-6334
Temp._range:Mesophilic 3.725e-7228473



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 299
Effective number of orgs (counting one per cluster within 468 clusters): 232

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM40
XFAS405440 ncbi Xylella fastidiosa M120
XFAS183190 ncbi Xylella fastidiosa Temecula10
XFAS160492 ncbi Xylella fastidiosa 9a5c0
XAUT78245 ncbi Xanthobacter autotrophicus Py21
WSUC273121 ncbi Wolinella succinogenes DSM 17400
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
VEIS391735 ncbi Verminephrobacter eiseniae EF01-20
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTHE262724 ncbi Thermus thermophilus HB271
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB40
TSP28240 Thermotoga sp.1
TSP1755 Thermoanaerobacter sp.0
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332230
TPET390874 ncbi Thermotoga petrophila RKU-11
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TMAR243274 ncbi Thermotoga maritima MSB81
TLET416591 ncbi Thermotoga lettingae TMO1
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12510
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen0
STRO369723 ncbi Salinispora tropica CNB-4400
STOK273063 ncbi Sulfolobus tokodaii 71
STHE322159 ncbi Streptococcus thermophilus LMD-91
STHE299768 ncbi Streptococcus thermophilus CNRZ10661
STHE292459 ncbi Symbiobacterium thermophilum IAM 148630
STHE264199 ncbi Streptococcus thermophilus LMG 183111
SSP644076 Silicibacter sp. TrichCH4B1
SSP387093 ncbi Sulfurovum sp. NBC37-11
SSP292414 ncbi Ruegeria sp. TM10401
SSOL273057 ncbi Sulfolobus solfataricus P21
SSED425104 ncbi Shewanella sediminis HAW-EB30
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153051
SPYO370554 ncbi Streptococcus pyogenes MGAS107501
SPYO370553 ncbi Streptococcus pyogenes MGAS20961
SPYO370552 ncbi Streptococcus pyogenes MGAS102701
SPYO370551 ncbi Streptococcus pyogenes MGAS94291
SPYO319701 ncbi Streptococcus pyogenes MGAS61801
SPYO293653 ncbi Streptococcus pyogenes MGAS50051
SPYO286636 ncbi Streptococcus pyogenes MGAS103941
SPYO198466 ncbi Streptococcus pyogenes MGAS3151
SPYO193567 ncbi Streptococcus pyogenes SSI-11
SPYO186103 ncbi Streptococcus pyogenes MGAS82321
SPYO160490 ncbi Streptococcus pyogenes M1 GAS1
SPEA398579 ncbi Shewanella pealeana ATCC 7003450
SMAR399550 ncbi Staphylothermus marinus F10
SLAC55218 Ruegeria lacuscaerulensis0
SHAL458817 ncbi Shewanella halifaxensis HAW-EB40
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14351
SGLO343509 ncbi Sodalis glossinidius morsitans1
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23380
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122281
SEPI176279 ncbi Staphylococcus epidermidis RP62A1
SDEN318161 ncbi Shewanella denitrificans OS2170
SAUR93062 ncbi Staphylococcus aureus aureus COL1
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83251
SAUR426430 ncbi Staphylococcus aureus aureus Newman1
SAUR418127 ncbi Staphylococcus aureus aureus Mu31
SAUR367830 Staphylococcus aureus aureus USA3001
SAUR359787 ncbi Staphylococcus aureus aureus JH11
SAUR359786 ncbi Staphylococcus aureus aureus JH91
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4761
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2520
SAUR273036 ncbi Staphylococcus aureus RF1221
SAUR196620 ncbi Staphylococcus aureus aureus MW21
SAUR158879 ncbi Staphylococcus aureus aureus N3151
SAUR158878 ncbi Staphylococcus aureus aureus Mu501
