CANDIDATE ID: 1050

CANDIDATE ID: 1050

NUMBER OF GENES: 4
AVERAGE SCORE:    9.9919100e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7746 (yhgF) (b3407)
   Products of gene:
     - G7746-MONOMER (predicted transcriptional accessory protein)

- EG11578 (greB) (b3406)
   Products of gene:
     - EG11578-MONOMER (transcription elongation factor GreB)

- EG10672 (ompR) (b3405)
   Products of gene:
     - OMPR-MONOMER (OmpR)
       Regulatees:
        TU0-8762 (omrB)
        TU0-8763 (omrA)
        TU0-8473 (tppB)
        TU0-14682 (ecnB)
        TU0-3901 (sra)
        TU00136 (flhDC)
        TU00392 (csgDEFG)
        TU0-2644 (micF)
        TU356 (nmpC)
        TU00386 (bolA)
        TU00050 (ompF)
        TU00049 (ompC)
        TU00080 (fadL)
     - PHOSPHO-OMPR-MONOMER (OmpR-Phosphorylated)
     - PHOSPHO-OMPR (OmpR-Phosphorylated transcriptional dual regulator)
       Regulatees:
        TU0-14682 (ecnB)
        TU0-3901 (sra)
        TU00136 (flhDC)
        TU00392 (csgDEFG)
        TU0-2644 (micF)
        TU356 (nmpC)
        TU00386 (bolA)
        TU00050 (ompF)
        TU00049 (ompC)
        TU00080 (fadL)

- EG10269 (envZ) (b3404)
   Products of gene:
     - PHOSPHO-ENVZ (EnvZ sensory histidine kinase - phosphorylated)
     - ENVZ-MONOMER (EnvZ)
       Regulatees:
     - ENVZ-CPLX (EnvZ sensory histidine kinase)



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ORGANISMS CONTAINING AT LEAST 3 GENES FROM THE GROUP:

Total number of orgs: 188
Effective number of orgs (counting one per cluster within 468 clusters): 128

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317584
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329534
YPES386656 ncbi Yersinia pestis Pestoides F4
YPES377628 ncbi Yersinia pestis Nepal5164
YPES360102 ncbi Yersinia pestis Antiqua4
YPES349746 ncbi Yersinia pestis Angola4
YPES214092 ncbi Yersinia pestis CO924
YPES187410 ncbi Yersinia pestis KIM 104
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80814
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A4
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110184
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103314
XCAM487884 Xanthomonas campestris pv. paulliniae4
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-104
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80044
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339134
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3064
XAUT78245 ncbi Xanthobacter autotrophicus Py23
VVUL216895 ncbi Vibrio vulnificus CMCP64
VVUL196600 ncbi Vibrio vulnificus YJ0164
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106334
VFIS312309 ncbi Vibrio fischeri ES1144
VEIS391735 ncbi Verminephrobacter eiseniae EF01-24
VCHO345073 ncbi Vibrio cholerae O3954
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169614
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252594
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT24
SSP94122 ncbi Shewanella sp. ANA-34
SSP644076 Silicibacter sp. TrichCH4B3
SSP292414 ncbi Ruegeria sp. TM10403
SSON300269 ncbi Shigella sonnei Ss0464
SSED425104 ncbi Shewanella sediminis HAW-EB34
SPRO399741 ncbi Serratia proteamaculans 5684
SPEA398579 ncbi Shewanella pealeana ATCC 7003454
SONE211586 ncbi Shewanella oneidensis MR-14
SMEL266834 ncbi Sinorhizobium meliloti 10214
SMED366394 ncbi Sinorhizobium medicae WSM4194
SLOI323850 ncbi Shewanella loihica PV-44
SLAC55218 Ruegeria lacuscaerulensis3
SHIGELLA ncbi Shigella flexneri 2a str. 2457T4
SHAL458817 ncbi Shewanella halifaxensis HAW-EB44
SGLO343509 ncbi Sodalis glossinidius morsitans4
SFLE373384 ncbi Shigella flexneri 5 str. 84014
SFLE198214 ncbi Shigella flexneri 2a str. 3014
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4764
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B674
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91504
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT184
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty24
SDYS300267 ncbi Shigella dysenteriae Sd1974
SDEN318161 ncbi Shewanella denitrificans OS2174
SBOY300268 ncbi Shigella boydii Sb2274
SBAL402882 ncbi Shewanella baltica OS1854
SBAL399599 ncbi Shewanella baltica OS1954
SALA317655 ncbi Sphingopyxis alaskensis RB22563
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170253
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170293
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.13
RSOL267608 ncbi Ralstonia solanacearum GMI10004
RPOM246200 ncbi Ruegeria pomeroyi DSS-33
RPAL316058 ncbi Rhodopseudomonas palustris HaA23
RPAL316056 ncbi Rhodopseudomonas palustris BisB183
RPAL316055 ncbi Rhodopseudomonas palustris BisA533
RPAL258594 ncbi Rhodopseudomonas palustris CGA0093
RMET266264 ncbi Ralstonia metallidurans CH344
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38414
RFER338969 ncbi Rhodoferax ferrireducens T1184
REUT381666 ncbi Ralstonia eutropha H164
REUT264198 ncbi Ralstonia eutropha JMP1344
RETL347834 ncbi Rhizobium etli CFN 424
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30004
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a4
PSTU379731 ncbi Pseudomonas stutzeri A15014
PSP56811 Psychrobacter sp.3
PSP296591 ncbi Polaromonas sp. JS6664
PPUT76869 ncbi Pseudomonas putida GB-14
PPUT351746 ncbi Pseudomonas putida F14
PPUT160488 ncbi Pseudomonas putida KT24404
PPRO298386 ncbi Photobacterium profundum SS94
PNAP365044 ncbi Polaromonas naphthalenivorans CJ24
PMEN399739 ncbi Pseudomonas mendocina ymp4
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO14
PING357804 ncbi Psychromonas ingrahamii 373
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1254
PFLU220664 ncbi Pseudomonas fluorescens Pf-54
PFLU216595 ncbi Pseudomonas fluorescens SBW254
PFLU205922 ncbi Pseudomonas fluorescens Pf0-14
PENT384676 ncbi Pseudomonas entomophila L484
PCRY335284 ncbi Psychrobacter cryohalolentis K53
PATL342610 ncbi Pseudoalteromonas atlantica T6c4
PARC259536 ncbi Psychrobacter arcticus 273-43
PAER208964 ncbi Pseudomonas aeruginosa PAO14
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA144
OANT439375 ncbi Ochrobactrum anthropi ATCC 491884
NHAM323097 ncbi Nitrobacter hamburgensis X143
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124443
MSP409 Methylobacterium sp.4
MSP400668 ncbi Marinomonas sp. MWYL14
MSP266779 ncbi Chelativorans sp. BNC14
MPET420662 ncbi Methylibium petroleiphilum PM14
MMAG342108 ncbi Magnetospirillum magneticum AMB-14
MLOT266835 ncbi Mesorhizobium loti MAFF3030994
MFLA265072 ncbi Methylobacillus flagellatus KT3
MEXT419610 ncbi Methylobacterium extorquens PA14
MCAP243233 ncbi Methylococcus capsulatus Bath4
MAQU351348 ncbi Marinobacter aquaeolei VT83
LCHO395495 ncbi Leptothrix cholodnii SP-64
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785784
JSP375286 ncbi Janthinobacterium sp. Marseille4
ILOI283942 ncbi Idiomarina loihiensis L2TR4
HNEP81032 Hyphomonas neptunium3
HCHE349521 ncbi Hahella chejuensis KCTC 23964
HARS204773 ncbi Herminiimonas arsenicoxydans4
GOXY290633 ncbi Gluconobacter oxydans 621H3
GBET391165 ncbi Granulibacter bethesdensis CGDNIH13
ESP42895 Enterobacter sp.4
EFER585054 ncbi Escherichia fergusonii ATCC 354694
ECOO157 ncbi Escherichia coli O157:H7 EDL9334
ECOL83334 Escherichia coli O157:H74
ECOL585397 ncbi Escherichia coli ED1a4
ECOL585057 ncbi Escherichia coli IAI394
ECOL585056 ncbi Escherichia coli UMN0264
ECOL585055 ncbi Escherichia coli 559894
ECOL585035 ncbi Escherichia coli S884
ECOL585034 ncbi Escherichia coli IAI14
ECOL481805 ncbi Escherichia coli ATCC 87394
ECOL469008 ncbi Escherichia coli BL21(DE3)4
ECOL439855 ncbi Escherichia coli SMS-3-54
ECOL413997 ncbi Escherichia coli B str. REL6064
ECOL409438 ncbi Escherichia coli SE114
ECOL405955 ncbi Escherichia coli APEC O14
ECOL364106 ncbi Escherichia coli UTI894
ECOL362663 ncbi Escherichia coli 5364
ECOL331111 ncbi Escherichia coli E24377A4
ECOL316407 ncbi Escherichia coli K-12 substr. W31104
ECOL199310 ncbi Escherichia coli CFT0734
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10434
DSHI398580 ncbi Dinoroseobacter shibae DFL 123
DOLE96561 ncbi Desulfococcus oleovorans Hxd33
DARO159087 ncbi Dechloromonas aromatica RCB4
CVIO243365 ncbi Chromobacterium violaceum ATCC 124724
CSP78 Caulobacter sp.3
CSP501479 Citreicella sp. SE454
CSAL290398 ncbi Chromohalobacter salexigens DSM 30434
CPSY167879 ncbi Colwellia psychrerythraea 34H4
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1113
CBUR360115 ncbi Coxiella burnetii RSA 3313
CBUR227377 ncbi Coxiella burnetii RSA 4933
CAULO ncbi Caulobacter crescentus CB153
BVIE269482 ncbi Burkholderia vietnamiensis G44
BTHA271848 ncbi Burkholderia thailandensis E2644
BSUI470137 ncbi Brucella suis ATCC 234454
BSUI204722 ncbi Brucella suis 13304
BSP376 Bradyrhizobium sp.3
BSP36773 Burkholderia sp.4
BPSE320373 ncbi Burkholderia pseudomallei 6684
BPSE320372 ncbi Burkholderia pseudomallei 1710b4
BPSE272560 ncbi Burkholderia pseudomallei K962434
BPET94624 Bordetella petrii4
BPER257313 ncbi Bordetella pertussis Tohama I4
BPAR257311 ncbi Bordetella parapertussis 128224
BOVI236 Brucella ovis3
BMEL359391 ncbi Brucella melitensis biovar Abortus 23083
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M4
BMAL320389 ncbi Burkholderia mallei NCTC 102474
BMAL320388 ncbi Burkholderia mallei SAVP14
BMAL243160 ncbi Burkholderia mallei ATCC 233444
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1103
BCEN331272 ncbi Burkholderia cenocepacia HI24244
BCEN331271 ncbi Burkholderia cenocepacia AU 10544
BCAN483179 ncbi Brucella canis ATCC 233654
BBRO257310 ncbi Bordetella bronchiseptica RB504
BAMB398577 ncbi Burkholderia ambifaria MC40-64
BAMB339670 ncbi Burkholderia ambifaria AMMD4
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9413
ASP76114 ncbi Aromatoleum aromaticum EbN14
ASP62977 ncbi Acinetobacter sp. ADP14
ASP62928 ncbi Azoarcus sp. BH724
ASP232721 ncbi Acidovorax sp. JS424
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4494
AHYD196024 Aeromonas hydrophila dhakensis4
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232703
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-14
ACRY349163 ncbi Acidiphilium cryptum JF-53
ACAU438753 ncbi Azorhizobium caulinodans ORS 5713
ABOR393595 ncbi Alcanivorax borkumensis SK24
ABAU360910 ncbi Bordetella avium 197N4
AAVE397945 ncbi Acidovorax citrulli AAC00-14


