CANDIDATE ID: 1052

CANDIDATE ID: 1052

NUMBER OF GENES: 4
AVERAGE SCORE:    9.9913267e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- EG11087 (secM) (b0097)
   Products of gene:
     - EG11087-MONOMER (secretion monitor that regulates SecA translation (General Secretory Pathway))

- EG10936 (secA) (b0098)
   Products of gene:
     - SECA (SecA)
     - SEC-SECRETION-CPLX (Sec Protein Secretion Complex)

- EG10626 (mutT) (b0099)
   Products of gene:
     - EG10626-MONOMER (dGTP pyrophosphohydrolase)
       Reactions:
        dGTP + H2O  =  dGMP + diphosphate + H+

- EG10265 (lpxC) (b0096)
   Products of gene:
     - UDPACYLGLCNACDEACETYL-MONOMER (UDP-3-O-acyl-N-acetylglucosamine deacetylase)
       Reactions:
        UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetylglucosamine + H2O  ->  UDP-3-O-(3-hydroxymyristoyl)glucosamine + acetate
         In pathways
         LPSSYN-PWY (superpathway of lipopolysaccharide biosynthesis)
         KDO-NAGLIPASYN-PWY (superpathway of KDO2-lipid A biosynthesis)
         NAGLIPASYN-PWY (lipid IVA biosynthesis)



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ORGANISMS CONTAINING AT LEAST 3 GENES FROM THE GROUP:

Total number of orgs: 259
Effective number of orgs (counting one per cluster within 468 clusters): 186

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317584
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329534
YPES386656 ncbi Yersinia pestis Pestoides F4
YPES377628 ncbi Yersinia pestis Nepal5164
YPES360102 ncbi Yersinia pestis Antiqua4
YPES349746 ncbi Yersinia pestis Angola4
YPES214092 ncbi Yersinia pestis CO924
YPES187410 ncbi Yersinia pestis KIM 104
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80814
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A3
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110183
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103313
XFAS405440 ncbi Xylella fastidiosa M123
XFAS183190 ncbi Xylella fastidiosa Temecula13
XFAS160492 ncbi Xylella fastidiosa 9a5c3
XCAM487884 Xanthomonas campestris pv. paulliniae3
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-103
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80043
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339133
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3063
VVUL216895 ncbi Vibrio vulnificus CMCP63
VVUL196600 ncbi Vibrio vulnificus YJ0163
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106333
VFIS312309 ncbi Vibrio fischeri ES1143
VEIS391735 ncbi Verminephrobacter eiseniae EF01-23
VCHO345073 ncbi Vibrio cholerae O3953
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169613
TTUR377629 ncbi Teredinibacter turnerae T79013
TERY203124 ncbi Trichodesmium erythraeum IMS1013
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252593
TCRU317025 ncbi Thiomicrospira crunogena XCL-23
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT24
SSP94122 ncbi Shewanella sp. ANA-33
SSP84588 ncbi Synechococcus sp. WH 81023
SSP64471 ncbi Synechococcus sp. CC93113
SSP644076 Silicibacter sp. TrichCH4B3
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)3
SSP292414 ncbi Ruegeria sp. TM10403
SSP1131 Synechococcus sp. CC96053