SARE391037 ncbi Salinispora arenicola CNS-2050
SALA317655 ncbi Sphingopyxis alaskensis RB22560
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6391
RTYP257363 ncbi Rickettsia typhi Wilmington0
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RPOM246200 ncbi Ruegeria pomeroyi DSS-30
RMET266264 ncbi Ralstonia metallidurans CH340
RMAS416276 ncbi Rickettsia massiliae MTU50
RFEL315456 ncbi Rickettsia felis URRWXCal20
RCON272944 ncbi Rickettsia conorii Malish 70
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RAKA293614 ncbi Rickettsia akari Hartford0
PTHE370438 ncbi Pelotomaculum thermopropionicum SI1
PSP56811 Psychrobacter sp.0
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-10
PSP296591 ncbi Polaromonas sp. JS6660
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257451
PLUT319225 ncbi Chlorobium luteolum DSM 2731
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO11
PISL384616 ncbi Pyrobaculum islandicum DSM 41841
PHOR70601 ncbi Pyrococcus horikoshii OT30
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1250
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PCRY335284 ncbi Psychrobacter cryohalolentis K50
PCAR338963 ncbi Pelobacter carbinolicus DSM 23800
PAST100379 Onion yellows phytoplasma1
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135141
PARC259536 ncbi Psychrobacter arcticus 273-40
PAER178306 ncbi Pyrobaculum aerophilum IM21
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
OIHE221109 ncbi Oceanobacillus iheyensis HTE8311
OANT439375 ncbi Ochrobactrum anthropi ATCC 491880
NSP387092 ncbi Nitratiruptor sp. SB155-21
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
NMEN374833 ncbi Neisseria meningitidis 0534420
NMEN272831 ncbi Neisseria meningitidis FAM180
NMEN122587 ncbi Neisseria meningitidis Z24910
NMEN122586 ncbi Neisseria meningitidis MC580
NGON242231 ncbi Neisseria gonorrhoeae FA 10900
NEUT335283 ncbi Nitrosomonas eutropha C911
NEUR228410 ncbi Nitrosomonas europaea ATCC 197181
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE264732 ncbi Moorella thermoacetica ATCC 390731
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MSYN262723 ncbi Mycoplasma synoviae 531
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPET420662 ncbi Methylibium petroleiphilum PM10
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR394221 ncbi Maricaulis maris MCS100
MMAR267377 ncbi Methanococcus maripaludis S20
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBAR269797 ncbi Methanosarcina barkeri Fusaro1
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53341
LSPH444177 ncbi Lysinibacillus sphaericus C3-410
LSAK314315 ncbi Lactobacillus sakei sakei 23K1
LREU557436 ncbi Lactobacillus reuteri DSM 200161
LPNE400673 ncbi Legionella pneumophila Corby0
LPNE297246 ncbi Legionella pneumophila Paris0
LPNE297245 ncbi Legionella pneumophila Lens0
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 10
LMON265669 ncbi Listeria monocytogenes 4b F23651
LMON169963 ncbi Listeria monocytogenes EGD-e1
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82931
LLAC272623 ncbi Lactococcus lactis lactis Il14031
LJOH257314 ncbi Lactobacillus johnsonii NCC 5331
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-000
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1301
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566011
LINN272626 ncbi Listeria innocua Clip112621