Names of the homologs of the genes in the group in each of these orgs
  G7746   EG11578   EG10672   EG10269   
YPSE349747 YPSIP31758_3982YPSIP31758_3981YPSIP31758_3980YPSIP31758_3979
YPSE273123 YPTB3766YPTB3765YPTB3764YPTB3763
YPES386656 YPDSF_0061YPDSF_0062YPDSF_0063YPDSF_0064
YPES377628 YPN_3931YPN_3930YPN_3929YPN_3928
YPES360102 YPA_3335YPA_3334YPA_3333YPA_3332
YPES349746 YPANGOLA_A3743YPANGOLA_A3982YPANGOLA_A3741YPANGOLA_A3740
YPES214092 YPO0134YPO0135YPO0136YPO0137
YPES187410 Y3913Y3915Y3916Y3917
YENT393305 YE4000YE4003YE4004YE4005
XORY360094 XOOORF_2451XOOORF_3632XOOORF_1023XOOORF_1017
XORY342109 XOO2091XOO3097XOO3651XOO3658
XORY291331 XOO2225XOO3271XOO3870XOO3875
XCAM487884 XCC-B100_2027XCC-B100_1598XCC-B100_0803XCC-B100_0802
XCAM316273 XCAORF_2422XCAORF_2901XCAORF_3731XCAORF_3732
XCAM314565 XC_1964XC_1555XC_0770XC_0769
XCAM190485 XCC2154XCC2563XCC3394XCC3395
XAXO190486 XAC2053XAC2734XAC0730XAC0729
XAUT78245 XAUT_2166XAUT_2423XAUT_2156
VVUL216895 VV1_0860VV1_0859VV1_0858VV1_0857
VVUL196600 VV0234VV0235VV0236VV0237
VPAR223926 VP0150VP0152VP0154VP0155
VFIS312309 VF0120VF0121VF0114VF0115
VEIS391735 VEIS_1042VEIS_1146VEIS_4363VEIS_4362
VCHO345073 VC0395_A2288VC0395_A2287VC0395_A2286VC0395_A2285
VCHO VC2716VC2715VC2714VC2713
TDEN292415 TBD_1945TBD_0520TBD_2354TBD_2353
STYP99287 STM3504STM3503STM3502STM3501
SSP94122 SHEWANA3_4013SHEWANA3_4014SHEWANA3_4017SHEWANA3_4018
SSP644076 SCH4B_4024SCH4B_3250SCH4B_2157
SSP292414 TM1040_0703TM1040_2924TM1040_1479
SSON300269 SSO_3538SSO_3537SSO_3536SSO_3535
SSED425104 SSED_0173SSED_0170SSED_0168SSED_0167
SPRO399741 SPRO_4627SPRO_4626SPRO_4621SPRO_4620
SPEA398579 SPEA_4015SPEA_4016SPEA_4017SPEA_4018
SONE211586 SO_4629SO_4631SO_4633SO_4634
SMEL266834 SMC02644SMC01218SMB21561SMC01595
SMED366394 SMED_0686SMED_1254SMED_6320SMED_2246
SLOI323850 SHEW_3634SHEW_3636SHEW_3637SHEW_3638
SLAC55218 SL1157_A0228SL1157_0971SL1157_2732
SHIGELLA YHGFGREBOMPRENVZ
SHAL458817 SHAL_0242SHAL_0241SHAL_0240SHAL_0239
SGLO343509 SG2321SG2320SG2319SG2318
SFLE373384 SFV_3412SFV_3411SFV_3410SFV_3409
SFLE198214 AAN44887.1AAN44886.1AAN44885.1AAN44884.1
SENT454169 SEHA_C3811SEHA_C3810SEHA_C3809SEHA_C3808
SENT321314 SCH_3436SCH_3435SCH_3434SCH_3433
SENT295319 SPA3369SPA3368SPA3367SPA3366
SENT220341 STY4292STY4293STY4294STY4295
SENT209261 T4002T4003T4004T4005
SDYS300267 SDY_3669SDY_3670SDY_3671SDY_3672
SDEN318161 SDEN_0243SDEN_0240SDEN_3538SDEN_3539
SBOY300268 SBO_3394SBO_3393SBO_3392SBO_3391
SBAL402882 SHEW185_4202SHEW185_4203SHEW185_4206SHEW185_4207
SBAL399599 SBAL195_4334SBAL195_4335SBAL195_4338SBAL195_4339
SALA317655 SALA_1733SALA_0758SALA_0759
RSPH349102 RSPH17025_0405RSPH17025_2788RSPH17025_1442
RSPH349101 RSPH17029_2430RSPH17029_2799RSPH17029_1836
RSPH272943 RSP_0774RSP_1138RSP_0203
RSOL267608 RSC1623RSC2152RSC1648RSC1647
RPOM246200 SPO_A0306SPO_0251SPO_2173
RPAL316058 RPB_3277RPB_1961RPB_1960
RPAL316056 RPC_0259RPC_4654RPC_1385
RPAL316055 RPE_0415RPE_4656RPE_1426
RPAL258594 RPA0584RPA3570RPA4367
RMET266264 RMET_1232RMET_0859RMET_1947RMET_1948
RLEG216596 RL0952RL3422RL3599RL3453
RFER338969 RFER_2483RFER_3150RFER_2732RFER_2733
REUT381666 H16_A1429H16_A0956H16_A1463H16_A1462
REUT264198 REUT_A1339REUT_A2470REUT_A1368REUT_A0391
RETL347834 RHE_CH00891RHE_CH02969RHE_PF00530RHE_CH03009
PSYR223283 PSPTO_0327PSPTO_2265PSPTO_0328PSPTO_0329
PSYR205918 PSYR_0257PSYR_2065PSYR_0258PSYR_0259
PSTU379731 PST_0278PST_2017PST_0286PST_0287
PSP56811 PSYCPRWF_2122PSYCPRWF_2121PSYCPRWF_0199
PSP296591 BPRO_2537BPRO_1332BPRO_2713BPRO_2714
PPUT76869 PPUTGB1_0270PPUTGB1_1917PPUTGB1_0271PPUTGB1_0272
PPUT351746 PPUT_0260PPUT_3454PPUT_0261PPUT_0262
PPUT160488 PP_0245PP_2315PP_0246PP_0247
PPRO298386 PBPRA0182PBPRA0183PBPRA0184PBPRA0185
PNAP365044 PNAP_1942PNAP_0808PNAP_2546PNAP_2547
PMEN399739 PMEN_0358PMEN_2561PMEN_0359PMEN_0360
PLUM243265 PLU0210PLU0211PLU0212PLU0213
PING357804 PING_1810PING_1375PING_2285
PHAL326442 PSHAA2854PSHAA2851PSHAA2850PSHAA2849
PFLU220664 PFL_0275PFL_4281PFL_0276PFL_0277
PFLU216595 PFLU0258PFLU1696PFLU0259PFLU0260
PFLU205922 PFL_0259PFL_4017PFL_0260PFL_0261
PENT384676 PSEEN0226PSEEN1883PSEEN0227PSEEN0228
PCRY335284 PCRYO_0136PCRYO_0135PCRYO_2323
PATL342610 PATL_4226PATL_0107PATL_0225PATL_0226
PARC259536 PSYC_0127PSYC_0126PSYC_2020
PAER208964 PA5201PA2859PA5200PA5199
PAER208963 PA14_68710PA14_27130PA14_68700PA14_68680
OANT439375 OANT_1466OANT_1660OANT_1644OANT_1643
NHAM323097 NHAM_1037NHAM_3683NHAM_3136
