CANDIDATE ID: 1026

NUMBER OF GENES: 4
AVERAGE SCORE:    9.9997100e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.1000001e-4

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages

GENE LIST:

- EG11169 (ttdB) (b3062)
   Products of gene:
     - TTDB-MONOMER (L-tartrate dehydratase, β subunit)
     - TTDB-CPLX (β subunit complex)
     - LTARTDEHYDRA-CPLX (L-tartrate dehydratase)
       Reactions:
        L-tartrate  =  oxaloacetate + H2O

- EG11168 (ttdA) (b3061)
   Products of gene:
     - TTDA-MONOMER (L-tartrate dehydratase, α subunit)
     - TTDA-CPLX (α subunit complex)
     - LTARTDEHYDRA-CPLX (L-tartrate dehydratase)
       Reactions:
        L-tartrate  =  oxaloacetate + H2O

- EG10357 (fumB) (b4122)
   Products of gene:
     - FUMB-MONOMER (fumarase B monomer)
     - FUMARASE-B (fumarase B)
       Reactions:
        (S)-malate  =  fumarate + H2O
         In pathways
         PWY-5088 (PWY-5088)
         GLYCOLYSIS-TCA-GLYOX-BYPASS (superpathway of glycolysis, pyruvate dehydrogenase, TCA, and glyoxylate bypass)
         TCA-GLYOX-BYPASS (superpathway of glyoxylate bypass and TCA)
         PWY-6146 (PWY-6146)
         PWY-5464 (PWY-5464)
         P108-PWY (P108-PWY)
         ANARESP1-PWY (respiration (anaerobic))
         P105-PWY (P105-PWY)
         PWY-5392 (PWY-5392)
         TCA (TCA cycle)
         P42-PWY (P42-PWY)
         PWY-5690 (PWY-5690)
         REDCITCYC (REDCITCYC)
         PWY-5913 (PWY-5913)
         P23-PWY (P23-PWY)
         FERMENTATION-PWY (mixed acid fermentation)
         PWY-561 (PWY-561)

- EG10356 (fumA) (b1612)
   Products of gene:
     - FUMA-MONOMER (fumarase A monomer)
     - FUMARASE-A (fumarase A)
       Reactions:
        (S)-malate  =  fumarate + H2O
         In pathways
         PWY-5088 (PWY-5088)
         GLYCOLYSIS-TCA-GLYOX-BYPASS (superpathway of glycolysis, pyruvate dehydrogenase, TCA, and glyoxylate bypass)
         TCA-GLYOX-BYPASS (superpathway of glyoxylate bypass and TCA)
         PWY-6146 (PWY-6146)
         PWY-5464 (PWY-5464)
         P108-PWY (P108-PWY)
         ANARESP1-PWY (respiration (anaerobic))
         P105-PWY (P105-PWY)
         PWY-5392 (PWY-5392)
         TCA (TCA cycle)
         P42-PWY (P42-PWY)
         PWY-5690 (PWY-5690)
         REDCITCYC (REDCITCYC)
         PWY-5913 (PWY-5913)
         P23-PWY (P23-PWY)
         FERMENTATION-PWY (mixed acid fermentation)
         PWY-561 (PWY-561)

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ORGANISMS CONTAINING AT LEAST 3 GENES FROM THE GROUP:

Total number of orgs: 300
Effective number of orgs (counting one per cluster within 468 clusters): 217

Organism list
Homologs in each organism in the list
Features enriched in organism list

Follow (ncbi) link, when present, to find the set of organism features for each organism

Org ID	Org Name	# genes in group found in org
ZMOB264203 ncbi	Zymomonas mobilis mobilis ZM4	4
YPSE349747 ncbi	Yersinia pseudotuberculosis IP 31758	3
YPSE273123 ncbi	Yersinia pseudotuberculosis IP 32953	3
YPES386656 ncbi	Yersinia pestis Pestoides F	3
YPES377628 ncbi	Yersinia pestis Nepal516	3
YPES360102 ncbi	Yersinia pestis Antiqua	3
YPES349746 ncbi	Yersinia pestis Angola	3
YPES214092 ncbi	Yersinia pestis CO92	3
YPES187410 ncbi	Yersinia pestis KIM 10	3
YENT393305 ncbi	Yersinia enterocolitica enterocolitica 8081	3
XORY360094 ncbi	Xanthomonas oryzae pv. oryzae PXO99A	4
XORY342109 ncbi	Xanthomonas oryzae pv. oryzae MAFF 311018	4
XORY291331 ncbi	Xanthomonas oryzae pv. oryzae KACC10331	4
XFAS405440 ncbi	Xylella fastidiosa M12	4
XFAS183190 ncbi	Xylella fastidiosa Temecula1	4
XFAS160492 ncbi	Xylella fastidiosa 9a5c	4
XCAM487884	Xanthomonas campestris pv. paulliniae	4
XCAM316273 ncbi	Xanthomonas campestris pv. vesicatoria str. 85-10	4
XCAM314565 ncbi	Xanthomonas campestris pv. campestris str. 8004	4
XCAM190485 ncbi	Xanthomonas campestris pv. campestris str. ATCC 33913	4
XAXO190486 ncbi	Xanthomonas axonopodis pv. citri str. 306	4
XAUT78245 ncbi	Xanthobacter autotrophicus Py2	4
WSUC273121 ncbi	Wolinella succinogenes DSM 1740	4
VVUL216895 ncbi	Vibrio vulnificus CMCP6	4
VVUL196600 ncbi	Vibrio vulnificus YJ016	4
VPAR223926 ncbi	Vibrio parahaemolyticus RIMD 2210633	4
VFIS312309 ncbi	Vibrio fischeri ES114	4
VEIS391735 ncbi	Verminephrobacter eiseniae EF01-2	4
VCHO345073 ncbi	Vibrio cholerae O395	4
VCHO ncbi	Vibrio cholerae O1 biovar El Tor str. N16961	4
UMET351160 ncbi	uncultured methanogenic archaeon RC-I	4
TTUR377629 ncbi	Teredinibacter turnerae T7901	4
TTEN273068 ncbi	Thermoanaerobacter tengcongensis MB4	4
TSP28240	Thermotoga sp.	4
TSP1755	Thermoanaerobacter sp.	4
TPSE340099 ncbi	Thermoanaerobacter pseudethanolicus ATCC 33223	4
TPET390874 ncbi	Thermotoga petrophila RKU-1	4
TMAR243274 ncbi	Thermotoga maritima MSB8	4
TLET416591 ncbi	Thermotoga lettingae TMO	3
TKOD69014 ncbi	Thermococcus kodakarensis KOD1	4
TDEN243275 ncbi	Treponema denticola ATCC 35405	4
SWOL335541 ncbi	Syntrophomonas wolfei wolfei Goettingen	3
STYP99287 ncbi	Salmonella enterica enterica serovar Typhimurium str. LT2	4
STRO369723 ncbi	Salinispora tropica CNB-440	3
STHE292459 ncbi	Symbiobacterium thermophilum IAM 14863	4
SSP94122 ncbi	Shewanella sp. ANA-3	4
SSP387093 ncbi	Sulfurovum sp. NBC37-1	4
SSON300269 ncbi	Shigella sonnei Ss046	4
SSED425104 ncbi	Shewanella sediminis HAW-EB3	4
SPRO399741 ncbi	Serratia proteamaculans 568	3
SPEA398579 ncbi	Shewanella pealeana ATCC 700345	4
SONE211586 ncbi	Shewanella oneidensis MR-1	4
SLOI323850 ncbi	Shewanella loihica PV-4	4
SHIGELLA ncbi	Shigella flexneri 2a str. 2457T	4
SHAL458817 ncbi	Shewanella halifaxensis HAW-EB4	4
SFUM335543 ncbi	Syntrophobacter fumaroxidans MPOB	3
SFLE373384 ncbi	Shigella flexneri 5 str. 8401	4
SFLE198214 ncbi	Shigella flexneri 2a str. 301	4
SERY405948 ncbi	Saccharopolyspora erythraea NRRL 2338	3
SENT454169 ncbi	Salmonella enterica enterica serovar Heidelberg str. SL476	4
SENT321314 ncbi	Salmonella enterica enterica serovar Choleraesuis str. SC-B67	4
SENT295319 ncbi	Salmonella enterica enterica serovar Paratyphi A str. ATCC 9150	4
SENT220341 ncbi	Salmonella enterica enterica serovar Typhi str. CT18	4
SENT209261 ncbi	Salmonella enterica enterica serovar Typhi str. Ty2	4
SDYS300267 ncbi	Shigella dysenteriae Sd197	3
SDEN318161 ncbi	Shewanella denitrificans OS217	4
SDEG203122 ncbi	Saccharophagus degradans 2-40	4
SCO ncbi	Streptomyces coelicolor A3(2)	3
SBOY300268 ncbi	Shigella boydii Sb227	4
SBAL402882 ncbi	Shewanella baltica OS185	4
SBAL399599 ncbi	Shewanella baltica OS195	4
SAVE227882 ncbi	Streptomyces avermitilis MA-4680	3
SARE391037 ncbi	Salinispora arenicola CNS-205	3
SALA317655 ncbi	Sphingopyxis alaskensis RB2256	4
SACI56780 ncbi	Syntrophus aciditrophicus SB	4
RXYL266117 ncbi	Rubrobacter xylanophilus DSM 9941	4
RSP101510 ncbi	Rhodococcus jostii RHA1	4
RSOL267608 ncbi	Ralstonia solanacearum GMI1000	4
RRUB269796 ncbi	Rhodospirillum rubrum ATCC 11170	4
RPOM246200 ncbi	Ruegeria pomeroyi DSS-3	4
RPAL316058 ncbi	Rhodopseudomonas palustris HaA2	3
RPAL316057 ncbi	Rhodopseudomonas palustris BisB5	4
RPAL316056 ncbi	Rhodopseudomonas palustris BisB18	4
RPAL316055 ncbi	Rhodopseudomonas palustris BisA53	4
RPAL258594 ncbi	Rhodopseudomonas palustris CGA009	4
RMET266264 ncbi	Ralstonia metallidurans CH34	4
RLEG216596 ncbi	Rhizobium leguminosarum bv. viciae 3841	3
RFER338969 ncbi	Rhodoferax ferrireducens T118	4
REUT381666 ncbi	Ralstonia eutropha H16	4
REUT264198 ncbi	Ralstonia eutropha JMP134	4
RETL347834 ncbi	Rhizobium etli CFN 42	3
RALB246199	Ruminococcus albus 8	4
PTHE370438 ncbi	Pelotomaculum thermopropionicum SI	4
PSYR223283 ncbi	Pseudomonas syringae pv. tomato str. DC3000	4
PSYR205918 ncbi	Pseudomonas syringae pv. syringae B728a	4
PSTU379731 ncbi	Pseudomonas stutzeri A1501	4
PSP312153 ncbi	Polynucleobacter necessarius asymbioticus QLW-P1DMWA-1	4
PSP296591 ncbi	Polaromonas sp. JS666	4
PRUM264731 ncbi	Prevotella ruminicola 23	3
PPUT76869 ncbi	Pseudomonas putida GB-1	4
PPUT351746 ncbi	Pseudomonas putida F1	4
PPUT160488 ncbi	Pseudomonas putida KT2440	4
PPRO298386 ncbi	Photobacterium profundum SS9	4
PNAP365044 ncbi	Polaromonas naphthalenivorans CJ2	4
PMOB403833 ncbi	Petrotoga mobilis SJ95	4
PMEN399739 ncbi	Pseudomonas mendocina ymp	4
PLUT319225 ncbi	Chlorobium luteolum DSM 273	4
PISL384616 ncbi	Pyrobaculum islandicum DSM 4184	4
PINT246198	Prevotella intermedia 17	4
PING357804 ncbi	Psychromonas ingrahamii 37	4
PHAL326442 ncbi	Pseudoalteromonas haloplanktis TAC125	4
PGIN242619 ncbi	Porphyromonas gingivalis W83	3
PFLU220664 ncbi	Pseudomonas fluorescens Pf-5	4
PFLU216595 ncbi	Pseudomonas fluorescens SBW25	4
PFLU205922 ncbi	Pseudomonas fluorescens Pf0-1	4
PENT384676 ncbi	Pseudomonas entomophila L48	4
PDIS435591 ncbi	Parabacteroides distasonis ATCC 8503	3
PATL342610 ncbi	Pseudoalteromonas atlantica T6c	4
PARS340102 ncbi	Pyrobaculum arsenaticum DSM 13514	4