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333231
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3651
LCAS321967 ncbi Lactobacillus casei ATCC 3341
LBRE387344 ncbi Lactobacillus brevis ATCC 3671
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1971
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5501
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)1
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)1
JSP375286 ncbi Janthinobacterium sp. Marseille0
ILOI283942 ncbi Idiomarina loihiensis L2TR0
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSAL478009 ncbi Halobacterium salinarum R10
HPYL85963 ncbi Helicobacter pylori J990
HPYL357544 ncbi Helicobacter pylori HPAG10
HPY ncbi Helicobacter pylori 266950
HNEP81032 Hyphomonas neptunium0
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMOD498761 ncbi Heliobacterium modesticaldum Ice11
HMAR272569 ncbi Haloarcula marismortui ATCC 430491
HHEP235279 ncbi Helicobacter hepaticus ATCC 514490
HDUC233412 ncbi Haemophilus ducreyi 35000HP0
HCHE349521 ncbi Hahella chejuensis KCTC 23961
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HARS204773 ncbi Herminiimonas arsenicoxydans0
HACI382638 ncbi Helicobacter acinonychis Sheeba0
GVIO251221 ncbi Gloeobacter violaceus PCC 74211
GOXY290633 ncbi Gluconobacter oxydans 621H0
GMET269799 ncbi Geobacter metallireducens GS-151
GKAU235909 ncbi Geobacillus kaustophilus HTA4261
GFOR411154 ncbi Gramella forsetii KT08031
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B11
FJOH376686 ncbi Flavobacterium johnsoniae UW1011
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ELIT314225 ncbi Erythrobacter litoralis HTCC25940
EFAE226185 ncbi Enterococcus faecalis V5831
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough1
DSP255470 ncbi Dehalococcoides sp. CBDB10
DSP216389 ncbi Dehalococcoides sp. BAV10
DSHI398580 ncbi Dinoroseobacter shibae DFL 121
DPSY177439 ncbi Desulfotalea psychrophila LSv540
DNOD246195 ncbi Dichelobacter nodosus VCS1703A0
DETH243164 ncbi Dehalococcoides ethenogenes 1950
DARO159087 ncbi Dechloromonas aromatica RCB1
CVIO243365 ncbi Chromobacterium violaceum ATCC 124720
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA0
CTET212717 ncbi Clostridium tetani E880
CTEP194439 ncbi Chlorobium tepidum TLS1
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CSP78 Caulobacter sp.0
CSAL290398 ncbi Chromohalobacter salexigens DSM 30431
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)0
CPSY167879 ncbi Colwellia psychrerythraea 34H1
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10620
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CKLU431943 ncbi Clostridium kluyveri DSM 5551
CJEJ407148 ncbi Campylobacter jejuni jejuni 811160
CJEJ360109 ncbi Campylobacter jejuni doylei 269.970
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1760
CJEJ195099 ncbi Campylobacter jejuni RM12210
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111680
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29010
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3810
CFET360106 ncbi Campylobacter fetus fetus 82-400
CCUR360105 ncbi Campylobacter curvus 525.920
CCON360104 ncbi Campylobacter concisus 138260
CCHL340177 ncbi Chlorobium chlorochromatii CaD31
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1110
CBUR360115 ncbi Coxiella burnetii RSA 3310
CBUR227377 ncbi Coxiella burnetii RSA 4930
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto0