SSON300269 ncbi Shigella sonnei Ss0464
SSED425104 ncbi Shewanella sediminis HAW-EB33
SPRO399741 ncbi Serratia proteamaculans 5684
SPEA398579 ncbi Shewanella pealeana ATCC 7003453
SONE211586 ncbi Shewanella oneidensis MR-13
SMEL266834 ncbi Sinorhizobium meliloti 10213
SMED366394 ncbi Sinorhizobium medicae WSM4193
SLOI323850 ncbi Shewanella loihica PV-43
SLAC55218 Ruegeria lacuscaerulensis3
SHIGELLA ncbi Shigella flexneri 2a str. 2457T4
SHAL458817 ncbi Shewanella halifaxensis HAW-EB43
SGLO343509 ncbi Sodalis glossinidius morsitans4
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB3
SFLE373384 ncbi Shigella flexneri 5 str. 84014
SFLE198214 ncbi Shigella flexneri 2a str. 3014
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4764
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B674
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91504
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT184
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty24
SELO269084 ncbi Synechococcus elongatus PCC 63013
SDYS300267 ncbi Shigella dysenteriae Sd1974
SDEN318161 ncbi Shewanella denitrificans OS2173
SDEG203122 ncbi Saccharophagus degradans 2-403
SBOY300268 ncbi Shigella boydii Sb2274
SBAL402882 ncbi Shewanella baltica OS1853
SBAL399599 ncbi Shewanella baltica OS1953
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170253
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170293
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.13
RSOL267608 ncbi Ralstonia solanacearum GMI10003
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111703
RPOM246200 ncbi Ruegeria pomeroyi DSS-33
RPAL316058 ncbi Rhodopseudomonas palustris HaA23
RPAL316057 ncbi Rhodopseudomonas palustris BisB53
RPAL316056 ncbi Rhodopseudomonas palustris BisB183
RPAL316055 ncbi Rhodopseudomonas palustris BisA533
RPAL258594 ncbi Rhodopseudomonas palustris CGA0093
RMET266264 ncbi Ralstonia metallidurans CH343
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38413
RFER338969 ncbi Rhodoferax ferrireducens T1183
REUT381666 ncbi Ralstonia eutropha H163
REUT264198 ncbi Ralstonia eutropha JMP1343
RETL347834 ncbi Rhizobium etli CFN 423
RDEN375451 ncbi Roseobacter denitrificans OCh 1143
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30003
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a3
PSTU379731 ncbi Pseudomonas stutzeri A15013
PSP56811 Psychrobacter sp.3
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-13
PSP296591 ncbi Polaromonas sp. JS6663
PRUM264731 ncbi Prevotella ruminicola 233
PPUT76869 ncbi Pseudomonas putida GB-13
PPUT351746 ncbi Pseudomonas putida F13
PPUT160488 ncbi Pseudomonas putida KT24403
PPRO298386 ncbi Photobacterium profundum SS93
PNAP365044 ncbi Polaromonas naphthalenivorans CJ23
PMUL272843 ncbi Pasteurella multocida multocida Pm703
PMEN399739 ncbi Pseudomonas mendocina ymp3
PMAR74547 ncbi Prochlorococcus marinus MIT 93133
PMAR59920 ncbi Prochlorococcus marinus NATL2A3
PMAR167555 ncbi Prochlorococcus marinus NATL1A3
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13753
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO14
PING357804 ncbi Psychromonas ingrahamii 373
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1253