NARO279238 SARO_1441SARO_0441SARO_2618
MSP409 M446_2945M446_3400M446_0852M446_0851
MSP400668 MMWYL1_0767MMWYL1_3777MMWYL1_4347MMWYL1_1563
MSP266779 MESO_0317MESO_2118MESO_4123MESO_4124
MPET420662 MPE_A1792MPE_A2723MPE_A1574MPE_A1573
MMAG342108 AMB3417AMB4418AMB0549AMB0548
MLOT266835 MLL2881MLL2568MLR2740MLR2667
MFLA265072 MFLA_1753MFLA_0654MFLA_0653
MEXT419610 MEXT_0813MEXT_1089MEXT_3772MEXT_3773
MCAP243233 MCA_1032MCA_1851MCA_0772MCA_0771
MAQU351348 MAQU_0464MAQU_3737MAQU_2321
LCHO395495 LCHO_1862LCHO_0732LCHO_1895LCHO_1894
KPNE272620 GKPORF_B3118GKPORF_B3117GKPORF_B3116GKPORF_B3115
JSP375286 MMA_3263MMA_1325MMA_1413MMA_1412
ILOI283942 IL0281IL0282IL0320IL0321
HNEP81032 HNE_2386HNE_0643HNE_3094
HCHE349521 HCH_06423HCH_00585HCH_06085HCH_06084
HARS204773 HEAR3018HEAR2133HEAR1907HEAR1908
GOXY290633 GOX1860GOX1600GOX0120
GBET391165 GBCGDNIH1_1805GBCGDNIH1_0737GBCGDNIH1_2242
ESP42895 ENT638_3820ENT638_3819ENT638_3818ENT638_3817
EFER585054 EFER_3375EFER_3374EFER_3373EFER_3372
ECOO157 YHGFGREBOMPRENVZ
ECOL83334 ECS4249ECS4248ECS4247ECS4246
ECOL585397 ECED1_4067ECED1_4066ECED1_4065ECED1_4064
ECOL585057 ECIAI39_3887ECIAI39_3886ECIAI39_3885ECIAI39_3884
ECOL585056 ECUMN_3866ECUMN_3865ECUMN_3864ECUMN_3863
ECOL585055 EC55989_3815EC55989_3814EC55989_3813EC55989_3812
ECOL585035 ECS88_3794ECS88_3793ECS88_3792ECS88_3791
ECOL585034 ECIAI1_3550ECIAI1_3549ECIAI1_3548ECIAI1_3547
ECOL481805 ECOLC_0306ECOLC_0307ECOLC_0308ECOLC_0309
ECOL469008 ECBD_0338ECBD_0339ECBD_0340ECBD_0341
ECOL439855 ECSMS35_3688ECSMS35_3687ECSMS35_3686ECSMS35_3685
ECOL413997 ECB_03259ECB_03258ECB_03257ECB_03256
ECOL409438 ECSE_3672ECSE_3671ECSE_3670ECSE_3669
ECOL405955 APECO1_3057APECO1_3058APECO1_3059APECO1_3060
ECOL364106 UTI89_C3908UTI89_C3907UTI89_C3905UTI89_C3904
ECOL362663 ECP_3493ECP_3492ECP_3491ECP_3490
ECOL331111 ECE24377A_3881ECE24377A_3880ECE24377A_3879ECE24377A_3878
ECOL316407 ECK3394:JW3370:B3407ECK3393:JW3369:B3406ECK3392:JW3368:B3405ECK3391:JW3367:B3404
ECOL199310 C4184C4183C4181C4180
ECAR218491 ECA4122ECA4118ECA4108ECA4107
DSHI398580 DSHI_3076DSHI_3299DSHI_2498
DOLE96561 DOLE_0163DOLE_2221DOLE_1321
DARO159087 DARO_2744DARO_1126DARO_1980DARO_1979
CVIO243365 CV_1537CV_3384CV_0216CV_0217
CSP78 CAUL_4293CAUL_3286CAUL_1586
CSP501479 CSE45_0683CSE45_3657CSE45_4111CSE45_1719
CSAL290398 CSAL_2655CSAL_2558CSAL_2418CSAL_2417
CPSY167879 CPS_4965CPS_4966CPS_4597CPS_4596
CBUR434922 COXBU7E912_1369COXBU7E912_2107COXBU7E912_2106
CBUR360115 COXBURSA331_A1429COXBURSA331_A0079COXBURSA331_A0080
CBUR227377 CBU_1280CBU_2006CBU_2005
CAULO CC2848CC1182CC1181
BVIE269482 BCEP1808_1725BCEP1808_0919BCEP1808_1865BCEP1808_1866
BTHA271848 BTH_I2248BTH_I1591BTH_I2094BTH_I2093
BSUI470137 BSUIS_B0897BSUIS_A1560BSUIS_B0474BSUIS_A1579
BSUI204722 BR_A0904BR_1504BR_A0474BR_A0473
BSP376 BRADO0672BRADO5703BRADO6042
BSP36773 BCEP18194_A5099BCEP18194_A4110BCEP18194_A5249BCEP18194_A5250
BPSE320373 BURPS668_2174BURPS668_2944BURPS668_2352BURPS668_2353
BPSE320372 BURPS1710B_A2540BURPS1710B_A3301BURPS1710B_A1307BURPS1710B_A1308
BPSE272560 BPSL1527BPSL2560BPSL2094BPSL2095
BPET94624 BPET1844BPET2758BPET1700BPET1699
BPER257313 BP1144BP1117BP3554BP3223
BPAR257311 BPP3201BPP1238BPP3359BPP3360
BOVI236 GBOORF1517GBOORFA0462GBOORF1536
BMEL359391 BAB1_1523BAB2_0762BAB1_1539
BMEL224914 BMEII0392BMEI0508BMEII0791BMEII0792
BMAL320389 BMA10247_1091BMA10247_1959BMA10247_1253BMA10247_1254
BMAL320388 BMASAVP1_A1819BMASAVP1_A0820BMASAVP1_A1980BMASAVP1_A1981
BMAL243160 BMA_1329BMA_2091BMA_1485BMA_1486
BJAP224911 BLL7280BLR6651BLR7462
BCEN331272 BCEN2424_1798BCEN2424_1002BCEN2424_1938BCEN2424_1939
BCEN331271 BCEN_6281BCEN_0523BCEN_6141BCEN_6140
BCAN483179 BCAN_B0923BCAN_A1541BCAN_A1557BCAN_B0475
BBRO257310 BB3601BB2307BB3810BB3811
BAMB398577 BAMMC406_1709BAMMC406_0874BAMMC406_1853BAMMC406_1854
BAMB339670 BAMB_1736BAMB_0862BAMB_1926BAMB_1927
BABO262698 BRUAB1_1497BRUAB2_0748BRUAB1_1513
ASP76114 EBA6834EBA4864EBA6497EBA6498
ASP62977 ACIAD3386ACIAD2814ACIAD3388ACIAD3389
ASP62928 AZO1659AZO1424AZO1709AZO1708
ASP232721 AJS_1707AJS_0950AJS_3153AJS_3154
ASAL382245 ASA_4094ASA_4092ASA_4091ASA_4090
AHYD196024 AHA_0303AHA_0304AHA_0305AHA_0306
AFER243159 AFE_2401AFE_3059AFE_2919
AEHR187272 MLG_1472MLG_1980MLG_1148MLG_1149
ACRY349163 ACRY_0910ACRY_2179ACRY_0853
ACAU438753 AZC_0102AZC_0166AZC_3975
ABOR393595 ABO_0264ABO_2457ABO_0268ABO_0269
ABAU360910 BAV1215BAV1545BAV1066BAV1065
AAVE397945 AAVE_3421AAVE_3586AAVE_1584AAVE_1583


