CANDIDATE ID: 1051

CANDIDATE ID: 1051

NUMBER OF GENES: 4
AVERAGE SCORE:    9.9899750e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7744 (hslO) (b3401)
   Products of gene:
     - G7744-MONOMER (molecular chaperone Hsp33)

- EG10688 (pck) (b3403)
   Products of gene:
     - PEPCARBOXYKIN-MONOMER (phosphoenolpyruvate carboxykinase (ATP))
       Reactions:
        oxaloacetate + ATP  ->  CO2 + phosphoenolpyruvate + ADP + H+
         In pathways
         GLUCONEO-PWY (gluconeogenesis I)
         PWY-561 (PWY-561)

- EG10672 (ompR) (b3405)
   Products of gene:
     - OMPR-MONOMER (OmpR)
       Regulatees:
        TU0-8762 (omrB)
        TU0-8763 (omrA)
        TU0-8473 (tppB)
        TU0-14682 (ecnB)
        TU0-3901 (sra)
        TU00136 (flhDC)
        TU00392 (csgDEFG)
        TU0-2644 (micF)
        TU356 (nmpC)
        TU00386 (bolA)
        TU00050 (ompF)
        TU00049 (ompC)
        TU00080 (fadL)
     - PHOSPHO-OMPR-MONOMER (OmpR-Phosphorylated)
     - PHOSPHO-OMPR (OmpR-Phosphorylated transcriptional dual regulator)
       Regulatees:
        TU0-14682 (ecnB)
        TU0-3901 (sra)
        TU00136 (flhDC)
        TU00392 (csgDEFG)
        TU0-2644 (micF)
        TU356 (nmpC)
        TU00386 (bolA)
        TU00050 (ompF)
        TU00049 (ompC)
        TU00080 (fadL)

- EG10269 (envZ) (b3404)
   Products of gene:
     - PHOSPHO-ENVZ (EnvZ sensory histidine kinase - phosphorylated)
     - ENVZ-MONOMER (EnvZ)
       Regulatees:
     - ENVZ-CPLX (EnvZ sensory histidine kinase)



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ORGANISMS CONTAINING AT LEAST 3 GENES FROM THE GROUP:

Total number of orgs: 205
Effective number of orgs (counting one per cluster within 468 clusters): 145

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317584
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329534
YPES386656 ncbi Yersinia pestis Pestoides F4
YPES377628 ncbi Yersinia pestis Nepal5164
YPES360102 ncbi Yersinia pestis Antiqua4
YPES349746 ncbi Yersinia pestis Angola4
YPES214092 ncbi Yersinia pestis CO924
YPES187410 ncbi Yersinia pestis KIM 104
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80814
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A3
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110183
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103313
XCAM487884 Xanthomonas campestris pv. paulliniae3
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-103
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80043
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339133
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3063
XAUT78245 ncbi Xanthobacter autotrophicus Py24
VVUL216895 ncbi Vibrio vulnificus CMCP64
VVUL196600 ncbi Vibrio vulnificus YJ0164
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106334
VFIS312309 ncbi Vibrio fischeri ES1144
VCHO345073 ncbi Vibrio cholerae O3954
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169614
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB43
TSP1755 Thermoanaerobacter sp.3
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252593
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT24
SSP94122 ncbi Shewanella sp. ANA-34
SSP84588 ncbi Synechococcus sp. WH 81023
SSP64471 ncbi Synechococcus sp. CC93113
SSP644076 Silicibacter sp. TrichCH4B4
SSP292414 ncbi Ruegeria sp. TM10404
SSP1131 Synechococcus sp. CC96053
SSON300269 ncbi Shigella sonnei Ss0464
SSED425104 ncbi Shewanella sediminis HAW-EB34
SPRO399741 ncbi Serratia proteamaculans 5684
SPEA398579 ncbi Shewanella pealeana ATCC 7003454
SONE211586 ncbi Shewanella oneidensis MR-14
SMEL266834 ncbi Sinorhizobium meliloti 10214
SMED366394 ncbi Sinorhizobium medicae WSM4194
SLOI323850 ncbi Shewanella loihica PV-44
SLAC55218 Ruegeria lacuscaerulensis4
SHIGELLA ncbi Shigella flexneri 2a str. 2457T4
SHAL458817 ncbi Shewanella halifaxensis HAW-EB44
SGLO343509 ncbi Sodalis glossinidius morsitans4
SFLE373384 ncbi Shigella flexneri 5 str. 84014
SFLE198214 ncbi Shigella flexneri 2a str. 3014
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4764
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B674
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91504
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT184
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty24
SDYS300267 ncbi Shigella dysenteriae Sd1974
SDEN318161 ncbi Shewanella denitrificans OS2174
SBOY300268 ncbi Shigella boydii Sb2274
SBAL402882 ncbi Shewanella baltica OS1854
SBAL399599 ncbi Shewanella baltica OS1954
SALA317655 ncbi Sphingopyxis alaskensis RB22564
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170254
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170294
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.14
RSOL267608 ncbi Ralstonia solanacearum GMI10003
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111703
RPOM246200 ncbi Ruegeria pomeroyi DSS-34
RPAL316058 ncbi Rhodopseudomonas palustris HaA24
RPAL316057 ncbi Rhodopseudomonas palustris BisB53
RPAL316056 ncbi Rhodopseudomonas palustris BisB184
RPAL316055 ncbi Rhodopseudomonas palustris BisA534
RPAL258594 ncbi Rhodopseudomonas palustris CGA0094
RMET266264 ncbi Ralstonia metallidurans CH343
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38414
RFER338969 ncbi Rhodoferax ferrireducens T1183
REUT381666 ncbi Ralstonia eutropha H163
REUT264198 ncbi Ralstonia eutropha JMP1343
RETL347834 ncbi Rhizobium etli CFN 424
RDEN375451 ncbi Roseobacter denitrificans OCh 1144
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30004
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a4
PSTU379731 ncbi Pseudomonas stutzeri A15014
PSP56811 Psychrobacter sp.3
PSP296591 ncbi Polaromonas sp. JS6663
PPUT76869 ncbi Pseudomonas putida GB-14
PPUT351746 ncbi Pseudomonas putida F14
PPUT160488 ncbi Pseudomonas putida KT24403
PPRO298386 ncbi Photobacterium profundum SS94
PNAP365044 ncbi Polaromonas naphthalenivorans CJ23
PMEN399739 ncbi Pseudomonas mendocina ymp4
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO14
PING357804 ncbi Psychromonas ingrahamii 374
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1254
PFLU220664 ncbi Pseudomonas fluorescens Pf-54
PFLU216595 ncbi Pseudomonas fluorescens SBW254
PFLU205922 ncbi Pseudomonas fluorescens Pf0-14
PENT384676 ncbi Pseudomonas entomophila L484
PCRY335284 ncbi Psychrobacter cryohalolentis K53
PATL342610 ncbi Pseudoalteromonas atlantica T6c4
PARC259536 ncbi Psychrobacter arcticus 273-43
PAER208964 ncbi Pseudomonas aeruginosa PAO14
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA144
OCAR504832 ncbi Oligotropha carboxidovorans OM54
OANT439375 ncbi Ochrobactrum anthropi ATCC 491884
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2553
NHAM323097 ncbi Nitrobacter hamburgensis X144
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124444
MSP409 Methylobacterium sp.4
MSP400668 ncbi Marinomonas sp. MWYL14
MSP266779 ncbi Chelativorans sp. BNC14
MPET420662 ncbi Methylibium petroleiphilum PM13
MMAR394221 ncbi Maricaulis maris MCS103
MMAG342108 ncbi Magnetospirillum magneticum AMB-13
MLOT266835 ncbi Mesorhizobium loti MAFF3030994
MFLA265072 ncbi Methylobacillus flagellatus KT3
MEXT419610 ncbi Methylobacterium extorquens PA14
MCAP243233 ncbi Methylococcus capsulatus Bath3
MAQU351348 ncbi Marinobacter aquaeolei VT83
MAER449447 ncbi Microcystis aeruginosa NIES-8433
LCHO395495 ncbi Leptothrix cholodnii SP-63
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785784
JSP375286 ncbi Janthinobacterium sp. Marseille3
JSP290400 ncbi Jannaschia sp. CCS14
ILOI283942 ncbi Idiomarina loihiensis L2TR4
HNEP81032 Hyphomonas neptunium3
HCHE349521 ncbi Hahella chejuensis KCTC 23964
HARS204773 ncbi Herminiimonas arsenicoxydans3
GOXY290633 ncbi Gluconobacter oxydans 621H3
GBET391165 ncbi Granulibacter bethesdensis CGDNIH13
ESP42895 Enterobacter sp.4
ELIT314225 ncbi Erythrobacter litoralis HTCC25943
EFER585054 ncbi Escherichia fergusonii ATCC 354694
ECOO157 ncbi Escherichia coli O157:H7 EDL9334
ECOL83334 Escherichia coli O157:H74
ECOL585397 ncbi Escherichia coli ED1a4
ECOL585057 ncbi Escherichia coli IAI394
ECOL585056 ncbi Escherichia coli UMN0264
ECOL585055 ncbi Escherichia coli 559894
ECOL585035 ncbi Escherichia coli S884
ECOL585034 ncbi Escherichia coli IAI14
ECOL481805 ncbi Escherichia coli ATCC 87394
ECOL469008 ncbi Escherichia coli BL21(DE3)4
ECOL439855 ncbi Escherichia coli SMS-3-54
ECOL413997 ncbi Escherichia coli B str. REL6064
ECOL409438 ncbi Escherichia coli SE114
ECOL405955 ncbi Escherichia coli APEC O14
ECOL364106 ncbi Escherichia coli UTI894
ECOL362663 ncbi Escherichia coli 5364
ECOL331111 ncbi Escherichia coli E24377A4
ECOL316407 ncbi Escherichia coli K-12 substr. W31104
ECOL199310 ncbi Escherichia coli CFT0734
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10434
DSHI398580 ncbi Dinoroseobacter shibae DFL 124
DHAF138119 ncbi Desulfitobacterium hafniense Y513
DARO159087 ncbi Dechloromonas aromatica RCB3
CVIO243365 ncbi Chromobacterium violaceum ATCC 124723
CSP78 Caulobacter sp.3
CSP501479 Citreicella sp. SE454
CSAL290398 ncbi Chromohalobacter salexigens DSM 30434
CPSY167879 ncbi Colwellia psychrerythraea 34H4
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1113
CBUR360115 ncbi Coxiella burnetii RSA 3313
CBUR227377 ncbi Coxiella burnetii RSA 4933
CAULO ncbi Caulobacter crescentus CB153
BVIE269482 ncbi Burkholderia vietnamiensis G43
BTHA271848 ncbi Burkholderia thailandensis E2643
BSUI470137 ncbi Brucella suis ATCC 234453
BSUI204722 ncbi Brucella suis 13304
BSP376 Bradyrhizobium sp.4
BSP36773 Burkholderia sp.3
BPSE320373 ncbi Burkholderia pseudomallei 6683
BPSE320372 ncbi Burkholderia pseudomallei 1710b3
BPSE272560 ncbi Burkholderia pseudomallei K962433
BPET94624 Bordetella petrii3
BPER257313 ncbi Bordetella pertussis Tohama I3
BPAR257311 ncbi Bordetella parapertussis 128223
BMEL359391 ncbi Brucella melitensis biovar Abortus 23083
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M4
BMAL320389 ncbi Burkholderia mallei NCTC 102473
BMAL320388 ncbi Burkholderia mallei SAVP13
BMAL243160 ncbi Burkholderia mallei ATCC 233443
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1104
BCER572264 ncbi Bacillus cereus 03BB1023
BCER405917 Bacillus cereus W3
BCER315749 ncbi Bacillus cytotoxicus NVH 391-983
BCEN331272 ncbi Burkholderia cenocepacia HI24243
BCEN331271 ncbi Burkholderia cenocepacia AU 10543
BCAN483179 ncbi Brucella canis ATCC 233654
BBRO257310 ncbi Bordetella bronchiseptica RB503
BAMY326423 ncbi Bacillus amyloliquefaciens FZB423
BAMB398577 ncbi Burkholderia ambifaria MC40-63
BAMB339670 ncbi Burkholderia ambifaria AMMD3
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9413
ASP76114 ncbi Aromatoleum aromaticum EbN13
ASP62977 ncbi Acinetobacter sp. ADP13
ASP62928 ncbi Azoarcus sp. BH723
ASP232721 ncbi Acidovorax sp. JS423
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4494
AORE350688 ncbi Alkaliphilus oremlandii OhILAs3
AHYD196024 Aeromonas hydrophila dhakensis4
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232703
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-14
ACRY349163 ncbi Acidiphilium cryptum JF-54
ACAU438753 ncbi Azorhizobium caulinodans ORS 5714
ABOR393595 ncbi Alcanivorax borkumensis SK24
ABAU360910 ncbi Bordetella avium 197N3
AAVE397945 ncbi Acidovorax citrulli AAC00-13