PFLU220664 ncbi Pseudomonas fluorescens Pf-53
PFLU216595 ncbi Pseudomonas fluorescens SBW253
PFLU205922 ncbi Pseudomonas fluorescens Pf0-13
PENT384676 ncbi Pseudomonas entomophila L483
PCRY335284 ncbi Psychrobacter cryohalolentis K53
PCAR338963 ncbi Pelobacter carbinolicus DSM 23803
PATL342610 ncbi Pseudoalteromonas atlantica T6c3
PARC259536 ncbi Psychrobacter arcticus 273-43
PAER208964 ncbi Pseudomonas aeruginosa PAO13
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA143
OCAR504832 ncbi Oligotropha carboxidovorans OM53
OANT439375 ncbi Ochrobactrum anthropi ATCC 491883
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2553
NSP103690 ncbi Nostoc sp. PCC 71203
NOCE323261 ncbi Nitrosococcus oceani ATCC 197073
NMEN374833 ncbi Neisseria meningitidis 0534423
NMEN272831 ncbi Neisseria meningitidis FAM183
NMEN122587 ncbi Neisseria meningitidis Z24913
NMEN122586 ncbi Neisseria meningitidis MC583
NHAM323097 ncbi Nitrobacter hamburgensis X143
NGON242231 ncbi Neisseria gonorrhoeae FA 10903
MXAN246197 ncbi Myxococcus xanthus DK 16223
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E3
MSP409 Methylobacterium sp.3
MSP400668 ncbi Marinomonas sp. MWYL13
MSP266779 ncbi Chelativorans sp. BNC13
MPET420662 ncbi Methylibium petroleiphilum PM13
MMAR394221 ncbi Maricaulis maris MCS103
MMAG342108 ncbi Magnetospirillum magneticum AMB-13
MLOT266835 ncbi Mesorhizobium loti MAFF3030993
MFLA265072 ncbi Methylobacillus flagellatus KT3
MEXT419610 ncbi Methylobacterium extorquens PA13
MCAP243233 ncbi Methylococcus capsulatus Bath3
MAQU351348 ncbi Marinobacter aquaeolei VT83
MAER449447 ncbi Microcystis aeruginosa NIES-8433
LPNE400673 ncbi Legionella pneumophila Corby3
LPNE297246 ncbi Legionella pneumophila Paris3
LPNE297245 ncbi Legionella pneumophila Lens3
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-003
LCHO395495 ncbi Leptothrix cholodnii SP-63
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785784
JSP375286 ncbi Janthinobacterium sp. Marseille3
JSP290400 ncbi Jannaschia sp. CCS13
ILOI283942 ncbi Idiomarina loihiensis L2TR3
HSOM228400 ncbi Haemophilus somnus 23363
HSOM205914 ncbi Haemophilus somnus 129PT3
HNEP81032 Hyphomonas neptunium3
HINF71421 ncbi Haemophilus influenzae Rd KW203
HINF281310 ncbi Haemophilus influenzae 86-028NP3
HHAL349124 ncbi Halorhodospira halophila SL13
HDUC233412 ncbi Haemophilus ducreyi 35000HP3
HCHE349521 ncbi Hahella chejuensis KCTC 23963
HARS204773 ncbi Herminiimonas arsenicoxydans3
GVIO251221 ncbi Gloeobacter violaceus PCC 74213
GSUL243231 ncbi Geobacter sulfurreducens PCA3
GOXY290633 ncbi Gluconobacter oxydans 621H3
GMET269799 ncbi Geobacter metallireducens GS-153
GBET391165 ncbi Granulibacter bethesdensis CGDNIH13
FTUL401614 ncbi Francisella novicida U1123
FTUL393115 ncbi Francisella tularensis tularensis FSC1983
FRANT ncbi Francisella tularensis tularensis SCHU S43
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250173
ESP42895 Enterobacter sp.4
EFER585054 ncbi Escherichia fergusonii ATCC 354694
ECOO157 ncbi Escherichia coli O157:H7 EDL9334
ECOL83334 Escherichia coli O157:H74
ECOL585397 ncbi Escherichia coli ED1a4
ECOL585057 ncbi Escherichia coli IAI394
