CANDIDATE ID: 1039

CANDIDATE ID: 1039

NUMBER OF GENES: 4
AVERAGE SCORE:    9.9883283e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages




GENE LIST:

- EG11019 (trkA) (b3290)
   Products of gene:
     - TRKA-MONOMER (NAD-binding component of TrK potassium transporter)

- EG10437 (hflX) (b4173)
   Products of gene:
     - EG10437-MONOMER (GTPase associated with the 50S subunit of the ribosome)
       Reactions:
        GTP + H2O  ->  GDP + phosphate + H+

- EG10387 (glnL) (b3869)
   Products of gene:
     - PROTEIN-NRIIP (NtrB-P)
     - PROTEIN-NRII (NtrB)
       Regulatees:
     - GLNL-CPLX (NtrB)

- EG10317 (fis) (b3261)
   Products of gene:
     - PD00196 (Fis)
       Regulatees:
        TU0-6409 (gltX)
        TU0-13407 (yeaR-yoaG)
        TU0-14739 (ogt)
        TU00205 (guaBA)
        TU00176 (dps)
        TU0-14627 (trg)
        TU0-3341 (ygjG)
        TU0-6569 (ansB)
        TU543 (rnpB)
        TU00516 (glyU)
        TU0-2504 (topA)
        TU0-8001 (glnQ)
        TU0-3721 (acs-yjcHG)
        TU0-5903 (glnA)
        TU00029 (glnALG)
        TU0-14398 (crp)
        TU0-1963 (glcC)
        TU00501 (pheV)
        TU522 (mazEFG)
        TU523 (mazEFG)
        TU0-1187 (rrsG-gltW-rrlG-rrfG)
        TU0-1143 (yfiD)
        TU00495 (valUXY-lysV)
        TU00514 (alaWX)
        TU00500 (argW)
        TU00448 (nuoABCEFGHIJKLMN)
        TU00030 (glpABC)
        TU00216 (glpTQ)
        TU00047 (nrdAB)
        TU00140 (gyrA)
        TU00494 (proL)
        TU0-7901 (mglAC)
        TU00398 (osmE)
        TU0-6507 (katE)
        TU0-1501 (flxA)
        TU0-6981 (cspI)
        TU00190 (marRAB)
        TU369 (gadBC)
        TU0-3901 (sra)
        TU0-2501 (topA)
        TU00198 (adhE)
        TU00139 (hns)
        TU00511 (tyrTV-tpr)
        TU00510 (serX)
        TU00044 (narGHJI)
        TU581 (hlyE)
        TU00158 (ndh)
        TU0-1141 (ptsG)
        TU00288 (hyaABCDEF)
        TU00061 (pyrD)
        TU00380 (pflB)
        TU00019 (dmsABC)
        TU00491 (argU)
        TU488 (hupB)
        TU0-1189 (rrsH-ileV-alaV-rrlH-rrfH)
        TU343 (metY)
        TU0-6223 (metY-yhbC-nusA-infB-rbfA-truB-rpsO-pnp)
        TU00517 (metY-yhbC-nusA-infB)
        TU0-1601 (nanATEK-yhcH)
        TU00021 (dusB-fis)
        TU0-1191 (rrsD-ileU-alaU-rrlD-rrfD-thrV-rrfF)
        TU0-14396 (crp)
        TU00119 (crp)
        TU00046 (nirBDC-cysG)
        TU586 (gadAX)
        TU00519 (proK)
        TU00374 (xylFGHR)
        TU00138 (aldB)
        TU00193 (mtlADR)
        TU0-2603 (gyrB)
        TU0-4802 (bglGFB)
        TU0-1183 (rrsC-gltU-rrlC-rrfC)
        TU00503 (argX-hisR-leuT-proM)
        TU00215 (fadBA)
        TU0-1181 (rrsA-ileT-alaT-rrlA-rrfA)
        TU00430 (trmA)
        TU0-1182 (rrsB-gltT-rrlB-rrfB)
        TU00504 (thrU-tyrU-glyT-thrT-tufB)
        TU486 (hupA)
        TU0-1186 (rrsE-gltV-rrlE-rrfE)
        TU00038 (malEFG)
        TU0-3723 (acs-yjcHG)
        TU00199 (nrfABCDEFG)
        TU0-3882 (proP)
        TU00159 (fumB)
        TU00520 (pheU)
        TU241 (msrA)
        TU00506 (leuX)
        TU00521 (leuQPV)
        TU0-1981 (osmY)
        TU00490 (thrW)
        TU0-1142 (ptsG)
        TU00507 (metT-leuW-glnUW-metU-glnVX)
        TU489 (hupB)
        TU871 (queA)
        TU00489 (aspV)
        TU796 (acnB)
        TU00523 (lpdA)
        TU00110 (carAB)
        TU0-5221 (pdxA-rsmA)
        TU0-5201 (pdxA-rsmA-apaGH)
        TU00492 (lysT-valT-lysW)
        TU00509 (serT)
        TU00045 (narK)
        TU00018 (deoCABD)
     - CPLX0-7705 (Fis DNA binding transcriptional dual regulator)
       Regulatees:
        TU0-6409 (gltX)
        TU0-13407 (yeaR-yoaG)
        TU0-14739 (ogt)
        TU00205 (guaBA)
        TU00176 (dps)
        TU0-14627 (trg)
        TU0-3341 (ygjG)
        TU0-6569 (ansB)
        TU543 (rnpB)
        TU00516 (glyU)
        TU0-2504 (topA)
        TU0-8001 (glnQ)
        TU0-3721 (acs-yjcHG)
        TU0-5903 (glnA)
        TU00029 (glnALG)
        TU0-14398 (crp)
        TU0-1963 (glcC)
        TU00501 (pheV)
        TU522 (mazEFG)
        TU523 (mazEFG)
        TU0-1187 (rrsG-gltW-rrlG-rrfG)
        TU0-1143 (yfiD)
        TU00495 (valUXY-lysV)
        TU00514 (alaWX)
        TU00500 (argW)
        TU00448 (nuoABCEFGHIJKLMN)
        TU00030 (glpABC)
        TU00216 (glpTQ)
        TU00047 (nrdAB)
        TU00140 (gyrA)
        TU00494 (proL)
        TU0-7901 (mglAC)
        TU00398 (osmE)
        TU0-6507 (katE)
        TU0-1501 (flxA)
        TU0-6981 (cspI)
        TU00190 (marRAB)
        TU369 (gadBC)
        TU0-3901 (sra)
        TU0-2501 (topA)
        TU00198 (adhE)
        TU00139 (hns)
        TU00511 (tyrTV-tpr)
        TU00510 (serX)
        TU00044 (narGHJI)
        TU581 (hlyE)
        TU00158 (ndh)
        TU0-1141 (ptsG)
        TU00288 (hyaABCDEF)
        TU00061 (pyrD)
        TU00380 (pflB)
        TU00019 (dmsABC)
        TU00491 (argU)
        TU488 (hupB)
        TU0-1189 (rrsH-ileV-alaV-rrlH-rrfH)
        TU343 (metY)
        TU0-6223 (metY-yhbC-nusA-infB-rbfA-truB-rpsO-pnp)
        TU00517 (metY-yhbC-nusA-infB)
        TU0-1601 (nanATEK-yhcH)
        TU00021 (dusB-fis)
        TU0-1191 (rrsD-ileU-alaU-rrlD-rrfD-thrV-rrfF)
        TU0-14396 (crp)
        TU00119 (crp)
        TU00046 (nirBDC-cysG)
        TU586 (gadAX)
        TU00519 (proK)
        TU00374 (xylFGHR)
        TU00138 (aldB)
        TU00193 (mtlADR)
        TU0-2603 (gyrB)
        TU0-4802 (bglGFB)
        TU0-1183 (rrsC-gltU-rrlC-rrfC)
        TU00503 (argX-hisR-leuT-proM)
        TU00215 (fadBA)
        TU0-1181 (rrsA-ileT-alaT-rrlA-rrfA)
        TU00430 (trmA)
        TU0-1182 (rrsB-gltT-rrlB-rrfB)
        TU00504 (thrU-tyrU-glyT-thrT-tufB)
        TU486 (hupA)
        TU0-1186 (rrsE-gltV-rrlE-rrfE)
        TU00038 (malEFG)
        TU0-3723 (acs-yjcHG)
        TU00199 (nrfABCDEFG)
        TU0-3882 (proP)
        TU00159 (fumB)
        TU00520 (pheU)
        TU241 (msrA)
        TU00506 (leuX)
        TU00521 (leuQPV)
        TU0-1981 (osmY)
        TU00490 (thrW)
        TU0-1142 (ptsG)
        TU00507 (metT-leuW-glnUW-metU-glnVX)
        TU489 (hupB)
        TU871 (queA)
        TU00489 (aspV)
        TU796 (acnB)
        TU00523 (lpdA)
        TU00110 (carAB)
        TU0-5221 (pdxA-rsmA)
        TU0-5201 (pdxA-rsmA-apaGH)
        TU00492 (lysT-valT-lysW)
        TU00509 (serT)
        TU00045 (narK)
        TU00018 (deoCABD)



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ORGANISMS CONTAINING AT LEAST 3 GENES FROM THE GROUP:

Total number of orgs: 232
Effective number of orgs (counting one per cluster within 468 clusters): 169