Organism features enriched in list (features available for 173 out of the 188 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00027981492
Disease:Brucellosis 0.002208255
Disease:Bubonic_plague 0.000641866
Disease:Dysentery 0.000641866
Disease:Gastroenteritis 0.00045891013
Endospores:No 4.569e-1031211
GC_Content_Range4:0-40 2.363e-392213
GC_Content_Range4:40-60 1.082e-692224
GC_Content_Range4:60-100 1.908e-1379145
GC_Content_Range7:30-40 6.312e-282166
GC_Content_Range7:50-60 2.746e-856107
GC_Content_Range7:60-70 2.774e-1679134
Genome_Size_Range5:2-4 3.089e-929197
Genome_Size_Range5:4-6 5.270e-31115184
Genome_Size_Range5:6-10 1.548e-62947
Genome_Size_Range9:2-3 3.759e-1010120
Genome_Size_Range9:4-5 4.171e-125896
Genome_Size_Range9:5-6 7.953e-145788
Genome_Size_Range9:6-8 5.005e-82738
Gram_Stain:Gram_Neg 3.127e-33160333
Habitat:Host-associated 0.005280449206
Habitat:Multiple 7.545e-675178
Habitat:Specialized 0.0021280753
Motility:No 1.765e-1312151
Motility:Yes 6.254e-14120267
Optimal_temp.:25-30 7.954e-71619
Oxygen_Req:Anaerobic 9.602e-143102
Oxygen_Req:Facultative 2.108e-991201
Shape:Coccus 6.749e-7782
Shape:Rod 1.901e-17147347
Shape:Sphere 0.0091947119
Shape:Spiral 0.0000646134
Temp._range:Mesophilic 0.0040851151473
Temp._range:Psychrophilic 0.000343689
Temp._range:Thermophilic 0.0000457135