PAER208964 ncbi	Pseudomonas aeruginosa PAO1	4
PAER208963 ncbi	Pseudomonas aeruginosa UCBPP-PA14	4
PAER178306 ncbi	Pyrobaculum aerophilum IM2	4
OCAR504832 ncbi	Oligotropha carboxidovorans OM5	4
NSP387092 ncbi	Nitratiruptor sp. SB155-2	4
NSP35761	Nocardioides sp.	3
NMEN374833 ncbi	Neisseria meningitidis 053442	4
NMEN272831 ncbi	Neisseria meningitidis FAM18	4
NMEN122587 ncbi	Neisseria meningitidis Z2491	4
NMEN122586 ncbi	Neisseria meningitidis MC58	4
NFAR247156 ncbi	Nocardia farcinica IFM 10152	3
NARO279238 ncbi	Novosphingobium aromaticivorans DSM 12444	4
MTHE264732 ncbi	Moorella thermoacetica ATCC 39073	4
MSTA339860 ncbi	Methanosphaera stadtmanae DSM 3091	3
MSP400668 ncbi	Marinomonas sp. MWYL1	4
MSP266779 ncbi	Chelativorans sp. BNC1	4
MSME246196 ncbi	Mycobacterium smegmatis MC2 155	3
MPET420662 ncbi	Methylibium petroleiphilum PM1	4
MMAZ192952 ncbi	Methanosarcina mazei Go1	4
MMAG342108 ncbi	Magnetospirillum magneticum AMB-1	4
MLOT266835 ncbi	Mesorhizobium loti MAFF303099	4
MKAN190192 ncbi	Methanopyrus kandleri AV19	3
MJAN243232 ncbi	Methanocaldococcus jannaschii DSM 2661	4
MFLA265072 ncbi	Methylobacillus flagellatus KT	4
MBUR259564 ncbi	Methanococcoides burtonii DSM 6242	4
MBAR269797 ncbi	Methanosarcina barkeri Fusaro	4
MAQU351348 ncbi	Marinobacter aquaeolei VT8	4
MAEO419665 ncbi	Methanococcus aeolicus Nankai-3	4
MACE188937 ncbi	Methanosarcina acetivorans C2A	3
LSPH444177 ncbi	Lysinibacillus sphaericus C3-41	3
LINT363253 ncbi	Lawsonia intracellularis PHE/MN1-00	4
LCHO395495 ncbi	Leptothrix cholodnii SP-6	4
LBIF456481 ncbi	Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)	3
LBIF355278 ncbi	Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)	3
KPNE272620 ncbi	Klebsiella pneumoniae pneumoniae MGH 78578	4
JSP375286 ncbi	Janthinobacterium sp. Marseille	4
ILOI283942 ncbi	Idiomarina loihiensis L2TR	4
IHOS453591 ncbi	Ignicoccus hospitalis KIN4/I	4
HMOD498761 ncbi	Heliobacterium modesticaldum Ice1	4
HHEP235279 ncbi	Helicobacter hepaticus ATCC 51449	4
HCHE349521 ncbi	Hahella chejuensis KCTC 2396	4
HBUT415426 ncbi	Hyperthermus butylicus DSM 5456	4
HARS204773 ncbi	Herminiimonas arsenicoxydans	4
GURA351605 ncbi	Geobacter uraniireducens Rf4	3
GTHE420246 ncbi	Geobacillus thermodenitrificans NG80-2	4
GSUL243231 ncbi	Geobacter sulfurreducens PCA	4
GMET269799 ncbi	Geobacter metallireducens GS-15	3
GKAU235909 ncbi	Geobacillus kaustophilus HTA426	4
GBET391165 ncbi	Granulibacter bethesdensis CGDNIH1	3
FTUL458234 ncbi	Francisella tularensis holarctica FTNF002-00	4
FTUL418136 ncbi	Francisella tularensis tularensis WY96-3418	4
FTUL401614 ncbi	Francisella novicida U112	4
FTUL393115 ncbi	Francisella tularensis tularensis FSC198	4
FTUL393011 ncbi	Francisella tularensis holarctica OSU18	4
FTUL351581	Francisella tularensis holarctica FSC200	4
FRANT ncbi	Francisella tularensis tularensis SCHU S4	4
FPHI484022 ncbi	Francisella philomiragia philomiragia ATCC 25017	4
FNOD381764 ncbi	Fervidobacterium nodosum Rt17-B1	4
FJOH376686 ncbi	Flavobacterium johnsoniae UW101	3
ESP42895	Enterobacter sp.	3
ELIT314225 ncbi	Erythrobacter litoralis HTCC2594	4
EFER585054 ncbi	Escherichia fergusonii ATCC 35469	4
ECOO157 ncbi	Escherichia coli O157:H7 EDL933	4
ECOL83334	Escherichia coli O157:H7	4
ECOL585397 ncbi	Escherichia coli ED1a	4
ECOL585057 ncbi	Escherichia coli IAI39	4
ECOL585056 ncbi	Escherichia coli UMN026	4
ECOL585055 ncbi	Escherichia coli 55989	4
ECOL585035 ncbi	Escherichia coli S88	4
ECOL585034 ncbi	Escherichia coli IAI1	4
ECOL481805 ncbi	Escherichia coli ATCC 8739	4
ECOL469008 ncbi	Escherichia coli BL21(DE3)	4
ECOL439855 ncbi	Escherichia coli SMS-3-5	4
ECOL413997 ncbi	Escherichia coli B str. REL606	4
ECOL409438 ncbi	Escherichia coli SE11	4
ECOL405955 ncbi	Escherichia coli APEC O1	4
ECOL364106 ncbi	Escherichia coli UTI89	4
ECOL362663 ncbi	Escherichia coli 536	4
ECOL331111 ncbi	Escherichia coli E24377A	4
ECOL316407 ncbi	Escherichia coli K-12 substr. W3110	4
ECOL199310 ncbi	Escherichia coli CFT073	4
ECAR218491 ncbi	Pectobacterium atrosepticum SCRI1043	3
DVUL882 ncbi	Desulfovibrio vulgaris Hildenborough	4
DSP255470 ncbi	Dehalococcoides sp. CBDB1	4
DSP216389 ncbi	Dehalococcoides sp. BAV1	4
DSHI398580 ncbi	Dinoroseobacter shibae DFL 12	4
DRED349161 ncbi	Desulfotomaculum reducens MI-1	4
DPSY177439 ncbi	Desulfotalea psychrophila LSv54	4
DHAF138119 ncbi	Desulfitobacterium hafniense Y51	4
DETH243164 ncbi	Dehalococcoides ethenogenes 195	4
DDES207559 ncbi	Desulfovibrio desulfuricans desulfuricans G20	4
DARO159087 ncbi	Dechloromonas aromatica RCB	4
CVIO243365 ncbi	Chromobacterium violaceum ATCC 12472	4
CVES412965 ncbi	Candidatus Vesicomyosocius okutanii HA	4
CTET212717 ncbi	Clostridium tetani E88	4
CTEP194439 ncbi	Chlorobium tepidum TLS	3
CSAL290398 ncbi	Chromohalobacter salexigens DSM 3043	4
CRUT413404 ncbi	Candidatus Ruthia magnifica Cm (Calyptogena magnifica)	4
CPSY167879 ncbi	Colwellia psychrerythraea 34H	4
CPHY357809 ncbi	Clostridium phytofermentans ISDg	4
CNOV386415 ncbi	Clostridium novyi NT	4
CMAQ397948 ncbi	Caldivirga maquilingensis IC-167	4
CKOR374847 ncbi	Candidatus Korarchaeum cryptofilum OPF8	4
CKLU431943 ncbi	Clostridium kluyveri DSM 555	4
CJAP155077	Cellvibrio japonicus	4
CHYD246194 ncbi	Carboxydothermus hydrogenoformans Z-2901	4
CHUT269798 ncbi	Cytophaga hutchinsonii ATCC 33406	3
CHOM360107 ncbi	Campylobacter hominis ATCC BAA-381	4
CDIF272563 ncbi	Clostridium difficile 630	4
CDES477974 ncbi	Candidatus Desulforudis audaxviator MP104C	4
CCON360104 ncbi	Campylobacter concisus 13826	4
CCHL340177 ncbi	Chlorobium chlorochromatii CaD3	4
CBOT536232 ncbi	Clostridium botulinum A2 str. Kyoto	4
CBOT515621 ncbi	Clostridium botulinum Ba4 str. 657	4
CBOT508765 ncbi	Clostridium botulinum B str. Eklund 17B	4
CBOT498213 ncbi	Clostridium botulinum B1 str. Okra	4
CBOT441772 ncbi	Clostridium botulinum F str. Langeland	4
CBOT441771 ncbi	Clostridium botulinum A str. Hall	4
CBOT441770 ncbi	Clostridium botulinum A str. ATCC 19397	4
CBOT36826	Clostridium botulinum A	4
CBEI290402 ncbi	Clostridium beijerinckii NCIMB 8052	4
CACE272562 ncbi	Clostridium acetobutylicum ATCC 824	4
BWEI315730 ncbi	Bacillus weihenstephanensis KBAB4	3
BVIE269482 ncbi	Burkholderia vietnamiensis G4	4
BTHU412694 ncbi	Bacillus thuringiensis Al Hakam	4
BTHU281309 ncbi	Bacillus thuringiensis serovar konkukian str. 97-27	4
BTHE226186 ncbi	Bacteroides thetaiotaomicron VPI-5482	3
BTHA271848 ncbi	Burkholderia thailandensis E264	4
BSUI470137 ncbi	Brucella suis ATCC 23445	3
BSUI204722 ncbi	Brucella suis 1330	3
BSP376	Bradyrhizobium sp.	4
BSP36773	Burkholderia sp.	4
BPSE320373 ncbi	Burkholderia pseudomallei 668	4
BPSE320372 ncbi	Burkholderia pseudomallei 1710b	4
BPSE272560 ncbi	Burkholderia pseudomallei K96243	4
BPET94624	Bordetella petrii	4
BPAR257311 ncbi	Bordetella parapertussis 12822	4
BOVI236	Brucella ovis	3
BMEL359391 ncbi	Brucella melitensis biovar Abortus 2308	3
BMEL224914 ncbi	Brucella melitensis bv. 1 str. 16M	3
BMAL320389 ncbi	Burkholderia mallei NCTC 10247	4
BMAL320388 ncbi	Burkholderia mallei SAVP1	4
BMAL243160 ncbi	Burkholderia mallei ATCC 23344	4
BJAP224911 ncbi	Bradyrhizobium japonicum USDA 110	3
BHAL272558 ncbi	Bacillus halodurans C-125	4
BFRA295405 ncbi	Bacteroides fragilis YCH46	3
BFRA272559 ncbi	Bacteroides fragilis NCTC 9343	3
BCER572264 ncbi	Bacillus cereus 03BB102	4
BCER405917	Bacillus cereus W	4
BCER315749 ncbi	Bacillus cytotoxicus NVH 391-98	4
BCER288681 ncbi	Bacillus cereus E33L	4
BCER226900 ncbi	Bacillus cereus ATCC 14579	4
BCEN331272 ncbi	Burkholderia cenocepacia HI2424	4
BCEN331271 ncbi	Burkholderia cenocepacia AU 1054	4
BCAN483179 ncbi	Brucella canis ATCC 23365	3
BBRO257310 ncbi	Bordetella bronchiseptica RB50	4
BBAC264462 ncbi	Bdellovibrio bacteriovorus HD100	4
BANT592021 ncbi	Bacillus anthracis A0248	4
BANT568206 ncbi	Bacillus anthracis CDC 684	4
BANT261594 ncbi	Bacillus anthracis Ames Ancestor	4
BANT260799 ncbi	Bacillus anthracis Sterne	4
BAMB398577 ncbi	Burkholderia ambifaria MC40-6	4
BAMB339670 ncbi	Burkholderia ambifaria AMMD	4
BABO262698 ncbi	Brucella abortus bv. 1 str. 9-941	3
ASP76114 ncbi	Aromatoleum aromaticum EbN1	4
ASP62977 ncbi	Acinetobacter sp. ADP1	4
ASP62928 ncbi	Azoarcus sp. BH72	4
ASP232721 ncbi	Acidovorax sp. JS42	4
ASAL382245 ncbi	Aeromonas salmonicida salmonicida A449	4
AMET293826 ncbi	Alkaliphilus metalliredigens QYMF	4
AHYD196024	Aeromonas hydrophila dhakensis	4
AFUL224325 ncbi	Archaeoglobus fulgidus DSM 4304	3
AEHR187272 ncbi	Alkalilimnicola ehrlichii MLHE-1	4
ADEH290397 ncbi	Anaeromyxobacter dehalogenans 2CP-C	3
ACRY349163 ncbi	Acidiphilium cryptum JF-5	3
ABUT367737 ncbi	Arcobacter butzleri RM4018	4
ABOR393595 ncbi	Alcanivorax borkumensis SK2	4
ABAU360910 ncbi	Bordetella avium 197N	4
ABAC204669 ncbi	Candidatus Koribacter versatilis Ellin345	4
AAVE397945 ncbi	Acidovorax citrulli AAC00-1	4
AAEO224324 ncbi	Aquifex aeolicus VF5	4