ECOL585056 ncbi Escherichia coli UMN0264
ECOL585055 ncbi Escherichia coli 559894
ECOL585035 ncbi Escherichia coli S884
ECOL585034 ncbi Escherichia coli IAI14
ECOL481805 ncbi Escherichia coli ATCC 87394
ECOL469008 ncbi Escherichia coli BL21(DE3)4
ECOL439855 ncbi Escherichia coli SMS-3-54
ECOL413997 ncbi Escherichia coli B str. REL6064
ECOL409438 ncbi Escherichia coli SE114
ECOL405955 ncbi Escherichia coli APEC O14
ECOL364106 ncbi Escherichia coli UTI894
ECOL362663 ncbi Escherichia coli 5364
ECOL331111 ncbi Escherichia coli E24377A4
ECOL316407 ncbi Escherichia coli K-12 substr. W31104
ECOL199310 ncbi Escherichia coli CFT0734
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10434
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough3
DSHI398580 ncbi Dinoroseobacter shibae DFL 123
DPSY177439 ncbi Desulfotalea psychrophila LSv543
DNOD246195 ncbi Dichelobacter nodosus VCS1703A3
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G203
DARO159087 ncbi Dechloromonas aromatica RCB3
CVIO243365 ncbi Chromobacterium violaceum ATCC 124723
CTEP194439 ncbi Chlorobium tepidum TLS3
CSP78 Caulobacter sp.3
CSP501479 Citreicella sp. SE453
CSAL290398 ncbi Chromohalobacter salexigens DSM 30433
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)3
CPSY167879 ncbi Colwellia psychrerythraea 34H3
CJAP155077 Cellvibrio japonicus3
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1113
CBUR360115 ncbi Coxiella burnetii RSA 3313
CBUR227377 ncbi Coxiella burnetii RSA 4933
CAULO ncbi Caulobacter crescentus CB153
BVIE269482 ncbi Burkholderia vietnamiensis G43
BTRI382640 ncbi Bartonella tribocorum CIP 1054763
BTHA271848 ncbi Burkholderia thailandensis E2643
BSUI470137 ncbi Brucella suis ATCC 234453
BSUI204722 ncbi Brucella suis 13303
BSP376 Bradyrhizobium sp.3
BSP36773 Burkholderia sp.3
BQUI283165 ncbi Bartonella quintana Toulouse3
BPSE320373 ncbi Burkholderia pseudomallei 6683
BPSE320372 ncbi Burkholderia pseudomallei 1710b3
BPSE272560 ncbi Burkholderia pseudomallei K962433
BPET94624 Bordetella petrii3
BPER257313 ncbi Bordetella pertussis Tohama I3
BPAR257311 ncbi Bordetella parapertussis 128223
BOVI236 Brucella ovis3
BMEL359391 ncbi Brucella melitensis biovar Abortus 23083
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M3
BMAL320389 ncbi Burkholderia mallei NCTC 102473
BMAL320388 ncbi Burkholderia mallei SAVP13
BMAL243160 ncbi Burkholderia mallei ATCC 233443
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1103
BHEN283166 ncbi Bartonella henselae Houston-13
BFRA295405 ncbi Bacteroides fragilis YCH463
BFRA272559 ncbi Bacteroides fragilis NCTC 93433
BCEN331272 ncbi Burkholderia cenocepacia HI24243
BCEN331271 ncbi Burkholderia cenocepacia AU 10543
BCAN483179 ncbi Brucella canis ATCC 233653
BBRO257310 ncbi Bordetella bronchiseptica RB503
BBAC360095 ncbi Bartonella bacilliformis KC5833
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1003
BAMB398577 ncbi Burkholderia ambifaria MC40-63
BAMB339670 ncbi Burkholderia ambifaria AMMD3
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9413
AVAR240292 ncbi Anabaena variabilis ATCC 294133
ASP76114 ncbi Aromatoleum aromaticum EbN13
ASP62977 ncbi Acinetobacter sp. ADP13
ASP62928 ncbi Azoarcus sp. BH723