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 337
Effective number of orgs (counting one per cluster within 468 clusters): 259

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
WSUC273121 ncbi Wolinella succinogenes DSM 17400
WPIP955 Wolbachia pipientis1
WPIP80849 Wolbachia endosymbiont of Brugia malayi1
UURE95667 Ureaplasma urealyticum serovar 131
UURE95664 Ureaplasma urealyticum serovar 101
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278151
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTHE300852 ncbi Thermus thermophilus HB80
TTHE262724 ncbi Thermus thermophilus HB270
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB41
TSP28240 Thermotoga sp.1
TROS309801 ncbi Thermomicrobium roseum DSM 51590
TPET390874 ncbi Thermotoga petrophila RKU-11
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols1
TMAR243274 ncbi Thermotoga maritima MSB81
TLET416591 ncbi Thermotoga lettingae TMO1
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TFUS269800 ncbi Thermobifida fusca YX1
TERY203124 ncbi Trichodesmium erythraeum IMS1010
TELO197221 ncbi Thermosynechococcus elongatus BP-10
TDEN243275 ncbi Treponema denticola ATCC 354051
TCRU317025 ncbi Thiomicrospira crunogena XCL-21
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen0
STOK273063 ncbi Sulfolobus tokodaii 70
STHE322159 ncbi Streptococcus thermophilus LMD-91
STHE299768 ncbi Streptococcus thermophilus CNRZ10661
STHE264199 ncbi Streptococcus thermophilus LMG 183111
SSUI391296 ncbi Streptococcus suis 98HAH331
SSUI391295 ncbi Streptococcus suis 05ZYH331
SSP387093 ncbi Sulfurovum sp. NBC37-11
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)1
SSP321327 ncbi Synechococcus sp. JA-3-3Ab1
SSP1148 ncbi Synechocystis sp. PCC 68030
SSOL273057 ncbi Sulfolobus solfataricus P20
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153051
SPYO370554 ncbi Streptococcus pyogenes MGAS107501
SPYO370553 ncbi Streptococcus pyogenes MGAS20961
SPYO370552 ncbi Streptococcus pyogenes MGAS102701
SPYO370551 ncbi Streptococcus pyogenes MGAS94291
SPYO319701 ncbi Streptococcus pyogenes MGAS61801
SPYO293653 ncbi Streptococcus pyogenes MGAS50051
SPYO286636 ncbi Streptococcus pyogenes MGAS103941
SPYO198466 ncbi Streptococcus pyogenes MGAS3151
SPYO193567 ncbi Streptococcus pyogenes SSI-11
SPYO186103 ncbi Streptococcus pyogenes MGAS82321
SPYO160490 ncbi Streptococcus pyogenes M1 GAS1
SPNE488221 ncbi Streptococcus pneumoniae 705851
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-61
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-141
SPNE171101 ncbi Streptococcus pneumoniae R61
SPNE170187 ncbi Streptococcus pneumoniae G541
SPNE1313 Streptococcus pneumoniae1
SMUT210007 ncbi Streptococcus mutans UA1591
SMAR399550 ncbi Staphylothermus marinus F10
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14351
SGOR29390 Streptococcus gordonii Challis1
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23381
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122281
SEPI176279 ncbi Staphylococcus epidermidis RP62A1
SELO269084 ncbi Synechococcus elongatus PCC 63010
SCO ncbi Streptomyces coelicolor A3(2)1
SAVE227882 ncbi Streptomyces avermitilis MA-46801
SAUR93062 ncbi Staphylococcus aureus aureus COL1
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83251
SAUR426430 ncbi Staphylococcus aureus aureus Newman1
SAUR418127 ncbi Staphylococcus aureus aureus Mu31
SAUR367830 Staphylococcus aureus aureus USA3001
SAUR359787 ncbi Staphylococcus aureus aureus JH11
SAUR359786 ncbi Staphylococcus aureus aureus JH91
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4761
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2521
SAUR273036 ncbi Staphylococcus aureus RF1221
SAUR196620 ncbi Staphylococcus aureus aureus MW21
SAUR158879 ncbi Staphylococcus aureus aureus N3151
SAUR158878 ncbi Staphylococcus aureus aureus Mu501
SARE391037 ncbi Salinispora arenicola CNS-2051
SAGA211110 ncbi Streptococcus agalactiae NEM3161
SAGA208435 ncbi Streptococcus agalactiae 2603V/R1
SAGA205921 ncbi Streptococcus agalactiae A9091
SACI56780 ncbi Syntrophus aciditrophicus SB0
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RSP101510 ncbi Rhodococcus jostii RHA11
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332090
RCAN293613 ncbi Rickettsia canadensis McKiel1
RALB246199 Ruminococcus albus 81
PTOR263820 ncbi Picrophilus torridus DSM 97900
PTHE370438 ncbi Pelotomaculum thermopropionicum SI1
PSP117 Pirellula sp.1
PRUM264731 ncbi Prevotella ruminicola 231
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257451
PMOB403833 ncbi Petrotoga mobilis SJ951
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR59920 ncbi Prochlorococcus marinus NATL2A0
PMAR167555 ncbi Prochlorococcus marinus NATL1A0
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13750
PMAR146891 ncbi Prochlorococcus marinus AS96010
PLUT319225 ncbi Chlorobium luteolum DSM 2730
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 171
PHOR70601 ncbi Pyrococcus horikoshii OT30
PGIN242619 ncbi Porphyromonas gingivalis W830
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PDIS435591 ncbi Parabacteroides distasonis ATCC 85031
PCAR338963 ncbi Pelobacter carbinolicus DSM 23801
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PAER178306 ncbi Pyrobaculum aerophilum IM20
PACN267747 ncbi Propionibacterium acnes KPA1712020
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2551
NSP387092 ncbi Nitratiruptor sp. SB155-21
NSP35761 Nocardioides sp.0
NSP103690 ncbi Nostoc sp. PCC 71201
NSEN222891 ncbi Neorickettsia sennetsu Miyayama1
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
NOCE323261 ncbi Nitrosococcus oceani ATCC 197071
NFAR247156 ncbi Nocardia farcinica IFM 101521
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-11
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra0
MTUB336982 ncbi Mycobacterium tuberculosis F110
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE264732 ncbi Moorella thermoacetica ATCC 390730
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MTBRV ncbi Mycobacterium tuberculosis H37Rv0
MTBCDC ncbi Mycobacterium tuberculosis CDC15510
MSYN262723 ncbi Mycoplasma synoviae 531
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30911
MSP189918 ncbi Mycobacterium sp. KMS1
MSP164757 ncbi Mycobacterium sp. JLS1
MSP164756 ncbi Mycobacterium sp. MCS1
MSME246196 ncbi Mycobacterium smegmatis MC2 1551
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C61
MMAR426368 ncbi Methanococcus maripaludis C71
MMAR402880 ncbi Methanococcus maripaludis C51
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S21
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK1
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P20
MBOV233413 ncbi Mycobacterium bovis AF2122/970
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MAVI243243 ncbi Mycobacterium avium 1040
MART243272 ncbi Mycoplasma arthritidis 158L3-11
MAER449447 ncbi Microcystis aeruginosa NIES-8431
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
MABS561007 ncbi Mycobacterium abscessus ATCC 199771
LXYL281090 ncbi Leifsonia xyli xyli CTCB070
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53341
LSPH444177 ncbi Lysinibacillus sphaericus C3-411
LSAK314315 ncbi Lactobacillus sakei sakei 23K1
LREU557436 ncbi Lactobacillus reuteri DSM 200161
LPNE297246 ncbi Legionella pneumophila Paris1
LPNE297245 ncbi Legionella pneumophila Lens1
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 11
LPLA220668 ncbi Lactobacillus plantarum WCFS11
LMON265669 ncbi Listeria monocytogenes 4b F23651
LMON169963 ncbi Listeria monocytogenes EGD-e1
LLAC272623 ncbi Lactococcus lactis lactis Il14031
LLAC272622 ncbi Lactococcus lactis cremoris SK111
LJOH257314 ncbi Lactobacillus johnsonii NCC 5331
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-001
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1300
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566010
LINN272626 ncbi Listeria innocua Clip112621
LHEL405566 ncbi Lactobacillus helveticus DPC 45711
LGAS324831 ncbi Lactobacillus gasseri ATCC 333231
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118421
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3651
LCAS321967 ncbi Lactobacillus casei ATCC 3341
LBRE387344 ncbi Lactobacillus brevis ATCC 3671
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1970
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5500
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)0
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)0
LACI272621 ncbi Lactobacillus acidophilus NCFM1
KRAD266940 ncbi Kineococcus radiotolerans SRS302160
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSAL478009 ncbi Halobacterium salinarum R10
HPYL85963 ncbi Helicobacter pylori J991
HPYL357544 ncbi Helicobacter pylori HPAG11
HPY ncbi Helicobacter pylori 266951
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMOD498761 ncbi Heliobacterium modesticaldum Ice11
HMAR272569 ncbi Haloarcula marismortui ATCC 430490
HHEP235279 ncbi Helicobacter hepaticus ATCC 514490
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HACI382638 ncbi Helicobacter acinonychis Sheeba1
GVIO251221 ncbi Gloeobacter violaceus PCC 74211
GFOR411154 ncbi Gramella forsetii KT08030
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-001
FTUL418136 ncbi Francisella tularensis tularensis WY96-34181
FTUL401614 ncbi Francisella novicida U1121
FTUL393115 ncbi Francisella tularensis tularensis FSC1981
FTUL393011 ncbi Francisella tularensis holarctica OSU181
FTUL351581 Francisella tularensis holarctica FSC2001
FSP1855 Frankia sp. EAN1pec1
FSP106370 ncbi Frankia sp. CcI31
FRANT ncbi Francisella tularensis tularensis SCHU S41
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250171
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255861
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B10
FMAG334413 ncbi Finegoldia magna ATCC 293281
FJOH376686 ncbi Flavobacterium johnsoniae UW1011
FALN326424 ncbi Frankia alni ACN14a1
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
EFAE226185 ncbi Enterococcus faecalis V5831
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake1
DSP255470 ncbi Dehalococcoides sp. CBDB10
DSP216389 ncbi Dehalococcoides sp. BAV10
DRAD243230 ncbi Deinococcus radiodurans R10
DPSY177439 ncbi Desulfotalea psychrophila LSv540
DGEO319795 ncbi Deinococcus geothermalis DSM 113000
DETH243164 ncbi Dehalococcoides ethenogenes 1950
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G201
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA0
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTET212717 ncbi Clostridium tetani E881
CTEP194439 ncbi Chlorobium tepidum TLS0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE251
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3821
CMIC31964 ncbi Clavibacter michiganensis sepedonicus1
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CKLU431943 ncbi Clostridium kluyveri DSM 5551
CJEJ407148 ncbi Campylobacter jejuni jejuni 811160
CJEJ360109 ncbi Campylobacter jejuni doylei 269.970
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1760
CJEJ195099 ncbi Campylobacter jejuni RM12210
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111680
CJEI306537 ncbi Corynebacterium jeikeium K4111
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29011
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334061
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3811
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130321
CFET360106 ncbi Campylobacter fetus fetus 82-400
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CEFF196164 ncbi Corynebacterium efficiens YS-3141
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131291
CDIF272563 ncbi Clostridium difficile 6301
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C0
CCUR360105 ncbi Campylobacter curvus 525.921
CCON360104 ncbi Campylobacter concisus 138261
CCHL340177 ncbi Chlorobium chlorochromatii CaD30
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B1
CBOT498213 ncbi Clostridium botulinum B1 str. Okra1
CBOT441772 ncbi Clostridium botulinum F str. Langeland1
CBOT441771 ncbi Clostridium botulinum A str. Hall1
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193971
CBOT36826 Clostridium botulinum A1
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN1
CBLO203907 ncbi Candidatus Blochmannia floridanus1
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80521
CACE272562 ncbi Clostridium acetobutylicum ATCC 8241
CABO218497 ncbi Chlamydophila abortus S26/30
BWEI315730 ncbi Bacillus weihenstephanensis KBAB41
BTUR314724 ncbi Borrelia turicatae 91E1350
BTHU412694 ncbi Bacillus thuringiensis Al Hakam1
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-271
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54821
BSUB ncbi Bacillus subtilis subtilis 1681
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)1
BPUM315750 ncbi Bacillus pumilus SAFR-0321
BLON206672 ncbi Bifidobacterium longum NCC27051
BLIC279010 ncbi Bacillus licheniformis ATCC 145801
BHER314723 ncbi Borrelia hermsii DAH0
BGAR290434 ncbi Borrelia garinii PBi0
BFRA295405 ncbi Bacteroides fragilis YCH461
BFRA272559 ncbi Bacteroides fragilis NCTC 93431
BCIC186490 Candidatus Baumannia cicadellinicola1
BCER288681 ncbi Bacillus cereus E33L1
BCER226900 ncbi Bacillus cereus ATCC 145791
BBUR224326 ncbi Borrelia burgdorferi B310
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)1
BANT592021 ncbi Bacillus anthracis A02481
BANT568206 ncbi Bacillus anthracis CDC 6841
BANT261594 ncbi Bacillus anthracis Ames Ancestor1
BANT260799 ncbi Bacillus anthracis Sterne1
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AVAR240292 ncbi Anabaena variabilis ATCC 294131
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
APHA212042 ncbi Anaplasma phagocytophilum HZ1
APER272557 ncbi Aeropyrum pernix K10
ANAE240017 Actinomyces oris MG10
AMET293826 ncbi Alkaliphilus metalliredigens QYMF1
AMAR329726 ncbi Acaryochloris marina MBIC110171
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A1
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
ACEL351607 ncbi Acidothermus cellulolyticus 11B0
ABUT367737 ncbi Arcobacter butzleri RM40181
AAUR290340 ncbi Arthrobacter aurescens TC11
AAEO224324 ncbi Aquifex aeolicus VF50