Names of the homologs of the genes in the group in each of these orgs

	EG11169	EG11168	EG10357	EG10356
ZMOB264203	ZMO1307	ZMO1307	ZMO1307	ZMO1307
YPSE349747	YPSIP31758_3271		YPSIP31758_3271	YPSIP31758_3271
YPSE273123	YPTB0796		YPTB0796	YPTB0796
YPES386656	YPDSF_3026		YPDSF_3026	YPDSF_3026
YPES377628	YPN_0758		YPN_0758	YPN_0758
YPES360102	YPA_2809		YPA_2809	YPA_2809
YPES349746	YPANGOLA_A0933		YPANGOLA_A0933	YPANGOLA_A0933
YPES214092	YPO3335		YPO3335	YPO3335
YPES187410	Y0854		Y0854	Y0854
YENT393305	YE4036		YE4036	YE4036
XORY360094	XOOORF_2279	XOOORF_2279	XOOORF_2279	XOOORF_2279
XORY342109	XOO2216	XOO2216	XOO2216	XOO2216
XORY291331	XOO2336	XOO2336	XOO2336	XOO2336
XFAS405440	XFASM12_1109	XFASM12_1109	XFASM12_1109	XFASM12_1109
XFAS183190	PD_0947	PD_0947	PD_0947	PD_0947
XFAS160492	XF1855	XF1855	XF1855	XF1855
XCAM487884	XCC-B100_2882	XCC-B100_2882	XCC-B100_2882	XCC-B100_2882
XCAM316273	XCAORF_1688	XCAORF_1688	XCAORF_1688	XCAORF_1688
XCAM314565	XC_2822	XC_2822	XC_2822	XC_2822
XCAM190485	XCC1416	XCC1416	XCC1416	XCC1416
XAXO190486	XAC1460	XAC1460	XAC1460	XAC1460
XAUT78245	XAUT_1360	XAUT_1360	XAUT_1360	XAUT_1360
WSUC273121	WS1529	WS1530	WS1767	WS1767
VVUL216895	VV1_2266	VV1_2266	VV1_2266	VV1_2266
VVUL196600	VV2079	VV2079	VV2079	VV2079
VPAR223926	VP1873	VP1873	VP1873	VP1873
VFIS312309	VF1180	VF1180	VF1180	VF1180
VEIS391735	VEIS_2510	VEIS_2511	VEIS_3214	VEIS_3214
VCHO345073	VC0395_A0922	VC0395_A0922	VC0395_A0922	VC0395_A0922
VCHO	VC1304	VC1304	VC1304	VC1304
UMET351160	RCIX2056	RCIX2057	RCIX2056	RCIX2056
TTUR377629	TERTU_3017	TERTU_3017	TERTU_3017	TERTU_3017
TTEN273068	TTE0076	TTE0075	TTE0076	TTE0076
TSP28240	TRQ2_0396	TRQ2_0397	TRQ2_0396	TRQ2_0396
TSP1755	TETH514_1778	TETH514_1779	TETH514_1778	TETH514_1778
TPSE340099	TETH39_2170	TETH39_2171	TETH39_2170	TETH39_2170
TPET390874	TPET_0380	TPET_0381	TPET_0380	TPET_0380
TMAR243274	TM_0541	TM_0540	TM_0541	TM_0541
TLET416591	TLET_0917	TLET_0918	TLET_0917
TKOD69014	TK1964	TK1965	TK1964	TK1965
TDEN243275	TDE_1521	TDE_1520	TDE_1521	TDE_1521
SWOL335541	SWOL_1628	SWOL_1629	SWOL_1628
STYP99287	STM3354	STM3355	STM1468	STM1468
STRO369723	STROP_4245		STROP_4245	STROP_4245
STHE292459	STH2642	STH2641	STH2642	STH2642
SSP94122	SHEWANA3_2302	SHEWANA3_2302	SHEWANA3_2302	SHEWANA3_2302
SSP387093	SUN_0574	SUN_0573	SUN_0574	SUN_0574
SSON300269	SSO_3199	SSO_3198	SSO_1548	SSO_1548
SSED425104	SSED_2358	SSED_2358	SSED_2358	SSED_2358
SPRO399741	SPRO_4022		SPRO_4022	SPRO_4022
SPEA398579	SPEA_2038	SPEA_2038	SPEA_2038	SPEA_2038
SONE211586	SO_2222	SO_2222	SO_2222	SO_2222
SLOI323850	SHEW_1904	SHEW_1904	SHEW_1904	SHEW_1904
SHIGELLA	TTDB	TTDA	FUMB	FUMB
SHAL458817	SHAL_2256	SHAL_2256	SHAL_2256	SHAL_2256
SFUM335543	SFUM_2336		SFUM_2336	SFUM_2336
SFLE373384	SFV_3102	SFV_3101	SFV_4108	SFV_4108
SFLE198214	AAN44579.1	AAN44578.1	AAN45526.1	AAN45526.1
SERY405948	SACE_1784		SACE_1784	SACE_1784
SENT454169	SEHA_C3652	SEHA_C3653	SEHA_C4646	SEHA_C4646
SENT321314	SCH_3292	SCH_3293	SCH_4179	SCH_4179
SENT295319	SPA3221	SPA3222	SPA4118	SPA4118
SENT220341	STY3534	STY3535	STY4499	STY4499
SENT209261	T3269	T3270	T1336	T1336
SDYS300267	SDY_4231		SDY_1828	SDY_1828
SDEN318161	SDEN_1912	SDEN_1912	SDEN_1912	SDEN_1912
SDEG203122	SDE_0888	SDE_0888	SDE_0888	SDE_0888
SCO	SCO5044		SCO5044	SCO5044
SBOY300268	SBO_2920	SBO_2919	SBO_4326	SBO_4326
SBAL402882	SHEW185_1944	SHEW185_1944	SHEW185_1944	SHEW185_1944
SBAL399599	SBAL195_1951	SBAL195_1951	SBAL195_1951	SBAL195_1951
SAVE227882	SAV3218		SAV3218	SAV3218
SARE391037	SARE_4675		SARE_4675	SARE_4675
SALA317655	SALA_0374	SALA_0374	SALA_0374	SALA_0374
SACI56780	SYN_00158	SYN_00159	SYN_00158	SYN_00158
RXYL266117	RXYL_2749	RXYL_2748	RXYL_2749	RXYL_2749
RSP101510	RHA1_RO08823	RHA1_RO08824	RHA1_RO05899	RHA1_RO05899
RSOL267608	RSC1955	RSC1955	RSC1955	RSC1955
RRUB269796	RRU_A2206	RRU_A2206	RRU_A2206	RRU_A2206
RPOM246200	SPO_1498	SPO_1498	SPO_1498	SPO_1498
RPAL316058	RPB_3762		RPB_3762	RPB_3762
RPAL316057	RPD_1708	RPD_1708	RPD_1708	RPD_1708
RPAL316056	RPC_1533	RPC_1533	RPC_1533	RPC_1533
RPAL316055	RPE_1571	RPE_1571	RPE_1571	RPE_1571
RPAL258594	RPA3876	RPA3876	RPA3876	RPA3876
RMET266264	RMET_2273	RMET_5472	RMET_2273	RMET_2273
RLEG216596	RL2703		RL2703	RL2703
RFER338969	RFER_2583	RFER_2583	RFER_2583	RFER_2583
REUT381666	H16_A2528	H16_A2528	H16_A2528	H16_A2528
REUT264198	REUT_B5650	REUT_B5651	REUT_A2232	REUT_A2232
RETL347834	RHE_CH02385		RHE_CH02385	RHE_CH02385
RALB246199	GRAORF_0408	GRAORF_1942	GRAORF_0408	GRAORF_0408
PTHE370438	PTH_1357	PTH_1356	PTH_1357	PTH_1357
PSYR223283	PSPTO_4339	PSPTO_4339	PSPTO_4339	PSPTO_4339
PSYR205918	PSYR_4031	PSYR_4031	PSYR_4031	PSYR_4031
PSTU379731	PST_1147	PST_1147	PST_1147	PST_1147
PSP312153	PNUC_1139	PNUC_1139	PNUC_1139	PNUC_1139
PSP296591	BPRO_2046	BPRO_2046	BPRO_2046	BPRO_2046
PRUM264731	GFRORF0119		GFRORF0119	GFRORF0119
PPUT76869	PPUTGB1_4454	PPUTGB1_4454	PPUTGB1_4454	PPUTGB1_4454
PPUT351746	PPUT_0936	PPUT_0936	PPUT_0936	PPUT_0936
PPUT160488	PP_0897	PP_0897	PP_0897	PP_0897
PPRO298386	PBPRA2409	PBPRA2409	PBPRA2409	PBPRA2409
PNAP365044	PNAP_2883	PNAP_2883	PNAP_2883	PNAP_2883
PMOB403833	PMOB_0950	PMOB_0951	PMOB_0950	PMOB_0950
PMEN399739	PMEN_3265	PMEN_3265	PMEN_3265	PMEN_3265
PLUT319225	PLUT_1269	PLUT_1269	PLUT_1269	PLUT_1269
PISL384616	PISL_0951	PISL_0950	PISL_0951	PISL_0951
PINT246198	PIN_0537	PIN_0536	PIN_A2025	PIN_A2025
PING357804	PING_1977	PING_1977	PING_1977	PING_1977
PHAL326442	PSHAA1166	PSHAA1166	PSHAA1166	PSHAA1166
PGIN242619	PG_1417		PG_1417	PG_1417
PFLU220664	PFL_4801	PFL_4801	PFL_4801	PFL_4801
PFLU216595	PFLU4952	PFLU4952	PFLU4952	PFLU4952
PFLU205922	PFL_4452	PFL_4452	PFL_4452	PFL_4452
PENT384676	PSEEN1145	PSEEN1145	PSEEN1145	PSEEN1145
PDIS435591	BDI_2765		BDI_2765	BDI_2765
PATL342610	PATL_1628	PATL_1628	PATL_1628	PATL_1628
PARS340102	PARS_0828	PARS_0827	PARS_0828	PARS_0828
PAER208964	PA4333	PA4333	PA4333	PA4333
PAER208963	PA14_56300	PA14_56300	PA14_56300	PA14_56300
PAER178306	PAE2131	PAE2132	PAE2131	PAE2131
OCAR504832	OCAR_5410	OCAR_5410	OCAR_5410	OCAR_5410
NSP387092	NIS_0837	NIS_0836	NIS_0837	NIS_0837
NSP35761	NOCA_1061		NOCA_1061	NOCA_1061
NMEN374833	NMCC_1519	NMCC_1519	NMCC_1519	NMCC_1519
NMEN272831	NMC1534	NMC1534	NMC1534	NMC1534
NMEN122587	NMA1812	NMA1812	NMA1812	NMA1812
NMEN122586	NMB_1613	NMB_1613	NMB_1613	NMB_1613
NFAR247156	NFA32060		NFA32060	NFA32060
NARO279238	SARO_0188	SARO_0188	SARO_0188	SARO_0188
MTHE264732	MOTH_2282	MOTH_2283	MOTH_2282	MOTH_2282
MSTA339860	MSP_0791	MSP_0338	MSP_0791
MSP400668	MMWYL1_2334	MMWYL1_2334	MMWYL1_2334	MMWYL1_2334
MSP266779	MESO_0056	MESO_0056	MESO_0056	MESO_0056
MSME246196	MSMEG_2985		MSMEG_2985	MSMEG_2985
MPET420662	MPE_A1382	MPE_A1382	MPE_A1382	MPE_A1382
MMAZ192952	MM3067	MM3066	MM3067	MM3067
MMAG342108	AMB3178	AMB3179	AMB1331	AMB1331
MLOT266835	MLR6099	MLR6099	MLR6099	MLR6099
MKAN190192	MK0086	MK0085	MK0086
MJAN243232	MJ_0617	MJ_1294	MJ_0617	MJ_0617
MFLA265072	MFLA_1918	MFLA_1918	MFLA_1918	MFLA_1918
MBUR259564	MBUR_0251	MBUR_0250	MBUR_0251	MBUR_0251
MBAR269797	MBAR_A2417	MBAR_A2418	MBAR_A2417	MBAR_A2418
MAQU351348	MAQU_2035	MAQU_2035	MAQU_2035	MAQU_2035
MAEO419665	MAEO_0918	MAEO_0629	MAEO_0918	MAEO_0918
MACE188937	MA2498	MA2497	MA2498
LSPH444177	BSPH_0300	BSPH_0300		BSPH_0300
LINT363253	LI0293	LI0294	LI0293	LI0293
LCHO395495	LCHO_3065	LCHO_3065	LCHO_3065	LCHO_3065
LBIF456481	LEPBI_I3137		LEPBI_I3137	LEPBI_I3137
LBIF355278	LBF_3027		LBF_3027	LBF_3027
KPNE272620	GKPORF_B2974	GKPORF_B2975	GKPORF_B0543	GKPORF_B0543
JSP375286	MMA_0880	MMA_0880	MMA_0880	MMA_0880
ILOI283942	IL1705	IL1705	IL1705	IL1705
IHOS453591	IGNI_0678	IGNI_0678	IGNI_0678	IGNI_0678
HMOD498761	HM1_0464	HM1_0463	HM1_0464	HM1_0464
HHEP235279	HH_1793	HH_1792	HH_1793	HH_1793
HCHE349521	HCH_04987	HCH_04987	HCH_04987	HCH_04987
HBUT415426	HBUT_0158	HBUT_0159	HBUT_0158	HBUT_0158
HARS204773	HEAR3332	HEAR3330	HEAR0919	HEAR0919
GURA351605	GURA_1651		GURA_1651	GURA_1651
GTHE420246	GTNG_0398	GTNG_0398	GTNG_0398	GTNG_0398
GSUL243231	GSU_0994	GSU_0994	GSU_0994	GSU_0994
GMET269799	GMET_2570		GMET_2570	GMET_2570
GKAU235909	GK0426	GK0426	GK0426	GK0426
GBET391165	GBCGDNIH1_1807		GBCGDNIH1_1807	GBCGDNIH1_1807
FTUL458234	FTA_0555	FTA_0555	FTA_0555	FTA_0555
FTUL418136	FTW_0335	FTW_0335	FTW_0335	FTW_0335
FTUL401614	FTN_0337	FTN_0337	FTN_0337	FTN_0337
FTUL393115	FTF1600C	FTF1600C	FTF1600C	FTF1600C
FTUL393011	FTH_0524	FTH_0524	FTH_0524	FTH_0524
FTUL351581	FTL_0525	FTL_0525	FTL_0525	FTL_0525
FRANT	FUMA	FUMA	FUMA	FUMA
FPHI484022	FPHI_0489	FPHI_0489	FPHI_0489	FPHI_0489
FNOD381764	FNOD_0520	FNOD_0521	FNOD_0520	FNOD_0520
FJOH376686	FJOH_0881		FJOH_0881	FJOH_0881
ESP42895	ENT638_1831		ENT638_1831	ENT638_1831
ELIT314225	ELI_12905	ELI_12905	ELI_12905	ELI_12905
EFER585054	EFER_3208	EFER_3209	EFER_4176	EFER_4176
ECOO157	TTDB	TTDA	Z0887	Z0887
ECOL83334	ECS3945	ECS3944	ECS2318	ECS2318
ECOL585397	ECED1_3731	ECED1_3730	ECED1_1811	ECED1_1811
ECOL585057	ECIAI39_3558	ECIAI39_3557	ECIAI39_4546	ECIAI39_4546
ECOL585056	ECUMN_3545	ECUMN_3544	ECUMN_1901	ECUMN_1901
ECOL585055	EC55989_3477	EC55989_3476	EC55989_4613	EC55989_4613
ECOL585035	ECS88_3460	ECS88_3459	ECS88_4623	ECS88_4623
ECOL585034	ECIAI1_3210	ECIAI1_3209	ECIAI1_4352	ECIAI1_4352
ECOL481805	ECOLC_0637	ECOLC_0638	ECOLC_3905	ECOLC_3905
ECOL469008	ECBD_0679	ECBD_0680	ECBD_2034	ECBD_2034
ECOL439855	ECSMS35_3355	ECSMS35_3354	ECSMS35_1587	ECSMS35_1587
ECOL413997	ECB_02932	ECB_02931	ECB_03993	ECB_03993
ECOL409438	ECSE_3343	ECSE_3342	ECSE_4420	ECSE_4420
ECOL405955	APECO1_3352	APECO1_3353	APECO1_695	APECO1_695
ECOL364106	UTI89_C3498	UTI89_C3497	UTI89_C4715	UTI89_C4715
ECOL362663	ECP_3152	ECP_3151	ECP_4364	ECP_4364
ECOL331111	ECE24377A_3526	ECE24377A_3525	ECE24377A_4676	ECE24377A_4676
ECOL316407	ECK3052:JW3034:B3062	ECK3051:JW3033:B3061	ECK4115:JW4083:B4122	ECK4115:JW4083:B4122
ECOL199310	C3813	C3812	C5127	C5127
ECAR218491	ECA0904		ECA0904	ECA0904
DVUL882	DVU_3265	DVU_3264	DVU_3265	DVU_3265
DSP255470	CBDBA413	CBDBA411	CBDBA413	CBDBA413
DSP216389	DEHABAV1_0431	DEHABAV1_0430	DEHABAV1_0431	DEHABAV1_0431
DSHI398580	DSHI_1426	DSHI_1426	DSHI_1426	DSHI_1426
DRED349161	DRED_1871	DRED_1872	DRED_1871	DRED_1871
DPSY177439	DP2952	DP2952	DP2952	DP2952
DHAF138119	DSY3229	DSY3230	DSY3229	DSY3229
DETH243164	DET_0454	DET_0453	DET_0454	DET_0454
DDES207559	DDE_1254	DDE_1255	DDE_1254	DDE_1254
DARO159087	DARO_1627	DARO_1627	DARO_1627	DARO_1627
CVIO243365	CV_3476	CV_3476	CV_3476	CV_3476
CVES412965	COSY_0719	COSY_0719	COSY_0719	COSY_0719
CTET212717	CTC_02561	CTC_02562	CTC_02561	CTC_02561
CTEP194439	CT_0833	CT_0833		CT_0833
CSAL290398	CSAL_1834	CSAL_1834	CSAL_1834	CSAL_1834
CRUT413404	RMAG_0793	RMAG_0793	RMAG_0793	RMAG_0793
CPSY167879	CPS_3613	CPS_3613	CPS_3613	CPS_3613
CPHY357809	CPHY_0008	CPHY_0007	CPHY_0008	CPHY_0008
CNOV386415	NT01CX_2053	NT01CX_2052	NT01CX_2053	NT01CX_2053
CMAQ397948	CMAQ_1616	CMAQ_1579	CMAQ_1616	CMAQ_1616
CKOR374847	KCR_0094	KCR_0093	KCR_0094	KCR_0093
CKLU431943	CKL_0304	CKL_0303	CKL_0304	CKL_0304
CJAP155077	CJA_2642	CJA_2642	CJA_2642	CJA_2642
CHYD246194	CHY_0062	CHY_1375	CHY_0062	CHY_0062
CHUT269798	CHU_3285		CHU_3285	CHU_3285
CHOM360107	CHAB381_0024	CHAB381_0023	CHAB381_0024	CHAB381_0024
CDIF272563	CD1004	CD1003	CD1004	CD1004
CDES477974	DAUD_1253	DAUD_1254	DAUD_1253	DAUD_1253
CCON360104	CCC13826_1007	CCC13826_1006	CCC13826_1700	CCC13826_1700
CCHL340177	CAG_0860	CAG_0860	CAG_0860	CAG_0860
CBOT536232	CLM_3908	CLM_3909	CLM_3908	CLM_3908
CBOT515621	CLJ_B3749	CLJ_B3750	CLJ_B3749	CLJ_B3749
CBOT508765	CLL_A0279	CLL_A0278	CLL_A0279	CLL_A0279
CBOT498213	CLD_1064	CLD_1063	CLD_1064	CLD_1064
CBOT441772	CLI_3623	CLI_3624	CLI_3623	CLI_3623
CBOT441771	CLC_3385	CLC_3386	CLC_3385	CLC_3385
CBOT441770	CLB_3497	CLB_3498	CLB_3497	CLB_3497
CBOT36826	CBO3441	CBO3442	CBO3441	CBO3441
CBEI290402	CBEI_0190	CBEI_0189	CBEI_0190	CBEI_0190
CACE272562	CAC3090	CAC3091	CAC3090	CAC3090
BWEI315730	BCERKBAB4_0403	BCERKBAB4_0403		BCERKBAB4_0403
BVIE269482	BCEP1808_2280	BCEP1808_2280	BCEP1808_2280	BCEP1808_2280
BTHU412694	BALH_0422	BALH_0422	BALH_0422	BALH_0422
BTHU281309	BT9727_0401	BT9727_0401	BT9727_0401	BT9727_0401
BTHE226186	BT_2256		BT_2256	BT_2256
BTHA271848	BTH_II2020	BTH_II2020	BTH_II2020	BTH_II2020
BSUI470137	BSUIS_A1001		BSUIS_A1001	BSUIS_A1001
BSUI204722	BR_0961		BR_0961	BR_0961
BSP376	BRADO5016	BRADO5016	BRADO5016	BRADO5016
BSP36773	BCEP18194_A5523	BCEP18194_A5523	BCEP18194_A5523	BCEP18194_A5523
BPSE320373	BURPS668_A0624	BURPS668_A0624	BURPS668_A0624	BURPS668_A0624
BPSE320372	BURPS1710B_B2269	BURPS1710B_B2269	BURPS1710B_B2269	BURPS1710B_B2269
BPSE272560	BPSS0372	BPSS0372	BPSS0372	BPSS0372
BPET94624	BPET0403	BPET0402	BPET0784	BPET3813
BPAR257311	BPP0352	BPP0353	BPP3646	BPP3646
BOVI236	GBOORF0983		GBOORF0983	GBOORF0983
BMEL359391	BAB1_0977		BAB1_0977	BAB1_0977
BMEL224914	BMEI1016		BMEI1016	BMEI1016
BMAL320389	BMA10247_A2058	BMA10247_A2058	BMA10247_A2058	BMA10247_A2058
BMAL320388	BMASAVP1_0793	BMASAVP1_0793	BMASAVP1_0793	BMASAVP1_0793
BMAL243160	BMA_A1797	BMA_A1797	BMA_A1797	BMA_A1797
BJAP224911	BLL5796		BLL5796	BLL5796
BHAL272558	BH0894	BH0894	BH0894	BH0894
BFRA295405	BF0676		BF0676	BF0676
BFRA272559	BF0601		BF0601	BF0601
BCER572264	BCA_0504	BCA_0504	BCA_0504	BCA_0504
BCER405917	BCE_0539	BCE_0539	BCE_0539	BCE_0539
BCER315749	BCER98_0409	BCER98_0409	BCER98_0409	BCER98_0409
BCER288681	BCE33L0397	BCE33L0397	BCE33L0397	BCE33L0397
BCER226900	BC_0466	BC_0466	BC_0466	BC_0466
BCEN331272	BCEN2424_2194	BCEN2424_2194	BCEN2424_2194	BCEN2424_2194
BCEN331271	BCEN_5883	BCEN_5883	BCEN_5883	BCEN_5883
BCAN483179	BCAN_A0973		BCAN_A0973	BCAN_A0973
BBRO257310	BB0355	BB0356	BB4081	BB4081
BBAC264462	BD2151	BD2151	BD2151	BD2151
BANT592021	BAA_0488	BAA_0488	BAA_0488	BAA_0488
BANT568206	BAMEG_0494	BAMEG_0494	BAMEG_0494	BAMEG_0494
BANT261594	GBAA0423	GBAA0423	GBAA0423	GBAA0423
BANT260799	BAS0410	BAS0410	BAS0410	BAS0410
BAMB398577	BAMMC406_2112	BAMMC406_2112	BAMMC406_2112	BAMMC406_2112
BAMB339670	BAMB_2233	BAMB_2233	BAMB_2233	BAMB_2233
BABO262698	BRUAB1_0967		BRUAB1_0967	BRUAB1_0967
ASP76114	EBA173	EBA173	EBA173	EBA173
ASP62977	ACIAD0538	ACIAD0538	ACIAD0538	ACIAD0538
ASP62928	AZO2415	AZO2415	AZO2415	AZO2415
ASP232721	AJS_1056	AJS_1056	AJS_1056	AJS_1056
ASAL382245	ASA_2292	ASA_2292	ASA_2292	ASA_2292
AMET293826	AMET_3412	AMET_3413	AMET_3412	AMET_3412
AHYD196024	AHA_2434	AHA_2434	AHA_2434	AHA_2434
AFUL224325	AF_1098	AF_1099	AF_1098
AEHR187272	MLG_2412	MLG_2412	MLG_2412	MLG_2412
ADEH290397	ADEH_0264		ADEH_2068	ADEH_2068
ACRY349163	ACRY_1337		ACRY_1337	ACRY_1337
ABUT367737	ABU_1928	ABU_1928	ABU_1928	ABU_1928
ABOR393595	ABO_1540	ABO_1540	ABO_1540	ABO_1540
ABAU360910	BAV0711	BAV0711	BAV0711	BAV0711
ABAC204669	ACID345_2742	ACID345_2742	ACID345_2742	ACID345_2742
AAVE397945	AAVE_1489	AAVE_1489	AAVE_1489	AAVE_1489
AAEO224324	AQ_1679	AQ_1780	AQ_1679	AQ_1679