ASP232721 ncbi Acidovorax sp. JS423
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4493
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL033
APLE416269 ncbi Actinobacillus pleuropneumoniae L203
AMAR329726 ncbi Acaryochloris marina MBIC110173
AHYD196024 Aeromonas hydrophila dhakensis3
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232703
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-13
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C3
ACRY349163 ncbi Acidiphilium cryptum JF-53
ACAU438753 ncbi Azorhizobium caulinodans ORS 5713
ABOR393595 ncbi Alcanivorax borkumensis SK23
ABAU360910 ncbi Bordetella avium 197N3
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3453
AAVE397945 ncbi Acidovorax citrulli AAC00-13


Names of the homologs of the genes in the group in each of these orgs
  EG11087   EG10936   EG10626   EG10265   
YPSE349747 YPSIP31758_3379YPSIP31758_3378YPSIP31758_3377YPSIP31758_3381
YPSE273123 YPTB0696YPTB0697YPTB0698YPTB0694
YPES386656 YPDSF_3079YPDSF_3078YPDSF_3077YPDSF_3081
YPES377628 YPN_0429YPN_0430YPN_0431YPN_0427
YPES360102 YPA_3538YPA_3537YPA_3536YPA_3540
YPES349746 YPANGOLA_A2910YPANGOLA_A2909YPANGOLA_A2908YPANGOLA_A2912
YPES214092 YPO0563YPO0564YPO0565YPO0561
YPES187410 Y3618Y3617Y3616Y3620
YENT393305 YE0680YE0681YE0682YE0678
XORY360094 XOOORF_1087XOOORF_1089XOOORF_1085
XORY342109 XOO3595XOO3593XOO3598
XORY291331 XOO3818XOO3816XOO3821
XFAS405440 XFASM12_2039XFASM12_0465XFASM12_2042
XFAS183190 PD_1857PD_0412PD_1860
XFAS160492 XF0806XF1120XF0803
XCAM487884 XCC-B100_3622XCC-B100_3619XCC-B100_3625
XCAM316273 XCAORF_0903XCAORF_0906XCAORF_0899
XCAM314565 XC_3501XC_3499XC_3504
XCAM190485 XCC0734XCC0736XCC0731
XAXO190486 XAC0788XAC0789XAC0785
VVUL216895 VV1_0569VV1_0568VV1_0571
VVUL196600 VV0621VV0622VV0619
VPAR223926 VP0467VP0468VP0465
VFIS312309 VF2193VF2192VF2195
VEIS391735 VEIS_3928VEIS_3925VEIS_1529
VCHO345073 VC0395_A1972VC0395_A1971VC0395_A1974
VCHO VC2394VC2392VC2396
TTUR377629 TERTU_3041TERTU_3038TERTU_3043
TERY203124 TERY_4635TERY_4056TERY_3318
TDEN292415 TBD_0131TBD_0027TBD_0126
TCRU317025 TCR_0589TCR_0592TCR_0588
STYP99287 STM0135STM0136STM0137STM0134
SSP94122 SHEWANA3_3735SHEWANA3_0413SHEWANA3_3738
SSP84588 SYNW0086OR1168SYNW0115OR1190SYNW0556OR1502
SSP64471 GSYN0095GSYN0111GSYN2350
SSP644076 SCH4B_3241SCH4B_3238SCH4B_4011
SSP321332 CYB_2451CYB_0752CYB_2785
SSP292414 TM1040_2917TM1040_2914TM1040_0690
SSP1131 SYNCC9605_0081SYNCC9605_0099SYNCC9605_2118
SSON300269 SSO_0105SSO_0106SSO_0107SSO_0104
SSED425104 SSED_0418SSED_0419SSED_0415
SPRO399741 SPRO_0769SPRO_0770SPRO_0771SPRO_0767
SPEA398579 SPEA_3803SPEA_0407SPEA_3806
SONE211586 SO_4211SO_0410SO_4214
SMEL266834 SMC04458SMC02448SMC01875
SMED366394 SMED_2518SMED_2514SMED_2073
SLOI323850 SHEW_3445SHEW_3444SHEW_3448
SLAC55218 SL1157_1144SL1157_1148SL1157_3403
SHIGELLA YACASECAMUTTLPXC
SHAL458817 SHAL_0463SHAL_0464SHAL_0460
SGLO343509 SG0456SG0457SG0458SG0454
SFUM335543 SFUM_1202SFUM_2733SFUM_1931
SFLE373384 SFV_0090SFV_0091SFV_0092SFV_0089
SFLE198214 AAN41759.1AAN41760.1AAN41761.1AAN41758.1
SENT454169 SEHA_C0147SEHA_C0148SEHA_C0149SEHA_C0146
SENT321314 SCH_0132SCH_0133SCH_0134SCH_0131