Names of the homologs of the genes in the group in each of these orgs
  G7746   EG11578   EG10672   EG10269   
WSUC273121
WPIP955 WD_0654
WPIP80849 WB_0483
UURE95667 UU029
UURE95664 UUR10_0029
UPAR505682 UPA3_0029
UMET351160
TWHI218496
TWHI203267
TVOL273116
TTHE300852
TTHE262724
TTEN273068 TTE0481
TSP28240 TRQ2_1128
TROS309801
TPET390874 TPET_1002
TPEN368408
TPAL243276 TP_0924
TMAR243274 TM_1706
TLET416591 TLET_0519
TKOD69014
TFUS269800 TFU_0100
TERY203124
TELO197221
TDEN243275 TDE_1012
TCRU317025 TCR_0515
TACI273075
SWOL335541
STOK273063
STHE322159 STER_0716
STHE299768 STR0663
STHE264199 STU0663
SSUI391296 SSU98_1623
SSUI391295 SSU05_1612
SSP387093 SUN_0722
SSP321332 CYB_2561
SSP321327 CYA_1392
SSP1148
SSOL273057
SSAP342451 SSP0815
SPYO370554 MGAS10750_SPY0502
SPYO370553 MGAS2096_SPY0493
SPYO370552 MGAS10270_SPY0474
SPYO370551 MGAS9429_SPY0472
SPYO319701 M28_SPY0461
SPYO293653 M5005_SPY0480
SPYO286636 M6_SPY0504
SPYO198466 SPYM3_0409
SPYO193567 SPS1446
SPYO186103 SPYM18_0648
SPYO160490 SPY0580
SPNE488221 SP70585_0946
SPNE487214 SPH_1014
SPNE487213 SPT_1293
SPNE171101 SPR0808
SPNE170187 SPN03082
SPNE1313 SPJ_0847
SMUT210007 SMU_751
SMAR399550
SHAE279808 SH0968
SGOR29390 SGO_0792
SERY405948 SACE_5346
SEPI176280 SE_1667
SEPI176279 SERP1676
SELO269084
SCO SCO6743
SAVE227882 SAV1669
SAUR93062 SACOL2053
SAUR93061 SAOUHSC_02297
SAUR426430 NWMN_1969
SAUR418127 SAHV_2048
SAUR367830 SAUSA300_2021
SAUR359787 SAURJH1_2137
SAUR359786 SAURJH9_2100
SAUR282459 SAS1968
SAUR282458 SAR2151
SAUR273036 SAB1948C
SAUR196620 MW1987
SAUR158879 SA1868
SAUR158878 SAV2063
SARE391037 SARE_1703
SAGA211110 GBS0754
SAGA208435 SAG_0732
SAGA205921 SAK_0858
SACI56780
SACI330779
RSP101510 RHA1_RO06540
RSAL288705
RCAN293613 A1E_05510
RALB246199 GRAORF_3776
PTOR263820
PTHE370438 PTH_0245
PSP117 RB3313
PRUM264731 GFRORF0600
PPEN278197 PEPE_1521
PMOB403833 PMOB_1181
PMAR93060
PMAR74546
PMAR59920
PMAR167555
PMAR167546
PMAR167542
PMAR167540
PMAR167539
PMAR146891
PLUT319225
PISL384616
PINT246198 PIN_A1705
PHOR70601
PGIN242619
PFUR186497
PDIS435591 BDI_1372
PCAR338963 PCAR_0908
PAST100379
PARS340102
PAER178306
PACN267747
PABY272844
OTSU357244
NWIN323098 NWI_2517
NSP387092 NIS_1313
NSP35761
NSP103690 ALR5249
NSEN222891 NSE_0669
NPHA348780
NOCE323261 NOC_1303
NFAR247156 NFA41490
MVAN350058 MVAN_3200
MTUB419947
MTUB336982
MTHE349307
MTHE264732
MTHE187420
MTBRV
MTBCDC
MSYN262723 MS53_0548
MSTA339860 MSP_0920
MSP189918 MKMS_3465
MSP164757 MJLS_3413
MSP164756 MMCS_3402
MSME246196 MSMEG_2839
MSED399549
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAZ192952
MMAR444158 MMARC6_1540
MMAR426368 MMARC7_0379
MMAR402880 MMARC5_0457
MMAR368407
MMAR267377 MMP1127
MLEP272631
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGIL350054 MFLV_3444
MGEN243273
MFLO265311
MCAP340047
MBUR259564
MBOV410289
MBOV233413
MBAR269797
MAVI243243
MART243272 MART0664
MAER449447 MAE_22160
MAEO419665
MACE188937
MABS561007 MAB_1549C
LXYL281090
LWEL386043 LWE0881
LSPH444177 BSPH_4294
LSAK314315 LSA1566
LREU557436 LREU_0286
LPNE297246 LPP2891
LPNE297245 LPL2746
LPNE272624 LPG2834
LPLA220668 LP_0569
LMON265669 LMOF2365_0917
LMON169963 LMO0898
LLAC272623 L84502
LLAC272622 LACR_0319
LJOH257314 LJ_1622
LINT363253 LI0307
LINT267671
LINT189518
LINN272626 LIN0897
LHEL405566 LHV_0223
LGAS324831 LGAS_1389
LDEL390333 LDB0290
LDEL321956 LBUL_0244
LCAS321967 LSEI_1240
LBRE387344 LVIS_0546
LBOR355277
LBOR355276
LBIF456481
LBIF355278
LACI272621 LBA0206
KRAD266940
IHOS453591
HWAL362976
HSP64091
HSAL478009
HPYL85963 JHP0800
HPYL357544 HPAG1_0849
HPY HP0866
HMUK485914
HMOD498761 HM1_0392
HMAR272569
HHEP235279
HBUT415426
HACI382638 HAC_1229
GVIO251221 GLR4144
GFOR411154
FTUL458234 FTA_1559
FTUL418136 FTW_1479
FTUL401614 FTN_0665
FTUL393115 FTF1313C
FTUL393011 FTH_1428
FTUL351581 FTL_1474
FSP1855 FRANEAN1_6672
FSP106370 FRANCCI3_0217
FRANT GREA
FPHI484022 FPHI_0156
FNUC190304 FN0065
FNOD381764
FMAG334413 FMG_1448
FJOH376686 FJOH_1021
FALN326424 FRAAL0492
ERUM302409
ERUM254945
EFAE226185 EF_1312
ECHA205920
ECAN269484 ECAJ_0084
DSP255470
DSP216389
DRAD243230
DPSY177439
DGEO319795
DETH243164
DDES207559 DDE_2316
CVES412965
CTRA471473
CTRA471472
CTET212717 CTC_00330
CTEP194439
CSUL444179
CRUT413404
CPRO264201 PC0974
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CMUR243161
CMIC443906 CMM_2335
CMIC31964 CMS2515
CMET456442
CMAQ397948
CKOR374847
CKLU431943 CKL_3612
CJEJ407148
CJEJ360109
CJEJ354242
CJEJ195099
CJEJ192222
CJEI306537 JK1185
CHYD246194 CHY_2567
CHUT269798 CHU_2338
CHOM360107 CHAB381_1310
CGLU196627 CG2241
CFET360106
CFEL264202
CEFF196164 CE1939
CDIP257309 DIP1528
CDIF272563 CD0145
CDES477974
CCUR360105 CCV52592_1653
CCON360104 CCC13826_1577
CCHL340177
CCAV227941
CBOT508765 CLL_A0526
CBOT498213 CLD_0604
CBOT441772 CLI_0239
CBOT441771 CLC_0230
CBOT441770 CLB_0216
CBOT36826 CBO0177
CBLO291272 BPEN_099
CBLO203907 BFL096
CBEI290402 CBEI_0439
CACE272562 CAC2842
CABO218497
BWEI315730 BCERKBAB4_0233
BTUR314724
BTHU412694 BALH_0240
BTHU281309 BT9727_0227
BTHE226186 BT_1238
BSUB BSU04780
BSP107806 BU384
BPUM315750 BPUM_0448
BLON206672 BL0992
BLIC279010 BL02210
BHER314723
BGAR290434
BFRA295405 BF1806
BFRA272559 BF1871
BCIC186490 BCI_0640
BCER288681 BCE33L0229
BCER226900 BC_0267
BBUR224326
BAPH372461
BAPH198804 BUSG371
BANT592021 BAA_0282
BANT568206 BAMEG_0284
BANT261594 GBAA0255
BANT260799 BAS0241
BAFZ390236
AYEL322098
AVAR240292 AVA_1534
AURANTIMONAS
APHA212042 APH_1333
APER272557
ANAE240017
AMET293826 AMET_0799
AMAR329726 AM1_4121
AMAR234826
ALAI441768 ACL_1339
AFUL224325
ACEL351607
ABUT367737 ABU_2017
AAUR290340 AAUR_1113
AAEO224324