Organism features enriched in list (features available for 283 out of the 300 orgs in the list)

Feature	Pvalue	Num occurrences in list	Total num occurrences
Arrangment:Chains	0.0014157	32	92
Arrangment:Clusters	0.0001680	1	17
Arrangment:Pairs	0.0042359	66	112
Disease:Gastroenteritis	0.0068219	11	13
Endospores:No	2.503e-8	71	211
Endospores:Yes	0.0000202	40	53
GC_Content_Range4:0-40	1.834e-15	58	213
GC_Content_Range4:40-60	1.728e-8	141	224
GC_Content_Range4:60-100	0.0025553	84	145
GC_Content_Range7:0-30	0.0032304	14	47
GC_Content_Range7:30-40	6.376e-12	44	166
GC_Content_Range7:50-60	3.034e-9	79	107
GC_Content_Range7:60-70	0.0030539	78	134
Genome_Size_Range5:0-2	6.420e-20	28	155
Genome_Size_Range5:2-4	0.0000519	74	197
Genome_Size_Range5:4-6	5.415e-25	146	184
Genome_Size_Range5:6-10	0.0001116	35	47
Genome_Size_Range9:0-1	2.491e-7	1	27
Genome_Size_Range9:1-2	4.498e-13	27	128
Genome_Size_Range9:2-3	0.0000133	38	120
Genome_Size_Range9:4-5	6.007e-9	72	96
Genome_Size_Range9:5-6	7.152e-14	74	88
Genome_Size_Range9:6-8	0.0002240	29	38
Gram_Stain:Gram_Neg	1.922e-11	201	333
Gram_Stain:Gram_Pos	1.509e-7	46	150
Habitat:Host-associated	1.215e-8	68	206
Habitat:Multiple	0.0001435	106	178
Motility:No	9.823e-8	46	151
Motility:Yes	5.213e-15	176	267
Optimal_temp.:25-30	0.0010848	16	19
Oxygen_Req:Anaerobic	0.0000245	68	102
Pathogenic_in:Human	0.0070799	91	213
Shape:Coccus	2.797e-11	13	82
Shape:Rod	1.855e-17	218	347
Shape:Sphere	0.0004232	2	19
Shape:Spiral	0.0099915	10	34

ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 300
Effective number of orgs (counting one per cluster within 468 clusters): 230

Organism list
Homologs in each organism in the list
Features enriched in organism list

Follow (ncbi) link, when present, to find the set of organism features for each organism