Names of the homologs of the genes in the group in each of these orgs
  G7744   EG10688   EG10672   EG10269   
YPSE349747 YPSIP31758_3977YPSIP31758_3978YPSIP31758_3980YPSIP31758_3979
YPSE273123 YPTB3761YPTB3762YPTB3764YPTB3763
YPES386656 YPDSF_0066YPDSF_0065YPDSF_0063YPDSF_0064
YPES377628 YPN_3926YPN_3927YPN_3929YPN_3928
YPES360102 YPA_3330YPA_3331YPA_3333YPA_3332
YPES349746 YPANGOLA_A3738YPANGOLA_A3739YPANGOLA_A3741YPANGOLA_A3740
YPES214092 YPO0139YPO0138YPO0136YPO0137
YPES187410 Y3919Y3918Y3916Y3917
YENT393305 YE3985YE3986YE4004YE4005
XORY360094 XOOORF_3197XOOORF_1023XOOORF_1017
XORY342109 XOO1708XOO3651XOO3658
XORY291331 XOO1807XOO3870XOO3875
XCAM487884 XCC-B100_1289XCC-B100_0803XCC-B100_0802
XCAM316273 XCAORF_3242XCAORF_3731XCAORF_3732
XCAM314565 XC_1243XC_0770XC_0769
XCAM190485 XCC2865XCC3394XCC3395
XAXO190486 XAC3048XAC0730XAC0729
XAUT78245 XAUT_1220XAUT_2843XAUT_2423XAUT_2156
VVUL216895 VV1_0880VV1_0881VV1_0858VV1_0857
VVUL196600 VV0208VV0207VV0236VV0237
VPAR223926 VP0130VP0129VP0154VP0155
VFIS312309 VF2477VF2478VF0114VF0115
VCHO345073 VC0395_A2309VC0395_A2310VC0395_A2286VC0395_A2285
VCHO VC2736VC2738VC2714VC2713
TTEN273068 TTE1737TTE1783TTE0481
TSP1755 TETH514_2063TETH514_1285TETH514_0439
TDEN292415 TBD_0750TBD_2354TBD_2353
STYP99287 STM3498STM3500STM3502STM3501
SSP94122 SHEWANA3_0148SHEWANA3_0147SHEWANA3_4017SHEWANA3_4018
SSP84588 SYNW1153OR3438SYNW0808OR1888SYNW0807OR1889
SSP64471 GSYN1376GSYN1334GSYN1335
SSP644076 SCH4B_3213SCH4B_2603SCH4B_3250SCH4B_2157
SSP292414 TM1040_2889TM1040_2442TM1040_2924TM1040_1479
SSP1131 SYNCC9605_1282SYNCC9605_1839SYNCC9605_1840
SSON300269 SSO_3532SSO_3534SSO_3536SSO_3535
SSED425104 SSED_4361SSED_4362SSED_0168SSED_0167
SPRO399741 SPRO_4616SPRO_2098SPRO_4621SPRO_4620
SPEA398579 SPEA_0141SPEA_0140SPEA_4017SPEA_4018
SONE211586 SO_0163SO_0162SO_4633SO_4634
SMEL266834 SMC02136SMC02562SMB21561SMC01595
SMED366394 SMED_0129SMED_3253SMED_6320SMED_2246
SLOI323850 SHEW_3622SHEW_3623SHEW_3637SHEW_3638
SLAC55218 SL1157_1109SL1157_1901SL1157_0971SL1157_2732
SHIGELLA YRFIPCKAOMPRENVZ
SHAL458817 SHAL_4177SHAL_4178SHAL_0240SHAL_0239
SGLO343509 SG2316SG2317SG2319SG2318
SFLE373384 SFV_3406SFV_3408SFV_3410SFV_3409
SFLE198214 AAN44880.1AAN44883.1AAN44885.1AAN44884.1
SENT454169 SEHA_C3804SEHA_C3807SEHA_C3809SEHA_C3808
SENT321314 SCH_3430SCH_3432SCH_3434SCH_3433
SENT295319 SPA3363SPA3365SPA3367SPA3366
SENT220341 STY4298STY4296STY4294STY4295
SENT209261 T4008T4006T4004T4005
SDYS300267 SDY_3677SDY_3673SDY_3671SDY_3672
SDEN318161 SDEN_0118SDEN_0117SDEN_3538SDEN_3539
SBOY300268 SBO_3388SBO_3390SBO_3392SBO_3391
SBAL402882 SHEW185_0146SHEW185_0145SHEW185_4206SHEW185_4207
SBAL399599 SBAL195_0150SBAL195_0149SBAL195_4338SBAL195_4339
SALA317655 SALA_1357SALA_2046SALA_0758SALA_0759
RSPH349102 RSPH17025_2645RSPH17025_2566RSPH17025_2788RSPH17025_1442
RSPH349101 RSPH17029_2868RSPH17029_0313RSPH17029_2799RSPH17029_1836
RSPH272943 RSP_1207RSP_1680RSP_1138RSP_0203
RSOL267608 RSC1132RSC1648RSC1647
RRUB269796 RRU_A3275RRU_A1282RRU_A2226
RPOM246200 SPO_0024SPO_0709SPO_0251SPO_2173
RPAL316058 RPB_0785RPB_0461RPB_1961RPB_1960
RPAL316057 RPD_0897RPD_0365RPD_3883
RPAL316056 RPC_4914RPC_0599RPC_4654RPC_1385
RPAL316055 RPE_4882RPE_0819RPE_4656RPE_1426
RPAL258594 RPA4771RPA0360RPA3570RPA4367
RMET266264 RMET_1058RMET_1947RMET_1948
RLEG216596 RL0551RL0037RL3599RL3453
RFER338969 RFER_2652RFER_2732RFER_2733
REUT381666 H16_A1191H16_A1463H16_A1462
REUT264198 REUT_A1094REUT_A1368REUT_A0391
RETL347834 RHE_CH00518RHE_CH00037RHE_PF00530RHE_CH03009
RDEN375451 RD1_0411RD1_1376RD1_0551RD1_2250
PSYR223283 PSPTO_0238PSPTO_0239PSPTO_0328PSPTO_0329
PSYR205918 PSYR_0169PSYR_0168PSYR_0258PSYR_0259
PSTU379731 PST_0292PST_0293PST_0286PST_0287
PSP56811 PSYCPRWF_2069PSYCPRWF_2121PSYCPRWF_0199
PSP296591 BPRO_3187BPRO_2713BPRO_2714
PPUT76869 PPUTGB1_0277PPUTGB1_0278PPUTGB1_0271PPUTGB1_0272
PPUT351746 PPUT_0267PPUT_0268PPUT_0261PPUT_0262
PPUT160488 PP_0252PP_0246PP_0247
PPRO298386 PBPRA3484PBPRA3485PBPRA0184PBPRA0185
PNAP365044 PNAP_1179PNAP_2546PNAP_2547
PMEN399739 PMEN_0367PMEN_0368PMEN_0359PMEN_0360
PLUM243265 PLU0099PLU0100PLU0212PLU0213
PING357804 PING_0094PING_0093PING_1375PING_2285
PHAL326442 PSHAA0229PSHAA0228PSHAA2850PSHAA2849
PFLU220664 PFL_0283PFL_0284PFL_0276PFL_0277
PFLU216595 PFLU0266PFLU0267PFLU0259PFLU0260
PFLU205922 PFL_0267PFL_0268PFL_0260PFL_0261
PENT384676 PSEEN0233PSEEN0234PSEEN0227PSEEN0228
PCRY335284 PCRYO_0333PCRYO_0135PCRYO_2323
PATL342610 PATL_0227PATL_2282PATL_0225PATL_0226
PARC259536 PSYC_0302PSYC_0126PSYC_2020
PAER208964 PA5193PA5192PA5200PA5199
PAER208963 PA14_68610PA14_68580PA14_68700PA14_68680
OCAR504832 OCAR_4656OCAR_7573OCAR_7090OCAR_7201
OANT439375 OANT_0396OANT_0829OANT_1644OANT_1643
NWIN323098 NWI_0134NWI_0350NWI_2517
NHAM323097 NHAM_0224NHAM_0445NHAM_3683NHAM_3136
NARO279238 SARO_3139SARO_2908SARO_0441SARO_2618
MSP409 M446_6534M446_0223M446_0852M446_0851
MSP400668 MMWYL1_3996MMWYL1_3504MMWYL1_4347MMWYL1_1563
MSP266779 MESO_0007MESO_3502MESO_4123MESO_4124
MPET420662 MPE_A2014MPE_A1574MPE_A1573
MMAR394221 MMAR10_0488MMAR10_1100MMAR10_0765
MMAG342108 AMB0318AMB0549AMB0548
MLOT266835 MLR5648MLR5096MLR2740MLR2667
MFLA265072 MFLA_1108MFLA_0654MFLA_0653
MEXT419610 MEXT_2009MEXT_1639MEXT_3772MEXT_3773
MCAP243233 MCA_2980MCA_0772MCA_0771
MAQU351348 MAQU_3753MAQU_3754MAQU_2321
MAER449447 MAE_53700MAE_06160MAE_22160
LCHO395495 LCHO_1163LCHO_1895LCHO_1894
KPNE272620 GKPORF_B3113GKPORF_B3114GKPORF_B3116GKPORF_B3115
JSP375286 MMA_1272MMA_1413MMA_1412
JSP290400 JANN_0079JANN_0535JANN_2014JANN_1833
ILOI283942 IL2029IL0273IL0320IL0321
HNEP81032 HNE_0594HNE_2705HNE_3094
HCHE349521 HCH_00562HCH_00561HCH_06085HCH_06084
HARS204773 HEAR2186HEAR1907HEAR1908
GOXY290633 GOX1235GOX1600GOX0120
GBET391165 GBCGDNIH1_2269GBCGDNIH1_0737GBCGDNIH1_2242
ESP42895 ENT638_3814ENT638_3816ENT638_3818ENT638_3817
ELIT314225 ELI_13925ELI_02140ELI_11920
EFER585054 EFER_3367EFER_3369EFER_3373EFER_3372
ECOO157 YRFIPCKAOMPRENVZ
ECOL83334 ECS4243ECS4245ECS4247ECS4246
ECOL585397 ECED1_4060ECED1_4063ECED1_4065ECED1_4064
ECOL585057 ECIAI39_3879ECIAI39_3881ECIAI39_3885ECIAI39_3884
ECOL585056 ECUMN_3859ECUMN_3862ECUMN_3864ECUMN_3863
ECOL585055 EC55989_3806EC55989_3809EC55989_3813EC55989_3812
ECOL585035 ECS88_3787ECS88_3790ECS88_3792ECS88_3791
ECOL585034 ECIAI1_3540ECIAI1_3544ECIAI1_3548ECIAI1_3547
ECOL481805 ECOLC_0312ECOLC_0310ECOLC_0308ECOLC_0309
ECOL469008 ECBD_0345ECBD_0342ECBD_0340ECBD_0341
ECOL439855 ECSMS35_3679ECSMS35_3682ECSMS35_3686ECSMS35_3685
ECOL413997 ECB_03253ECB_03255ECB_03257ECB_03256
ECOL409438 ECSE_3663ECSE_3666ECSE_3670ECSE_3669
ECOL405955 APECO1_3063APECO1_3061APECO1_3059APECO1_3060
ECOL364106 UTI89_C3899UTI89_C3903UTI89_C3905UTI89_C3904
ECOL362663 ECP_3487ECP_3489ECP_3491ECP_3490
ECOL331111 ECE24377A_3873ECE24377A_3877ECE24377A_3879ECE24377A_3878
ECOL316407 ECK3388:JW5692:B3401ECK3390:JW3366:B3403ECK3392:JW3368:B3405ECK3391:JW3367:B3404
ECOL199310 C4172C4176C4181C4180
ECAR218491 ECA4105ECA4106ECA4108ECA4107
DSHI398580 DSHI_3487DSHI_0213DSHI_3299DSHI_2498
DHAF138119 DSY2681DSY4203DSY4623
DARO159087 DARO_2748DARO_1980DARO_1979
CVIO243365 CV_2000CV_0216CV_0217
CSP78 CAUL_1234CAUL_3286CAUL_1586
CSP501479 CSE45_3400CSE45_4170CSE45_4111CSE45_1719
CSAL290398 CSAL_2658CSAL_2657CSAL_2418CSAL_2417
CPSY167879 CPS_4594CPS_4595CPS_4597CPS_4596
CBUR434922 COXBU7E912_2191COXBU7E912_2107COXBU7E912_2106
CBUR360115 COXBURSA331_A2217COXBURSA331_A0079COXBURSA331_A0080
CBUR227377 CBU_2092CBU_2006CBU_2005
CAULO CC2241CC1182CC1181
BVIE269482 BCEP1808_2183BCEP1808_1865BCEP1808_1866
BTHA271848 BTH_I1897BTH_I2094BTH_I2093
BSUI470137 BSUIS_A0329BSUIS_B0474BSUIS_A1579
BSUI204722 BR_0303BR_2089BR_A0474BR_A0473
BSP376 BRADO6776BRADO0741BRADO5703BRADO6042
BSP36773 BCEP18194_A5410BCEP18194_A5249BCEP18194_A5250
BPSE320373 BURPS668_2574BURPS668_2352BURPS668_2353
BPSE320372 BURPS1710B_A2942BURPS1710B_A1307BURPS1710B_A1308
BPSE272560 BPSL2267BPSL2094BPSL2095
BPET94624 BPET1805BPET1700BPET1699
BPER257313 BP2379BP3554BP3223
BPAR257311 BPP3245BPP3359BPP3360
BMEL359391 BAB1_0333BAB2_0762BAB1_1539
BMEL224914 BMEI1619BMEI2037BMEII0791BMEII0792
BMAL320389 BMA10247_1463BMA10247_1253BMA10247_1254
BMAL320388 BMASAVP1_A2190BMASAVP1_A1980BMASAVP1_A1981
BMAL243160 BMA_1687BMA_1485BMA_1486
BJAP224911 BLR1100BLL8141BLR6651BLR7462
BCER572264 BCA_0079BCA_4894BCA_0327
BCER405917 BCE_0065BCE_4916BCE_0294
BCER315749 BCER98_0062BCER98_3438BCER98_0264
BCEN331272 BCEN2424_2104BCEN2424_1938BCEN2424_1939
BCEN331271 BCEN_5973BCEN_6141BCEN_6140
BCAN483179 BCAN_A0309BCAN_A2135BCAN_A1557BCAN_B0475
BBRO257310 BB3697BB3810BB3811
BAMY326423 RBAM_000820RBAM_027580RBAM_035010
BAMB398577 BAMMC406_2014BAMMC406_1853BAMMC406_1854
BAMB339670 BAMB_2141BAMB_1926BAMB_1927
BABO262698 BRUAB1_0329BRUAB2_0748BRUAB1_1513
ASP76114 EBA6835EBA6497EBA6498
ASP62977 ACIAD0407ACIAD3388ACIAD3389
ASP62928 AZO1657AZO1709AZO1708
ASP232721 AJS_0994AJS_3153AJS_3154
ASAL382245 ASA_3772ASA_3771ASA_4091ASA_4090
AORE350688 CLOS_2003CLOS_0884CLOS_0095
AHYD196024 AHA_0566AHA_0565AHA_0305AHA_0306
AFER243159 AFE_1673AFE_3059AFE_2919
AEHR187272 MLG_0165MLG_2591MLG_1148MLG_1149
ACRY349163 ACRY_0353ACRY_1886ACRY_2179ACRY_0853
ACAU438753 AZC_4026AZC_4063AZC_0166AZC_3975
ABOR393595 ABO_0276ABO_0275ABO_0268ABO_0269
ABAU360910 BAV1169BAV1066BAV1065
AAVE397945 AAVE_1319AAVE_1584AAVE_1583