SENT295319 SPA0137SPA0138SPA0139SPA0136
SENT220341 STY0155STY0156STY0157STY0154
SENT209261 T0139T0140T0141T0138
SELO269084 SYC1223_CSYC0856_CSYC0613_C
SDYS300267 SDY_0127SDY_0128SDY_0129SDY_0126
SDEN318161 SDEN_0363SDEN_3395SDEN_0360
SDEG203122 SDE_0856SDE_0858SDE_0854
SBOY300268 SBO_0085SBO_0086SBO_0087SBO_0083
SBAL402882 SHEW185_0409SHEW185_3948SHEW185_0406
SBAL399599 SBAL195_0421SBAL195_4066SBAL195_0418
RSPH349102 RSPH17025_2761RSPH17025_2758RSPH17025_0701
RSPH349101 RSPH17029_2831RSPH17029_2828RSPH17029_0791
RSPH272943 RSP_1169RSP_1166RSP_2115
RSOL267608 RSC2834RSC2831RSC2837
RRUB269796 RRU_A0235RRU_A0393RRU_A0943
RPOM246200 SPO_0057SPO_0060SPO_1205
RPAL316058 RPB_0530RPB_0029RPB_2005
RPAL316057 RPD_0299RPD_0110RPD_3385
RPAL316056 RPC_0526RPC_0523RPC_3297
RPAL316055 RPE_0146RPE_0149RPE_2117
RPAL258594 RPA0510RPA0594RPA3521
RMET266264 RMET_3118RMET_3115RMET_3121
RLEG216596 RL4298RL4294RL3297
RFER338969 RFER_2911RFER_1273RFER_3414
REUT381666 H16_A3264H16_A3261H16_A3266
REUT264198 REUT_A2970REUT_A2967REUT_A2972
RETL347834 RHE_CH03770RHE_CH03766RHE_CH02839
RDEN375451 RD1_0382RD1_0385RD1_3346
PSYR223283 PSPTO_4400PSPTO_4397PSPTO_4402
PSYR205918 PSYR_4094PSYR_4091PSYR_4096
PSTU379731 PST_3166PST_3163PST_1088
PSP56811 PSYCPRWF_2016PSYCPRWF_1921PSYCPRWF_0530
PSP312153 PNUC_0176PNUC_0181PNUC_0174
PSP296591 BPRO_0828BPRO_0831BPRO_1081
PRUM264731 GFRORF0865GFRORF0664GFRORF0707
PPUT76869 PPUTGB1_4504PPUTGB1_4501PPUTGB1_4506
PPUT351746 PPUT_4379PPUT_4376PPUT_4381
PPUT160488 PP_1345PP_1348PP_1343
PPRO298386 PBPRA3208PBPRA3207PBPRA3210
PNAP365044 PNAP_0738PNAP_0741PNAP_3411
PMUL272843 PM1219PM1218PM0148
PMEN399739 PMEN_0931PMEN_0934PMEN_0928
PMAR74547 PMT0083PMT0135PMT1412
PMAR59920 PMN2A_1220PMN2A_1205PMN2A_0908
PMAR167555 NATL1_20951NATL1_20801NATL1_17641
PMAR167539 PRO_1801PRO_1789PRO_1418
PLUM243265 PLU3646PLU3645PLU3644PLU3648
PING357804 PING_1155PING_1156PING_1153
PHAL326442 PSHAA2743PSHAA2744PSHAA2498
PFLU220664 PFL_4781PFL_4779PFL_5055
PFLU216595 PFLU4933PFLU4931PFLU0953
PFLU205922 PFL_4428PFL_4425PFL_4667
PENT384676 PSEEN4477PSEEN4474PSEEN4479
PCRY335284 PCRYO_0274PCRYO_1686PCRYO_2026
PCAR338963 PCAR_2323PCAR_2360PCAR_2343
PATL342610 PATL_3511PATL_3510PATL_3513
PARC259536 PSYC_0248PSYC_1507PSYC_1744
PAER208964 PA4403PA4400PA4406
PAER208963 PA14_57220PA14_57190PA14_57260
OCAR504832 OCAR_4082OCAR_4086OCAR_5251
OANT439375 OANT_1021OANT_1025OANT_1751
NWIN323098 NWI_0390NWI_0387NWI_1059
NSP103690 ALR4851ALR3812ALR2270
NOCE323261 NOC_2851NOC_0306NOC_2854
NMEN374833 NMCC_1444NMCC_1691NMCC_0020
NMEN272831 NMC1464NMC1699NMC0001
NMEN122587 NMA1735NMA2032NMA0263
NMEN122586 NMB_1536NMB_0453NMB_0017
NHAM323097 NHAM_0485NHAM_0482NHAM_1287
NGON242231 NGO0996NGO1334NGO2065
MXAN246197 MXAN_5345MXAN_4335MXAN_4967
MSUC221988 MS0327MS0328MS1659
MSP409 M446_1791M446_4811M446_6696
MSP400668 MMWYL1_2607MMWYL1_2605MMWYL1_2608
MSP266779 MESO_3014MESO_3010MESO_2000
MPET420662 MPE_A2744MPE_A0503MPE_A0468
MMAR394221 MMAR10_2268MMAR10_2266MMAR10_2069
MMAG342108 AMB3900AMB0509AMB3855
MLOT266835 MLR3468MLL3459MLL1545
MFLA265072 MFLA_2234MFLA_2230MFLA_2262
MEXT419610 MEXT_1478MEXT_0312MEXT_2950
MCAP243233 MCA_1680MCA_1678MCA_2422
MAQU351348 MAQU_2443MAQU_2441MAQU_2446