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317584
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329534
YPES386656 ncbi Yersinia pestis Pestoides F4
YPES377628 ncbi Yersinia pestis Nepal5164
YPES360102 ncbi Yersinia pestis Antiqua4
YPES349746 ncbi Yersinia pestis Angola4
YPES214092 ncbi Yersinia pestis CO924
YPES187410 ncbi Yersinia pestis KIM 104
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80814
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A3
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110183
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103313
XFAS405440 ncbi Xylella fastidiosa M123
XFAS183190 ncbi Xylella fastidiosa Temecula13
XFAS160492 ncbi Xylella fastidiosa 9a5c3
XCAM487884 Xanthomonas campestris pv. paulliniae3
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-103
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80043
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339133
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3063
XAUT78245 ncbi Xanthobacter autotrophicus Py24
VVUL216895 ncbi Vibrio vulnificus CMCP64
VVUL196600 ncbi Vibrio vulnificus YJ0164
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106334
VFIS312309 ncbi Vibrio fischeri ES1144
VEIS391735 ncbi Verminephrobacter eiseniae EF01-23
VCHO345073 ncbi Vibrio cholerae O3954
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169614
TTUR377629 ncbi Teredinibacter turnerae T79014
TROS309801 ncbi Thermomicrobium roseum DSM 51593
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252594
TCRU317025 ncbi Thiomicrospira crunogena XCL-24
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT24
SSP94122 ncbi Shewanella sp. ANA-34
SSP644076 Silicibacter sp. TrichCH4B4
SSP292414 ncbi Ruegeria sp. TM10404
SSON300269 ncbi Shigella sonnei Ss0464
SSED425104 ncbi Shewanella sediminis HAW-EB34
SPRO399741 ncbi Serratia proteamaculans 5684
SPEA398579 ncbi Shewanella pealeana ATCC 7003454
SONE211586 ncbi Shewanella oneidensis MR-14
SMEL266834 ncbi Sinorhizobium meliloti 10214
SMED366394 ncbi Sinorhizobium medicae WSM4194
SLOI323850 ncbi Shewanella loihica PV-44
SLAC55218 Ruegeria lacuscaerulensis4
SHIGELLA ncbi Shigella flexneri 2a str. 2457T4
SHAL458817 ncbi Shewanella halifaxensis HAW-EB44
SGLO343509 ncbi Sodalis glossinidius morsitans4
SFLE373384 ncbi Shigella flexneri 5 str. 84014
SFLE198214 ncbi Shigella flexneri 2a str. 3014
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4764
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B674
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91504
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT184
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty24
SDYS300267 ncbi Shigella dysenteriae Sd1974
SDEN318161 ncbi Shewanella denitrificans OS2174
SDEG203122 ncbi Saccharophagus degradans 2-404
SBOY300268 ncbi Shigella boydii Sb2274
SBAL402882 ncbi Shewanella baltica OS1854
SBAL399599 ncbi Shewanella baltica OS1954
SACI56780 ncbi Syntrophus aciditrophicus SB3
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170254
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170294
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.14
RSP357808 ncbi Roseiflexus sp. RS-13
RSOL267608 ncbi Ralstonia solanacearum GMI10003
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111704
RPOM246200 ncbi Ruegeria pomeroyi DSS-34
RPAL316058 ncbi Rhodopseudomonas palustris HaA23
RPAL316057 ncbi Rhodopseudomonas palustris BisB53
RPAL316056 ncbi Rhodopseudomonas palustris BisB183
RPAL316055 ncbi Rhodopseudomonas palustris BisA533
RPAL258594 ncbi Rhodopseudomonas palustris CGA0093
RMET266264 ncbi Ralstonia metallidurans CH343
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38413
RFER338969 ncbi Rhodoferax ferrireducens T1183
REUT381666 ncbi Ralstonia eutropha H163
REUT264198 ncbi Ralstonia eutropha JMP1343
RETL347834 ncbi Rhizobium etli CFN 423
RDEN375451 ncbi Roseobacter denitrificans OCh 1144
RCAS383372 ncbi Roseiflexus castenholzii DSM 139413
PTHE370438 ncbi Pelotomaculum thermopropionicum SI3
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30004
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a4
PSTU379731 ncbi Pseudomonas stutzeri A15014
PSP56811 Psychrobacter sp.3
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-13
PSP296591 ncbi Polaromonas sp. JS6663
PSP117 Pirellula sp.3
PPUT76869 ncbi Pseudomonas putida GB-14
PPUT351746 ncbi Pseudomonas putida F14
PPUT160488 ncbi Pseudomonas putida KT24404
PPRO298386 ncbi Photobacterium profundum SS94
PNAP365044 ncbi Polaromonas naphthalenivorans CJ23
PMUL272843 ncbi Pasteurella multocida multocida Pm703
PMEN399739 ncbi Pseudomonas mendocina ymp4
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO14
PING357804 ncbi Psychromonas ingrahamii 374
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1254
PFLU220664 ncbi Pseudomonas fluorescens Pf-54
PFLU216595 ncbi Pseudomonas fluorescens SBW254
PFLU205922 ncbi Pseudomonas fluorescens Pf0-14
PENT384676 ncbi Pseudomonas entomophila L484
PCRY335284 ncbi Psychrobacter cryohalolentis K53
PCAR338963 ncbi Pelobacter carbinolicus DSM 23803
PATL342610 ncbi Pseudoalteromonas atlantica T6c4
PAER208964 ncbi Pseudomonas aeruginosa PAO14
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA144
OCAR504832 ncbi Oligotropha carboxidovorans OM53
OANT439375 ncbi Ochrobactrum anthropi ATCC 491884
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2553
NOCE323261 ncbi Nitrosococcus oceani ATCC 197073
NMEN374833 ncbi Neisseria meningitidis 0534423
NMEN272831 ncbi Neisseria meningitidis FAM183
NMEN122587 ncbi Neisseria meningitidis Z24913
NMEN122586 ncbi Neisseria meningitidis MC583
NHAM323097 ncbi Nitrobacter hamburgensis X143
NGON242231 ncbi Neisseria gonorrhoeae FA 10903
NEUT335283 ncbi Nitrosomonas eutropha C913
NEUR228410 ncbi Nitrosomonas europaea ATCC 197183
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124443
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E3
MSP409 Methylobacterium sp.3
MSP400668 ncbi Marinomonas sp. MWYL14
MSP266779 ncbi Chelativorans sp. BNC14
MMAR394221 ncbi Maricaulis maris MCS103
MMAG342108 ncbi Magnetospirillum magneticum AMB-14
MLOT266835 ncbi Mesorhizobium loti MAFF3030993
MFLA265072 ncbi Methylobacillus flagellatus KT3
MEXT419610 ncbi Methylobacterium extorquens PA13
MCAP243233 ncbi Methylococcus capsulatus Bath4
MAQU351348 ncbi Marinobacter aquaeolei VT84
LCHO395495 ncbi Leptothrix cholodnii SP-64
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785784
JSP375286 ncbi Janthinobacterium sp. Marseille3
JSP290400 ncbi Jannaschia sp. CCS14
ILOI283942 ncbi Idiomarina loihiensis L2TR4
HSOM228400 ncbi Haemophilus somnus 23363
HSOM205914 ncbi Haemophilus somnus 129PT3
HNEP81032 Hyphomonas neptunium3
HHAL349124 ncbi Halorhodospira halophila SL13
HDUC233412 ncbi Haemophilus ducreyi 35000HP3
HCHE349521 ncbi Hahella chejuensis KCTC 23964
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237793
HARS204773 ncbi Herminiimonas arsenicoxydans3
GURA351605 ncbi Geobacter uraniireducens Rf43
GSUL243231 ncbi Geobacter sulfurreducens PCA3
GMET269799 ncbi Geobacter metallireducens GS-153
GBET391165 ncbi Granulibacter bethesdensis CGDNIH13
ESP42895 Enterobacter sp.4
ELIT314225 ncbi Erythrobacter litoralis HTCC25943
EFER585054 ncbi Escherichia fergusonii ATCC 354694
ECOO157 ncbi Escherichia coli O157:H7 EDL9334
ECOL83334 Escherichia coli O157:H74
ECOL585397 ncbi Escherichia coli ED1a4
ECOL585057 ncbi Escherichia coli IAI394
ECOL585056 ncbi Escherichia coli UMN0264
ECOL585055 ncbi Escherichia coli 559894
ECOL585035 ncbi Escherichia coli S884
ECOL585034 ncbi Escherichia coli IAI14
ECOL481805 ncbi Escherichia coli ATCC 87394
ECOL469008 ncbi Escherichia coli BL21(DE3)4
ECOL439855 ncbi Escherichia coli SMS-3-54
ECOL413997 ncbi Escherichia coli B str. REL6064
ECOL409438 ncbi Escherichia coli SE114
ECOL405955 ncbi Escherichia coli APEC O14
ECOL364106 ncbi Escherichia coli UTI894
ECOL362663 ncbi Escherichia coli 5364
ECOL331111 ncbi Escherichia coli E24377A4
ECOL316407 ncbi Escherichia coli K-12 substr. W31104
ECOL199310 ncbi Escherichia coli CFT0734
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10434
DSP255470 ncbi Dehalococcoides sp. CBDB13
DSHI398580 ncbi Dinoroseobacter shibae DFL 124
DRED349161 ncbi Desulfotomaculum reducens MI-13
DPSY177439 ncbi Desulfotalea psychrophila LSv543
DETH243164 ncbi Dehalococcoides ethenogenes 1953
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G203
DARO159087 ncbi Dechloromonas aromatica RCB3
CVIO243365 ncbi Chromobacterium violaceum ATCC 124723
CSP78 Caulobacter sp.3
CSP501479 Citreicella sp. SE454
CSAL290398 ncbi Chromohalobacter salexigens DSM 30434
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)3
CPSY167879 ncbi Colwellia psychrerythraea 34H4
CJAP155077 Cellvibrio japonicus4
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C3
CAULO ncbi Caulobacter crescentus CB153
BVIE269482 ncbi Burkholderia vietnamiensis G43
BTHA271848 ncbi Burkholderia thailandensis E2643
BSUI204722 ncbi Brucella suis 13304
BSP376 Bradyrhizobium sp.3
BSP36773 Burkholderia sp.3
BPSE320373 ncbi Burkholderia pseudomallei 6683
BPSE320372 ncbi Burkholderia pseudomallei 1710b3
BPSE272560 ncbi Burkholderia pseudomallei K962433
BPET94624 Bordetella petrii4
BPER257313 ncbi Bordetella pertussis Tohama I4
BPAR257311 ncbi Bordetella parapertussis 128224
BOVI236 Brucella ovis4
BMEL359391 ncbi Brucella melitensis biovar Abortus 23084
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M4
BMAL320389 ncbi Burkholderia mallei NCTC 102473
BMAL320388 ncbi Burkholderia mallei SAVP13
BMAL243160 ncbi Burkholderia mallei ATCC 233443
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1103
BCEN331272 ncbi Burkholderia cenocepacia HI24243
BCAN483179 ncbi Brucella canis ATCC 233654
BBRO257310 ncbi Bordetella bronchiseptica RB504
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1003
BAMB398577 ncbi Burkholderia ambifaria MC40-63
BAMB339670 ncbi Burkholderia ambifaria AMMD3
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9414
AVAR240292 ncbi Anabaena variabilis ATCC 294133
ASP76114 ncbi Aromatoleum aromaticum EbN13
ASP62977 ncbi Acinetobacter sp. ADP13
ASP62928 ncbi Azoarcus sp. BH724
ASP232721 ncbi Acidovorax sp. JS424
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4494
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL033
APLE416269 ncbi Actinobacillus pleuropneumoniae L203
AORE350688 ncbi Alkaliphilus oremlandii OhILAs3
AHYD196024 Aeromonas hydrophila dhakensis4
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232703
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-14
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C3
ACRY349163 ncbi Acidiphilium cryptum JF-53
ACAU438753 ncbi Azorhizobium caulinodans ORS 5714
ABOR393595 ncbi Alcanivorax borkumensis SK24
ABAU360910 ncbi Bordetella avium 197N4
AAVE397945 ncbi Acidovorax citrulli AAC00-14