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6570
CBOT498213 ncbi Clostridium botulinum B1 str. Okra0
CBOT441772 ncbi Clostridium botulinum F str. Langeland0
CBOT441771 ncbi Clostridium botulinum A str. Hall0
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193970
CBOT36826 Clostridium botulinum A0
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN0
CBLO203907 ncbi Candidatus Blochmannia floridanus0
CAULO ncbi Caulobacter crescentus CB151
CACE272562 ncbi Clostridium acetobutylicum ATCC 8241
BTUR314724 ncbi Borrelia turicatae 91E1350
BTRI382640 ncbi Bartonella tribocorum CIP 1054760
BSUI470137 ncbi Brucella suis ATCC 234450
BSUI204722 ncbi Brucella suis 13300
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)0
BQUI283165 ncbi Bartonella quintana Toulouse0
BPUM315750 ncbi Bacillus pumilus SAFR-0320
BOVI236 Brucella ovis0
BMEL359391 ncbi Brucella melitensis biovar Abortus 23080
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M0
BHER314723 ncbi Borrelia hermsii DAH0
BHEN283166 ncbi Bartonella henselae Houston-10
BHAL272558 ncbi Bacillus halodurans C-1251
BGAR290434 ncbi Borrelia garinii PBi0
BCLA66692 ncbi Bacillus clausii KSM-K160
BCIC186490 Candidatus Baumannia cicadellinicola0
BCAN483179 ncbi Brucella canis ATCC 233650
BBUR224326 ncbi Borrelia burgdorferi B310
BBAC360095 ncbi Bartonella bacilliformis KC5830
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1000
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)0
BAMY326423 ncbi Bacillus amyloliquefaciens FZB421
BAFZ390236 ncbi Borrelia afzelii PKo0
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9410
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP62977 ncbi Acinetobacter sp. ADP10
ASP232721 ncbi Acidovorax sp. JS420
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K10
AORE350688 ncbi Alkaliphilus oremlandii OhILAs0
AMAR234826 ncbi Anaplasma marginale St. Maries0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232701
ABUT367737 ncbi Arcobacter butzleri RM40180
ABOR393595 ncbi Alcanivorax borkumensis SK20
ABAU360910 ncbi Bordetella avium 197N0


Names of the homologs of the genes in the group in each of these orgs
  G6647   EG10561   EG10381   EG10378   
ZMOB264203
XFAS405440
XFAS183190
XFAS160492
XAUT78245 XAUT_2310
WSUC273121
WPIP955
WPIP80849
VEIS391735
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496
TWHI203267
TVOL273116
TTHE262724 TT_C0897
TTEN273068
TSP28240 TRQ2_0978
TSP1755
TPSE340099
TPET390874 TPET_0959
TPEN368408
TPAL243276
TMAR243274 TM_1845
TLET416591 TLET_0139
TKOD69014
TDEN326298
TACI273075
SWOL335541
STRO369723
STOK273063 ST0928
STHE322159 STER_1017
STHE299768 STR1013
STHE292459
STHE264199 STU1013
SSP644076 SCH4B_1259
SSP387093 SUN_1268
SSP292414 TM1040_0418
SSOL273057 SSO2094
SSED425104
SSAP342451 SSP1246
SPYO370554 MGAS10750_SPY1875
SPYO370553 MGAS2096_SPY1816
SPYO370552 MGAS10270_SPY1850
SPYO370551 MGAS9429_SPY1794
SPYO319701 M28_SPY1767
SPYO293653 M5005_SPY1783
SPYO286636 M6_SPY1782
SPYO198466 SPYM3_1785
SPYO193567 SPS1782
SPYO186103 SPYM18_2154
SPYO160490 SPY2096
SPEA398579
SMAR399550
SLAC55218
SHAL458817
SHAE279808 SH1408
SGLO343509 SG2323
SERY405948
SEPI176280 SE_1191
SEPI176279 SERP1070
SDEN318161
SAUR93062 SACOL1551
SAUR93061 SAOUHSC_01601
SAUR426430 NWMN_1414
SAUR418127 SAHV_1495
SAUR367830 SAUSA300_1456
SAUR359787 SAURJH1_1595
SAUR359786 SAURJH9_1564
SAUR282459 SAS1447
SAUR282458