Org ID	Org Name	# genes in group found in org
WPIP955	Wolbachia pipientis	0
WPIP80849	Wolbachia endosymbiont of Brugia malayi	0
UURE95667	Ureaplasma urealyticum serovar 13	0
UURE95664	Ureaplasma urealyticum serovar 10	0
UPAR505682 ncbi	Ureaplasma parvum serovar 3 str. ATCC 27815	0
TWHI218496 ncbi	Tropheryma whipplei TW08/27	0
TWHI203267 ncbi	Tropheryma whipplei Twist	0
TVOL273116 ncbi	Thermoplasma volcanium GSS1	0
TTHE300852 ncbi	Thermus thermophilus HB8	0
TTHE262724 ncbi	Thermus thermophilus HB27	0
TROS309801 ncbi	Thermomicrobium roseum DSM 5159	0
TPEN368408 ncbi	Thermofilum pendens Hrk 5	0
TPAL243276 ncbi	Treponema pallidum pallidum Nichols	0
TFUS269800 ncbi	Thermobifida fusca YX	0
TERY203124 ncbi	Trichodesmium erythraeum IMS101	0
TELO197221 ncbi	Thermosynechococcus elongatus BP-1	0
TDEN326298 ncbi	Sulfurimonas denitrificans DSM 1251	0
TDEN292415 ncbi	Thiobacillus denitrificans ATCC 25259	0
TCRU317025 ncbi	Thiomicrospira crunogena XCL-2	0
TACI273075 ncbi	Thermoplasma acidophilum DSM 1728	0
STOK273063 ncbi	Sulfolobus tokodaii 7	0
STHE322159 ncbi	Streptococcus thermophilus LMD-9	0
STHE299768 ncbi	Streptococcus thermophilus CNRZ1066	0
STHE264199 ncbi	Streptococcus thermophilus LMG 18311	0
SSUI391296 ncbi	Streptococcus suis 98HAH33	0
SSUI391295 ncbi	Streptococcus suis 05ZYH33	0
SSP84588 ncbi	Synechococcus sp. WH 8102	0
SSP64471 ncbi	Synechococcus sp. CC9311	0
SSP644076	Silicibacter sp. TrichCH4B	0
SSP321332 ncbi	Synechococcus sp. JA-2-3Ba(2-13)	0
SSP321327 ncbi	Synechococcus sp. JA-3-3Ab	0
SSP292414 ncbi	Ruegeria sp. TM1040	0
SSP1148 ncbi	Synechocystis sp. PCC 6803	0
SSP1131	Synechococcus sp. CC9605	0
SSOL273057 ncbi	Sulfolobus solfataricus P2	0
SSAP342451 ncbi	Staphylococcus saprophyticus saprophyticus ATCC 15305	0
SRUB309807 ncbi	Salinibacter ruber DSM 13855	0
SPYO370554 ncbi	Streptococcus pyogenes MGAS10750	0
SPYO370553 ncbi	Streptococcus pyogenes MGAS2096	0
SPYO370552 ncbi	Streptococcus pyogenes MGAS10270	0
SPYO370551 ncbi	Streptococcus pyogenes MGAS9429	0
SPYO319701 ncbi	Streptococcus pyogenes MGAS6180	0
SPYO293653 ncbi	Streptococcus pyogenes MGAS5005	0
SPYO286636 ncbi	Streptococcus pyogenes MGAS10394	0
SPYO198466 ncbi	Streptococcus pyogenes MGAS315	0
SPYO193567 ncbi	Streptococcus pyogenes SSI-1	0
SPYO186103 ncbi	Streptococcus pyogenes MGAS8232	0
SPYO160490 ncbi	Streptococcus pyogenes M1 GAS	0
SPNE488221 ncbi	Streptococcus pneumoniae 70585	0
SPNE487214 ncbi	Streptococcus pneumoniae Hungary19A-6	0
SPNE487213 ncbi	Streptococcus pneumoniae Taiwan19F-14	0
SPNE171101 ncbi	Streptococcus pneumoniae R6	0
SPNE170187 ncbi	Streptococcus pneumoniae G54	0
SPNE1313	Streptococcus pneumoniae	0
SMUT210007 ncbi	Streptococcus mutans UA159	0
SMEL266834 ncbi	Sinorhizobium meliloti 1021	0
SMED366394 ncbi	Sinorhizobium medicae WSM419	0
SMAR399550 ncbi	Staphylothermus marinus F1	0
SLAC55218	Ruegeria lacuscaerulensis	0
SHAE279808 ncbi	Staphylococcus haemolyticus JCSC1435	0
SGOR29390	Streptococcus gordonii Challis	0
SGLO343509 ncbi	Sodalis glossinidius morsitans	0
SEPI176280 ncbi	Staphylococcus epidermidis ATCC 12228	0
SEPI176279 ncbi	Staphylococcus epidermidis RP62A	0
SELO269084 ncbi	Synechococcus elongatus PCC 6301	0
SAUR93062 ncbi	Staphylococcus aureus aureus COL	0
SAUR93061 ncbi	Staphylococcus aureus aureus NCTC 8325	0
SAUR426430 ncbi	Staphylococcus aureus aureus Newman	0
SAUR418127 ncbi	Staphylococcus aureus aureus Mu3	0
SAUR367830	Staphylococcus aureus aureus USA300	0
SAUR359787 ncbi	Staphylococcus aureus aureus JH1	0
SAUR359786 ncbi	Staphylococcus aureus aureus JH9	0
SAUR282459 ncbi	Staphylococcus aureus aureus MSSA476	0
SAUR282458 ncbi	Staphylococcus aureus aureus MRSA252	0
SAUR273036 ncbi	Staphylococcus aureus RF122	0
SAUR196620 ncbi	Staphylococcus aureus aureus MW2	0
SAUR158879 ncbi	Staphylococcus aureus aureus N315	0
SAUR158878 ncbi	Staphylococcus aureus aureus Mu50	0
SAGA211110 ncbi	Streptococcus agalactiae NEM316	0
SAGA208435 ncbi	Streptococcus agalactiae 2603V/R	0
SAGA205921 ncbi	Streptococcus agalactiae A909	0
SACI330779 ncbi	Sulfolobus acidocaldarius DSM 639	0
RTYP257363 ncbi	Rickettsia typhi Wilmington	0
RSPH349102 ncbi	Rhodobacter sphaeroides ATCC 17025	0
RSP357808 ncbi	Roseiflexus sp. RS-1	0
RSAL288705 ncbi	Renibacterium salmoninarum ATCC 33209	0
RRIC452659 ncbi	Rickettsia rickettsii Iowa	0
RRIC392021 ncbi	Rickettsia rickettsii Sheila Smith	0
RPRO272947 ncbi	Rickettsia prowazekii Madrid E	0
RMAS416276 ncbi	Rickettsia massiliae MTU5	0
RFEL315456 ncbi	Rickettsia felis URRWXCal2	0
RDEN375451 ncbi	Roseobacter denitrificans OCh 114	0
RCON272944 ncbi	Rickettsia conorii Malish 7	0
RCAS383372 ncbi	Roseiflexus castenholzii DSM 13941	0
RCAN293613 ncbi	Rickettsia canadensis McKiel	0
RBEL391896 ncbi	Rickettsia bellii OSU 85-389	0
RBEL336407 ncbi	Rickettsia bellii RML369-C	0
RAKA293614 ncbi	Rickettsia akari Hartford	0
PTOR263820 ncbi	Picrophilus torridus DSM 9790	0
PSP56811	Psychrobacter sp.	0
PSP117	Pirellula sp.	0
PPEN278197 ncbi	Pediococcus pentosaceus ATCC 25745	0
PMUL272843 ncbi	Pasteurella multocida multocida Pm70	0
PMAR93060 ncbi	Prochlorococcus marinus MIT 9215	0
PMAR74547 ncbi	Prochlorococcus marinus MIT 9313	0
PMAR74546 ncbi	Prochlorococcus marinus MIT 9312	0
PMAR59920 ncbi	Prochlorococcus marinus NATL2A	0
PMAR167555 ncbi	Prochlorococcus marinus NATL1A	0
PMAR167546 ncbi	Prochlorococcus marinus MIT 9301	0
PMAR167542 ncbi	Prochlorococcus marinus MIT 9515	0
PMAR167540	Prochlorococcus marinus pastoris MED4ax	0
PMAR167539 ncbi	Prochlorococcus marinus marinus CCMP1375	0
PMAR146891 ncbi	Prochlorococcus marinus AS9601	0
PLUM243265 ncbi	Photorhabdus luminescens laumondii TTO1	0
PCRY335284 ncbi	Psychrobacter cryohalolentis K5	0
PCAR338963 ncbi	Pelobacter carbinolicus DSM 2380	0
PAST100379	Onion yellows phytoplasma	0
PARC259536 ncbi	Psychrobacter arcticus 273-4	0
PACN267747 ncbi	Propionibacterium acnes KPA171202	0
OTSU357244 ncbi	Orientia tsutsugamushi Boryong	0
OIHE221109 ncbi	Oceanobacillus iheyensis HTE831	0
NWIN323098 ncbi	Nitrobacter winogradskyi Nb-255	0
NSP103690 ncbi	Nostoc sp. PCC 7120	0
NSEN222891 ncbi	Neorickettsia sennetsu Miyayama	0
NPHA348780 ncbi	Natronomonas pharaonis DSM 2160	0
NOCE323261 ncbi	Nitrosococcus oceani ATCC 19707	0
NMUL323848 ncbi	Nitrosospira multiformis ATCC 25196	0
NHAM323097 ncbi	Nitrobacter hamburgensis X14	0
NGON242231 ncbi	Neisseria gonorrhoeae FA 1090	0
NEUT335283 ncbi	Nitrosomonas eutropha C91	0
NEUR228410 ncbi	Nitrosomonas europaea ATCC 19718	0
MXAN246197 ncbi	Myxococcus xanthus DK 1622	0
MVAN350058 ncbi	Mycobacterium vanbaalenii PYR-1	0
MTUB419947 ncbi	Mycobacterium tuberculosis H37Ra	0
MTUB336982 ncbi	Mycobacterium tuberculosis F11	0
MTBRV ncbi	Mycobacterium tuberculosis H37Rv	0
MTBCDC ncbi	Mycobacterium tuberculosis CDC1551	0
MSYN262723 ncbi	Mycoplasma synoviae 53	0
MSUC221988 ncbi	Mannheimia succiniciproducens MBEL55E	0
MSP409	Methylobacterium sp.	0
MSP189918 ncbi	Mycobacterium sp. KMS	0
MSP164757 ncbi	Mycobacterium sp. JLS	0
MSP164756 ncbi	Mycobacterium sp. MCS	0
MPUL272635 ncbi	Mycoplasma pulmonis UAB CTIP	0
MPNE272634 ncbi	Mycoplasma pneumoniae M129	0
MPEN272633 ncbi	Mycoplasma penetrans HF-2	0
MMYC272632 ncbi	Mycoplasma mycoides mycoides SC str. PG1	0
MMOB267748 ncbi	Mycoplasma mobile 163K	0
MMAR394221 ncbi	Maricaulis maris MCS10	0
MLEP272631 ncbi	Mycobacterium leprae TN	0
MHYO295358 ncbi	Mycoplasma hyopneumoniae 232	0
MHYO262722 ncbi	Mycoplasma hyopneumoniae 7448	0
MHYO262719 ncbi	Mycoplasma hyopneumoniae J	0
MGIL350054 ncbi	Mycobacterium gilvum PYR-GCK	0
MGEN243273 ncbi	Mycoplasma genitalium G37	0
MFLO265311 ncbi	Mesoplasma florum L1	0
MEXT419610 ncbi	Methylobacterium extorquens PA1	0
MCAP340047 ncbi	Mycoplasma capricolum capricolum ATCC 27343	0
MCAP243233 ncbi	Methylococcus capsulatus Bath	0
MBOV410289 ncbi	Mycobacterium bovis BCG str. Pasteur 1173P2	0
MBOV233413 ncbi	Mycobacterium bovis AF2122/97	0
MAVI243243 ncbi	Mycobacterium avium 104	0
MART243272 ncbi	Mycoplasma arthritidis 158L3-1	0
MAER449447 ncbi	Microcystis aeruginosa NIES-843	0
MABS561007 ncbi	Mycobacterium abscessus ATCC 19977	0
LXYL281090 ncbi	Leifsonia xyli xyli CTCB07	0
LWEL386043 ncbi	Listeria welshimeri serovar 6b str. SLCC5334	0
LSAK314315 ncbi	Lactobacillus sakei sakei 23K	0
LREU557436 ncbi	Lactobacillus reuteri DSM 20016	0
LPNE400673 ncbi	Legionella pneumophila Corby	0
LPNE297246 ncbi	Legionella pneumophila Paris	0
LPNE297245 ncbi	Legionella pneumophila Lens	0
LPNE272624 ncbi	Legionella pneumophila pneumophila Philadelphia 1	0
LMON265669 ncbi	Listeria monocytogenes 4b F2365	0
LMON169963 ncbi	Listeria monocytogenes EGD-e	0
LMES203120 ncbi	Leuconostoc mesenteroides mesenteroides ATCC 8293	0
LLAC272623 ncbi	Lactococcus lactis lactis Il1403	0
LLAC272622 ncbi	Lactococcus lactis cremoris SK11	0
LJOH257314 ncbi	Lactobacillus johnsonii NCC 533	0
LINT267671 ncbi	Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130	0
LINT189518 ncbi	Leptospira interrogans serovar Lai str. 56601	0
LINN272626 ncbi	Listeria innocua Clip11262	0
LHEL405566 ncbi	Lactobacillus helveticus DPC 4571	0
LGAS324831 ncbi	Lactobacillus gasseri ATCC 33323	0
LDEL390333 ncbi	Lactobacillus delbrueckii bulgaricus ATCC 11842	0
LDEL321956 ncbi	Lactobacillus delbrueckii bulgaricus ATCC BAA-365	0
LCAS321967 ncbi	Lactobacillus casei ATCC 334	0
LBRE387344 ncbi	Lactobacillus brevis ATCC 367	0
LBOR355277 ncbi	Leptospira borgpetersenii serovar Hardjo-bovis JB197	0
LBOR355276 ncbi	Leptospira borgpetersenii serovar Hardjo-bovis L550	0
LACI272621 ncbi	Lactobacillus acidophilus NCFM	0
KRAD266940 ncbi	Kineococcus radiotolerans SRS30216	0
HWAL362976 ncbi	Haloquadratum walsbyi DSM 16790	0
HSP64091 ncbi	Halobacterium sp. NRC-1	0
HSOM228400 ncbi	Haemophilus somnus 2336	0
HSOM205914 ncbi	Haemophilus somnus 129PT	0
HSAL478009 ncbi	Halobacterium salinarum R1	0
HPYL85963 ncbi	Helicobacter pylori J99	0
HPYL357544 ncbi	Helicobacter pylori HPAG1	0
HPY ncbi	Helicobacter pylori 26695	0
HNEP81032	Hyphomonas neptunium	0
HMUK485914 ncbi	Halomicrobium mukohataei DSM 12286	0
HMAR272569 ncbi	Haloarcula marismortui ATCC 43049	0
HINF71421 ncbi	Haemophilus influenzae Rd KW20	0
HINF374930 ncbi	Haemophilus influenzae PittEE	0
HINF281310 ncbi	Haemophilus influenzae 86-028NP	0
HHAL349124 ncbi	Halorhodospira halophila SL1	0
HDUC233412 ncbi	Haemophilus ducreyi 35000HP	0
HAUR316274 ncbi	Herpetosiphon aurantiacus ATCC 23779	0
HACI382638 ncbi	Helicobacter acinonychis Sheeba	0
GVIO251221 ncbi	Gloeobacter violaceus PCC 7421	0
GOXY290633 ncbi	Gluconobacter oxydans 621H	0
GFOR411154 ncbi	Gramella forsetii KT0803	0
FSP1855	Frankia sp. EAN1pec	0
FSP106370 ncbi	Frankia sp. CcI3	0
FNUC190304 ncbi	Fusobacterium nucleatum nucleatum ATCC 25586	0
FMAG334413 ncbi	Finegoldia magna ATCC 29328	0
FALN326424 ncbi	Frankia alni ACN14a	0
ERUM302409 ncbi	Ehrlichia ruminantium Gardel	0
ERUM254945 ncbi	Ehrlichia ruminantium Welgevonden	0
EFAE226185 ncbi	Enterococcus faecalis V583	0
ECHA205920 ncbi	Ehrlichia chaffeensis Arkansas	0
ECAN269484 ncbi	Ehrlichia canis Jake	0
DRAD243230 ncbi	Deinococcus radiodurans R1	0
DNOD246195 ncbi	Dichelobacter nodosus VCS1703A	0
DGEO319795 ncbi	Deinococcus geothermalis DSM 11300	0
CTRA471473 ncbi	Chlamydia trachomatis L2b/UCH-1/proctitis	0
CTRA471472 ncbi	Chlamydia trachomatis 434/Bu	0
CSUL444179 ncbi	Candidatus Sulcia muelleri GWSS	0
CSP78	Caulobacter sp.	0
CSP501479	Citreicella sp. SE45	0
CPRO264201 ncbi	Candidatus Protochlamydia amoebophila UWE25	0
CPNE182082 ncbi	Chlamydophila pneumoniae TW-183	0
CPNE138677 ncbi	Chlamydophila pneumoniae J138	0
CPNE115713 ncbi	Chlamydophila pneumoniae CWL029	0
CPNE115711 ncbi	Chlamydophila pneumoniae AR39	0
CPER289380 ncbi	Clostridium perfringens SM101	0
CPER195103 ncbi	Clostridium perfringens ATCC 13124	0
CPER195102 ncbi	Clostridium perfringens 13	0
CPEL335992 ncbi	Candidatus Pelagibacter ubique HTCC1062	0
CMUR243161 ncbi	Chlamydia muridarum Nigg	0
CMIC443906 ncbi	Clavibacter michiganensis michiganensis NCPPB 382	0
CMIC31964 ncbi	Clavibacter michiganensis sepedonicus	0
CJEJ407148 ncbi	Campylobacter jejuni jejuni 81116	0
CJEJ360109 ncbi	Campylobacter jejuni doylei 269.97	0
CJEJ354242 ncbi	Campylobacter jejuni jejuni 81-176	0
CJEJ195099 ncbi	Campylobacter jejuni RM1221	0
CJEJ192222 ncbi	Campylobacter jejuni jejuni NCTC 11168	0
CJEI306537 ncbi	Corynebacterium jeikeium K411	0
CGLU196627 ncbi	Corynebacterium glutamicum ATCC 13032	0
CFET360106 ncbi	Campylobacter fetus fetus 82-40	0
CFEL264202 ncbi	Chlamydophila felis Fe/C-56	0
CEFF196164 ncbi	Corynebacterium efficiens YS-314	0
CDIP257309 ncbi	Corynebacterium diphtheriae NCTC 13129	0
CCAV227941 ncbi	Chlamydophila caviae GPIC	0
CBUR434922 ncbi	Coxiella burnetii Dugway 5J108-111	0
CBUR360115 ncbi	Coxiella burnetii RSA 331	0
CBUR227377 ncbi	Coxiella burnetii RSA 493	0
CBLO291272 ncbi	Candidatus Blochmannia pennsylvanicus BPEN	0
CBLO203907 ncbi	Candidatus Blochmannia floridanus	0
CAULO ncbi	Caulobacter crescentus CB15	0
CABO218497 ncbi	Chlamydophila abortus S26/3	0
BXEN266265 ncbi	Burkholderia xenovorans LB400	0
BTUR314724 ncbi	Borrelia turicatae 91E135	0
BTRI382640 ncbi	Bartonella tribocorum CIP 105476	0
BSUB ncbi	Bacillus subtilis subtilis 168	0
BSP107806 ncbi	Buchnera aphidicola APS (Acyrthosiphon pisum)	0
BQUI283165 ncbi	Bartonella quintana Toulouse	0
BPUM315750 ncbi	Bacillus pumilus SAFR-032	0
BPER257313 ncbi	Bordetella pertussis Tohama I	0
BLON206672 ncbi	Bifidobacterium longum NCC2705	0
BLIC279010 ncbi	Bacillus licheniformis ATCC 14580	0
BHER314723 ncbi	Borrelia hermsii DAH	0
BHEN283166 ncbi	Bartonella henselae Houston-1	0
BGAR290434 ncbi	Borrelia garinii PBi	0
BCLA66692 ncbi	Bacillus clausii KSM-K16	0
BCIC186490	Candidatus Baumannia cicadellinicola	0
BBUR224326 ncbi	Borrelia burgdorferi B31	0
BBAC360095 ncbi	Bartonella bacilliformis KC583	0
BAPH372461 ncbi	Buchnera aphidicola Cc (Cinara cedri)	0
BAPH198804 ncbi	Buchnera aphidicola Sg (Schizaphis graminum)	0
BAMY326423 ncbi	Bacillus amyloliquefaciens FZB42	0
BAFZ390236 ncbi	Borrelia afzelii PKo	0
AYEL322098 ncbi	Aster yellows witches-broom phytoplasma AYWB	0
AVAR240292 ncbi	Anabaena variabilis ATCC 29413	0
AURANTIMONAS	Aurantimonas manganoxydans SI85-9A1	0
ASP1667	Arthrobacter sp.	0
APLE434271 ncbi	Actinobacillus pleuropneumoniae serovar 3 str. JL03	0
APLE416269 ncbi	Actinobacillus pleuropneumoniae L20	0
APHA212042 ncbi	Anaplasma phagocytophilum HZ	0
APER272557 ncbi	Aeropyrum pernix K1	0
AORE350688 ncbi	Alkaliphilus oremlandii OhILAs	0
ANAE240017	Actinomyces oris MG1	0
AMAR329726 ncbi	Acaryochloris marina MBIC11017	0
AMAR234826 ncbi	Anaplasma marginale St. Maries	0
ALAI441768 ncbi	Acholeplasma laidlawii PG-8A	0
AFER243159 ncbi	Acidithiobacillus ferrooxidans ATCC 23270	0
ACEL351607 ncbi	Acidothermus cellulolyticus 11B	0
ACAU438753 ncbi	Azorhizobium caulinodans ORS 571	0
AAUR290340 ncbi	Arthrobacter aurescens TC1	0