Names of the homologs of the genes in the group in each of these orgs
  EG11019   EG10437   EG10387   EG10317   
YPSE349747 YPSIP31758_3885YPSIP31758_3652YPSIP31758_0026YPSIP31758_0385
YPSE273123 YPTB3668YPTB0426YPTB0023YPTB3577
YPES386656 YPDSF_0161YPDSF_3600YPDSF_3881YPDSF_0260
YPES377628 YPN_3830YPN_3297YPN_0250YPN_3518
YPES360102 YPA_3234YPA_3910YPA_3519YPA_3666
YPES349746 YPANGOLA_A0612YPANGOLA_A0698YPANGOLA_A0028YPANGOLA_A1212
YPES214092 YPO0239YPO0374YPO0023YPO3654
YPES187410 Y4020Y0632Y3805Y0214
YENT393305 YE3892YE0378YE0026YE3817
XORY360094 XOOORF_1722XOOORF_0296XOOORF_4798
XORY342109 XOO2797XOO4225XOO0512
XORY291331 XOO2945XOO4484XOO0548
XFAS405440 XFASM12_0069XFASM12_1118XFASM12_0976
XFAS183190 PD_0065PD_1020PD_0811
XFAS160492 XF0088XF1849XF1998
XCAM487884 XCC-B100_2542XCC-B100_0208XCC-B100_0538
XCAM316273 XCAORF_1953XCAORF_4341XCAORF_3999
XCAM314565 XC_2514XC_0197XC_0520
XCAM190485 XCC1717XCC0188XCC0508
XAXO190486 XAC1736XAC0207XAC0522
XAUT78245 XAUT_4396XAUT_4392XAUT_4400XAUT_4399
VVUL216895 VV1_1045VV1_1295VV1_0891VV1_1231
VVUL196600 VV3228VV3070VV0197VV3139
VPAR223926 VP3045VP2816VP0119VP2885
VFIS312309 VF2546VF2322VF0096VF2391
VEIS391735 VEIS_0074VEIS_3152VEIS_3026
VCHO345073 VC0395_A2476VC0395_A2759VC0395_A2320VC0395_A2685
VCHO VC0043VC0348VC2748VC0290
TTUR377629 TERTU_0034TERTU_3557TERTU_4423TERTU_3085
TROS309801 TRD_1478TRD_0861TRD_1599
TDEN292415 TBD_0020TBD_0602TBD_2501TBD_2457
TCRU317025 TCR_0187TCR_1087TCR_0905TCR_0440
STYP99287 STM3409STM4362STM4006STM3385
SSP94122 SHEWANA3_0032SHEWANA3_0598SHEWANA3_0259SHEWANA3_0398
SSP644076 SCH4B_2285SCH4B_2288SCH4B_2281SCH4B_2282
SSP292414 TM1040_1358TM1040_1355TM1040_1362TM1040_1361
SSON300269 SSO_3430SSO_4358SSO_4041SSO_3402
SSED425104 SSED_0032SSED_0798SSED_0283SSED_4119
SPRO399741 SPRO_4514SPRO_0432SPRO_4882SPRO_4424
SPEA398579 SPEA_0028SPEA_3539SPEA_3929SPEA_0389
SONE211586 SO_0029SO_0604SO_4471SO_0393
SMEL266834 SMC01046SMC01049SMC01042SMC01043
SMED366394 SMED_1093SMED_1096SMED_1089SMED_1090
SLOI323850 SHEW_3739SHEW_0567SHEW_3560SHEW_0329
SLAC55218 SL1157_2688SL1157_2691SL1157_2683SL1157_2684
SHIGELLA TRKAHFLXGLNLFIS
SHAL458817 SHAL_0024SHAL_3633SHAL_0342SHAL_3902
SGLO343509 SG2249SG0338SG2231SG0150
SFLE373384 SFV_3309SFV_4331SFV_3632SFV_3286
SFLE198214 AAN44784.1AAN45745.1AAN45374.1AAN44763.1
SENT454169 SEHA_C3713SEHA_C4780SEHA_C4334SEHA_C3683
SENT321314 SCH_3345SCH_4238SCH_3898SCH_3323
SENT295319 SPA3276SPA4179SPA3847SPA3252
SENT220341 STY4388STY4719STY3875STY3565
SENT209261 T4095T4413T3615T3300
SDYS300267 SDY_3466SDY_4416SDY_3874SDY_3438
SDEN318161 SDEN_0021SDEN_3204SDEN_3457SDEN_0444
SDEG203122 SDE_0018SDE_2666SDE_0500SDE_0807
SBOY300268 SBO_3283SBO_4283SBO_3881SBO_3255
SBAL402882 SHEW185_0024SHEW185_3766SHEW185_0259SHEW185_3965
SBAL399599 SBAL195_0028SBAL195_3892SBAL195_0267SBAL195_4081
SACI56780 SYN_02618SYN_01762SYN_02215
RSPH349102 RSPH17025_1491RSPH17025_1494RSPH17025_1487RSPH17025_1488
RSPH349101 RSPH17029_1453RSPH17029_1450RSPH17029_1457RSPH17029_1456
RSPH272943 RSP_2841RSP_2844RSP_2837RSP_2838
RSP357808 ROSERS_2407ROSERS_2334ROSERS_3026
RSOL267608 RSC1221RSC1260RSC0505
RRUB269796 RRU_A1681RRU_A1685RRU_A1677RRU_A1678
RPOM246200 SPO_2083SPO_2080SPO_2088SPO_2087
RPAL316058 RPB_2877RPB_2883RPB_2882
RPAL316057 RPD_2595RPD_2589RPD_2590
RPAL316056 RPC_2583RPC_2577RPC_2578
RPAL316055 RPE_2763RPE_2757RPE_2758
RPAL258594 RPA2598RPA2592RPA2593
RMET266264 RMET_2100RMET_2060RMET_0428
RLEG216596 RL2285RL2256RL2257
RFER338969 RFER_2301RFER_2981RFER_1581
REUT381666 H16_A2358H16_A2333H16_A0502
REUT264198 REUT_A2080REUT_A2055REUT_A0488
RETL347834 RHE_CH01955RHE_CH01947RHE_CH01948
RDEN375451 RD1_2757RD1_2754RD1_2764RD1_2763
RCAS383372 RCAS_2661RCAS_3144RCAS_2148
PTHE370438 PTH_2120PTH_1422PTH_0508
PSYR223283 PSPTO_0180PSPTO_4941PSPTO_0353PSPTO_4865
PSYR205918 PSYR_0016PSYR_0573PSYR_4821PSYR_4405
PSTU379731 PST_0018PST_3667PST_0350PST_3278
PSP56811 PSYCPRWF_1868PSYCPRWF_1804PSYCPRWF_1623
PSP312153 PNUC_1285PNUC_1254PNUC_1876
PSP296591 BPRO_2602BPRO_1809BPRO_1131
PSP117 RB8035RB7008RB11947
PPUT76869 PPUTGB1_0081PPUTGB1_4945PPUTGB1_5100PPUTGB1_4874
PPUT351746 PPUT_0081PPUT_4769PPUT_4922PPUT_4696
PPUT160488 PP_0065PP_4893PP_5047PP_4821
PPRO298386 PBPRA3582PBPRA3349PBPRA3494PBPRA3411
PNAP365044 PNAP_1878PNAP_2778PNAP_3359
PMUL272843 PM1563PM0907PM1086
PMEN399739 PMEN_0052PMEN_0636PMEN_4143PMEN_0709
PLUM243265 PLU4698PLU4580PLU0236PLU4089
PING357804 PING_0081PING_3237PING_3487PING_3216
PHAL326442 PSHAA0020PSHAA0272PSHAA0164PSHAA0346
PFLU220664 PFL_0019PFL_0567PFL_0378PFL_0667
PFLU216595 PFLU0015PFLU0521PFLU0344PFLU0613
PFLU205922 PFL_0014PFL_0524PFL_0340PFL_0614
PENT384676 PSEEN0022PSEEN4942PSEEN0387PSEEN4862
PCRY335284 PCRYO_0396PCRYO_1716PCRYO_1650
PCAR338963 PCAR_2043PCAR_1993PCAR_1994
PATL342610 PATL_0020PATL_3979PATL_1027PATL_0269
PAER208964 PA0016PA4943PA5124PA4853
PAER208963 PA14_00170PA14_65300PA14_67670PA14_64190
OCAR504832 OCAR_6101OCAR_6095OCAR_6096
OANT439375 OANT_2209OANT_2207OANT_2071OANT_2072
NWIN323098 NWI_1450NWI_1444NWI_1445
NOCE323261 NOC_3020NOC_2589NOC_1049
NMEN374833 NMCC_1520NMCC_1154NMCC_1326
NMEN272831 NMC1535NMC1171NMC1353
NMEN122587 NMA1813NMA1445NMA1632
NMEN122586 NMB_1614NMB_1041NMB_1420
NHAM323097 NHAM_1842NHAM_1836NHAM_1837
NGON242231 NGO1154NGO0684NGO0152
NEUT335283 NEUT_1132NEUT_0962NEUT_1209
NEUR228410 NE1834NE1286NE0875
NARO279238 SARO_1932SARO_1927SARO_1928
MSUC221988 MS2195MS1519MS0531
MSP409 M446_5943M446_5929M446_5930
MSP400668 MMWYL1_0014MMWYL1_2631MMWYL1_0735MMWYL1_2986
MSP266779 MESO_1615MESO_1612MESO_1619MESO_1618
MMAR394221 MMAR10_1445MMAR10_1449MMAR10_1441
MMAG342108 AMB2370AMB2373AMB2366AMB2367
MLOT266835 MLR0403MLR0397MLR0398
MFLA265072 MFLA_1588MFLA_2449MFLA_0350
MEXT419610 MEXT_2825MEXT_2819MEXT_2820
MCAP243233 MCA_2849MCA_1982MCA_2542MCA_1746
MAQU351348 MAQU_0040MAQU_2768MAQU_0767MAQU_3449
LCHO395495 LCHO_4070LCHO_2862LCHO_3583LCHO_0533
KPNE272620 GKPORF_B3030GKPORF_B3929GKPORF_B3518GKPORF_B3009
JSP375286 MMA_2121MMA_1080MMA_0307
JSP290400 JANN_2242JANN_2245JANN_2237JANN_2238
ILOI283942 IL0015IL0334IL2436IL2289
HSOM228400 HSM_1931HSM_1075HSM_1610
HSOM205914 HS_0038HS_1104HS_0564
HNEP81032 HNE_2008HNE_2005HNE_2012
HHAL349124 HHAL_0665HHAL_1216HHAL_2001
HDUC233412 HD_1991HD_0740HD_0449
HCHE349521 HCH_00027HCH_05382HCH_01034HCH_06010
HAUR316274 HAUR_3335HAUR_2926HAUR_4259
HARS204773 HEAR1271HEAR0950HEAR0254
GURA351605 GURA_0905GURA_0915GURA_0916
GSUL243231 GSU_1009GSU_1004GSU_1003
GMET269799 GMET_2557GMET_2562GMET_2563
GBET391165 GBCGDNIH1_1124GBCGDNIH1_1227GBCGDNIH1_1226
ESP42895 ENT638_3721ENT638_0356ENT638_4097ENT638_3700
ELIT314225 ELI_06255ELI_06280ELI_06275
EFER585054 EFER_3273EFER_4226EFER_3904EFER_3240
ECOO157 TRKAHFLXGLNLFIS
ECOL83334 ECS4155ECS5149ECS4791ECS4133
ECOL585397 ECED1_3953ECED1_4958ECED1_4570ECED1_3920
ECOL585057 ECIAI39_3784ECIAI39_4638ECIAI39_3132ECIAI39_3761
ECOL585056 ECUMN_3763ECUMN_4706ECUMN_4392ECUMN_3735
ECOL585055 EC55989_3706EC55989_4728EC55989_4344EC55989_3675
ECOL585035 ECS88_3677ECS88_4759ECS88_4319ECS88_3646
ECOL585034 ECIAI1_3439ECIAI1_4406ECIAI1_4068ECIAI1_3404
ECOL481805 ECOLC_0424ECOLC_3840ECOLC_4147ECOLC_0445
ECOL469008 ECBD_0462ECBD_3861ECBD_4158ECBD_0484
ECOL439855 ECSMS35_3585ECSMS35_4644ECSMS35_4254ECSMS35_3556
ECOL413997 ECB_03140ECB_04040ECB_03754ECB_03119
ECOL409438 ECSE_3564ECSE_4470ECSE_4152ECSE_3542
ECOL405955 APECO1_3157APECO1_2218APECO1_2593APECO1_3177
ECOL364106 UTI89_C3734UTI89_C4773UTI89_C4458UTI89_C3703
ECOL362663 ECP_3377ECP_4418ECP_4080ECP_3354
ECOL331111 ECE24377A_3772ECE24377A_4731ECE24377A_4391ECE24377A_3746
ECOL316407 ECK3276:JW3251:B3290ECK4169:JW4131:B4173ECK3862:JW3840:B3869ECK3248:JW3229:B3261
ECOL199310 C4050C5257C4818C4027
ECAR218491 ECA4002ECA3933ECA0028ECA0255
DSP255470 CBDBA37CBDBA691CBDBA1591
DSHI398580 DSHI_1569DSHI_1566DSHI_1575DSHI_1574
DRED349161 DRED_2911DRED_1259DRED_2000
DPSY177439 DP0724DP2918DP2891
DETH243164 DET_0030DET_0737DET_0127
DDES207559 DDE_2030DDE_0376DDE_0110
DARO159087 DARO_2979DARO_3759DARO_3666
CVIO243365 CV_3532CV_3591CV_0545
CSP78 CAUL_2611CAUL_2605CAUL_2606
CSP501479 CSE45_1385CSE45_1388CSE45_1380CSE45_1381
CSAL290398 CSAL_2872CSAL_1278CSAL_0245CSAL_2288
CRUT413404 RMAG_0363RMAG_0207RMAG_0968
CPSY167879 CPS_0017CPS_0326CPS_0398CPS_0551
CJAP155077 CJA_3579CJA_3078CJA_3536CJA_2746
CDES477974 DAUD_0266DAUD_1110DAUD_0675
CAULO CC1746CC1740CC1741
BVIE269482 BCEP1808_1733BCEP1808_2227BCEP1808_0657
BTHA271848 BTH_I2240BTH_I1845BTH_I1251
BSUI204722 BR_1114BR_1110BR_1118BR_1117
BSP376 BRADO3854BRADO3867BRADO3866
BSP36773 BCEP18194_A5107BCEP18194_A5457BCEP18194_A3778
BPSE320373 BURPS668_2183BURPS668_2633BURPS668_3361
BPSE320372 BURPS1710B_A2550BURPS1710B_A3000BURPS1710B_A3678
BPSE272560 BPSL1519BPSL2317BPSL2895
BPET94624 BPET4707BPET2026BPET2275BPET0907
BPER257313 BP0573BP2192BP1597BP3415
BPAR257311 BPP0263BPP2848BPP2987BPP3565
BOVI236 GBOORF1114GBOORF1111GBOORF1118GBOORF1117
BMEL359391 BAB1_1137BAB1_1133BAB1_1141BAB1_1140
BMEL224914 BMEI0869BMEI0873BMEI0865BMEI0866
BMAL320389 BMA10247_1100BMA10247_1523BMA10247_2537
BMAL320388 BMASAVP1_A1828BMASAVP1_A2251BMASAVP1_A0271
BMAL243160 BMA_1339BMA_1741BMA_2357
BJAP224911 BLR4492BLR4487BLR4488
BCEN331272 BCEN2424_1806BCEN2424_2148BCEN2424_0692
BCAN483179 BCAN_A1133BCAN_A1129BCAN_A1137BCAN_A1136
BBRO257310 BB0266BB3169BB2953BB4000
BBAC264462 BD1831BD3036BD0039
BAMB398577 BAMMC406_1717BAMMC406_2058BAMMC406_0611
BAMB339670 BAMB_1744BAMB_2185BAMB_0585
BABO262698 BRUAB1_1120BRUAB1_1116BRUAB1_1124BRUAB1_1123
AVAR240292 AVA_1067AVA_1834AVA_1343
ASP76114 EBA2825EBA1254EBA4117
ASP62977 ACIAD3005ACIAD1369ACIAD2446
ASP62928 AZO3981AZO0933AZO0736AZO2893
ASP232721 AJS_3912AJS_1176AJS_1191AJS_3585
ASAL382245 ASA_4143ASA_3368ASA_4122ASA_0807
APLE434271 APJL_1587APJL_2009APJL_0191
APLE416269 APL_1559APL_1962APL_0190
AORE350688 CLOS_0673CLOS_1786CLOS_1078
AHYD196024 AHA_0255AHA_0925AHA_0275AHA_3511
AFER243159 AFE_1201AFE_0207AFE_2834
AEHR187272 MLG_2622MLG_0574MLG_0015MLG_0610
ADEH290397 ADEH_0203ADEH_1907ADEH_3791
ACRY349163 ACRY_1761ACRY_2033ACRY_2034
ACAU438753 AZC_3082AZC_3079AZC_3087AZC_3086
ABOR393595 ABO_0128ABO_2202ABO_2260ABO_2014
ABAU360910 BAV0232BAV2337BAV1930BAV2775
AAVE397945 AAVE_4544AAVE_1430AAVE_1444AAVE_0895