Organism features enriched in list (features available for 188 out of the 205 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00147161892
Disease:Brucellosis 0.003362255
Disease:Bubonic_plague 0.001064566
Disease:Dysentery 0.001064566
Disease:Gastroenteritis 0.00011891113
Endospores:No 6.339e-1134211
Endospores:Yes 0.0000424553
GC_Content_Range4:0-40 2.110e-376213
GC_Content_Range4:40-60 3.169e-697224
GC_Content_Range4:60-100 1.607e-1485145
GC_Content_Range7:30-40 2.219e-256166
GC_Content_Range7:50-60 1.044e-758107
GC_Content_Range7:60-70 9.930e-1885134
Genome_Size_Range5:2-4 1.853e-737197
Genome_Size_Range5:4-6 3.753e-32122184
Genome_Size_Range5:6-10 0.00001072947
Genome_Size_Range9:2-3 1.308e-913120
Genome_Size_Range9:4-5 1.265e-136396
Genome_Size_Range9:5-6 2.425e-135988
Genome_Size_Range9:6-8 3.734e-72738
Gram_Stain:Gram_Neg 2.376e-30168333
Gram_Stain:Gram_Pos 2.392e-244150
Habitat:Host-associated 0.000193548206
Habitat:Multiple 7.628e-680178
Habitat:Specialized 0.0047602953
Motility:No 2.604e-1315151
Motility:Yes 6.995e-16131267
Optimal_temp.:- 0.006907395257
Optimal_temp.:25-30 1.062e-81819
Optimal_temp.:37 0.009686725106
Oxygen_Req:Anaerobic 3.353e-135102
Oxygen_Req:Facultative 1.406e-895201
Shape:Coccus 1.350e-6982
Shape:Rod 1.353e-19160347
Shape:Sphere 0.0050344119
Shape:Spiral 0.0001656234
Temp._range:Hyperthermophilic 0.0012102123
Temp._range:Mesophilic 0.0028312164473
Temp._range:Psychrophilic 0.000652389
Temp._range:Thermophilic 0.0000132135