Names of the homologs of the genes in the group in each of these orgs

	EG11169	EG11168	EG10357	EG10356
WPIP955
WPIP80849
UURE95667
UURE95664
UPAR505682
TWHI218496
TWHI203267
TVOL273116
TTHE300852
TTHE262724
TROS309801
TPEN368408
TPAL243276
TFUS269800
TERY203124
TELO197221
TDEN326298
TDEN292415
TCRU317025
TACI273075
STOK273063
STHE322159
STHE299768
STHE264199
SSUI391296
SSUI391295
SSP84588
SSP64471
SSP644076
SSP321332
SSP321327
SSP292414
SSP1148
SSP1131
SSOL273057
SSAP342451
SRUB309807
SPYO370554
SPYO370553
SPYO370552
SPYO370551
SPYO319701
SPYO293653
SPYO286636
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SPNE488221
SPNE487214
SPNE487213
SPNE171101
SPNE170187
SPNE1313
SMUT210007
SMEL266834
SMED366394
SMAR399550
SLAC55218
SHAE279808
SGOR29390
SGLO343509
SEPI176280
SEPI176279
SELO269084
SAUR93062
SAUR93061
SAUR426430
SAUR418127
SAUR367830
SAUR359787
SAUR359786
SAUR282459
SAUR282458
SAUR273036
SAUR196620
SAUR158879
SAUR158878
SAGA211110
SAGA208435
SAGA205921
SACI330779
RTYP257363
RSPH349102
RSP357808
RSAL288705
RRIC452659
RRIC392021
RPRO272947
RMAS416276
RFEL315456
RDEN375451
RCON272944
RCAS383372
RCAN293613
RBEL391896
RBEL336407
RAKA293614
PTOR263820
PSP56811
PSP117
PPEN278197
PMUL272843
PMAR93060
PMAR74547
PMAR74546
PMAR59920
PMAR167555
PMAR167546
PMAR167542
PMAR167540
PMAR167539
PMAR146891
PLUM243265
PCRY335284
PCAR338963
PAST100379
PARC259536
PACN267747
OTSU357244
OIHE221109
NWIN323098
NSP103690
NSEN222891
NPHA348780
NOCE323261
NMUL323848
NHAM323097
NGON242231
NEUT335283
NEUR228410
MXAN246197
MVAN350058
MTUB419947
MTUB336982
MTBRV
MTBCDC
MSYN262723
MSUC221988
MSP409
MSP189918
MSP164757
MSP164756
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAR394221
MLEP272631
MHYO295358
MHYO262722
MHYO262719
MGIL350054
MGEN243273
MFLO265311
MEXT419610
MCAP340047
MCAP243233
MBOV410289
MBOV233413
MAVI243243
MART243272
MAER449447
MABS561007
LXYL281090
LWEL386043
LSAK314315
LREU557436
LPNE400673
LPNE297246
LPNE297245
LPNE272624
LMON265669
LMON169963
LMES203120
LLAC272623
LLAC272622
LJOH257314
LINT267671
LINT189518
LINN272626
LHEL405566
LGAS324831
LDEL390333
LDEL321956
LCAS321967
LBRE387344
LBOR355277
LBOR355276
LACI272621
KRAD266940
HWAL362976
HSP64091
HSOM228400
HSOM205914
HSAL478009
HPYL85963
HPYL357544
HPY
HNEP81032
HMUK485914
HMAR272569
HINF71421
HINF374930
HINF281310
HHAL349124
HDUC233412
HAUR316274
HACI382638
GVIO251221
GOXY290633
GFOR411154
FSP1855
FSP106370
FNUC190304
FMAG334413
FALN326424
ERUM302409
ERUM254945
EFAE226185
ECHA205920
ECAN269484
DRAD243230
DNOD246195
DGEO319795
CTRA471473
CTRA471472
CSUL444179
CSP78
CSP501479
CPRO264201
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPER289380
CPER195103
CPER195102
CPEL335992
CMUR243161
CMIC443906
CMIC31964
CJEJ407148
CJEJ360109
CJEJ354242
CJEJ195099
CJEJ192222
CJEI306537
CGLU196627
CFET360106
CFEL264202
CEFF196164
CDIP257309
CCAV227941
CBUR434922
CBUR360115
CBUR227377
CBLO291272
CBLO203907
CAULO
CABO218497
BXEN266265
BTUR314724
BTRI382640
BSUB
BSP107806
BQUI283165
BPUM315750
BPER257313
BLON206672
BLIC279010
BHER314723
BHEN283166
BGAR290434
BCLA66692
BCIC186490
BBUR224326
BBAC360095
BAPH372461
BAPH198804
BAMY326423
BAFZ390236
AYEL322098
AVAR240292
AURANTIMONAS
ASP1667
APLE434271
APLE416269
APHA212042
APER272557
AORE350688
ANAE240017
AMAR329726
AMAR234826
ALAI441768
AFER243159
ACEL351607
ACAU438753
AAUR290340

Organism features enriched in list (features available for 277 out of the 300 orgs in the list)

Feature	Pvalue	Num occurrences in list	Total num occurrences
Arrangment:Chains	0.0018460	56	92
Arrangment:Clusters	0.0000490	16	17
Arrangment:Pairs	0.0051603	42	112
Disease:Pharyngitis	0.0024611	8	8
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever	0.0002505	11	11
Disease:Wide_range_of_infections	0.0002505	11	11
Disease:bronchitis_and_pneumonitis	0.0024611	8	8
Disease:gastroenteritis	0.0024834	1	13
Disease:meningitis	0.0052504	7	7
Endospores:No	0.0000155	124	211
Endospores:Yes	0.0002006	13	53
GC_Content_Range4:0-40	3.706e-18	151	213
GC_Content_Range4:40-60	7.140e-11	69	224
GC_Content_Range4:60-100	0.0056648	57	145
GC_Content_Range7:0-30	0.0006072	33	47
GC_Content_Range7:30-40	2.912e-13	118	166
GC_Content_Range7:50-60	6.853e-10	23	107
GC_Content_Range7:60-70	0.0055823	52	134
Genome_Size_Range5:0-2	6.511e-16	116	155
Genome_Size_Range5:2-4	0.0000314	116	197
Genome_Size_Range5:4-6	1.389e-23	33	184
Genome_Size_Range5:6-10	0.0007695	12	47
Genome_Size_Range9:0-1	3.077e-8	26	27
Genome_Size_Range9:1-2	2.452e-9	90	128
Genome_Size_Range9:2-3	3.023e-6	79	120
Genome_Size_Range9:4-5	2.906e-9	20	96
Genome_Size_Range9:5-6	2.884e-12	13	88
Genome_Size_Range9:6-8	0.0011704	9	38
Gram_Stain:Gram_Neg	1.667e-9	123	333
Gram_Stain:Gram_Pos	8.569e-10	103	150
Habitat:Aquatic	0.0004319	29	91
Habitat:Host-associated	1.790e-10	134	206
Habitat:Multiple	0.0013990	69	178
Motility:No	1.175e-7	99	151
Motility:Yes	1.531e-16	78	267
Optimal_temp.:25-30	0.0030788	3	19
Optimal_temp.:30-35	0.0052504	7	7
Optimal_temp.:30-37	1.129e-6	18	18
Oxygen_Req:Anaerobic	2.505e-11	19	102
Pathogenic_in:Human	0.0003668	120	213
Pathogenic_in:No	0.0034014	93	226
Salinity:Extreme_halophilic	0.0052504	7	7
Shape:Coccus	9.688e-10	64	82
Shape:Irregular_coccus	0.0002276	1	17
Shape:Pleomorphic	0.0024611	8	8
Shape:Rod	7.194e-13	123	347
Shape:Sphere	0.0001226	17	19
Shape:Spiral	0.0076396	23	34
Temp._range:Hyperthermophilic	0.0066949	5	23

ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 3
Effective number of orgs (counting one per cluster within 468 clusters): 3

Organism list
Homologs in each organism in the list
Features enriched in organism list

Follow (ncbi) link, when present, to find the set of organism features for each organism

Org ID	Org Name	Pvalue	# genes in tgt genome found in org	# genes in group found in org
IHOS453591 ncbi	Ignicoccus hospitalis KIN4/I	0.0023227	236	4
HBUT415426 ncbi	Hyperthermus butylicus DSM 5456	0.0046209	280	4
PISL384616 ncbi	Pyrobaculum islandicum DSM 4184	0.0081048	322	4

Names of the homologs of the genes in the group in each of these orgs

	EG11169	EG11168	EG10357	EG10356
IHOS453591	IGNI_0678	IGNI_0678	IGNI_0678	IGNI_0678
HBUT415426	HBUT_0158	HBUT_0159	HBUT_0158	HBUT_0158
PISL384616	PISL_0951	PISL_0950	PISL_0951	PISL_0951

Organism features enriched in list (features available for 3 out of the 3 orgs in the list)

Feature	Pvalue	Num occurrences in list	Total num occurrences
Optimal_temp.:95-106	0.0051458	1	1
Oxygen_Req:Anaerobic	0.0052258	3	102
Temp._range:Hyperthermophilic	0.0043121	2	23

ORGANISMS DEPLETED FOR GROUP:

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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group

Pathway or complex	# Orgs containing it	# of those orgs also containing candidate	Pearson Coeff
PWY-5669 (phosphatidylethanolamine biosynthesis I)	416	267	0.4548
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)	149	129	0.4311
GLYCOCAT-PWY (glycogen degradation I)	246	182	0.4176
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)	195	154	0.4163
PWY-6268 (adenosylcobalamin salvage from cobalamin)	317	215	0.4007

PAIRWISE GENOME CONTEXT SCORE MATRIX:

	EG11168	EG10357	EG10356
EG11169	0.999979	0.999983	0.999982
EG11168		0.999946	0.999944
EG10357			0.999992
EG10356

PAIRWISE BLAST SCORES:

	EG11169	EG11168	EG10357	EG10356
EG11169	0.0f0	-	5.8e-11	7.4e-11
EG11168	-	0.0f0	4.4e-4	9.5e-4
EG10357	-	-	0.0f0	0
EG10356	-	-	0	0.0f0

PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- LTARTDEHYDRA-CPLX (L-tartrate dehydratase) (degree of match pw to cand: 1.000, degree of match cand to pw: 0.500, average score: 1.000)
  Genes in pathway or complex:
   *in cand* 1.0000 1.0000 EG11169 (ttdB) TTDB-MONOMER (L-tartrate dehydratase, β subunit)
   *in cand* 1.0000 0.9999 EG11168 (ttdA) TTDA-MONOMER (L-tartrate dehydratase, α subunit)
  Genes in candidate but not in this pathway or complex:
   *in cand* 1.0000 0.9999 EG10356 (fumA) FUMA-MONOMER (fumarase A monomer)
   *in cand* 1.0000 0.9999 EG10357 (fumB) FUMB-MONOMER (fumarase B monomer)

- FERMENTATION-PWY (mixed acid fermentation) (degree of match pw to cand: 0.071, degree of match cand to pw: 0.500, average score: 0.597)
  Genes in pathway or complex:
             0.7988 0.7571 EG20173 (pta) PHOSACETYLTRANS-MONOMER (Pta)
             0.8480 0.8202 EG10027 (ackA) ACETATEKINA-MONOMER (propionate kinase / acetate kinase)
             0.8169 0.7209 G7627 (tdcE) KETOBUTFORMLY-MONOMER (2-ketobutyrate formate-lyase / pyruvate formate-lyase 4)
             0.8556 0.7790 EG10701 (pflB) PYRUVFORMLY-MONOMER (PflB)
             0.5154 0.3498 G6775 (adhP) ADHP-MONOMER (ethanol dehydrogenase)
             0.7647 0.6116 EG10031 (adhE) ADHE-MONOMER (AdhE)
             0.9702 0.9632 EG10803 (pykA) PKII-MONOMER (pyruvate kinase II monomer)
             0.3121 0.1799 EG10804 (pykF) PKI-MONOMER (pyruvate kinase I monomer)
             0.3902 0.2061 G592 (ldhA) DLACTDEHYDROGNAD-MONOMER (D-lactate dehydrogenase)
             0.9939 0.9825 EG10358 (fumC) FUMC-MONOMER (fumarase C monomer)
   *in cand* 1.0000 0.9999 EG10357 (fumB) FUMB-MONOMER (fumarase B monomer)
   *in cand* 1.0000 0.9999 EG10356 (fumA) FUMA-MONOMER (fumarase A monomer)
             0.7146 0.4984 EG10576 (mdh) MALATE-DEHASE-MONOMER (Mdh)
             0.6194 0.5205 EG10756 (ppc) PEPCARBOX-MONOMER (Ppc)
             0.8761 0.8127 EG10477 (hycD) HYCD-MONOMER (hydrogenase 3, membrane subunit)
             0.6858 0.6039 EG10476 (hycC) HYCC-MONOMER (hydrogenase 3, membrane subunit)
             0.9163 0.8943 EG10479 (hycF) HYCF-MONOMER (formate hydrogenlyase complex iron-sulfur protein)
             0.9163 0.8691 EG10480 (hycG) HYCG-MONOMER (hydrogenase 3 and formate hydrogenlyase complex, HycG subunit)
             0.7967 0.7240 EG10475 (hycB) HYCBSMALL-MONOMER (hydrogenase 3, Fe-S subunit)
             0.7872 0.6668 EG10478 (hycE) HYCELARGE-MONOMER (hydrogenase 3, large subunit)
                NIL    NIL EG10285 (fdhF) FORMATEDEHYDROGH-MONOMER (formate dehydrogenase H)
             0.5162 0.2849 EG10333 (frdD) FUM-MEMB2 (fumarate reductase membrane protein)
             0.5146 0.2856 EG10332 (frdC) FUM-MEMB1 (fumarate reductase membrane protein)
             0.8570 0.8224 EG10331 (frdB) FUM-FE-S (fumarate reductase iron-sulfur protein)
             0.8650 0.8056 EG10330 (frdA) FUM-FLAVO (fumarate reductase flavoprotein)
             0.4783 0.3355 EG10402 (gltA) CITSYN-MONOMER (citrate synthase monomer)
             0.8371 0.7752 EG12316 (acnB) ACONITATEDEHYDRB-MONOMER (bifunctional aconitate hydratase 2 and 2-methylisocitrate dehydratase)
             0.4910 0.3631 EG10489 (icd) ISOCITDEH-SUBUNIT (Icd)
  Genes in candidate but not in this pathway or complex:
   *in cand* 1.0000 0.9999 EG11168 (ttdA) TTDA-MONOMER (L-tartrate dehydratase, α subunit)
   *in cand* 1.0000 1.0000 EG11169 (ttdB) TTDB-MONOMER (L-tartrate dehydratase, β subunit)