Organism features enriched in list (features available for 215 out of the 232 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00005471892
Disease:Bubonic_plague 0.002405866
Disease:Dysentery 0.002405866
Disease:Gastroenteritis 0.00307121013
Endospores:No 3.661e-1142211
Endospores:Yes 3.435e-7453
GC_Content_Range4:0-40 1.250e-447213
GC_Content_Range4:40-60 9.211e-11119224
GC_Content_Range4:60-100 2.455e-1289145
GC_Content_Range7:30-40 4.902e-307166
GC_Content_Range7:50-60 4.274e-1474107
GC_Content_Range7:60-70 6.991e-1588134
Genome_Size_Range5:0-2 3.630e-314155
Genome_Size_Range5:2-4 0.000716456197
Genome_Size_Range5:4-6 8.060e-26125184
Genome_Size_Range5:6-10 0.00006123047
Genome_Size_Range9:1-2 6.879e-244128
Genome_Size_Range9:2-3 0.000078527120
Genome_Size_Range9:4-5 2.722e-106396
Genome_Size_Range9:5-6 2.988e-126288
Genome_Size_Range9:6-8 1.696e-62838
Gram_Stain:Gram_Neg 1.818e-36192333
Gram_Stain:Gram_Pos 2.535e-285150
Habitat:Host-associated 0.004712663206
Habitat:Multiple 0.000030687178
Habitat:Specialized 0.00410501153
Motility:No 7.090e-1617151
Motility:Yes 8.621e-15143267
Optimal_temp.:25-30 2.061e-61719
Optimal_temp.:35-37 0.00046921113
Optimal_temp.:37 0.001135026106
Oxygen_Req:Anaerobic 5.199e-815102
Oxygen_Req:Facultative 3.418e-699201
Pathogenic_in:Plant 0.00338171115
Shape:Coccus 3.453e-71182
Shape:Rod 1.088e-16174347
Shape:Sphere 0.0085774219
Shape:Spiral 0.0006684434
Temp._range:Psychrophilic 0.001812689
Temp._range:Thermophilic 0.0017983535



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 276
Effective number of orgs (counting one per cluster within 468 clusters): 221