SAUR273036 SAB1368C
SAUR196620 MW1461
SAUR158879 SA1338
SAUR158878 SAV1507
SARE391037
SALA317655
SACI330779 SACI_1439
RTYP257363
RRIC452659
RRIC392021
RPRO272947
RPOM246200
RMET266264
RMAS416276
RFEL315456
RCON272944
RCAN293613
RBEL391896
RBEL336407
RAKA293614
PTHE370438 PTH_1585
PSP56811
PSP312153
PSP296591
PPEN278197 PEPE_0521
PLUT319225 PLUT_2029
PLUM243265 PLU0469
PISL384616 PISL_1316
PHOR70601
PHAL326442
PFUR186497
PCRY335284
PCAR338963
PAST100379 PAM723
PARS340102 PARS_0206
PARC259536
PAER178306 PAE1209
PABY272844
OTSU357244
OIHE221109 OB0406
OANT439375
NSP387092 NIS_0936
NSEN222891
NPHA348780
NMEN374833
NMEN272831
NMEN122587
NMEN122586
NGON242231
NEUT335283 NEUT_1291
NEUR228410 NE2029
MTHE349307
MTHE264732 MOTH_1850
MTHE187420
MSYN262723 MS53_0108
MSTA339860
MSED399549
MPUL272635
MPNE272634
MPET420662
MPEN272633
MMYC272632
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR394221
MMAR267377
MLEP272631
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGEN243273
MFLO265311
MCAP340047
MBUR259564
MBAR269797 MBAR_A2517
MART243272
MAEO419665
LWEL386043 LWE2770
LSPH444177
LSAK314315 LSA1791
LREU557436 LREU_1542
LPNE400673
LPNE297246
LPNE297245
LPNE272624
LMON265669 LMOF2365_2831
LMON169963 LMO2840
LMES203120 LEUM_0384
LLAC272623 L94405
LJOH257314 LJ_0262
LINT363253
LINT267671 LIC_12290
LINT189518 LA1466
LINN272626 LIN2973
LHEL405566
LGAS324831 LGAS_0222
LDEL390333
LDEL321956 LBUL_0059
LCAS321967 LSEI_2040
LBRE387344 LVIS_2180
LBOR355277 LBJ_0964
LBOR355276 LBL_2069
LBIF456481 LEPBI_I1425
LBIF355278 LBF_1371
JSP375286
ILOI283942
IHOS453591
HWAL362976
HSP64091
HSAL478009
HPYL85963
HPYL357544
HPY
HNEP81032
HMUK485914
HMOD498761 HM1_1305
HMAR272569 RRNAC0224
HHEP235279
HDUC233412
HCHE349521 HCH_00269
HBUT415426
HARS204773
HACI382638
GVIO251221 GLR1306
GOXY290633
GMET269799 GMET_3469
GKAU235909 GK2827
GFOR411154 GFO_2997
FNOD381764 FNOD_1427
FJOH376686 FJOH_2745
ERUM302409
ERUM254945
ELIT314225
EFAE226185 EF_1348
ECHA205920
ECAN269484
DVUL882 DVU_2243
DSP255470
DSP216389
DSHI398580 DSHI_1824
DPSY177439
DNOD246195
DETH243164
DARO159087 DARO_0586
CVIO243365
CVES412965
CTET212717
CTEP194439 CT_2088
CSUL444179
CSP78
CSAL290398 CSAL_2588
CRUT413404
CPSY167879 CPS_0506
CPEL335992
CMET456442
CMAQ397948
CKOR374847
CKLU431943 CKL_3498
CJEJ407148
CJEJ360109
CJEJ354242
CJEJ195099
CJEJ192222
CHYD246194
CHOM360107
CFET360106
CCUR360105
CCON360104
CCHL340177 CAG_1983
CBUR434922
CBUR360115
CBUR227377
CBOT536232
CBOT515621
CBOT498213
CBOT441772
CBOT441771
CBOT441770
CBOT36826
CBLO291272
CBLO203907
CAULO CC1135
CACE272562 CAC2679
BTUR314724
BTRI382640
BSUI470137
BSUI204722
BSP107806
BQUI283165
BPUM315750
BOVI236
BMEL359391
BMEL224914
BHER314723
BHEN283166
BHAL272558 BH3264
BGAR290434
BCLA66692
BCIC186490
BCAN483179
BBUR224326
BBAC360095
BBAC264462
BAPH372461
BAPH198804
BAMY326423 RBAM_007980
BAFZ390236
BABO262698
AYEL322098
AURANTIMONAS
ASP62977
ASP232721
APHA212042
APER272557
AORE350688
AMAR234826
AFUL224325
AFER243159 AFE_0272
ABUT367737
ABOR393595
ABAU360910


Organism features enriched in list (features available for 282 out of the 299 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Clusters 0.00006471617
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 0.00030611111
Disease:Wide_range_of_infections 0.00030611111
Disease:pneumonia 0.0037570112
Endospores:No 1.062e-7132211
GC_Content_Range4:0-40 4.212e-15148213
GC_Content_Range4:60-100 2.512e-1530145