- ANARESP1-PWY (respiration (anaerobic)) (degree of match pw to cand: 0.074, degree of match cand to pw: 0.500, average score: 0.592)
  Genes in pathway or complex:
             0.9702 0.9632 EG10803 (pykA) PKII-MONOMER (pyruvate kinase II monomer)
             0.3121 0.1799 EG10804 (pykF) PKI-MONOMER (pyruvate kinase I monomer)
             0.1963 0.0962 EG10543 (lpd) E3-MONOMER (E3 monomer)
             0.2152 0.0714 EG10025 (aceF) ACEF-LIPOATE (AceF-lipoate)
             0.2767 0.0989 EG10024 (aceE) E1P-MONOMER (subunit of E1p component of pyruvate dehydrogenase complex)
             0.4783 0.3355 EG10402 (gltA) CITSYN-MONOMER (citrate synthase monomer)
             0.8371 0.7752 EG12316 (acnB) ACONITATEDEHYDRB-MONOMER (bifunctional aconitate hydratase 2 and 2-methylisocitrate dehydratase)
             0.4910 0.3631 EG10489 (icd) ISOCITDEH-SUBUNIT (Icd)
             0.6194 0.5205 EG10756 (ppc) PEPCARBOX-MONOMER (Ppc)
             0.7146 0.4984 EG10576 (mdh) MALATE-DEHASE-MONOMER (Mdh)
             0.9939 0.9825 EG10358 (fumC) FUMC-MONOMER (fumarase C monomer)
   *in cand* 1.0000 0.9999 EG10357 (fumB) FUMB-MONOMER (fumarase B monomer)
   *in cand* 1.0000 0.9999 EG10356 (fumA) FUMA-MONOMER (fumarase A monomer)
             0.8169 0.7209 G7627 (tdcE) KETOBUTFORMLY-MONOMER (2-ketobutyrate formate-lyase / pyruvate formate-lyase 4)
             0.8556 0.7790 EG10701 (pflB) PYRUVFORMLY-MONOMER (PflB)
             0.7085 0.6522 EG10258 (eno) ENOLASE-MONOMER (Eno)
             0.8761 0.8127 EG10477 (hycD) HYCD-MONOMER (hydrogenase 3, membrane subunit)
             0.6858 0.6039 EG10476 (hycC) HYCC-MONOMER (hydrogenase 3, membrane subunit)
             0.9163 0.8943 EG10479 (hycF) HYCF-MONOMER (formate hydrogenlyase complex iron-sulfur protein)
             0.9163 0.8691 EG10480 (hycG) HYCG-MONOMER (hydrogenase 3 and formate hydrogenlyase complex, HycG subunit)
             0.7967 0.7240 EG10475 (hycB) HYCBSMALL-MONOMER (hydrogenase 3, Fe-S subunit)
             0.7872 0.6668 EG10478 (hycE) HYCELARGE-MONOMER (hydrogenase 3, large subunit)
                NIL    NIL EG10285 (fdhF) FORMATEDEHYDROGH-MONOMER (formate dehydrogenase H)
             0.5162 0.2849 EG10333 (frdD) FUM-MEMB2 (fumarate reductase membrane protein)
             0.5146 0.2856 EG10332 (frdC) FUM-MEMB1 (fumarate reductase membrane protein)
             0.8570 0.8224 EG10331 (frdB) FUM-FE-S (fumarate reductase iron-sulfur protein)
             0.8650 0.8056 EG10330 (frdA) FUM-FLAVO (fumarate reductase flavoprotein)
  Genes in candidate but not in this pathway or complex:
   *in cand* 1.0000 0.9999 EG11168 (ttdA) TTDA-MONOMER (L-tartrate dehydratase, α subunit)
   *in cand* 1.0000 1.0000 EG11169 (ttdB) TTDB-MONOMER (L-tartrate dehydratase, β subunit)

- TCA (TCA cycle) (degree of match pw to cand: 0.111, degree of match cand to pw: 0.500, average score: 0.801)
  Genes in pathway or complex:
             0.7146 0.4984 EG10576 (mdh) MALATE-DEHASE-MONOMER (Mdh)
             0.9939 0.9825 EG10358 (fumC) FUMC-MONOMER (fumarase C monomer)
   *in cand* 1.0000 0.9999 EG10357 (fumB) FUMB-MONOMER (fumarase B monomer)
   *in cand* 1.0000 0.9999 EG10356 (fumA) FUMA-MONOMER (fumarase A monomer)
             0.5445 0.5039 EG10981 (sucC) SUCCCOASYN-BETA (succinyl-CoA synthetase, β subunit)
             0.3794 0.2689 EG10982 (sucD) SUCCCOASYN-ALPHA (succinyl-CoA synthetase, α subunit)
             0.1963 0.0962 EG10543 (lpd) E3-MONOMER (E3 monomer)
             0.6151 0.5145 EG10980 (sucB) E2O-MONOMER (SucB)
             0.7310 0.5797 EG10979 (sucA) E1O-MONOMER (subunit of E1(0) component of 2-oxoglutarate dehydrogenase)
             0.4910 0.3631 EG10489 (icd) ISOCITDEH-SUBUNIT (Icd)
             0.4783 0.3355 EG10402 (gltA) CITSYN-MONOMER (citrate synthase monomer)
             0.6270 0.4893 EG11325 (acnA) ACONITASE-MONOMER (aconitate hydratase 1)
             0.8371 0.7752 EG12316 (acnB) ACONITATEDEHYDRB-MONOMER (bifunctional aconitate hydratase 2 and 2-methylisocitrate dehydratase)
             0.6822 0.5683 EG10934 (sdhD) SDH-MEMB2 (succinate dehydrogenase membrane protein)
             0.6505 0.5404 EG10933 (sdhC) SDH-MEMB1 (succinate dehydrogenase membrane protein)
             0.8752 0.8133 EG10932 (sdhB) SDH-FE-S (succinate dehydrogenase iron-sulfur protein)
             0.8020 0.6494 EG10931 (sdhA) SDH-FLAVO (succinate dehydrogenase flavoprotein)
             0.3803 0.3596 EG12069 (mqo) EG12069-MONOMER (malate:quinone oxidoreductase)
  Genes in candidate but not in this pathway or complex:
   *in cand* 1.0000 0.9999 EG11168 (ttdA) TTDA-MONOMER (L-tartrate dehydratase, α subunit)
   *in cand* 1.0000 1.0000 EG11169 (ttdB) TTDB-MONOMER (L-tartrate dehydratase, β subunit)

- TCA-GLYOX-BYPASS (superpathway of glyoxylate bypass and TCA) (degree of match pw to cand: 0.100, degree of match cand to pw: 0.500, average score: 0.748)
  Genes in pathway or complex:
             0.7721 0.7175 EG10022 (aceA) ISOCIT-LYASE-MONOMER (isocitrate lyase monomer)
             0.5329 0.4885 EG10023 (aceB) MALATE-SYNTHASE (malate synthase A)
             0.3803 0.3596 EG12069 (mqo) EG12069-MONOMER (malate:quinone oxidoreductase)
             0.6822 0.5683 EG10934 (sdhD) SDH-MEMB2 (succinate dehydrogenase membrane protein)
             0.6505 0.5404 EG10933 (sdhC) SDH-MEMB1 (succinate dehydrogenase membrane protein)
             0.8752 0.8133 EG10932 (sdhB) SDH-FE-S (succinate dehydrogenase iron-sulfur protein)
             0.8020 0.6494 EG10931 (sdhA) SDH-FLAVO (succinate dehydrogenase flavoprotein)
             0.8371 0.7752 EG12316 (acnB) ACONITATEDEHYDRB-MONOMER (bifunctional aconitate hydratase 2 and 2-methylisocitrate dehydratase)
             0.6270 0.4893 EG11325 (acnA) ACONITASE-MONOMER (aconitate hydratase 1)
             0.4783 0.3355 EG10402 (gltA) CITSYN-MONOMER (citrate synthase monomer)
             0.4910 0.3631 EG10489 (icd) ISOCITDEH-SUBUNIT (Icd)
             0.1963 0.0962 EG10543 (lpd) E3-MONOMER (E3 monomer)
             0.6151 0.5145 EG10980 (sucB) E2O-MONOMER (SucB)
             0.7310 0.5797 EG10979 (sucA) E1O-MONOMER (subunit of E1(0) component of 2-oxoglutarate dehydrogenase)
             0.5445 0.5039 EG10981 (sucC) SUCCCOASYN-BETA (succinyl-CoA synthetase, β subunit)
             0.3794 0.2689 EG10982 (sucD) SUCCCOASYN-ALPHA (succinyl-CoA synthetase, α subunit)
   *in cand* 1.0000 0.9999 EG10356 (fumA) FUMA-MONOMER (fumarase A monomer)
   *in cand* 1.0000 0.9999 EG10357 (fumB) FUMB-MONOMER (fumarase B monomer)
             0.9939 0.9825 EG10358 (fumC) FUMC-MONOMER (fumarase C monomer)
             0.7146 0.4984 EG10576 (mdh) MALATE-DEHASE-MONOMER (Mdh)
  Genes in candidate but not in this pathway or complex:
   *in cand* 1.0000 0.9999 EG11168 (ttdA) TTDA-MONOMER (L-tartrate dehydratase, α subunit)
   *in cand* 1.0000 1.0000 EG11169 (ttdB) TTDB-MONOMER (L-tartrate dehydratase, β subunit)

- GLYCOLYSIS-TCA-GLYOX-BYPASS (superpathway of glycolysis, pyruvate dehydrogenase, TCA, and glyoxylate bypass) (degree of match pw to cand: 0.049, degree of match cand to pw: 0.500, average score: 0.600)
  Genes in pathway or complex:
             0.7146 0.4984 EG10576 (mdh) MALATE-DEHASE-MONOMER (Mdh)
             0.9939 0.9825 EG10358 (fumC) FUMC-MONOMER (fumarase C monomer)
   *in cand* 1.0000 0.9999 EG10357 (fumB) FUMB-MONOMER (fumarase B monomer)
   *in cand* 1.0000 0.9999 EG10356 (fumA) FUMA-MONOMER (fumarase A monomer)
             0.5445 0.5039 EG10981 (sucC) SUCCCOASYN-BETA (succinyl-CoA synthetase, β subunit)
             0.3794 0.2689 EG10982 (sucD) SUCCCOASYN-ALPHA (succinyl-CoA synthetase, α subunit)
             0.6151 0.5145 EG10980 (sucB) E2O-MONOMER (SucB)
             0.7310 0.5797 EG10979 (sucA) E1O-MONOMER (subunit of E1(0) component of 2-oxoglutarate dehydrogenase)
             0.4910 0.3631 EG10489 (icd) ISOCITDEH-SUBUNIT (Icd)
             0.4783 0.3355 EG10402 (gltA) CITSYN-MONOMER (citrate synthase monomer)
             0.6270 0.4893 EG11325 (acnA) ACONITASE-MONOMER (aconitate hydratase 1)
             0.8371 0.7752 EG12316 (acnB) ACONITATEDEHYDRB-MONOMER (bifunctional aconitate hydratase 2 and 2-methylisocitrate dehydratase)
             0.6822 0.5683 EG10934 (sdhD) SDH-MEMB2 (succinate dehydrogenase membrane protein)
             0.6505 0.5404 EG10933 (sdhC) SDH-MEMB1 (succinate dehydrogenase membrane protein)
             0.8752 0.8133 EG10932 (sdhB) SDH-FE-S (succinate dehydrogenase iron-sulfur protein)
             0.8020 0.6494 EG10931 (sdhA) SDH-FLAVO (succinate dehydrogenase flavoprotein)
             0.3803 0.3596 EG12069 (mqo) EG12069-MONOMER (malate:quinone oxidoreductase)
             0.5329 0.4885 EG10023 (aceB) MALATE-SYNTHASE (malate synthase A)
             0.7721 0.7175 EG10022 (aceA) ISOCIT-LYASE-MONOMER (isocitrate lyase monomer)
             0.8436 0.6450 EG11245 (yggF) EG11245-MONOMER (fructose-1,6-bisphosphatase)
             0.1475 0.0715 EG11239 (ybhA) EG11239-MONOMER (pyridoxal phosphatase / fructose 1,6-bisphosphatase)
             0.8086 0.4688 EG11517 (glpX) EG11517-MONOMER (fructose 1,6-bisphosphatase II)
             0.1014 0.0692 EG10283 (fbp) F16B-MONOMER (fructose-1,6-bisphosphatase monomer)
             0.8775 0.7753 EG10759 (ppsA) PEPSYNTH-MONOMER (phosphoenolpyruvate synthetase)
             0.7208 0.5977 EG10702 (pgi) PGLUCISOM (Pgi)
             0.6367 0.4660 EG10699 (pfkA) 6PFK-1-MONOMER (6-phosphofructokinase-1 monomer)
             0.3814 0.1564 EG10700 (pfkB) 6PFK-2-MONOMER (6-phosphofructokinase-2 monomer)
             0.3932 0.1904 G7129 (fbaB) FRUCBISALD-CLASSI-MONOMER (fructose bisphosphate aldolase monomer)
             0.2147 0.1062 EG10282 (fbaA) FRUCTBISALD-CLASSII-MONOMER (fructose bisphosphate aldolase monomer)
             0.9124 0.8660 EG11015 (tpiA) TPI-MONOMER (triose phosphate isomerase monomer)
             0.5177 0.2544 EG10367 (gapA) GAPDH-A-MONOMER (glyceraldehyde 3-phosphate dehydrogenase-A monomer)
             0.0620 0.0026 EG10703 (pgk) PGK (phosphoglycerate kinase)
             0.1883 0.1145 EG12296 (gpmM) PGMI-MONOMER (phosphoglycerate mutase, cofactor independent)
             0.3184 0.2480 EG12164 (ytjC) PGAM2-MONOMER (phosphoglycerate mutase 2)
             0.4824 0.3892 EG11699 (gpmA) GPMA-MONOMER (phosphoglyceromutase 1 monomer)
             0.7085 0.6522 EG10258 (eno) ENOLASE-MONOMER (Eno)
             0.3121 0.1799 EG10804 (pykF) PKI-MONOMER (pyruvate kinase I monomer)
             0.9702 0.9632 EG10803 (pykA) PKII-MONOMER (pyruvate kinase II monomer)
             0.1963 0.0962 EG10543 (lpd) E3-MONOMER (E3 monomer)
             0.2152 0.0714 EG10025 (aceF) ACEF-LIPOATE (AceF-lipoate)
             0.2767 0.0989 EG10024 (aceE) E1P-MONOMER (subunit of E1p component of pyruvate dehydrogenase complex)
  Genes in candidate but not in this pathway or complex:
   *in cand* 1.0000 0.9999 EG11168 (ttdA) TTDA-MONOMER (L-tartrate dehydratase, α subunit)
   *in cand* 1.0000 1.0000 EG11169 (ttdB) TTDB-MONOMER (L-tartrate dehydratase, β subunit)

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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG11168 EG11169 (centered at EG11169)
EG10356 (centered at EG10356)
EG10357 (centered at EG10357)