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 334
Effective number of orgs (counting one per cluster within 468 clusters): 265

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
XFAS405440 ncbi Xylella fastidiosa M121
XFAS183190 ncbi Xylella fastidiosa Temecula11
XFAS160492 ncbi Xylella fastidiosa 9a5c1
WSUC273121 ncbi Wolinella succinogenes DSM 17400
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TSP28240 Thermotoga sp.1
TROS309801 ncbi Thermomicrobium roseum DSM 51590
TPET390874 ncbi Thermotoga petrophila RKU-11
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TMAR243274 ncbi Thermotoga maritima MSB81
TLET416591 ncbi Thermotoga lettingae TMO0
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TFUS269800 ncbi Thermobifida fusca YX0
TERY203124 ncbi Trichodesmium erythraeum IMS1011
TELO197221 ncbi Thermosynechococcus elongatus BP-11
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12511
TDEN243275 ncbi Treponema denticola ATCC 354051
TCRU317025 ncbi Thiomicrospira crunogena XCL-21
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen0
STRO369723 ncbi Salinispora tropica CNB-4401
STOK273063 ncbi Sulfolobus tokodaii 70
STHE322159 ncbi Streptococcus thermophilus LMD-91
STHE299768 ncbi Streptococcus thermophilus CNRZ10661
STHE264199 ncbi Streptococcus thermophilus LMG 183111
SSUI391296 ncbi Streptococcus suis 98HAH331
SSUI391295 ncbi Streptococcus suis 05ZYH331
SSP387093 ncbi Sulfurovum sp. NBC37-11
SSP1148 ncbi Synechocystis sp. PCC 68031
SSOL273057 ncbi Sulfolobus solfataricus P20
SPYO370554 ncbi Streptococcus pyogenes MGAS107501
SPYO370553 ncbi Streptococcus pyogenes MGAS20961
SPYO370552 ncbi Streptococcus pyogenes MGAS102701
SPYO370551 ncbi Streptococcus pyogenes MGAS94291
SPYO319701 ncbi Streptococcus pyogenes MGAS61801
SPYO293653 ncbi Streptococcus pyogenes MGAS50051
SPYO286636 ncbi Streptococcus pyogenes MGAS103941
SPYO198466 ncbi Streptococcus pyogenes MGAS3151
SPYO193567 ncbi Streptococcus pyogenes SSI-11
SPYO186103 ncbi Streptococcus pyogenes MGAS82321
SPYO160490 ncbi Streptococcus pyogenes M1 GAS1
SPNE488221 ncbi Streptococcus pneumoniae 705851
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-61
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-141
SPNE171101 ncbi Streptococcus pneumoniae R61
SPNE170187 ncbi Streptococcus pneumoniae G541
SPNE1313 Streptococcus pneumoniae1
SMUT210007 ncbi Streptococcus mutans UA1591
SMAR399550 ncbi Staphylothermus marinus F10
SGOR29390 Streptococcus gordonii Challis1
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB0
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23380
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122281
SEPI176279 ncbi Staphylococcus epidermidis RP62A1
SELO269084 ncbi Synechococcus elongatus PCC 63010
SCO ncbi Streptomyces coelicolor A3(2)0
SAVE227882 ncbi Streptomyces avermitilis MA-46800
SARE391037 ncbi Salinispora arenicola CNS-2050
SAGA211110 ncbi Streptococcus agalactiae NEM3161
SAGA208435 ncbi Streptococcus agalactiae 2603V/R1
SAGA205921 ncbi Streptococcus agalactiae A9091
SACI56780 ncbi Syntrophus aciditrophicus SB1
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RTYP257363 ncbi Rickettsia typhi Wilmington1
RSP357808 ncbi Roseiflexus sp. RS-11
RSP101510 ncbi Rhodococcus jostii RHA10
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332090
RRIC452659 ncbi Rickettsia rickettsii Iowa1
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith1
RPRO272947 ncbi Rickettsia prowazekii Madrid E1
RMAS416276 ncbi Rickettsia massiliae MTU51
RFEL315456 ncbi Rickettsia felis URRWXCal21
RCON272944 ncbi Rickettsia conorii Malish 71
RCAS383372 ncbi Roseiflexus castenholzii DSM 139411
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3891
RBEL336407 ncbi Rickettsia bellii RML369-C1
RAKA293614 ncbi Rickettsia akari Hartford1
PTOR263820 ncbi Picrophilus torridus DSM 97900
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-11
PSP117 Pirellula sp.0
PRUM264731 ncbi Prevotella ruminicola 231
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257451
PMOB403833 ncbi Petrotoga mobilis SJ950
PMAR93060 ncbi Prochlorococcus marinus MIT 92151
PMAR74546 ncbi Prochlorococcus marinus MIT 93121
PMAR59920 ncbi Prochlorococcus marinus NATL2A1
PMAR167555 ncbi Prochlorococcus marinus NATL1A1
PMAR167546 ncbi Prochlorococcus marinus MIT 93011
PMAR167542 ncbi Prochlorococcus marinus MIT 95151
PMAR167540 Prochlorococcus marinus pastoris MED4ax1
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13751
PMAR146891 ncbi Prochlorococcus marinus AS96011
PLUT319225 ncbi Chlorobium luteolum DSM 2730
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 171
PHOR70601 ncbi Pyrococcus horikoshii OT30
PGIN242619 ncbi Porphyromonas gingivalis W831
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PDIS435591 ncbi Parabacteroides distasonis ATCC 85031
PCAR338963 ncbi Pelobacter carbinolicus DSM 23801
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PAER178306 ncbi Pyrobaculum aerophilum IM20
PACN267747 ncbi Propionibacterium acnes KPA1712020
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
NSP387092 ncbi Nitratiruptor sp. SB155-21
NSP35761 Nocardioides sp.0
NSP103690 ncbi Nostoc sp. PCC 71201
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
NOCE323261 ncbi Nitrosococcus oceani ATCC 197071
NMUL323848 ncbi Nitrosospira multiformis ATCC 251960
NMEN374833 ncbi Neisseria meningitidis 0534421
NMEN272831 ncbi Neisseria meningitidis FAM181
NMEN122587 ncbi Neisseria meningitidis Z24911
NMEN122586 ncbi Neisseria meningitidis MC581
NGON242231 ncbi Neisseria gonorrhoeae FA 10901
NFAR247156 ncbi Nocardia farcinica IFM 101520
NEUT335283 ncbi Nitrosomonas eutropha C910
NEUR228410 ncbi Nitrosomonas europaea ATCC 197180
MXAN246197 ncbi Myxococcus xanthus DK 16221
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-10
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra0
MTUB336982 ncbi Mycobacterium tuberculosis F110
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE264732 ncbi Moorella thermoacetica ATCC 390731
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MTBRV ncbi Mycobacterium tuberculosis H37Rv0
MTBCDC ncbi Mycobacterium tuberculosis CDC15510
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSP189918 ncbi Mycobacterium sp. KMS0
MSP164757 ncbi Mycobacterium sp. JLS0
MSP164756 ncbi Mycobacterium sp. MCS0
MSME246196 ncbi Mycobacterium smegmatis MC2 1550
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK0
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273431
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P20
MBOV233413 ncbi Mycobacterium bovis AF2122/970
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MAVI243243 ncbi Mycobacterium avium 1040
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
MABS561007 ncbi Mycobacterium abscessus ATCC 199770
LXYL281090 ncbi Leifsonia xyli xyli CTCB070
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53341
LSAK314315 ncbi Lactobacillus sakei sakei 23K1
LREU557436 ncbi Lactobacillus reuteri DSM 200161
LPNE400673 ncbi Legionella pneumophila Corby1
LPNE297246 ncbi Legionella pneumophila Paris1
LPNE297245 ncbi Legionella pneumophila Lens1
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 11
LPLA220668 ncbi Lactobacillus plantarum WCFS11
LMON265669 ncbi Listeria monocytogenes 4b F23651
LMON169963 ncbi Listeria monocytogenes EGD-e1
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82930
LLAC272623 ncbi Lactococcus lactis lactis Il14031
LLAC272622 ncbi Lactococcus lactis cremoris SK111
LJOH257314 ncbi Lactobacillus johnsonii NCC 5331
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-000
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1301
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566011
LINN272626 ncbi Listeria innocua Clip112621
LHEL405566 ncbi Lactobacillus helveticus DPC 45711
LGAS324831 ncbi Lactobacillus gasseri ATCC 333231
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118421
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3651
LCAS321967 ncbi Lactobacillus casei ATCC 3341
LBRE387344 ncbi Lactobacillus brevis ATCC 3671
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1971
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5501
LACI272621 ncbi Lactobacillus acidophilus NCFM1
KRAD266940 ncbi Kineococcus radiotolerans SRS302160
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSAL478009 ncbi Halobacterium salinarum R10
HPYL85963 ncbi Helicobacter pylori J990
HPYL357544 ncbi Helicobacter pylori HPAG10
HPY ncbi Helicobacter pylori 266950
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMAR272569 ncbi Haloarcula marismortui ATCC 430490
HHEP235279 ncbi Helicobacter hepaticus ATCC 514490
HHAL349124 ncbi Halorhodospira halophila SL11
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HACI382638 ncbi Helicobacter acinonychis Sheeba0
GVIO251221 ncbi Gloeobacter violaceus PCC 74211
GSUL243231 ncbi Geobacter sulfurreducens PCA1
GFOR411154 ncbi Gramella forsetii KT08031
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-001
FTUL418136 ncbi Francisella tularensis tularensis WY96-34181
FTUL401614 ncbi Francisella novicida U1121
FTUL393115 ncbi Francisella tularensis tularensis FSC1981
FTUL393011 ncbi Francisella tularensis holarctica OSU181
FTUL351581 Francisella tularensis holarctica FSC2001
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S850
FSP1855 Frankia sp. EAN1pec0
FSP106370 ncbi Frankia sp. CcI30
FRANT ncbi Francisella tularensis tularensis SCHU S41
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250171
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255861
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B11
FMAG334413 ncbi Finegoldia magna ATCC 293281
FJOH376686 ncbi Flavobacterium johnsoniae UW1011
FALN326424 ncbi Frankia alni ACN14a0
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
EFAE226185 ncbi Enterococcus faecalis V5831
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough0
DSP255470 ncbi Dehalococcoides sp. CBDB10
DSP216389 ncbi Dehalococcoides sp. BAV10
DPSY177439 ncbi Desulfotalea psychrophila LSv541
DOLE96561 ncbi Desulfococcus oleovorans Hxd31
DNOD246195 ncbi Dichelobacter nodosus VCS1703A0
DETH243164 ncbi Dehalococcoides ethenogenes 1950
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G200
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA0
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTET212717 ncbi Clostridium tetani E881
CTEP194439 ncbi Chlorobium tepidum TLS0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE250
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10621
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3821
CMIC31964 ncbi Clavibacter michiganensis sepedonicus1
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CJEJ407148 ncbi Campylobacter jejuni jejuni 811161
CJEJ360109 ncbi Campylobacter jejuni doylei 269.971
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1761
CJEJ195099 ncbi Campylobacter jejuni RM12211
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111681
CJEI306537 ncbi Corynebacterium jeikeium K4110
CJAP155077 Cellvibrio japonicus1
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334060
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3811
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130320
CFET360106 ncbi Campylobacter fetus fetus 82-401
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CEFF196164 ncbi Corynebacterium efficiens YS-3140
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131290
CDIF272563 ncbi Clostridium difficile 6300
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C1
CCUR360105 ncbi Campylobacter curvus 525.921
CCON360104 ncbi Campylobacter concisus 138261
CCHL340177 ncbi Chlorobium chlorochromatii CaD30
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B1
CBOT498213 ncbi Clostridium botulinum B1 str. Okra1
CBOT441772 ncbi Clostridium botulinum F str. Langeland1
CBOT441771 ncbi Clostridium botulinum A str. Hall1
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193971
CBOT36826 Clostridium botulinum A1
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN0
CBLO203907 ncbi Candidatus Blochmannia floridanus0
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80521
CACE272562 ncbi Clostridium acetobutylicum ATCC 8241
CABO218497 ncbi Chlamydophila abortus S26/30
BTUR314724 ncbi Borrelia turicatae 91E1350
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54821
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)0
BLON206672 ncbi Bifidobacterium longum NCC27050
BHER314723 ncbi Borrelia hermsii DAH0
BGAR290434 ncbi Borrelia garinii PBi0
BFRA295405 ncbi Bacteroides fragilis YCH461
BFRA272559 ncbi Bacteroides fragilis NCTC 93431
BCIC186490 Candidatus Baumannia cicadellinicola1
BBUR224326 ncbi Borrelia burgdorferi B310
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1001
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)0
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AVAR240292 ncbi Anabaena variabilis ATCC 294131
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP1667 Arthrobacter sp.1
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K10
ANAE240017 Actinomyces oris MG10
AMET293826 ncbi Alkaliphilus metalliredigens QYMF1
AMAR329726 ncbi Acaryochloris marina MBIC110171
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A1
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
ACEL351607 ncbi Acidothermus cellulolyticus 11B0
ABUT367737 ncbi Arcobacter butzleri RM40181
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3451
AAUR290340 ncbi Arthrobacter aurescens TC10
AAEO224324 ncbi Aquifex aeolicus VF51