Organism features enriched in list (features available for 317 out of the 337 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00052336492
Arrangment:Clusters 0.00039001617
Disease:Pharyngitis 0.007335188
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 0.00113321111
Disease:Wide_range_of_infections 0.00113321111
Disease:bronchitis_and_pneumonitis 0.007335188
Endospores:No 1.274e-17163211
GC_Content_Range4:0-40 6.504e-26175213
GC_Content_Range4:40-60 8.564e-794224
GC_Content_Range4:60-100 1.658e-948145
GC_Content_Range7:0-30 0.00005983847
GC_Content_Range7:30-40 4.839e-19137166
GC_Content_Range7:50-60 4.808e-1128107
GC_Content_Range7:60-70 1.216e-1139134
Genome_Size_Range5:0-2 1.563e-24136155
Genome_Size_Range5:2-4 0.0053952120197
Genome_Size_Range5:4-6 1.197e-2246184
Genome_Size_Range5:6-10 0.00069081547
Genome_Size_Range9:0-1 4.229e-82727
Genome_Size_Range9:1-2 1.278e-16109128
Genome_Size_Range9:2-3 0.000094183120
Genome_Size_Range9:4-5 1.360e-102496
Genome_Size_Range9:5-6 1.045e-92288
Genome_Size_Range9:6-8 0.00020891038
Gram_Stain:Gram_Neg 1.056e-36108333
Gram_Stain:Gram_Pos 3.980e-21129150
Habitat:Multiple 0.001260781178
Habitat:Specialized 0.00018314153
Motility:No 2.390e-14121151
Motility:Yes 2.594e-10108267
Optimal_temp.:30-37 0.00001381818
Oxygen_Req:Aerobic 0.000895884185
Oxygen_Req:Anaerobic 2.736e-778102
Oxygen_Req:Facultative 0.000729992201
Shape:Coccus 2.065e-86782
Shape:Irregular_coccus 0.00002601717
Shape:Rod 1.670e-20135347
Shape:Sphere 0.00012311819
Shape:Spiral 0.00001463034
Temp._range:Hyperthermophilic 5.621e-72323
Temp._range:Mesophilic 0.0016188244473
Temp._range:Psychrophilic 0.008793019
Temp._range:Thermophilic 0.00258352735