GC_Content_Range7:0-30 1.605e-63847
GC_Content_Range7:30-40 2.265e-8110166
GC_Content_Range7:60-70 3.980e-1329134
GC_Content_Range7:70-100 0.0067694111
Genome_Size_Range5:0-2 3.874e-17119155
Genome_Size_Range5:2-4 1.191e-6122197
Genome_Size_Range5:4-6 1.836e-2137184
Genome_Size_Range5:6-10 1.241e-9447
Genome_Size_Range9:0-1 7.220e-62427
Genome_Size_Range9:1-2 1.408e-1195128
Genome_Size_Range9:2-3 0.000092576120
Genome_Size_Range9:3-4 0.00992014677
Genome_Size_Range9:4-5 2.035e-62696
Genome_Size_Range9:5-6 1.644e-141188
Genome_Size_Range9:6-8 3.704e-8338
Gram_Stain:Gram_Neg 0.0000382138333
Habitat:Host-associated 0.0007517117206
Habitat:Multiple 0.000012063178
Habitat:Specialized 0.00635263453
Habitat:Terrestrial 0.0050688831
Optimal_temp.:25-30 0.0004454219
Optimal_temp.:30-37 0.00003221718
Oxygen_Req:Anaerobic 1.089e-671102
Oxygen_Req:Facultative 0.003214183201
Oxygen_Req:Microaerophilic 0.00768151418
Shape:Coccus 0.00126315282
Shape:Irregular_coccus 0.00006471617
Shape:Rod 1.098e-15121347
Shape:Sphere 0.00103381619
Shape:Spiral 4.226e-62934
Temp._range:Hyperthermophilic 9.145e-72223
Temp._range:Mesophilic 1.818e-6207473



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
PWY-5941 (glycogen degradation II)3792610.6163
GLYCOGENSYNTH-PWY (glycogen biosynthesis I (from ADP-D-Glucose))2832160.5882
PWY-622 (starch biosynthesis)1471250.4557
PWY-5148 (acyl-CoA hydrolysis)2271680.4528
PWY-4041 (γ-glutamyl cycle)2791890.4250
GLYCOCAT-PWY (glycogen degradation I)2461710.4100



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG10561   EG10381   EG10378   
G66470.9990880.9989190.999515
EG105610.9995420.999593
EG103810.999643
EG10378



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PAIRWISE BLAST SCORES:

  G6647   EG10561   EG10381   EG10378   
G66470.0f0---
EG10561-0.0f0--
EG10381--0.0f0-
EG10378---0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- GLYCOCAT-PWY (glycogen degradation I) (degree of match pw to cand: 0.286, degree of match cand to pw: 0.500, average score: 0.899)
  Genes in pathway or complex:
   *in cand* 0.9996 0.9991 EG10561 (malQ) AMYLOMALT-MONOMER (amylomaltase)
             0.9946 0.9804 EG10380 (glgP) GLYCOPHOSPHORYL-MONOMER (GlgP)
             0.8159 0.5366 EG12144 (pgm) PHOSPHOGLUCMUT-MONOMER (phosphoglucomutase)
   *in cand* 0.9995 0.9989 EG10381 (glgX) EG10381-MONOMER (glycogen phosphorylase-limit dextrin α-1,6-glucohydrolase)
             0.9963 0.9871 EG10560 (malP) MALDEXPHOSPHORYL-MONOMER (maltodextrin phosphorylase monomer)
             0.9632 0.8653 EG10565 (malZ) MALTODEXGLUCOSID-MONOMER (maltodextrin glucosidase)
             0.6674 0.3519 EG12957 (glk) GLUCOKIN-MONOMER (glucokinase)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9997 0.9995 EG10378 (glgB) GLYCOGEN-BRANCH-MONOMER (1,4-α-glucan branching enzyme)
   *in cand* 0.9994 0.9989 G6647 (ycjM) G6647-MONOMER (predicted glucosyltransferase)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10378 EG10381 (centered at EG10378)
EG10561 (centered at EG10561)
G6647 (centered at G6647)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G6647   EG10561   EG10381   EG10378   
272/623287/623296/623324/623
AAEO224324:0:Tyes-1-0
AAUR290340:2:Tyes0-19371
AAVE397945:0:Tyes09469442
ABAC204669:0:Tyes1254-30770
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YPSE349747:2:Tno-01213



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