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
WSUC273121 ncbi Wolinella succinogenes DSM 17400
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I1
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTHE300852 ncbi Thermus thermophilus HB81
TTHE262724 ncbi Thermus thermophilus HB271
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB41
TSP1755 Thermoanaerobacter sp.1
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332231
TPEN368408 ncbi Thermofilum pendens Hrk 51
TPAL243276 ncbi Treponema pallidum pallidum Nichols1
TLET416591 ncbi Thermotoga lettingae TMO1
TKOD69014 ncbi Thermococcus kodakarensis KOD11
TERY203124 ncbi Trichodesmium erythraeum IMS1011
TELO197221 ncbi Thermosynechococcus elongatus BP-10
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12510
TDEN243275 ncbi Treponema denticola ATCC 354051
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen1
STOK273063 ncbi Sulfolobus tokodaii 70
STHE292459 ncbi Symbiobacterium thermophilum IAM 148631
SSUI391296 ncbi Streptococcus suis 98HAH331
SSUI391295 ncbi Streptococcus suis 05ZYH331
SSP84588 ncbi Synechococcus sp. WH 81020
SSP64471 ncbi Synechococcus sp. CC93110
SSP387093 ncbi Sulfurovum sp. NBC37-11
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)1
SSP321327 ncbi Synechococcus sp. JA-3-3Ab1
SSP1131 Synechococcus sp. CC96050
SSOL273057 ncbi Sulfolobus solfataricus P20
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153051
SPYO370554 ncbi Streptococcus pyogenes MGAS107501
SPYO370553 ncbi Streptococcus pyogenes MGAS20961
SPYO370552 ncbi Streptococcus pyogenes MGAS102701
SPYO370551 ncbi Streptococcus pyogenes MGAS94291
SPYO319701 ncbi Streptococcus pyogenes MGAS61801
SPYO293653 ncbi Streptococcus pyogenes MGAS50051
SPYO286636 ncbi Streptococcus pyogenes MGAS103941
SPYO198466 ncbi Streptococcus pyogenes MGAS3151
SPYO193567 ncbi Streptococcus pyogenes SSI-11
SPYO186103 ncbi Streptococcus pyogenes MGAS82321
SPYO160490 ncbi Streptococcus pyogenes M1 GAS1
SMAR399550 ncbi Staphylothermus marinus F11
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14350
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122281
SEPI176279 ncbi Staphylococcus epidermidis RP62A1
SAUR93062 ncbi Staphylococcus aureus aureus COL0
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83251
SAUR426430 ncbi Staphylococcus aureus aureus Newman0
SAUR418127 ncbi Staphylococcus aureus aureus Mu30
SAUR367830 Staphylococcus aureus aureus USA3000
SAUR359787 ncbi Staphylococcus aureus aureus JH10
SAUR359786 ncbi Staphylococcus aureus aureus JH90
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4760
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2520
SAUR273036 ncbi Staphylococcus aureus RF1221
SAUR196620 ncbi Staphylococcus aureus aureus MW21
SAUR158879 ncbi Staphylococcus aureus aureus N3151
SAUR158878 ncbi Staphylococcus aureus aureus Mu501
SALA317655 ncbi Sphingopyxis alaskensis RB22561
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99411
RTYP257363 ncbi Rickettsia typhi Wilmington0
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RMAS416276 ncbi Rickettsia massiliae MTU50
RFEL315456 ncbi Rickettsia felis URRWXCal20
RCON272944 ncbi Rickettsia conorii Malish 70
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RALB246199 Ruminococcus albus 80
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97900
PRUM264731 ncbi Prevotella ruminicola 231
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257450
PMOB403833 ncbi Petrotoga mobilis SJ950
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74547 ncbi Prochlorococcus marinus MIT 93130
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR59920 ncbi Prochlorococcus marinus NATL2A0
PMAR167555 ncbi Prochlorococcus marinus NATL1A0
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13750
PMAR146891 ncbi Prochlorococcus marinus AS96010
PLUT319225 ncbi Chlorobium luteolum DSM 2731
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 171
PHOR70601 ncbi Pyrococcus horikoshii OT31
PFUR186497 ncbi Pyrococcus furiosus DSM 36381
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PAER178306 ncbi Pyrobaculum aerophilum IM20
PABY272844 ncbi Pyrococcus abyssi GE51
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
NSP387092 ncbi Nitratiruptor sp. SB155-21
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21601
MTHE349307 ncbi Methanosaeta thermophila PT1
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H1
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30911
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go11
MMAR444158 ncbi Methanococcus maripaludis C61
MMAR426368 ncbi Methanococcus maripaludis C71
MMAR402880 ncbi Methanococcus maripaludis C51
MMAR368407 ncbi Methanoculleus marisnigri JR11
MMAR267377 ncbi Methanococcus maripaludis S21
MLEP272631 ncbi Mycobacterium leprae TN1
MLAB410358 ncbi Methanocorpusculum labreanum Z1
MKAN190192 ncbi Methanopyrus kandleri AV191
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26611
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-11
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBUR259564 ncbi Methanococcoides burtonii DSM 62421
MBAR269797 ncbi Methanosarcina barkeri Fusaro1
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAER449447 ncbi Microcystis aeruginosa NIES-8431
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A1
LXYL281090 ncbi Leifsonia xyli xyli CTCB071
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53340
LSPH444177 ncbi Lysinibacillus sphaericus C3-411
LSAK314315 ncbi Lactobacillus sakei sakei 23K0
LREU557436 ncbi Lactobacillus reuteri DSM 200160
LPLA220668 ncbi Lactobacillus plantarum WCFS10
LMON265669 ncbi Listeria monocytogenes 4b F23650
LMON169963 ncbi Listeria monocytogenes EGD-e0
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82930
LLAC272623 ncbi Lactococcus lactis lactis Il14030
LLAC272622 ncbi Lactococcus lactis cremoris SK110
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1301
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566011
LINN272626 ncbi Listeria innocua Clip112620
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LCAS321967 ncbi Lactobacillus casei ATCC 3340
LBRE387344 ncbi Lactobacillus brevis ATCC 3670
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1970
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5500
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)0
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)0
LACI272621 ncbi Lactobacillus acidophilus NCFM0
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I1
HWAL362976 ncbi Haloquadratum walsbyi DSM 167901
HSP64091 ncbi Halobacterium sp. NRC-11
HSAL478009 ncbi Halobacterium salinarum R11
HPYL85963 ncbi Helicobacter pylori J990
HPYL357544 ncbi Helicobacter pylori HPAG10
HPY ncbi Helicobacter pylori 266950
HMUK485914 ncbi Halomicrobium mukohataei DSM 122861
HMAR272569 ncbi Haloarcula marismortui ATCC 430491
HHEP235279 ncbi Helicobacter hepaticus ATCC 514490
HBUT415426 ncbi Hyperthermus butylicus DSM 54561
HACI382638 ncbi Helicobacter acinonychis Sheeba0
GVIO251221 ncbi Gloeobacter violaceus PCC 74211
GOXY290633 ncbi Gluconobacter oxydans 621H1
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S850
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255861
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B11
FMAG334413 ncbi Finegoldia magna ATCC 293280
FJOH376686 ncbi Flavobacterium johnsoniae UW1011
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
EFAE226185 ncbi Enterococcus faecalis V5830
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DRAD243230 ncbi Deinococcus radiodurans R10
DNOD246195 ncbi Dichelobacter nodosus VCS1703A1
DGEO319795 ncbi Deinococcus geothermalis DSM 113000
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA1
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis1
CTRA471472 ncbi Chlamydia trachomatis 434/Bu1
CTEP194439 ncbi Chlorobium tepidum TLS1
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPHY357809 ncbi Clostridium phytofermentans ISDg1
CPER289380 ncbi Clostridium perfringens SM1011
CPER195103 ncbi Clostridium perfringens ATCC 131241
CPER195102 ncbi Clostridium perfringens 131
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10621
CNOV386415 ncbi Clostridium novyi NT0
CMUR243161 ncbi Chlamydia muridarum Nigg1
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3821
CMIC31964 ncbi Clavibacter michiganensis sepedonicus1
CMET456442 ncbi Candidatus Methanoregula boonei 6A81
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CKLU431943 ncbi Clostridium kluyveri DSM 5550
CJEJ407148 ncbi Campylobacter jejuni jejuni 811160
CJEJ360109 ncbi Campylobacter jejuni doylei 269.970
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1760
CJEJ195099 ncbi Campylobacter jejuni RM12210
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111680
CJEI306537 ncbi Corynebacterium jeikeium K4111
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29011
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334061
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3810
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130321
CFET360106 ncbi Campylobacter fetus fetus 82-400
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CEFF196164 ncbi Corynebacterium efficiens YS-3141
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131291
CDIF272563 ncbi Clostridium difficile 6301
CCUR360105 ncbi Campylobacter curvus 525.920
CCON360104 ncbi Campylobacter concisus 138260
CCHL340177 ncbi Chlorobium chlorochromatii CaD31
CCAV227941 ncbi Chlamydophila caviae GPIC1
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto1
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6571
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B1
CBOT441772 ncbi Clostridium botulinum F str. Langeland1
CBOT441771 ncbi Clostridium botulinum A str. Hall0
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193971
CBOT36826 Clostridium botulinum A1
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN1
CBLO203907 ncbi Candidatus Blochmannia floridanus1
CACE272562 ncbi Clostridium acetobutylicum ATCC 8241
CABO218497 ncbi Chlamydophila abortus S26/30
BXEN266265 ncbi Burkholderia xenovorans LB4000
BWEI315730 ncbi Bacillus weihenstephanensis KBAB41
BTUR314724 ncbi Borrelia turicatae 91E1350
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54821
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)1
BLON206672 ncbi Bifidobacterium longum NCC27050
BHER314723 ncbi Borrelia hermsii DAH0
BHAL272558 ncbi Bacillus halodurans C-1251
BGAR290434 ncbi Borrelia garinii PBi0
BFRA272559 ncbi Bacteroides fragilis NCTC 93431
BCLA66692 ncbi Bacillus clausii KSM-K161
BCIC186490 Candidatus Baumannia cicadellinicola1
BCEN331271 ncbi Burkholderia cenocepacia AU 10541
BBUR224326 ncbi Borrelia burgdorferi B310
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)1
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)1
BANT592021 ncbi Bacillus anthracis A02481
BANT261594 ncbi Bacillus anthracis Ames Ancestor1
BANT260799 ncbi Bacillus anthracis Sterne1
BAMY326423 ncbi Bacillus amyloliquefaciens FZB421
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K10
AMAR329726 ncbi Acaryochloris marina MBIC110171
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43041
ABUT367737 ncbi Arcobacter butzleri RM40180
AAEO224324 ncbi Aquifex aeolicus VF50