Names of the homologs of the genes in the group in each of these orgs
  G7744   EG10688   EG10672   EG10269   
XFAS405440 XFASM12_1240
XFAS183190 PD_1083
XFAS160492 XF1714
WSUC273121
WPIP955
WPIP80849
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496
TWHI203267
TVOL273116
TSP28240 TRQ2_1435
TROS309801
TPET390874 TPET_1389
TPEN368408
TPAL243276
TMAR243274 TM_1394
TLET416591
TKOD69014
TFUS269800
TERY203124 TERY_2283
TELO197221 TLL0808
TDEN326298 TMDEN_1696
TDEN243275 TDE_2554
TCRU317025 TCR_1649
TACI273075
SWOL335541
STRO369723 STROP_1197
STOK273063
STHE322159 STER_0230
STHE299768 STR0180
STHE264199 STU0180
SSUI391296 SSU98_1974
SSUI391295 SSU05_1969
SSP387093 SUN_1431
SSP1148 SLL1988
SSOL273057
SPYO370554 MGAS10750_SPY0112
SPYO370553 MGAS2096_SPY0108
SPYO370552 MGAS10270_SPY0107
SPYO370551 MGAS9429_SPY0106
SPYO319701 M28_SPY0103
SPYO293653 M5005_SPY0105
SPYO286636 M6_SPY0154
SPYO198466 SPYM3_0096
SPYO193567 SPS0098
SPYO186103 SPYM18_0123
SPYO160490 SPY0123
SPNE488221 SP70585_2314
SPNE487214 SPH_2383
SPNE487213 SPT_2203
SPNE171101 SPR1993
SPNE170187 SPN12001
SPNE1313 SPJ_2215
SMUT210007 SMU_188C
SMAR399550
SGOR29390 SGO_1991
SFUM335543
SERY405948
SEPI176280 SE_1459
SEPI176279 SERP1353
SELO269084
SCO
SAVE227882
SARE391037
SAGA211110 GBS1865
SAGA208435 SAG_1824
SAGA205921 SAK_1844
SACI56780 SYN_02086
SACI330779
RTYP257363 RT0412
RSP357808 ROSERS_0114
RSP101510
RSAL288705
RRIC452659 RRIOWA_0706
RRIC392021 A1G_03330
RPRO272947 RP426
RMAS416276 RMA_0607
RFEL315456 RF_0657
RCON272944 RC0592
RCAS383372 RCAS_0353
RCAN293613
RBEL391896 A1I_04825
RBEL336407 RBE_0744
RAKA293614 A1C_03185
PTOR263820
PSP312153 PNUC_0949
PSP117
PRUM264731 GFRORF2279
PPEN278197 PEPE_1544
PMOB403833
PMAR93060 P9215_07501
PMAR74546 PMT9312_0665
PMAR59920 PMN2A_0097
PMAR167555 NATL1_07221
PMAR167546 P9301ORF_0732
PMAR167542 P9515ORF_0776
PMAR167540 PMM0665
PMAR167539 PRO_1027
PMAR146891 A9601_07201
PLUT319225
PISL384616
PINT246198 PIN_A0265
PHOR70601
PGIN242619 PG_1676
PFUR186497
PDIS435591 BDI_2805
PCAR338963 PCAR_0277
PAST100379
PARS340102
PAER178306
PACN267747
PABY272844
OTSU357244
NSP387092 NIS_0043
NSP35761
NSP103690 ALL1588
NSEN222891
NPHA348780
NOCE323261 NOC_2074
NMUL323848
NMEN374833 NMCC_0205
NMEN272831 NMC1977
NMEN122587 NMA0441
NMEN122586 NMB_2000
NGON242231 NGO1189
NFAR247156
NEUT335283
NEUR228410
MXAN246197 MXAN_1073
MVAN350058
MTUB419947
MTUB336982
MTHE349307
MTHE264732 MOTH_0633
MTHE187420
MTBRV
MTBCDC
MSYN262723
MSTA339860
MSP189918
MSP164757
MSP164756
MSME246196
MSED399549
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR368407
MMAR267377
MLEP272631
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGIL350054
MGEN243273
MFLO265311
MCAP340047 MCAP_0020
MBUR259564
MBOV410289
MBOV233413
MBAR269797
MAVI243243
MART243272
MAEO419665
MACE188937
MABS561007
LXYL281090
LWEL386043 LWE0185
LSAK314315 LSA1596
LREU557436 LREU_0269
LPNE400673 LPC_3104
LPNE297246 LPP2870
LPNE297245 LPL2733
LPNE272624 LPG2817
LPLA220668 LP_0548
LMON265669 LMOF2365_0233
LMON169963 LMO0222
LMES203120
LLAC272623 L17654
LLAC272622 LACR_2209
LJOH257314 LJ_0285
LINT363253
LINT267671 LIC_10216
LINT189518 LA0251
LINN272626 LIN0254
LHEL405566 LHV_0297
LGAS324831 LGAS_0278
LDEL390333 LDB0369
LDEL321956 LBUL_0324
LCAS321967 LSEI_2534
LBRE387344 LVIS_0524
LBOR355277 LBJ_2789
LBOR355276 LBL_0282
LACI272621 LBA0279
KRAD266940
IHOS453591
HWAL362976
HSP64091
HSAL478009
HPYL85963
HPYL357544
HPY
HMUK485914
HMAR272569
HHEP235279
HHAL349124 HHAL_1001
HBUT415426
HACI382638
GVIO251221 GLR2281
GSUL243231 GSU_3348
GFOR411154 GFO_0105
FTUL458234 FTA_1704
FTUL418136 FTW_1621
FTUL401614 FTN_0540
FTUL393115 FTF0449
FTUL393011 FTH_1563
FTUL351581 FTL_1616
FSUC59374
FSP1855
FSP106370
FRANT PCKA
FPHI484022 FPHI_0297
FNUC190304 FN1120
FNOD381764 FNOD_1493
FMAG334413 FMG_0803
FJOH376686 FJOH_1366
FALN326424
ERUM302409
ERUM254945
EFAE226185 EF_0266
ECHA205920
ECAN269484
DVUL882
DSP255470
DSP216389
DPSY177439 DP0560
DOLE96561 DOLE_1321
DNOD246195
DETH243164
DDES207559
CVES412965
CTRA471473
CTRA471472
CTET212717 CTC_02291
CTEP194439
CSUL444179
CRUT413404
CPRO264201
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPEL335992 SAR11_0089
CMUR243161
CMIC443906 CMM_2335
CMIC31964 CMS2515
CMET456442
CMAQ397948
CKOR374847
CJEJ407148 C8J_0869
CJEJ360109 JJD26997_0882
CJEJ354242 CJJ81176_0939
CJEJ195099 CJE_1010
CJEJ192222 CJ0932C
CJEI306537
CJAP155077 CJA_0307
CHUT269798
CHOM360107 CHAB381_1486
CGLU196627
CFET360106 CFF8240_1294
CFEL264202
CEFF196164
CDIP257309
CDIF272563
CDES477974 DAUD_1563
CCUR360105 CCV52592_0965
CCON360104 CCC13826_1509
CCHL340177
CCAV227941
CBOT508765 CLL_A2482
CBOT498213 CLD_1393
CBOT441772 CLI_3208
CBOT441771 CLC_3053
CBOT441770 CLB_3178
CBOT36826 CBO3143
CBLO291272
CBLO203907
CBEI290402 CBEI_1800
CACE272562 CAC2370
CABO218497
BTUR314724
BTHE226186 BT_2790
BSP107806
BLON206672
BHER314723
BGAR290434
BFRA295405 BF4446
BFRA272559 BF4244
BCIC186490 BCI_0013
BBUR224326
BBAC264462 BD1255
BAPH372461
BAPH198804
BAFZ390236
AYEL322098
AVAR240292 AVA_4200
AURANTIMONAS
ASP1667 ARTH_1441
APHA212042
APER272557
ANAE240017
AMET293826 AMET_1628
AMAR329726 AM1_4974
AMAR234826
ALAI441768 ACL_1379
AFUL224325
ACEL351607
ABUT367737 ABU_1227
ABAC204669 ACID345_4460
AAUR290340
AAEO224324 AQ_2009