ORG:REPLICON:CIRC?\GENE	IN REF LIST	EG11169	EG11168	EG10357	EG10356
		320/623	272/623	301/623	298/623
AAEO224324:0:T	yes	0	74	0	0
AAVE397945:0:T	yes	0	0	0	0
ABAC204669:0:T	yes	0	0	0	0
ABAU360910:0:T	yes	0	0	0	0
ABOR393595:0:T	yes	0	0	0	0
ABUT367737:0:T	yes	0	0	0	0
ACRY349163:8:T	yes	0	-	0	0
ADEH290397:0:T	yes	0	-	1822	1822
AEHR187272:0:T	yes	0	0	0	0
AFUL224325:0:T	yes	0	1	0	-
AHYD196024:0:T	yes	0	0	0	0
AMET293826:0:T	yes	0	1	0	0
ASAL382245:5:T	yes	0	0	0	0
ASP232721:2:T	yes	0	0	0	0
ASP62928:0:T	yes	0	0	0	0
ASP62977:0:T	yes	0	0	0	0
ASP76114:2:T	yes	0	0	0	0
BABO262698:1:T	no	0	-	0	0
BAMB339670:3:T	no	0	0	0	0
BAMB398577:3:T	no	0	0	0	0
BANT260799:0:T	no	0	0	0	0
BANT261594:2:T	no	0	0	0	0
BANT568206:2:T	yes	0	0	0	0
BANT592021:2:T	no	0	0	0	0
BBAC264462:0:T	yes	0	0	0	0
BBRO257310:0:T	yes	0	1	3760	3760
BCAN483179:1:T	no	0	-	0	0
BCEN331271:0:T	no	0	0	0	0
BCEN331272:3:T	yes	0	0	0	0
BCER226900:1:T	yes	0	0	0	0
BCER288681:0:T	no	0	0	0	0
BCER315749:1:T	yes	0	0	0	0
BCER405917:1:T	yes	0	0	0	0
BCER572264:1:T	no	0	0	0	0
BFRA272559:1:T	yes	0	-	0	0
BFRA295405:0:T	no	0	-	0	0
BHAL272558:0:T	yes	0	0	0	0
BJAP224911:0:F	yes	0	-	0	0
BMAL243160:0:T	no	0	0	0	0
BMAL320388:0:T	no	0	0	0	0
BMAL320389:0:T	yes	0	0	0	0
BMEL224914:1:T	no	0	-	0	0
BMEL359391:1:T	no	0	-	0	0
BOVI236:1:T	yes	0	-	0	0
BPAR257311:0:T	no	0	1	3143	3143
BPET94624:0:T	yes	1	0	391	3456
BPSE272560:0:T	yes	0	0	0	0
BPSE320372:0:T	no	0	0	0	0
BPSE320373:0:T	no	0	0	0	0
BSP36773:2:T	yes	0	0	0	0
BSP376:0:T	yes	0	0	0	0
BSUI204722:1:T	yes	0	-	0	0
BSUI470137:1:T	no	0	-	0	0
BTHA271848:0:T	no	0	0	0	0
BTHE226186:0:T	yes	0	-	0	0
BTHU281309:1:T	no	0	0	0	0
BTHU412694:1:T	no	0	0	0	0
BVIE269482:7:T	yes	0	0	0	0
BWEI315730:4:T	yes	0	0	-	0
CACE272562:1:T	yes	0	1	0	0
CBEI290402:0:T	yes	1	0	1	1
CBOT36826:1:T	no	0	1	0	0
CBOT441770:0:T	yes	0	1	0	0
CBOT441771:0:T	no	0	1	0	0
CBOT441772:1:T	no	0	1	0	0
CBOT498213:1:T	no	0	1	0	0
CBOT508765:1:T	yes	1	0	1	1
CBOT515621:2:T	yes	0	1	0	0
CBOT536232:0:T	no	0	1	0	0
CCHL340177:0:T	yes	0	0	0	0
CCON360104:2:T	yes	1	0	1430	1430
CCUR360105:0:T	yes	1	0	-	-
CDES477974:0:T	yes	0	1	0	0
CDIF272563:1:T	yes	1	0	1	1
CHOM360107:1:T	yes	1	0	1	1
CHUT269798:0:T	yes	0	-	0	0
CHYD246194:0:T	yes	0	1277	0	0
CJAP155077:0:T	yes	0	0	0	0
CKLU431943:1:T	yes	1	0	1	1
CKOR374847:0:T	yes	1	0	1	0
CMAQ397948:0:T	yes	37	0	37	37
CMET456442:0:T	yes	0	1	-	-
CNOV386415:0:T	yes	1	0	1	1
CPHY357809:0:T	yes	1	0	1	1
CPSY167879:0:T	yes	0	0	0	0
CRUT413404:0:T	yes	0	0	0	0
CSAL290398:0:T	yes	0	0	0	0
CTEP194439:0:T	yes	0	0	-	0
CTET212717:0:T	yes	0	1	0	0
CVES412965:0:T	yes	0	0	0	0
CVIO243365:0:T	yes	0	0	0	0
DARO159087:0:T	yes	0	0	0	0
DDES207559:0:T	yes	0	1	0	0
DETH243164:0:T	yes	1	0	1	1
DHAF138119:0:T	yes	0	1	0	0
DOLE96561:0:T	yes	-	-	0	0
DPSY177439:2:T	yes	0	0	0	0
DRED349161:0:T	yes	0	1	0	0
DSHI398580:5:T	yes	0	0	0	0
DSP216389:0:T	yes	1	0	1	1
DSP255470:0:T	no	1	0	1	1
DVUL882:1:T	yes	1	0	1	1
ECAR218491:0:T	yes	0	-	0	0
ECOL199310:0:T	no	1	0	1292	1292
ECOL316407:0:T	no	1	0	1052	1052
ECOL331111:6:T	no	1	0	1106	1106
ECOL362663:0:T	no	1	0	1196	1196
ECOL364106:1:T	no	1	0	1202	1202
ECOL405955:2:T	yes	1611	1610	0	0
ECOL409438:6:T	yes	1	0	1116	1116
ECOL413997:0:T	no	1	0	1087	1087
ECOL439855:4:T	no	1715	1714	0	0
ECOL469008:0:T	no	0	1	1362	1362
ECOL481805:0:T	no	0	1	3275	3275
ECOL585034:0:T	no	1	0	1104	1104
ECOL585035:0:T	no	1	0	1118	1118
ECOL585055:0:T	no	1	0	1117	1117
ECOL585056:2:T	no	1645	1644	0	0
ECOL585057:0:T	no	1	0	993	993
ECOL585397:0:T	no	1880	1879	0	0
ECOL83334:0:T	no	1668	1667	0	0
ECOLI:0:T	no	1481	1480	2553	0
ECOO157:0:T	no	3267	3266	0	0
EFER585054:1:T	yes	0	1	928	928
ELIT314225:0:T	yes	0	0	0	0
ESP42895:1:T	yes	0	-	0	0
FJOH376686:0:T	yes	0	-	0	0
FNOD381764:0:T	yes	0	1	0	0
FPHI484022:1:T	yes	0	0	0	0
FRANT:0:T	no	0	0	0	0
FSUC59374:0:T	yes	-	-	0	0
FTUL351581:0:T	no	0	0	0	0
FTUL393011:0:T	no	0	0	0	0
FTUL393115:0:T	yes	0	0	0	0
FTUL401614:0:T	yes	0	0	0	0
FTUL418136:0:T	no	0	0	0	0
FTUL458234:0:T	no	0	0	0	0
GBET391165:0:T	yes	0	-	0	0
GKAU235909:1:T	yes	0	0	0	0
GMET269799:1:T	yes	0	-	0	0
GSUL243231:0:T	yes	0	0	0	0
GTHE420246:1:T	yes	0	0	0	0
GURA351605:0:T	yes	0	-	0	0
HARS204773:0:T	yes	2296	2295	0	0
HBUT415426:0:T	yes	0	1	0	0
HCHE349521:0:T	yes	0	0	0	0
HHEP235279:0:T	yes	1	0	1	1
HMOD498761:0:T	yes	0	1	0	0
IHOS453591:0:T	yes	0	0	0	0
ILOI283942:0:T	yes	0	0	0	0
JSP290400:1:T	yes	1	0	-	-
JSP375286:0:T	yes	0	0	0	0
KPNE272620:2:T	yes	2396	2397	0	0
LBIF355278:2:T	yes	0	-	0	0
LBIF456481:2:T	no	0	-	0	0
LCHO395495:0:T	yes	0	0	0	0
LINT363253:3:T	yes	0	1	0	0
LPLA220668:0:T	yes	0	1	-	-
LSPH444177:1:T	yes	0	0	-	0
MACE188937:0:T	yes	1	0	1	-
MAEO419665:0:T	yes	286	0	286	286
MAQU351348:2:T	yes	0	0	0	0
MBAR269797:1:T	yes	0	1	0	1
MBUR259564:0:T	yes	1	0	1	1
MFLA265072:0:T	yes	0	0	0	0
MHUN323259:0:T	yes	1	0	-	-
MJAN243232:2:T	yes	0	694	0	0
MKAN190192:0:T	yes	1	0	1	-
MLAB410358:0:T	yes	0	1	-	-
MLOT266835:2:T	yes	0	0	0	0
MMAG342108:0:T	yes	1847	1848	0	0
MMAR267377:0:T	yes	1433	0	-	-
MMAR368407:0:T	yes	0	1	-	-
MMAR402880:1:T	yes	0	1500	-	-
MMAR426368:0:T	yes	0	360	-	-
MMAR444158:0:T	yes	325	0	-	-
MMAZ192952:0:T	yes	1	0	1	1
MPET420662:1:T	yes	0	0	0	0
MSED399549:0:T	yes	0	1	-	-
MSME246196:0:T	yes	0	-	0	0
MSP266779:3:T	yes	0	0	0	0
MSP400668:0:T	yes	0	0	0	0
MSTA339860:0:T	yes	447	0	447	-
MTHE187420:0:T	yes	175	0	-	-
MTHE264732:0:T	yes	0	1	0	0
MTHE349307:0:T	yes	1	0	-	-
NARO279238:0:T	yes	0	0	0	0
NFAR247156:2:T	yes	0	-	0	0
NMEN122586:0:T	no	0	0	0	0
NMEN122587:0:T	yes	0	0	0	0
NMEN272831:0:T	no	0	0	0	0
NMEN374833:0:T	no	0	0	0	0
NSP35761:1:T	yes	0	-	0	0
NSP387092:0:T	yes	1	0	1	1
OANT439375:5:T	yes	-	-	0	0
OCAR504832:0:T	yes	0	0	0	0
PABY272844:0:T	yes	0	1	-	-
PAER178306:0:T	yes	0	1	0	0
PAER208963:0:T	yes	0	0	0	0
PAER208964:0:T	no	0	0	0	0
PARS340102:0:T	yes	1	0	1	1
PATL342610:0:T	yes	0	0	0	0
PDIS435591:0:T	yes	0	-	0	0
PENT384676:0:T	yes	0	0	0	0
PFLU205922:0:T	yes	0	0	0	0
PFLU216595:1:T	yes	0	0	0	0
PFLU220664:0:T	yes	0	0	0	0
PFUR186497:0:T	yes	0	1	-	-
PGIN242619:0:T	yes	0	-	0	0
PHAL326442:1:T	yes	0	0	0	0
PHOR70601:0:T	yes	1	0	-	-
PING357804:0:T	yes	0	0	0	0
PINT246198:0:T	yes	1	0	-	-
PINT246198:1:T	yes	-	-	0	0
PISL384616:0:T	yes	1	0	1	1
PLUT319225:0:T	yes	0	0	0	0
PMEN399739:0:T	yes	0	0	0	0
PMOB403833:0:T	yes	0	1	0	0
PNAP365044:8:T	yes	0	0	0	0
PPRO298386:2:T	yes	0	0	0	0
PPUT160488:0:T	no	0	0	0	0
PPUT351746:0:T	yes	0	0	0	0
PPUT76869:0:T	no	0	0	0	0
PRUM264731:0:T	yes	0	-	0	0
PSP296591:2:T	yes	0	0	0	0
PSP312153:0:T	yes	0	0	0	0
PSTU379731:0:T	yes	0	0	0	0
PSYR205918:0:T	yes	0	0	0	0
PSYR223283:2:T	yes	0	0	0	0
PTHE370438:0:T	yes	1	0	1	1
RALB246199:0:T	yes	0	1528	0	0
RETL347834:5:T	yes	0	-	0	0
REUT264198:2:T	yes	0	1	-	-
REUT264198:3:T	yes	-	-	0	0
REUT381666:2:T	yes	0	0	0	0
RFER338969:1:T	yes	0	0	0	0
RLEG216596:6:T	yes	0	-	0	0
RMET266264:1:T	yes	-	0	-	-
RMET266264:2:T	yes	0	-	0	0
RPAL258594:0:T	yes	0	0	0	0
RPAL316055:0:T	yes	0	0	0	0
RPAL316056:0:T	yes	0	0	0	0
RPAL316057:0:T	yes	0	0	0	0
RPAL316058:0:T	yes	0	-	0	0
RPOM246200:1:T	yes	0	0	0	0
RRUB269796:1:T	yes	0	0	0	0
RSOL267608:1:T	yes	0	0	0	0
RSP101510:2:F	yes	0	1	-	-
RSP101510:3:F	yes	-	-	0	0
RSPH272943:3:T	yes	0	1	-	-
RSPH349101:1:T	no	0	1	-	-
RXYL266117:0:T	yes	1	0	1	1
SACI56780:0:T	yes	1	0	1	1
SALA317655:1:T	yes	0	0	0	0
SARE391037:0:T	yes	0	-	0	0
SAVE227882:1:F	yes	0	-	0	0
SBAL399599:3:T	yes	0	0	0	0
SBAL402882:1:T	no	0	0	0	0
SBOY300268:1:T	yes	1	0	1338	1338
SCO:2:F	yes	0	-	0	0
SDEG203122:0:T	yes	0	0	0	0
SDEN318161:0:T	yes	0	0	0	0
SDYS300267:1:T	yes	2236	-	0	0
SENT209261:0:T	no	1846	1847	0	0
SENT220341:0:T	no	0	1	905	905
SENT295319:0:T	no	0	1	857	857
SENT321314:2:T	no	0	1	907	907
SENT454169:2:T	no	0	1	942	942
SERY405948:0:T	yes	0	-	0	0
SFLE198214:0:T	yes	1	0	987	987
SFLE373384:0:T	no	1	0	952	952
SFUM335543:0:T	yes	0	-	0	0
SHAL458817:0:T	yes	0	0	0	0
SHIGELLA:0:T	no	1	0	293	293
SLOI323850:0:T	yes	0	0	0	0
SONE211586:1:T	yes	0	0	0	0
SPEA398579:0:T	no	0	0	0	0
SPRO399741:1:T	yes	0	-	0	0
SSED425104:0:T	yes	0	0	0	0
SSON300269:1:T	yes	1569	1568	0	0
SSP387093:0:T	yes	1	0	1	1
SSP94122:1:T	yes	0	0	0	0
STHE292459:0:T	yes	1	0	1	1
STRO369723:0:T	yes	0	-	0	0
STYP99287:1:T	yes	1876	1877	0	0
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