MAER449447 MAE_31960MAE_00950MAE_39220
LPNE400673 LPC_0878LPC_0879LPC_0533
LPNE297246 LPP1419LPP1420LPP2661
LPNE297245 LPL1565LPL1564LPL2531
LINT363253 LI0630LI0579LI0627
LCHO395495 LCHO_0745LCHO_0544LCHO_0528
KPNE272620 GKPORF_B4381GKPORF_B4382GKPORF_B4383GKPORF_B4380
JSP375286 MMA_3005MMA_3002MMA_3008
JSP290400 JANN_0289JANN_0292JANN_2749
ILOI283942 IL0445IL0446IL0442
HSOM228400 HSM_1468HSM_1469HSM_0634
HSOM205914 HS_0990HS_0991HS_0364
HNEP81032 HNE_3176HNE_3173HNE_0389
HINF71421 HI_0909HI_0910HI_1144
HINF281310 NTHI1076NTHI1077NTHI1312
HHAL349124 HHAL_2027HHAL_2025HHAL_2084
HDUC233412 HD_1788HD_1786HD_0816
HCHE349521 HCH_05873HCH_05871HCH_05876
HARS204773 HEAR2798HEAR2795HEAR2803
GVIO251221 GLL1836GLR0869GLR1865
GSUL243231 GSU_2050GSU_0870GSU_0731
GOXY290633 GOX1678GOX1794GOX0165
GMET269799 GMET_0951GMET_1170GMET_2607
GBET391165 GBCGDNIH1_0622GBCGDNIH1_0625GBCGDNIH1_0422
FTUL401614 FTN_0672FTN_0865FTN_0165
FTUL393115 FTF0769FTF0984CFTF0189
FRANT SECAMUTTLPXC
FPHI484022 FPHI_0149FPHI_1755FPHI_0658
ESP42895 ENT638_0643ENT638_0644ENT638_0645ENT638_0642
EFER585054 EFER_0119EFER_0120EFER_0121EFER_0118
ECOO157 YACASECAMUTTLPXC
ECOL83334 ECS0101ECS0102ECS0103ECS0100
ECOL585397 ECED1_0098ECED1_0099ECED1_0100ECED1_0097
ECOL585057 ECIAI39_0100ECIAI39_0101ECIAI39_0102ECIAI39_0099
ECOL585056 ECUMN_0097ECUMN_0098ECUMN_0099ECUMN_0096
ECOL585055 EC55989_0093EC55989_0094EC55989_0095EC55989_0092
ECOL585035 ECS88_0101ECS88_0102ECS88_0103ECS88_0100
ECOL585034 ECIAI1_0097ECIAI1_0098ECIAI1_0099ECIAI1_0096
ECOL481805 ECOLC_3560ECOLC_3559ECOLC_3558ECOLC_3561
ECOL469008 ECBD_3520ECBD_3519ECBD_3518ECBD_3521
ECOL439855 ECSMS35_0102ECSMS35_0103ECSMS35_0104ECSMS35_0101
ECOL413997 ECB_00098ECB_00099ECB_00100ECB_00097
ECOL409438 ECSE_0099ECSE_0100ECSE_0101ECSE_0098
ECOL405955 APECO1_1889APECO1_1888APECO1_1887APECO1_1890
ECOL364106 UTI89_C0106UTI89_C0107UTI89_C0108UTI89_C0105
ECOL362663 ECP_0099ECP_0100ECP_0101ECP_0098
ECOL331111 ECE24377A_0099ECE24377A_0100ECE24377A_0101ECE24377A_0098
ECOL316407 ECK0098:JW5007:B0097ECK0099:JW0096:B0098ECK0100:JW0097:B0099ECK0097:JW0094:B0096
ECOL199310 C0115C0116C0117C0114
ECAR218491 ECA3807ECA3806ECA3805ECA3809
DVUL882 DVU_0825DVU_3051DVU_2917
DSHI398580 DSHI_3567DSHI_3564DSHI_2415
DPSY177439 DP2750DP2521DP1939
DNOD246195 DNO_0973DNO_0972DNO_0975
DDES207559 DDE_1082DDE_0251DDE_2986
DARO159087 DARO_3488DARO_3706DARO_3492
CVIO243365 CV_4281CV_3611CV_4337
CTEP194439 CT_1239CT_0687CT_1662
CSP78 CAUL_0922CAUL_0937CAUL_3101
CSP501479 CSE45_3576CSE45_3573CSE45_2530
CSAL290398 CSAL_2181CSAL_2179CSAL_2184
CRUT413404 RMAG_0013RMAG_1016RMAG_0444
CPSY167879 CPS_4454CPS_4453CPS_4457
CJAP155077 CJA_2919CJA_2917CJA_2921
CBUR434922 COXBU7E912_1958COXBU7E912_1957COXBU7E912_1965
CBUR360115 COXBURSA331_A0239COXBURSA331_A0240COXBURSA331_A0231
CBUR227377 CBU_0147CBU_0148CBU_0142
CAULO CC3068CC0833CC1985
BVIE269482 BCEP1808_0544BCEP1808_0547BCEP1808_0542
BTRI382640 BT_0217BT_0220BT_1584
BTHA271848 BTH_I1127BTH_I1130BTH_I1125
BSUI470137 BSUIS_A1785BSUIS_A1779BSUIS_A1475
BSUI204722 BR_1945BR_1939BR_1424
BSP376 BRADO0590BRADO0585BRADO5652
BSP36773 BCEP18194_A3654BCEP18194_A3657BCEP18194_A3652
BQUI283165 BQ01870BQ01900BQ08790