Organism features enriched in list (features available for 314 out of the 334 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Aggregates 0.003614599
Arrangment:Clusters 0.0079567417
Arrangment:Filaments 0.00192061010
Arrangment:Pairs 0.000021241112
Disease:Gastroenteritis 0.0042335213
Disease:Pharyngitis 0.006792088
Disease:Wide_range_of_infections 0.00101901111
Disease:bronchitis_and_pneumonitis 0.006792088
Endospores:No 1.197e-11152211
Endospores:Yes 0.00113391853
GC_Content_Range4:0-40 3.469e-16161213
GC_Content_Range4:40-60 0.0007341103224
GC_Content_Range4:60-100 1.185e-849145
GC_Content_Range7:0-30 4.111e-74147
GC_Content_Range7:30-40 6.407e-9120166
GC_Content_Range7:50-60 0.000029539107
GC_Content_Range7:60-70 1.136e-1040134
Genome_Size_Range5:0-2 1.063e-39148155
Genome_Size_Range5:4-6 1.067e-2937184
Genome_Size_Range5:6-10 0.00219671647
Genome_Size_Range9:0-1 3.235e-82727
Genome_Size_Range9:1-2 9.446e-30121128
Genome_Size_Range9:2-3 0.005325576120
Genome_Size_Range9:4-5 2.487e-122196
Genome_Size_Range9:5-6 9.160e-141688
Genome_Size_Range9:6-8 0.00026411038
Gram_Stain:Gram_Neg 3.581e-14135333
Gram_Stain:Gram_Pos 0.0000902100150
Habitat:Host-associated 0.0008506128206
Habitat:Multiple 0.001212680178
Habitat:Terrestrial 0.0008208831
Motility:No 1.998e-9112151
Motility:Yes 4.505e-13101267
Optimal_temp.:37 0.005396868106
Oxygen_Req:Anaerobic 1.235e-880102
Oxygen_Req:Facultative 3.682e-1073201
Pathogenic_in:Animal 0.00233942566
Shape:Coccobacillus 0.0024054111
Shape:Coccus 0.00080845782
Shape:Irregular_coccus 0.00002201717
Shape:Pleomorphic 0.006792088
Shape:Rod 6.907e-20134347
Shape:Sphere 0.00010441819
Shape:Spiral 0.00001143034
Temp._range:Hyperthermophilic 0.00009552123
Temp._range:Mesophilic 0.0037153243473
Temp._range:Psychrophilic 0.009538719



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951610.7134
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)1491350.6885
TYRFUMCAT-PWY (tyrosine degradation I)1841500.6699
PWY-4041 (γ-glutamyl cycle)2791860.6471
PWY-5918 (heme biosynthesis I)2721830.6440
GLYCOCAT-PWY (glycogen degradation I)2461710.6293
PWY-5028 (histidine degradation II)1301170.6240
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2861840.6162
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251600.6114
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3001880.6104
GLUTATHIONESYN-PWY (glutathione biosynthesis)3391980.5930
PWY-5148 (acyl-CoA hydrolysis)2271570.5842
PWY-5857 (ubiquinone-10 biosynthesis (prokaryotic))1831380.5834
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2911790.5700
PWY-1269 (CMP-KDO biosynthesis I)3251900.5680
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181510.5677
AST-PWY (arginine degradation II (AST pathway))1201050.5675
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491630.5654
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491630.5654
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2961800.5650
CHOLINE-BETAINE-ANA-PWY (choline degradation I)1351120.5603
PWY-5855 (ubiquinone-7 biosynthesis (prokaryotic))1911380.5568
BETSYN-PWY (glycine betaine biosynthesis I (Gram-negative bacteria))1381130.5560
NAGLIPASYN-PWY (lipid IVA biosynthesis)3481940.5469
PWY0-541 (cyclopropane fatty acid (CFA) biosynthesis)3001780.5421
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2901740.5381
PWY-5913 (TCA cycle variation IV)3011770.5329
GALACTCAT-PWY (D-galactonate degradation)104920.5293
P344-PWY (acrylonitrile degradation)2101420.5268
PWY0-845 (superpathway of pyridoxal 5'-phosphate biosynthesis and salvage)3291850.5251
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)1761270.5242
PWY-5856 (ubiquinone-9 biosynthesis (prokaryotic))2551590.5217
GDPRHAMSYN-PWY (GDP-D-rhamnose biosynthesis)1561170.5178
GLUCONSUPER-PWY (D-gluconate degradation)2291480.5147
PWY-46 (putrescine biosynthesis III)1381070.5067
REDCITCYC (TCA cycle variation II)1741230.5006
GALACTARDEG-PWY (D-galactarate degradation I)1511120.4968
SO4ASSIM-PWY (sulfate reduction I (assimilatory))3111750.4965
PWY-6087 (4-chlorocatechol degradation)2231430.4961
GLUCARDEG-PWY (D-glucarate degradation I)1521120.4930
VALDEG-PWY (valine degradation I)2901670.4902
SULFATE-CYS-PWY (superpathway of sulfate assimilation and cysteine biosynthesis)3651900.4847
PWY0-1335 (NADH to cytochrome bo oxidase electron transfer)112910.4817
PWY-561 (superpathway of glyoxylate cycle)1621150.4805
PWY0-1329 (succinate to cytochrome bo oxidase electron transfer)96820.4770
UBISYN-PWY (ubiquinol-8 biosynthesis (prokaryotic))3981980.4768
ECASYN-PWY (enterobacterial common antigen biosynthesis)1911270.4753
PWY-6193 (3-chlorocatechol degradation II (ortho))1941280.4734
PWY-5340 (sulfate activation for sulfonation)3851940.4733
PHENYLALANINE-DEG1-PWY (phenylalanine degradation I (aerobic))2891640.4720
GLYOXYLATE-BYPASS (glyoxylate cycle)1691170.4717
GALACTITOLCAT-PWY (galactitol degradation)73680.4671
LIPASYN-PWY (phospholipases)2121340.4632
4AMINOBUTMETAB-PWY (superpathway of 4-aminobutyrate degradation)2121340.4632
GLUCARGALACTSUPER-PWY (superpathway of D-glucarate and D-galactarate degradation)1351000.4608
DAPLYSINESYN-PWY (lysine biosynthesis I)3421790.4563
PWY-5964 (molybdopterin guanine dinucleotide biosynthesis)2901620.4559
PWY-2361 (3-oxoadipate degradation)82720.4549
PWY0-862 (cis-dodecenoyl biosynthesis)3431790.4542
PYRIDOXSYN-PWY (pyridoxal 5'-phosphate biosynthesis I)4222010.4541
PWY0-981 (taurine degradation IV)106840.4466
P601-PWY (D-camphor degradation)95780.4441
PWY1-3 (polyhydroxybutyrate biosynthesis)115880.4417
GLUT-REDOX-PWY (glutathione redox reactions II)2461440.4406
PWY-3162 (tryptophan degradation V (side chain pathway))94770.4397
PLPSAL-PWY (pyridoxal 5'-phosphate salvage pathway)3741860.4389
PWY-6268 (adenosylcobalamin salvage from cobalamin)3171680.4352
PWY-5386 (methylglyoxal degradation I)3051640.4349
GLUTAMINDEG-PWY (glutamine degradation I)1911210.4308
GLYSYN-THR-PWY (glycine biosynthesis IV)2151300.4258
PWY-1501 (mandelate degradation I)73640.4246
PWY-5084 (2-ketoglutarate dehydrogenase complex)3261690.4222
METSYN-PWY (homoserine and methionine biosynthesis)3971900.4218
4-HYDROXYMANDELATE-DEGRADATION-PWY (4-hydroxymandelate degradation)102790.4195
PWY-6089 (3-chlorocatechol degradation I (ortho))102790.4195
PWY-4221 (pantothenate and coenzymeA biosynthesis II)112840.4194
MET-SAM-PWY (superpathway of S-adenosyl-L-methionine biosynthesis)3921880.4174
PWY-5188 (tetrapyrrole biosynthesis I)4392000.4159
PWY-3941 (β-alanine biosynthesis II)117860.4155
ACETATEUTIL-PWY (superpathway of acetate utilization and formation)2371370.4153
ARGSYNBSUB-PWY (arginine biosynthesis II (acetyl cycle))3831850.4140
PWY-5025 (IAA biosynthesis IV)92730.4114
PWY0-1313 (acetate conversion to acetyl-CoA)3851850.4100
PWY0-501 (lipoate biosynthesis and incorporation I)3851850.4100
PWY-81 (toluene degradation to benzoyl-CoA (anaerobic))67590.4075
PWY-6134 (tyrosine biosynthesis IV)89710.4072
THREONINE-DEG2-PWY (threonine degradation II)2141270.4070
PWY-5669 (phosphatidylethanolamine biosynthesis I)4161930.4070
PWY-1781 (β-alanine degradation II)49480.4045
PWY0-1353 (succinate to cytochrome bd oxidase electron transfer)1781120.4040
P381-PWY (adenosylcobalamin biosynthesis II (late cobalt incorporation))3711800.4032
P184-PWY (protocatechuate degradation I (meta-cleavage pathway))94730.4015
HOMOSER-METSYN-PWY (methionine biosynthesis I)4191930.4013
PWY-6196 (serine racemization)102770.4010