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951590.7553
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)1491330.7217
TYRFUMCAT-PWY (tyrosine degradation I)1841460.6935
PWY-5918 (heme biosynthesis I)2721770.6692
GLYCOCAT-PWY (glycogen degradation I)2461650.6493
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251570.6487
PWY-4041 (γ-glutamyl cycle)2791760.6456
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3001820.6401
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2861770.6364
PWY-5148 (acyl-CoA hydrolysis)2271530.6140
PWY-5028 (histidine degradation II)1301100.6090
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2911740.6041
GLUTATHIONESYN-PWY (glutathione biosynthesis)3391880.6017
PWY-1269 (CMP-KDO biosynthesis I)3251840.6015
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2961750.5999
CHOLINE-BETAINE-ANA-PWY (choline degradation I)1351110.5964
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181470.5954
BETSYN-PWY (glycine betaine biosynthesis I (Gram-negative bacteria))1381120.5925
AST-PWY (arginine degradation II (AST pathway))1201030.5922
PWY-5857 (ubiquinone-10 biosynthesis (prokaryotic))1831320.5894
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2901710.5853
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491570.5844
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491570.5844
GALACTCAT-PWY (D-galactonate degradation)104920.5684
PWY-5855 (ubiquinone-7 biosynthesis (prokaryotic))1911320.5640
NAGLIPASYN-PWY (lipid IVA biosynthesis)3481850.5633
PWY0-541 (cyclopropane fatty acid (CFA) biosynthesis)3001710.5632
PWY-5913 (TCA cycle variation IV)3011710.5610
PWY0-845 (superpathway of pyridoxal 5'-phosphate biosynthesis and salvage)3291780.5514
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)1761240.5506
P344-PWY (acrylonitrile degradation)2101370.5447
PWY-5856 (ubiquinone-9 biosynthesis (prokaryotic))2551530.5408
GDPRHAMSYN-PWY (GDP-D-rhamnose biosynthesis)1561140.5402
GLUCONSUPER-PWY (D-gluconate degradation)2291420.5287
PWY0-1335 (NADH to cytochrome bo oxidase electron transfer)112910.5209
PWY0-1329 (succinate to cytochrome bo oxidase electron transfer)96820.5136
ECASYN-PWY (enterobacterial common antigen biosynthesis)1911250.5109
GALACTITOLCAT-PWY (galactitol degradation)73690.5107
REDCITCYC (TCA cycle variation II)1741180.5105
PWY-6087 (4-chlorocatechol degradation)2231370.5085
PWY-46 (putrescine biosynthesis III)1381020.5082
GALACTARDEG-PWY (D-galactarate degradation I)1511070.5013
GLUCARDEG-PWY (D-glucarate degradation I)1521070.4977
LIPASYN-PWY (phospholipases)2121300.4873
4AMINOBUTMETAB-PWY (superpathway of 4-aminobutyrate degradation)2121300.4873
VALDEG-PWY (valine degradation I)2901570.4871
UBISYN-PWY (ubiquinol-8 biosynthesis (prokaryotic))3981870.4870
PWY0-981 (taurine degradation IV)106840.4840
SULFATE-CYS-PWY (superpathway of sulfate assimilation and cysteine biosynthesis)3651780.4817
PWY-561 (superpathway of glyoxylate cycle)1621090.4792
PWY-6193 (3-chlorocatechol degradation II (ortho))1941220.4792
PWY-2361 (3-oxoadipate degradation)82710.4784
GLYOXYLATE-BYPASS (glyoxylate cycle)1691110.4719
SO4ASSIM-PWY (sulfate reduction I (assimilatory))3111610.4696
DAPLYSINESYN-PWY (lysine biosynthesis I)3421700.4694
PWY-3162 (tryptophan degradation V (side chain pathway))94760.4654
PLPSAL-PWY (pyridoxal 5'-phosphate salvage pathway)3741780.4650
GLUCARGALACTSUPER-PWY (superpathway of D-glucarate and D-galactarate degradation)135950.4606
P601-PWY (D-camphor degradation)95760.4604
PWY-5340 (sulfate activation for sulfonation)3851800.4593
PWY-1501 (mandelate degradation I)73640.4563
PWY-5386 (methylglyoxal degradation I)3051570.4544
PYRIDOXSYN-PWY (pyridoxal 5'-phosphate biosynthesis I)4221880.4537
PHENYLALANINE-DEG1-PWY (phenylalanine degradation I (aerobic))2891510.4473
PWY-6268 (adenosylcobalamin salvage from cobalamin)3171590.4430
PWY-5964 (molybdopterin guanine dinucleotide biosynthesis)2901500.4381
4-HYDROXYMANDELATE-DEGRADATION-PWY (4-hydroxymandelate degradation)102770.4368
PWY-5025 (IAA biosynthesis IV)92720.4360
PWY-5669 (phosphatidylethanolamine biosynthesis I)4161840.4340
PWY0-862 (cis-dodecenoyl biosynthesis)3431650.4323
PWY-5755 (4-hydroxybenzoate biosynthesis II (bacteria and fungi))81660.4321
PWY-5084 (2-ketoglutarate dehydrogenase complex)3261600.4315
PWY-4221 (pantothenate and coenzymeA biosynthesis II)112810.4298
PWY0-1353 (succinate to cytochrome bd oxidase electron transfer)1781090.4279
GLUT-REDOX-PWY (glutathione redox reactions II)2461340.4275
GLYSYN-THR-PWY (glycine biosynthesis IV)2151230.4275
PWY0-1337 (oleate β-oxidation)1991170.4271
P184-PWY (protocatechuate degradation I (meta-cleavage pathway))94720.4263
PWY-5188 (tetrapyrrole biosynthesis I)4391880.4256
PWY-3941 (β-alanine biosynthesis II)117820.4181
KDOSYN-PWY (KDO transfer to lipid IVA I)1801080.4141
GLUTAMINDEG-PWY (glutamine degradation I)1911120.4123
PWY-6134 (tyrosine biosynthesis IV)89680.4111
KDO-NAGLIPASYN-PWY (superpathway of KDO2-lipid A biosynthesis)1791070.4094
PWY0-1313 (acetate conversion to acetyl-CoA)3851730.4089
METSYN-PWY (homoserine and methionine biosynthesis)3971760.4087
PWY-6089 (3-chlorocatechol degradation I (ortho))102740.4084
PWY0-1182 (trehalose degradation II (trehalase))70580.4083
PWY1-3 (polyhydroxybutyrate biosynthesis)115800.4083
2ASDEG-PWY (orthanilate degradation)72590.4077
P381-PWY (adenosylcobalamin biosynthesis II (late cobalt incorporation))3711690.4064
ARGSYNBSUB-PWY (arginine biosynthesis II (acetyl cycle))3831720.4054
CATECHOL-ORTHO-CLEAVAGE-PWY (catechol degradation to β-ketoadipate)103740.4040
PWY-81 (toluene degradation to benzoyl-CoA (anaerobic))67560.4039
MET-SAM-PWY (superpathway of S-adenosyl-L-methionine biosynthesis)3921740.4033
THREONINE-DEG2-PWY (threonine degradation II)2141190.4007



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG11578   EG10672   EG10269   
G77460.9990820.9993880.999257
EG115780.9988470.998761
EG106720.999811
EG10269



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PAIRWISE BLAST SCORES:

  G7746   EG11578   EG10672   EG10269   
G77460.0f0---
EG11578-0.0f0--
EG10672--0.0f0-
EG10269---0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10269 EG10672 EG11578 G7746 (centered at EG11578)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7746   EG11578   EG10672   EG10269   
384/623273/623232/623215/623
AAUR290340:2:Tyes0---
AAVE397945:0:Tyes1806196510
ABAC204669:0:Tyes-1210-
ABAU360910:0:Tyes14948610
ABOR393595:0:Tyes0223445
ABUT367737:0:Tyes0---
ACAU438753:0:Tyes0-643920
ACRY349163:8:Tyes-5713320
ADEH290397:0:Tyes-0238-
AEHR187272:0:Tyes32482501
AFER243159:0:Tyes-0650511
AHYD196024:0:Tyes0123
ALAI441768:0:Tyes0---
AMAR329726:9:Tyes0---
AMET293826:0:Tyes0---
AORE350688:0:Tyes2443-0-
APHA212042:0:Tyes-0--
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