Names of the homologs of the genes in the group in each of these orgs
  EG11019   EG10437   EG10387   EG10317   
WSUC273121
WPIP955
WPIP80849
UURE95667
UURE95664
UPAR505682
UMET351160 RRC458
TWHI218496
TWHI203267
TVOL273116
TTHE300852 TTHA1174
TTHE262724 TT_C0810
TTEN273068 TTE1127
TSP1755 TETH514_1441
TPSE340099 TETH39_1001
TPEN368408 TPEN_1198
TPAL243276 TP_0513
TLET416591 TLET_0893
TKOD69014 TK1595
TERY203124 TERY_4208
TELO197221
TDEN326298
TDEN243275 TDE_0087
TACI273075
SWOL335541 SWOL_0914
STOK273063
STHE292459 STH2123
SSUI391296 SSU98_1332
SSUI391295 SSU05_1315
SSP84588
SSP64471
SSP387093 SUN_0247
SSP321332 CYB_0382
SSP321327 CYA_1577
SSP1131
SSOL273057
SSAP342451 SSP1703
SPYO370554 MGAS10750_SPY0817
SPYO370553 MGAS2096_SPY0795
SPYO370552 MGAS10270_SPY0782
SPYO370551 MGAS9429_SPY0780
SPYO319701 M28_SPY0703
SPYO293653 M5005_SPY0723
SPYO286636 M6_SPY0749
SPYO198466 SPYM3_0635
SPYO193567 SPS1217
SPYO186103 SPYM18_0979
SPYO160490 SPY0922
SMAR399550 SMAR_1220
SHAE279808
SEPI176280 SE_0786
SEPI176279 SERP0674
SAUR93062
SAUR93061 SAOUHSC_01034
SAUR426430
SAUR418127
SAUR367830
SAUR359787
SAUR359786
SAUR282459
SAUR282458
SAUR273036 SAB0954
SAUR196620 MW0970
SAUR158879 SA0939
SAUR158878 SAV1088
SALA317655 SALA_1276
SACI330779
RXYL266117 RXYL_1272
RTYP257363
RRIC452659
RRIC392021
RPRO272947
RMAS416276
RFEL315456
RCON272944
RCAN293613
RBEL391896
RBEL336407
RALB246199
RAKA293614
PTOR263820
PRUM264731 GFRORF2882
PPEN278197
PMOB403833
PMAR93060
PMAR74547
PMAR74546
PMAR59920
PMAR167555
PMAR167546
PMAR167542
PMAR167540
PMAR167539
PMAR146891
PLUT319225 PLUT_1355
PISL384616
PINT246198 PIN_A0390
PHOR70601 PH1984
PFUR186497 PF0175
PAST100379
PARS340102
PAER178306
PABY272844 PAB1178
OTSU357244
NSP387092 NIS_1740
NSEN222891
NPHA348780 NP4902A
MTHE349307 MTHE_0819
MTHE187420 MTH1265
MSYN262723
MSTA339860 MSP_0250
MSED399549
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAZ192952 MM2501
MMAR444158 MMARC6_1071
MMAR426368 MMARC7_0846
MMAR402880 MMARC5_1809
MMAR368407 MEMAR_0505
MMAR267377 MMP1599
MLEP272631 ML0997
MLAB410358 MLAB_1489
MKAN190192 MK1011
MJAN243232 MJ_1105
MHYO295358
MHYO262722
MHYO262719
MHUN323259 MHUN_0638
MGEN243273
MFLO265311
MCAP340047
MBUR259564 MBUR_1310
MBAR269797 MBAR_A3430
MART243272
MAER449447 MAE_24990
MAEO419665
MACE188937 MA1480
LXYL281090 LXX15960
LWEL386043
LSPH444177 BSPH_4371
LSAK314315
LREU557436
LPLA220668
LMON265669
LMON169963
LMES203120
LLAC272623
LLAC272622
LJOH257314
LINT267671 LIC_13111
LINT189518 LA3894
LINN272626
LHEL405566
LGAS324831
LDEL390333
LDEL321956
LCAS321967
LBRE387344
LBOR355277
LBOR355276
LBIF456481
LBIF355278
LACI272621
IHOS453591 IGNI_0236
HWAL362976 HQ1685A
HSP64091 VNG6175G
HSAL478009 OE5298F
HPYL85963
HPYL357544
HPY
HMUK485914 HMUK_1877
HMAR272569 RRNAC1536
HHEP235279
HBUT415426 HBUT_0912
HACI382638
GVIO251221 GLR4142
GOXY290633 GOX0468
FSUC59374
FNUC190304 FN0242
FNOD381764 FNOD_1685
FMAG334413
FJOH376686 FJOH_1171
ERUM302409
ERUM254945
EFAE226185
ECHA205920
ECAN269484
DRAD243230
DNOD246195 DNO_0596
DGEO319795
CVES412965 COSY_0340
CTRA471473 CTLON_0631
CTRA471472 CTL0634
CTEP194439 CT_1384
CSUL444179
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPHY357809 CPHY_0534
CPER289380 CPR_1927
CPER195103 CPF_2215
CPER195102 CPE1959
CPEL335992 SAR11_0949
CNOV386415
CMUR243161 TC_0658
CMIC443906 CMM_2019
CMIC31964 CMS1214
CMET456442 MBOO_1944
CMAQ397948
CKOR374847
CKLU431943
CJEJ407148
CJEJ360109
CJEJ354242
CJEJ195099
CJEJ192222
CJEI306537 JK1108
CHYD246194 CHY_2022
CHUT269798 CHU_3840
CHOM360107
CGLU196627 CG2126
CFET360106
CFEL264202
CEFF196164 CE1833
CDIP257309 DIP1439
CDIF272563 CD0788
CCUR360105
CCON360104
CCHL340177 CAG_1174
CCAV227941 CCA_00265
CBOT536232 CLM_1493
CBOT515621 CLJ_B1431
CBOT508765 CLL_A1004
CBOT441772 CLI_1411
CBOT441771
CBOT441770 CLB_1345
CBOT36826 CBO1318
CBLO291272 BPEN_083
CBLO203907 BFL080
CACE272562 CAC2299
CABO218497
BXEN266265
BWEI315730 BCERKBAB4_3472
BTUR314724
BTHE226186 BT_4098
BSP107806 BU400
BLON206672
BHER314723
BHAL272558 BH1802
BGAR290434
BFRA272559 BF0795
BCLA66692 ABC2426
BCIC186490 BCI_0580
BCEN331271 BCEN_5929
BBUR224326
BAPH372461 BCC_252
BAPH198804 BUSG387
BANT592021 BAA_1898
BANT261594 GBAA1828
BANT260799 BAS1693
BAMY326423 RBAM_013310
BAFZ390236
AYEL322098
AURANTIMONAS
APHA212042
APER272557
AMAR329726 AM1_3438
AMAR234826
ALAI441768
AFUL224325 AF_0838
ABUT367737
AAEO224324


Organism features enriched in list (features available for 262 out of the 276 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00481785292
Arrangment:Clusters 0.00021291517
Disease:Pharyngitis 0.001567388
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 0.00013421111
Disease:Wide_range_of_infections 0.00013421111
Disease:bronchitis_and_pneumonitis 0.001567388
Disease:pneumonia 0.0071659112
Endospores:No 1.658e-9129211
GC_Content_Range4:0-40 2.271e-30161213
GC_Content_Range4:40-60 4.053e-675224
GC_Content_Range4:60-100 9.059e-1625145
GC_Content_Range7:0-30 2.036e-134447
GC_Content_Range7:30-40 2.864e-15117166
GC_Content_Range7:50-60 1.288e-921107
GC_Content_Range7:60-70 3.194e-1522134
Genome_Size_Range5:0-2 2.902e-30129155
Genome_Size_Range5:2-4 0.0027747103197
Genome_Size_Range5:4-6 4.288e-2824184
Genome_Size_Range5:6-10 9.210e-7647
Genome_Size_Range9:0-1 1.924e-102727
Genome_Size_Range9:1-2 1.014e-19102128
Genome_Size_Range9:2-3 0.000038573120
Genome_Size_Range9:4-5 8.440e-101796
Genome_Size_Range9:5-6 3.512e-16788
Genome_Size_Range9:6-8 2.544e-6438
Gram_Stain:Gram_Neg 1.581e-1898333
Gram_Stain:Gram_Pos 0.000074987150
Habitat:Host-associated 0.0011784109206
Habitat:Multiple 0.000011457178
Habitat:Specialized 0.00008073753
Motility:No 0.000704584151
Motility:Yes 4.986e-791267
Optimal_temp.:25-30 0.0001529119
Optimal_temp.:30-37 4.009e-71818
Oxygen_Req:Aerobic 5.649e-659185
Oxygen_Req:Anaerobic 2.247e-769102
Oxygen_Req:Facultative 0.004569477201
Shape:Coccus 0.00005635382
Shape:Irregular_coccus 0.00021291517
Shape:Rod 1.152e-17106347
Shape:Sphere 0.00005091719
Shape:Spiral 7.531e-83034
Temp._range:Hyperthermophilic 2.643e-62123
Temp._range:Mesophilic 0.0013547199473