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG10688   EG10672   EG10269   
G77440.9994170.9986780.998628
EG106880.9986640.998787
EG106720.999811
EG10269



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PAIRWISE BLAST SCORES:

  G7744   EG10688   EG10672   EG10269   
G77440.0f0---
EG10688-0.0f0--
EG10672--0.0f0-
EG10269---0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10269 EG10672 EG10688 G7744 (centered at EG10269)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7744   EG10688   EG10672   EG10269   
381/623243/623232/623215/623
AAEO224324:0:Tyes0---
AAVE397945:0:Tyes0-263262
ABAC204669:0:Tyes--0-
ABAU360910:0:Tyes103-10
ABOR393595:0:Tyes8701
ABUT367737:0:Tyes-0--
ACAU438753:0:Tyes3907394403856
ACRY349163:8:Tyes015381832500
ADEH290397:0:Tyes0-2519-
AEHR187272:0:Tyes02411977978
AFER243159:0:Tyes0-13721233
AHYD196024:0:Tyes25625501
ALAI441768:0:Tyes0---
AMAR329726:9:Tyes0---
AMET293826:0:Tyes0---
AORE350688:0:Tyes19227770-
APLE416269:0:Tyes5190--
APLE434271:0:Tno5340--
ASAL382245:5:Tyes10311310
ASP1667:3:Tyes--0-
ASP232721:2:Tyes0-20792080
ASP62928:0:Tyes0-5251
ASP62977:0:Tyes0-27702771
ASP76114:2:Tyes193-01
AVAR240292:3:Tyes0---
BABO262698:0:Tno--0-
BABO262698:1:Tno0--1134
BAMB339670:3:Tno223-01
BAMB398577:3:Tno168-01
BAMY326423:0:Tyes026713413-
BANT260799:0:Tno04636--
BANT261594:2:Tno04567--
BANT568206:2:Tyes04822--
BANT592021:2:Tno04808--
BBAC264462:0:Tyes0---
BBAC360095:0:Tyes275--0
BBRO257310:0:Tyes0-113114
BCAN483179:0:Tno---0
BCAN483179:1:Tno017631204-
BCEN331271:0:Tno0-175174
BCEN331272:3:Tyes166-01
BCER226900:1:Tyes04597--
BCER288681:0:Tno04506--
BCER315749:1:Tyes03212191-
BCER405917:1:Tyes04604222-
BCER572264:1:Tno04639193-
BCIC186490:0:Tyes-0--
BCLA66692:0:Tyes02835--
BFRA272559:1:Tyes-0--
BFRA295405:0:Tno-0--
BHAL272558:0:Tyes03303--
BHEN283166:0:Tyes0--1003
BJAP224911:0:Fyes0708655916404
BLIC279010:0:Tyes03022--
BMAL243160:1:Tno174-01
BMAL320388:1:Tno202-01
BMAL320389:1:Tyes204-01
BMEL224914:0:Tno--01
BMEL224914:1:Tno0423--
BMEL359391:0:Tno--0-
BMEL359391:1:Tno0--1104
BOVI236:0:Tyes--0-
BOVI236:1:Tyes---0
BPAR257311:0:Tno0-113114
BPER257313:0:Tyes0-1076775
BPET94624:0:Tyes106-10
BPSE272560:1:Tyes176-01
BPSE320372:1:Tno1529-01
BPSE320373:1:Tno211-01
BPUM315750:0:Tyes02648--
BQUI283165:0:Tyes0--210
BSP36773:2:Tyes169-01
BSP376:0:Tyes5738047245049
BSUB:0:Tyes03167--
BSUI204722:0:Tyes--10
BSUI204722:1:Tyes01725--
BSUI470137:0:Tno--0-
BSUI470137:1:Tno0--1209
BTHA271848:1:Tno0-191190
BTHE226186:0:Tyes-0--
BTHU281309:1:Tno04393--
BTHU412694:1:Tno04129--
BTRI382640:1:Tyes0--550
BVIE269482:7:Tyes317-01
BWEI315730:4:Tyes04527--
BXEN266265:1:Tyes--01
CACE272562:1:Tyes0---
CAULO:0:Tyes1077-10
CBEI290402:0:Tyes0---
CBOT36826:1:Tno0---
CBOT441770:0:Tyes0---
CBOT441771:0:Tno0---
CBOT441772:1:Tno0---
CBOT498213:1:Tno0---
CBOT508765:1:Tyes0---
CBOT515621:2:Tyes2932-0-
CBOT536232:0:Tno2279-0-
CBUR227377:1:Tyes-8210
CBUR360115:1:Tno-202901
CBUR434922:2:Tno-8410
CCON360104:2:Tyes-0--
CCUR360105:0:Tyes-0--
CDES477974:0:Tyes-0--
CFET360106:0:Tyes-0--
CHOM360107:1:Tyes-0--
CHYD246194:0:Tyes0-1058-
CJAP155077:0:Tyes0---
CJEJ192222:0:Tyes-0--
CJEJ195099:0:Tno-0--
CJEJ354242:2:Tyes-0--
CJEJ360109:0:Tyes-0--
CJEJ407148:0:Tno-0--
CKLU431943:1:Tyes5020--
CMIC31964:2:Tyes--0-
CMIC443906:2:Tyes--0-
CNOV386415:0:Tyes0-1335-
CPEL335992:0:Tyes---0
CPER195102:1:Tyes1266-0-
CPER195103:0:Tno1507-0-
CPER289380:3:Tyes1242-0-
CPHY357809:0:Tyes1450-0-
CPSY167879:0:Tyes0132
CSAL290398:0:Tyes24424310
CSP501479:6:Fyes-590-
CSP501479:7:Fyes0---
CSP501479:8:Fyes---0
CSP78:2:Tyes0-2073355
CTET212717:0:Tyes0---
CVIO243365:0:Tyes1840-01
DARO159087:0:Tyes765-10
DGEO319795:1:Tyes0638--
DHAF138119:0:Tyes015301952-
DOLE96561:0:Tyes--0-
DPSY177439:2:Tyes0---
DRAD243230:3:Tyes70--
DRED349161:0:Tyes0-551-
DSHI398580:5:Tyes3316031272323
ECAR218491:0:Tyes0132
ECOL199310:0:Tno0498
ECOL316407:0:Tno4201
ECOL331111:6:Tno0465
ECOL362663:0:Tno0243
ECOL364106:1:Tno0465
ECOL405955:2:Tyes0243
ECOL409438:6:Tyes0376
ECOL413997:0:Tno0243
ECOL439855:4:Tno0376
ECOL469008:0:Tno5201
ECOL481805:0:Tno4201
ECOL585034:0:Tno0487
ECOL585035:0:Tno0354
ECOL585055:0:Tno0376
ECOL585056:2:Tno0354
ECOL585057:0:Tno0265
ECOL585397:0:Tno0354
ECOL83334:0:Tno0243
ECOLI:0:Tno0243
ECOO157:0:Tno0354
EFAE226185:3:Tyes0---
EFER585054:1:Tyes0265
ELIT314225:0:Tyes239201985-
ESP42895:1:Tyes0243
FJOH376686:0:Tyes-0--
FMAG334413:1:Tyes0---
FNOD381764:0:Tyes0---
FNUC190304:0:Tyes-0--
FPHI484022:1:Tyes-0--
FRANT:0:Tno-0--
FTUL351581:0:Tno-0--
FTUL393011:0:Tno-0--
FTUL393115:0:Tyes-0--
FTUL401614:0:Tyes-0--
FTUL418136:0:Tno-0--
FTUL458234:0:Tno-0--
GBET391165:0:Tyes1532-01505
GFOR411154:0:Tyes-0--
GKAU235909:1:Tyes02870--
GMET269799:1:Tyes03129--
GOXY290633:5:Tyes1107-14660
GSUL243231:0:Tyes0---
GTHE420246:1:Tyes02645--
GURA351605:0:Tyes0846--
GVIO251221:0:Tyes0---
HARS204773:0:Tyes258-01
HAUR316274:2:Tyes-0599-
HCHE349521:0:Tyes1053245323
HDUC233412:0:Tyes0426--
HHAL349124:0:Tyes0---
HINF281310:0:Tyes10--
HINF374930:0:Tyes01--
HINF71421:0:Tno10--
HMOD498761:0:Tyes0650--
HNEP81032:0:Tyes02069-2455
HSOM205914:1:Tyes200--
HSOM228400:0:Tno14450--
ILOI283942:0:Tyes180004748
JSP290400:1:Tyes046119521768
JSP375286:0:Tyes0-146145
KPNE272620:2:Tyes0132
LACI272621:0:Tyes0---
LBIF355278:2:Tyes02824--
LBIF456481:2:Tno02925--
LBOR355276:1:Tyes-0--
LBOR355277:1:Tno-0--
LBRE387344:2:Tyes0---
LCAS321967:1:Tyes0---
LCHO395495:0:Tyes0-740739
LDEL321956:0:Tyes0---
LDEL390333:0:Tyes0---
LGAS324831:0:Tyes0---
LHEL405566:0:Tyes0---
LINN272626:1:Tno0---
LINT189518:1:Tyes-0--
LINT267671:1:Tno-0--
LJOH257314:0:Tyes0---
LLAC272622:5:Tyes0---
LLAC272623:0:Tyes0---
LMON169963:0:Tno0---
LMON265669:0:Tyes0---
LPLA220668:0:Tyes0---
LPNE272624:0:Tno0---
LPNE297245:1:Fno0---
LPNE297246:1:Fyes0---
LPNE400673:0:Tno0---
LREU557436:0:Tyes0---
LSAK314315:0:Tyes0---
LSPH444177:1:Tyes04040--
LWEL386043:0:Tyes0---
MAER449447:0:Tyes479301611-
MAQU351348:2:Tyes142514260-
MCAP243233:0:Tyes2097-10
MCAP340047:0:Tyes0---
MEXT419610:0:Tyes371021242125
MFLA265072:0:Tyes453-10
MLOT266835:2:Tyes23421887560
MMAG342108:0:Tyes0-231230
MMAR394221:0:Tyes0612-277
MPET420662:1:Tyes437-10
MSP266779:2:Tyes--01
MSP266779:3:Tyes03516--
MSP400668:0:Tyes2477197028460
MSP409:2:Tyes60700612611
MSUC221988:0:Tyes031--
MTHE264732:0:Tyes-0--
MXAN246197:0:Tyes0---
NARO279238:0:Tyes2743250602206
NGON242231:0:Tyes0---
NHAM323097:2:Tyes021333412794
NMEN122586:0:Tno0---
NMEN122587:0:Tyes0---
NMEN272831:0:Tno0---
NMEN374833:0:Tno0---
NOCE323261:1:Tyes0---
NSP103690:6:Tyes0---
NSP387092:0:Tyes-0--
NWIN323098:0:Tyes0220-2413
OANT439375:5:Tyes043212741273
OCAR504832:0:Tyes0291424312543
OIHE221109:0:Tyes02318--
PAER208963:0:Tyes1087
PAER208964:0:Tno1087
PARC259536:0:Tyes179-01909
PATL342610:0:Tyes2206401
PCAR338963:0:Tyes0---
PCRY335284:1:Tyes198-02181
PDIS435591:0:Tyes-0--
PENT384676:0:Tyes6701
PFLU205922:0:Tyes7801
PFLU216595:1:Tyes7801
PFLU220664:0:Tyes7801
PGIN242619:0:Tyes-0--
PHAL326442:1:Tyes1026472646
PING357804:0:Tyes1012322063
PINT246198:1:Tyes-0--
PLUM243265:0:Fyes01114115
PMAR146891:0:Tyes0---
PMAR167539:0:Tyes0---
PMAR167540:0:Tyes0---
PMAR167542:0:Tyes0---
PMAR167546:0:Tyes0---
PMAR167555:0:Tyes0---
PMAR59920:0:Tno0---
PMAR74546:0:Tyes0---
PMAR74547:0:Tyes--10
PMAR93060:0:Tyes0---
PMEN399739:0:Tyes8901
PMUL272843:1:Tyes50--
PNAP365044:8:Tyes0-13721373
PPEN278197:0:Tyes0---
PPRO298386:2:Tyes3289329001
PPUT160488:0:Tno6-01
PPUT351746:0:Tyes6701
PPUT76869:0:Tno6701
PRUM264731:0:Tyes-0--
PSP296591:2:Tyes478-01
PSP312153:0:Tyes0---
PSP56811:2:Tyes1897-19510
PSTU379731:0:Tyes6701
PSYR205918:0:Tyes109091
PSYR223283:2:Tyes018990
PTHE370438:0:Tyes-7960-
RAKA293614:0:Fyes---0
RALB246199:0:Tyes02412--
RBEL336407:0:Tyes---0
RBEL391896:0:Fno---0
RCAS383372:0:Tyes--0-
RCON272944:0:Tno---0
RDEN375451:4:Tyes08991291728
RETL347834:4:Tyes--0-
RETL347834:5:Tyes4750-2943
REUT264198:3:Tyes705-9770
REUT381666:2:Tyes0-266265
RFEL315456:2:Tyes---0
RFER338969:1:Tyes0-8081
RLEG216596:6:Tyes530035773430
RMAS416276:1:Tyes---0
RMET266264:2:Tyes0-882883
RPAL258594:0:Tyes4450032334032
RPAL316055:0:Tyes402603801602
RPAL316056:0:Tyes432104059782
RPAL316057:0:Tyes5400-3552
RPAL316058:0:Tyes330015111510
RPOM246200:1:Tyes06662182102
RPRO272947:0:Tyes---0
RRIC392021:0:Fno---0
RRIC452659:0:Tyes---0
RRUB269796:1:Tyes1987-0943
RSOL267608:1:Tyes0-537536
RSP357808:0:Tyes--0-
RSPH272943:4:Tyes2599025311570
RSPH349101:2:Tno2576025061535
RSPH349102:5:Tyes1196111813390
RTYP257363:0:Tno---0
RXYL266117:0:Tyes-2980-
SACI56780:0:Tyes-0--
SAGA205921:0:Tno0---
SAGA208435:0:Tno0---
SAGA211110:0:Tyes0---
SALA317655:1:Tyes606130601
SAUR158878:1:Tno01295--
SAUR158879:1:Tno01194--
SAUR196620:0:Tno01283--
SAUR273036:0:Tno01167--
SAUR282458:0:Tno01326--
SAUR282459:0:Tno01268--
SAUR359786:1:Tno01312--
SAUR359787:1:Tno01315--
SAUR367830:3:Tno01222--
SAUR418127:0:Tyes01285--
SAUR426430:0:Tno01225--
SAUR93061:0:Fno01359--
SAUR93062:1:Tno01249--
SBAL399599:3:Tyes1042964297
SBAL402882:1:Tno1041374138
SBOY300268:1:Tyes0243
SDEG203122:0:Tyes26600--
SDEN318161:0:Tyes1034993500
SDYS300267:1:Tyes6201
SENT209261:0:Tno4201
SENT220341:0:Tno4201
SENT295319:0:Tno0243
SENT321314:2:Tno0243
SENT454169:2:Tno0354
SEPI176279:1:Tyes-0--
SEPI176280:0:Tno-0--
SFLE198214:0:Tyes0354
SFLE373384:0:Tno0243
SGLO343509:3:Tyes0132
SGOR29390:0:Tyes0---
SHAE279808:0:Tyes13750--
SHAL458817:0:Tyes4050405110
SHIGELLA:0:Tno4201
SLAC55218:1:Fyes13091301728
SLOI323850:0:Tyes011516
SMED366394:1:Tyes--0-
SMED366394:3:Tyes03088-2089
SMEL266834:1:Tyes--0-
SMEL266834:2:Tyes4850-2336
SMUT210007:0:Tyes0---
SONE211586:1:Tyes1044034404
SPEA398579:0:Tno1040274028
SPNE1313:0:Tyes0---
SPNE170187:0:Tyes0---
SPNE171101:0:Tno0---
SPNE487213:0:Tno0---
SPNE487214:0:Tno0---
SPNE488221:0:Tno0---
SPRO399741:1:Tyes2545025502549
SPYO160490:0:Tno0---
SPYO186103:0:Tno0---
SPYO193567:0:Tno0---
SPYO198466:0:Tno0---
SPYO286636:0:Tno0---
SPYO293653:0:Tno0---
SPYO319701:0:Tyes0---
SPYO370551:0:Tno0---
SPYO370552:0:Tno0---
SPYO370553:0:Tno0---
SPYO370554:0:Tyes0---
SRUB309807:1:Tyes-0113-
SSAP342451:2:Tyes12830--
SSED425104:0:Tyes4337433810
SSON300269:1:Tyes0132
SSP1131:0:Tyes0-553554
SSP1148:0:Tyes0---
SSP292414:2:Tyes143397914680
SSP321327:0:Tyes1033-0-
SSP321332:0:Tyes0-1093-
SSP387093:0:Tyes-0--
SSP644076:6:Fyes6020639-
SSP644076:7:Fyes---0
SSP64471:0:Tyes39-01
SSP84588:0:Tyes351-10
SSP94122:1:Tyes1039683969
SSUI391295:0:Tyes0---
SSUI391296:0:Tyes0---
STHE264199:0:Tyes0---
STHE292459:0:Tyes0-1167-
STHE299768:0:Tno0---
STHE322159:2:Tyes0---
STRO369723:0:Tyes--0-
STYP99287:1:Tyes0243
TCRU317025:0:Tyes0---
TDEN243275:0:Tyes0---
TDEN292415:0:Tyes0-16291628
TDEN326298:0:Tyes-0--
TELO197221:0:Tyes0---
TERY203124:0:Tyes0---
TMAR243274:0:Tyes0---
TPET390874:0:Tno0---
TPSE340099:0:Tyes0-1016-
TSP1755:0:Tyes15868290-
TSP28240:0:Tyes0---
TTEN273068:0:Tyes120112510-
TTHE262724:1:Tyes01192--
TTHE300852:2:Tyes6350--
TTUR377629:0:Tyes0833--
VCHO:0:Tyes222410
VCHO345073:1:Tno242510
VEIS391735:1:Tyes--10
VFIS312309:2:Tyes2457245801
VPAR223926:1:Tyes102526
VVUL196600:2:Tyes102930
VVUL216895:1:Tno232410
XAUT78245:1:Tyes016291208940
XAXO190486:0:Tyes2319-10
XCAM190485:0:Tyes0-529530
XCAM314565:0:Tno467-10
XCAM316273:0:Tno0-487488
XCAM487884:0:Tno488-10
XFAS160492:2:Tno0---
XFAS183190:1:Tyes0---
XFAS405440:0:Tno0---
XORY291331:0:Tno0-20942099
XORY342109:0:Tyes0-19741981
XORY360094:0:Tno4245-120
YENT393305:1:Tyes011920
YPES187410:5:Tno3201
YPES214092:3:Tno3201
YPES349746:2:Tno0132
YPES360102:3:Tyes0132
YPES377628:2:Tno0132
YPES386656:2:Tno3201
YPSE273123:2:Tno0132
YPSE349747:2:Tno0132
ZMOB264203:0:Tyes0--785



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