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951740.7259
GLYCOCAT-PWY (glycogen degradation I)2461970.7159
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)1491430.6812
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3002120.6664
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251780.6512
PWY-4041 (γ-glutamyl cycle)2792010.6483
PWY-5918 (heme biosynthesis I)2721980.6474
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181720.6322
TYRFUMCAT-PWY (tyrosine degradation I)1841550.6294
PWY-1269 (CMP-KDO biosynthesis I)3252150.6246
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2861980.6096
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2911990.6032
GLUTATHIONESYN-PWY (glutathione biosynthesis)3392160.5984
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2962000.5969
NAGLIPASYN-PWY (lipid IVA biosynthesis)3482180.5911
PWY-5857 (ubiquinone-10 biosynthesis (prokaryotic))1831490.5894
PWY-5855 (ubiquinone-7 biosynthesis (prokaryotic))1911510.5752
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2901930.5658
PWY-5148 (acyl-CoA hydrolysis)2271660.5621
PWY-5028 (histidine degradation II)1301170.5604
PWY-5913 (TCA cycle variation IV)3011960.5575
PWY-5856 (ubiquinone-9 biosynthesis (prokaryotic))2551770.5540
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)1761400.5491
PWY0-845 (superpathway of pyridoxal 5'-phosphate biosynthesis and salvage)3292050.5486
REDCITCYC (TCA cycle variation II)1741380.5417
P344-PWY (acrylonitrile degradation)2101550.5394
GDPRHAMSYN-PWY (GDP-D-rhamnose biosynthesis)1561270.5281
UBISYN-PWY (ubiquinol-8 biosynthesis (prokaryotic))3982240.5239
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491700.5238
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491700.5238
ECASYN-PWY (enterobacterial common antigen biosynthesis)1911430.5176
AST-PWY (arginine degradation II (AST pathway))1201060.5162
CHOLINE-BETAINE-ANA-PWY (choline degradation I)1351130.5055
BETSYN-PWY (glycine betaine biosynthesis I (Gram-negative bacteria))1381140.5006
SULFATE-CYS-PWY (superpathway of sulfate assimilation and cysteine biosynthesis)3652100.4993
GALACTCAT-PWY (D-galactonate degradation)104930.4832
PYRIDOXSYN-PWY (pyridoxal 5'-phosphate biosynthesis I)4222250.4819
PWY0-541 (cyclopropane fatty acid (CFA) biosynthesis)3001840.4803
GLUCONSUPER-PWY (D-gluconate degradation)2291550.4801
SO4ASSIM-PWY (sulfate reduction I (assimilatory))3111880.4794
PWY-5340 (sulfate activation for sulfonation)3852130.4758
PWY-46 (putrescine biosynthesis III)1381100.4686
PWY-5386 (methylglyoxal degradation I)3051830.4611
ARGSYNBSUB-PWY (arginine biosynthesis II (acetyl cycle))3832100.4597
P601-PWY (D-camphor degradation)95850.4583
GALACTARDEG-PWY (D-galactarate degradation I)1511150.4553
PWY-3162 (tryptophan degradation V (side chain pathway))94840.4545
P184-PWY (protocatechuate degradation I (meta-cleavage pathway))94840.4545
PWY0-1329 (succinate to cytochrome bo oxidase electron transfer)96850.4529
PLPSAL-PWY (pyridoxal 5'-phosphate salvage pathway)3742060.4523
DAPLYSINESYN-PWY (lysine biosynthesis I)3421950.4513
PHENYLALANINE-DEG1-PWY (phenylalanine degradation I (aerobic))2891750.4486
PWY-5938 ((R)-acetoin biosynthesis I)3762060.4479
PWY-6268 (adenosylcobalamin salvage from cobalamin)3171850.4447
PWY-561 (superpathway of glyoxylate cycle)1621190.4441
PWY-5084 (2-ketoglutarate dehydrogenase complex)3261880.4427
GALACTITOLCAT-PWY (galactitol degradation)73700.4420
GLYOXYLATE-BYPASS (glyoxylate cycle)1691220.4411
PWY-5188 (tetrapyrrole biosynthesis I)4392240.4405
GLUCARDEG-PWY (D-glucarate degradation I)1521130.4360
PWY0-862 (cis-dodecenoyl biosynthesis)3431930.4357
PWY-6389 ((S)-acetoin biosynthesis)3682010.4319
PWY-6087 (4-chlorocatechol degradation)2231450.4291
PWY-2361 (3-oxoadipate degradation)82740.4269
PWY-5669 (phosphatidylethanolamine biosynthesis I)4162150.4235
VALDEG-PWY (valine degradation I)2901710.4194
GLYSYN-THR-PWY (glycine biosynthesis IV)2151400.4186
PWY0-1335 (NADH to cytochrome bo oxidase electron transfer)112900.4176
PWY-5194 (siroheme biosynthesis)3121790.4171
4AMINOBUTMETAB-PWY (superpathway of 4-aminobutyrate degradation)2121380.4138
PWY-5755 (4-hydroxybenzoate biosynthesis II (bacteria and fungi))81720.4130
PWY0-981 (taurine degradation IV)106860.4111
GLUCARGALACTSUPER-PWY (superpathway of D-glucarate and D-galactarate degradation)1351010.4088
PWY-6193 (3-chlorocatechol degradation II (ortho))1941290.4069
PWY-5964 (molybdopterin guanine dinucleotide biosynthesis)2901690.4061
KDOSYN-PWY (KDO transfer to lipid IVA I)1801220.4027
BRANCHED-CHAIN-AA-SYN-PWY (superpathway of leucine, valine, and isoleucine biosynthesis)4582240.4021
PWY0-501 (lipoate biosynthesis and incorporation I)3852020.4006



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG10437   EG10387   EG10317   
EG110190.9985050.9985140.998528
EG104370.9991240.998955
EG103870.999371
EG10317



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PAIRWISE BLAST SCORES:

  EG11019   EG10437   EG10387   EG10317   
EG110190.0f0---
EG10437-0.0f0--
EG10387--0.0f0-
EG10317---0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG11019 (centered at EG11019)
EG10437 (centered at EG10437)
EG10387 (centered at EG10387)
EG10317 (centered at EG10317)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  EG11019   EG10437   EG10387   EG10317   
308/623394/623251/623235/623
AAUR290340:2:Tyes1800--
AAVE397945:0:Tyes35885285420
ABAC204669:0:Tyes-36200-
ABAU360910:0:Tyes0211216972548
ABOR393595:0:Tyes0211421721924
ACAU438753:0:Tyes3087
ACEL351607:0:Tyes084--
ACRY349163:8:Tyes-0279280
ADEH290397:0:Tyes-017213624
AEHR187272:0:Tyes25885540590
AFER243159:0:Tyes-97602588
AFUL224325:0:Tyes0---
AHYD196024:0:Tyes0655203168
AMAR329726:9:Tyes-0--
AMET293826:0:Tyes1174-0-
ANAE240017:0:Tyes1820--
AORE350688:0:Tyes01099393-
APLE416269:0:Tyes14011811-0
APLE434271:0:Tno14011834-0
ASAL382245:5:Tyes3211245331900
ASP1667:3:Tyes1780--
ASP232721:2:Tyes26630202325
ASP62928:0:Tyes329720002198
ASP62977:0:Tyes-15000993
ASP76114:2:Tyes92401684-
AVAR240292:3:Tyes0770277-
BABO262698:1:Tno3076
BAMB339670:3:Tno-118516390
BAMB398577:3:Tno-111714660
BAMY326423:0:Tyes--0-
BANT260799:0:Tno-0--
BANT261594:2:Tno-0--
BANT568206:2:Tyes-0345-
BANT592021:2:Tno-0--
BAPH198804:0:Tyes---0
BAPH372461:0:Tyes---0
BBAC264462:0:Tyes-164927770
BBAC360095:0:Tyes071--
BBRO257310:0:Tyes0292327063769
BCAN483179:1:Tno4087
BCEN331271:0:Tno--0-
BCEN331272:3:Tyes-111214540
BCER226900:1:Tyes-21980-
BCER288681:0:Tno-21100-
BCER315749:1:Tyes-690-
BCER405917:1:Tyes-20220-
BCER572264:1:Tno-22610-
BCIC186490:0:Tyes-0--
BCLA66692:0:Tyes0---
BFRA272559:1:Tyes0---
BFRA295405:0:Tno0-725-
BHAL272558:0:Tyes--0-
BHEN283166:0:Tyes0149--
BJAP224911:0:Fyes-501
BLIC279010:0:Tyes-4660-
BMAL243160:1:Tno-0359911
BMAL320388:1:Tno-152719370
BMAL320389:1:Tyes-04121404
BMEL224914:1:Tno4801
BMEL359391:1:Tno3076
BOVI236:1:Tyes2065
BPAR257311:0:Tno0246525913148
BPER257313:0:Tyes014439242566
BPET94624:0:Tyes3839112413730
BPSE272560:1:Tyes-07921380
BPSE320372:1:Tno-03601023
BPSE320373:1:Tno-04291123
BPUM315750:0:Tyes-3430-
BQUI283165:0:Tyes021--
BSP107806:2:Tyes---0
BSP36773:2:Tyes-134917120
BSP376:0:Tyes-01312
BSUB:0:Tyes-4090-
BSUI204722:1:Tyes4087
BSUI470137:1:Tno-0-6
BTHA271848:1:Tno-9655790
BTHE226186:0:Tyes0---
BTHU281309:1:Tno-20990-
BTHU412694:1:Tno-19160-
BTRI382640:1:Tyes0408--
BVIE269482:7:Tyes-106815600
BWEI315730:4:Tyes-0--
CACE272562:1:Tyes-0--
CAULO:0:Tyes-601
CBEI290402:0:Tyes-4030-
CBLO203907:0:Tyes-0--
CBLO291272:0:Tno-0--
CBOT36826:1:Tno0---
CBOT441770:0:Tyes0---
CBOT441772:1:Tno0---
CBOT498213:1:Tno01766--
CBOT508765:1:Tyes-0--
CBOT515621:2:Tyes0---
CBOT536232:0:Tno0---
CBUR227377:1:Tyes-630-0
CBUR360115:1:Tno-468-0
CBUR434922:2:Tno-0-669
CCAV227941:1:Tyes-0--
CCHL340177:0:Tyes-0--
CDES477974:0:Tyes0804384-
CDIF272563:1:Tyes-0--
CDIP257309:0:Tyes-0--
CEFF196164:0:Fyes-0--
CGLU196627:0:Tyes-0--
CHUT269798:0:Tyes-0--
CHYD246194:0:Tyes--0-
CJAP155077:0:Tyes8273277840
CJEI306537:0:Tyes-0--
CMET456442:0:Tyes0---
CMIC31964:2:Tyes-0--
CMIC443906:2:Tyes-0--
CMUR243161:1:Tyes-0--
CPEL335992:0:Tyes0---
CPER195102:1:Tyes-0--
CPER195103:0:Tno-0--
CPER289380:3:Tyes-0--
CPHY357809:0:Tyes-0--
CPRO264201:0:Fyes-4070-
CPSY167879:0:Tyes0294358511
CRUT413404:0:Tyes1440-706
CSAL290398:0:Tyes2678105702093
CSP501479:8:Fyes5801
CSP78:2:Tyes-601
CTEP194439:0:Tyes-0--
CTET212717:0:Tyes01825--
CTRA471472:0:Tyes-0--
CTRA471473:0:Tno-0--
CVES412965:0:Tyes0---
CVIO243365:0:Tyes-306931320
DARO159087:0:Tyes-0784689
DDES207559:0:Tyes19502680-
DETH243164:0:Tyes068792-
DHAF138119:0:Tyes0-2674-
DNOD246195:0:Tyes-0--
DOLE96561:0:Tyes2829-0-
DPSY177439:2:Tyes022552228-
DRED349161:0:Tyes16620737-
DSHI398580:5:Tyes3098
DSP216389:0:Tyes0645--
DSP255470:0:Tno05591352-
DVUL882:1:Tyes-0145-
ECAR218491:0:Tyes403339560240
ECOL199310:0:Tno2112127800
ECOL316407:0:Tno7299081460
ECOL331111:6:Tno229416210
ECOL362663:0:Tno2510487170
ECOL364106:1:Tno2710547420
ECOL405955:2:Tyes209916040
ECOL409438:6:Tyes289676320
ECOL413997:0:Tno289466480
ECOL439855:4:Tno2010386670
ECOL469008:0:Tno03390369929
ECOL481805:0:Tno03429374528
ECOL585034:0:Tno299586390
ECOL585035:0:Tno2810566460
ECOL585055:0:Tno2910226560
ECOL585056:2:Tno299606510
ECOL585057:0:Tno65715040632
ECOL585397:0:Tno3110086340
ECOL83334:0:Tno2910586850
ECOLI:0:Tno289306190
ECOO157:0:Tno2910216940
EFER585054:1:Tyes279496370
ELIT314225:0:Tyes-054
ESP42895:1:Tyes3397037803374
FALN326424:0:Tyes03544--
FJOH376686:0:Tyes-0--
FNOD381764:0:Tyes0---
FNUC190304:0:Tyes0---
FPHI484022:1:Tyes2260--
FRANT:0:Tno3170--
FSP106370:0:Tyes02179--
FSP1855:0:Tyes38830--
FTUL351581:0:Tno2930--
FTUL393011:0:Tno2690--
FTUL393115:0:Tyes3150--
FTUL401614:0:Tyes0200--
FTUL418136:0:Tno0186--
FTUL458234:0:Tno2570--
GBET391165:0:Tyes-0103102
GFOR411154:0:Tyes02734--
GKAU235909:1:Tyes-3800-
GMET269799:1:Tyes-056
GOXY290633:5:Tyes---0
GSUL243231:0:Tyes-610
GTHE420246:1:Tyes-3410-
GURA351605:0:Tyes-01011
GVIO251221:0:Tyes-0--
HARS204773:0:Tyes-9586490
HAUR316274:2:Tyes41301344-
HBUT415426:0:Tyes0---
HCHE349521:0:Tyes051499665766
HDUC233412:0:Tyes1335244-0
HHAL349124:0:Tyes-05621347
HINF281310:0:Tyes0--395
HINF374930:0:Tyes370--0
HINF71421:0:Tno0--353
HMAR272569:8:Tyes0---
HMOD498761:0:Tyes-19030-
HMUK485914:1:Tyes0---
HNEP81032:0:Tyes307-
HSAL478009:3:Tyes0---
HSOM205914:1:Tyes01072-531
HSOM228400:0:Tno8570-535
HSP64091:1:Tno0---
HWAL362976:1:Tyes0---
IHOS453591:0:Tyes0---
ILOI283942:0:Tyes031924742325
JSP290400:1:Tyes5801
JSP375286:0:Tyes-18457850
KPNE272620:2:Tyes178844990
KRAD266940:2:Fyes056--
LCHO395495:0:Tyes3566235930740
LINT189518:1:Tyes--0-
LINT267671:1:Tno--0-
LINT363253:3:Tyes0-304-
LPNE272624:0:Tno-0-531
LPNE297245:1:Fno-0-574
LPNE297246:1:Fyes-0-594
LPNE400673:0:Tno-0-2691
LSPH444177:1:Tyes-0--
LXYL281090:0:Tyes-0--
MABS561007:1:Tyes047--
MACE188937:0:Tyes0---
MAER449447:0:Tyes-0--
MAQU351348:2:Tyes026967173373
MAVI243243:0:Tyes035--
MBAR269797:1:Tyes0---
MBOV233413:0:Tno033--
MBOV410289:0:Tno033--
MBUR259564:0:Tyes0---
MCAP243233:0:Tyes10592297680
MEXT419610:0:Tyes-601
MFLA265072:0:Tyes-123520930
MGIL350054:3:Tyes033--
MHUN323259:0:Tyes0---
MJAN243232:2:Tyes0---
MKAN190192:0:Tyes0---
MLAB410358:0:Tyes0---
MLEP272631:0:Tyes-0--
MLOT266835:2:Tyes-601
MMAG342108:0:Tyes4701
MMAR267377:0:Tyes0---
MMAR368407:0:Tyes0---
MMAR394221:0:Tyes480-
MMAR402880:1:Tyes0---
MMAR426368:0:Tyes0---
MMAR444158:0:Tyes0---
MMAZ192952:0:Tyes0---
MPET420662:1:Tyes-082-
MSME246196:0:Tyes340--
MSP164756:1:Tno320--
MSP164757:0:Tno340--
MSP189918:2:Tyes320--
MSP266779:3:Tyes3076
MSP400668:0:Tyes026487143002
MSP409:2:Tyes-1301
MSTA339860:0:Tyes0---
MSUC221988:0:Tyes17101015-0
MTBCDC:0:Tno033--
MTBRV:0:Tno033--
MTHE187420:0:Tyes0---
MTHE264732:0:Tyes643-0-
MTHE349307:0:Tyes0---
MTUB336982:0:Tno031--
MTUB419947:0:Tyes033--
MVAN350058:0:Tyes370--
MXAN246197:0:Tyes-01908-
NARO279238:0:Tyes-501
NEUR228410:0:Tyes972414-0
NEUT335283:2:Tyes1670-245
NFAR247156:2:Tyes081--
NGON242231:0:Tyes910501-0
NHAM323097:2:Tyes-601
NMEN122586:0:Tno5450-357
NMEN122587:0:Tyes3630-176
NMEN272831:0:Tno3050-149
NMEN374833:0:Tno3620-170
NMUL323848:3:Tyes-313-0
NOCE323261:1:Tyes19401513-0
NPHA348780:2:Tyes0---
NSP103690:6:Tyes01764--
NSP35761:1:Tyes0934--
NSP387092:0:Tyes0---
NWIN323098:0:Tyes-601
OANT439375:5:Tyes14113901
OCAR504832:0:Tyes-601
OIHE221109:0:Tyes-032-
PABY272844:0:Tyes0---
PACN267747:0:Tyes360--
PAER208963:0:Tyes0530554885211
PAER208964:0:Tno0499151724899
PARC259536:0:Tyes-0-1117
PATL342610:0:Tyes039881011251
PCAR338963:0:Tyes-5101
PCRY335284:1:Tyes-013141248
PDIS435591:0:Tyes0624--
PENT384676:0:Tyes046183344544
PFLU205922:0:Tyes0515331607
PFLU216595:1:Tyes0483312569
PFLU220664:0:Tyes0539350637
PFUR186497:0:Tyes0---
PGIN242619:0:Tyes2970--
PHAL326442:1:Tyes0247141322
PHOR70601:0:Tyes0---
PING357804:0:Tyes0297332192952
PINT246198:1:Tyes0---
PLUM243265:0:Fyes4543441203909
PLUT319225:0:Tyes-0--
PMEN399739:0:Tyes05794138654
PMUL272843:1:Tyes6560-179
PNAP365044:8:Tyes-09011487
PPRO298386:2:Tyes231014461
PPUT160488:0:Tno0481049624738
PPUT351746:0:Tyes0473048834655
PPUT76869:0:Tno0492950844856
PRUM264731:0:Tyes0---
PSP117:0:Tyes5810-2707
PSP296591:2:Tyes-14596720
PSP312153:0:Tyes-320624
PSP56811:2:Tyes-2531830
PSTU379731:0:Tyes036323323243
PSYR205918:0:Tyes055448214401
PSYR223283:2:Tyes047021674627
PTHE370438:0:Tyes-16469420
RCAS383372:0:Tyes5029830-
RDEN375451:4:Tyes3098
RETL347834:5:Tyes-801
REUT264198:3:Tyes-159115650
REUT381666:2:Tyes-180117770
RFER338969:1:Tyes-72014000
RLEG216596:6:Tyes-2901
RMET266264:2:Tyes-166516250
RPAL258594:0:Tyes-601
RPAL316055:0:Tyes-601
RPAL316056:0:Tyes-601
RPAL316057:0:Tyes-601
RPAL316058:0:Tyes-065
RPOM246200:1:Tyes3087
RRUB269796:1:Tyes4801
RSAL288705:0:Tyes16670--
RSOL267608:1:Tyes-7357750
RSP101510:3:Fyes560--
RSP357808:0:Tyes730679-
RSPH272943:4:Tyes3076
RSPH349101:2:Tno3076
RSPH349102:5:Tyes4701
RXYL266117:0:Tyes0---
SACI56780:0:Tyes275325740-
SAGA205921:0:Tno2980--
SAGA208435:0:Tno3680--
SAGA211110:0:Tyes3480--
SALA317655:1:Tyes--0-
SARE391037:0:Tyes430--
SAUR158878:1:Tno0---
SAUR158879:1:Tno0---
SAUR196620:0:Tno0---
SAUR273036:0:Tno0---
SAUR93061:0:Fno0---
SAVE227882:1:Fyes079--
SBAL399599:3:Tyes039632574160
SBAL402882:1:Tno038132514017
SBOY300268:1:Tyes239755950
SCO:2:Fyes800--
SDEG203122:0:Tyes02683486792
SDEN318161:0:Tyes032563514430
SDYS300267:1:Tyes208933950
SELO269084:0:Tyes01409--
SENT209261:0:Tno76010663070
SENT220341:0:Tno76210763070
SENT295319:0:Tno238855660
SENT321314:2:Tno249395890
SENT454169:2:Tno2310406180
SEPI176279:1:Tyes0---
SEPI176280:0:Tno0---
SERY405948:0:Tyes540--
SFLE198214:0:Tyes2710236340
SFLE373384:0:Tno189943290
SFUM335543:0:Tyes-23050-
SGLO343509:3:Tyes215119321310
SGOR29390:0:Tyes6640--
SHAL458817:0:Tyes036983223976
SHIGELLA:0:Tno269972700
SLAC55218:1:Fyes5801
SLOI323850:0:Tyes350724333240
SMAR399550:0:Tyes0---
SMED366394:3:Tyes4701
SMEL266834:2:Tyes4701
SMUT210007:0:Tyes2110--
SONE211586:1:Tyes05664376360
SPEA398579:0:Tno036594057388
SPNE1313:0:Tyes0161--
SPNE170187:0:Tyes0109--
SPNE171101:0:Tno0162--
SPNE487213:0:Tno0167--
SPNE487214:0:Tno0167--
SPNE488221:0:Tno0177--
SPRO399741:1:Tyes4141045144046
SPYO160490:0:Tno-0--
SPYO186103:0:Tno-0--
SPYO193567:0:Tno-0--
SPYO198466:0:Tno-0--
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