BPSE320373 BURPS668_3515BURPS668_3512BURPS668_3517
BPSE320372 BURPS1710B_A3818BURPS1710B_A3815BURPS1710B_A3821
BPSE272560 BPSL3016BPSL3013BPSL3018
BPET94624 BPET0706BPET0539BPET0703
BPER257313 BP3014BP3809BP3017
BPAR257311 BPP3743BPP3955BPP3746
BOVI236 GBOORF1940GBOORF1935GBOORF1438
BMEL359391 BAB1_1946BAB1_1940BAB1_1443
BMEL224914 BMEI0121BMEI0126BMEI0586
BMAL320389 BMA10247_3242BMA10247_3245BMA10247_3240
BMAL320388 BMASAVP1_A0462BMASAVP1_A0459BMASAVP1_A0464
BMAL243160 BMA_2540BMA_2537BMA_2543
BJAP224911 BLL0204BLR0207BLL6595
BHEN283166 BH01990BH02020BH11170
BFRA295405 BF1068BF3077BF0906
BFRA272559 BF0983BF2916BF0828
BCEN331272 BCEN2424_0569BCEN2424_0572BCEN2424_0566
BCEN331271 BCEN_0087BCEN_0090BCEN_0084
BCAN483179 BCAN_A1989BCAN_A1983BCAN_A1457
BBRO257310 BB4189BB4428BB4192
BBAC360095 BARBAKC583_0361BARBAKC583_0364BARBAKC583_0940
BBAC264462 BD0272BD0714BD2484
BAMB398577 BAMMC406_0497BAMMC406_0500BAMMC406_0495
BAMB339670 BAMB_0472BAMB_0475BAMB_0470
BABO262698 BRUAB1_1921BRUAB1_1915BRUAB1_1419
AVAR240292 AVA_2124AVA_1890AVA_0095
ASP76114 EBA1433EBA4102EBA1436
ASP62977 ACIAD0648ACIAD2236ACIAD3510
ASP62928 AZO0893AZO0728AZO0890
ASP232721 AJS_0796AJS_0799AJS_3663
ASAL382245 ASA_0405ASA_0407ASA_0403
APLE434271 APJL_0244APJL_0246APJL_0025
APLE416269 APL_0239APL_0241APL_0024
AMAR329726 AM1_1087AM1_3918AM1_0586
AHYD196024 AHA_3877AHA_3875AHA_3879
AFER243159 AFE_2803AFE_2801AFE_2805
AEHR187272 MLG_2086MLG_2084MLG_2186
ADEH290397 ADEH_0736ADEH_1775ADEH_0955
ACRY349163 ACRY_2246ACRY_1547ACRY_0552
ACAU438753 AZC_3307AZC_0315AZC_4565
ABOR393595 ABO_0607ABO_0609ABO_0604
ABAU360910 BAV2869BAV3038BAV2873
ABAC204669 ACID345_2855ACID345_2654ACID345_0085
AAVE397945 AAVE_3689AAVE_3686AAVE_0827


Organism features enriched in list (features available for 242 out of the 259 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 2.943e-61992
Arrangment:Singles 0.0037687133286
Disease:Bubonic_plague 0.004931366
Disease:Dysentery 0.004931366
Disease:Gastroenteritis 0.00152391113
Endospores:No 2.270e-1642211
Endospores:Yes 6.973e-11253
GC_Content_Range4:0-40 3.817e-3224213
GC_Content_Range4:40-60 9.352e-11130224
GC_Content_Range4:60-100 4.151e-888145
GC_Content_Range7:30-40 2.028e-1824166
GC_Content_Range7:50-60 2.792e-1378107
GC_Content_Range7:60-70 2.924e-1087134
Genome_Size_Range5:0-2 1.427e-2216155
Genome_Size_Range5:2-4 0.000810465197
Genome_Size_Range5:4-6 4.106e-20127184
Genome_Size_Range5:6-10 6.421e-63447
Genome_Size_Range9:1-2 1.411e-1516128
Genome_Size_Range9:2-3 0.000334034120
Genome_Size_Range9:4-5 9.897e-96596
Genome_Size_Range9:5-6 1.955e-96288
Genome_Size_Range9:6-8 1.136e-63038
Gram_Stain:Gram_Neg 2.481e-42215333
Habitat:Multiple 0.009386985178
Habitat:Specialized 0.00017061053
Motility:No 9.783e-1327151
Motility:Yes 3.894e-9145267
Optimal_temp.:25-30 1.047e-61819
Optimal_temp.:35-37 8.953e-61313
Oxygen_Req:Aerobic 0.006415689185
Oxygen_Req:Anaerobic 7.898e-1016102
Oxygen_Req:Facultative 0.0000992104201
Pathogenic_in:Plant 0.00942181115
Salinity:Non-halophilic 0.004799333106
Shape:Coccobacillus 0.00088991011
Shape:Coccus 1.127e-61582
Shape:Rod 1.817e-16191347
Shape:Spiral 0.0000991434
Temp._range:Mesophilic 0.0005425211473
Temp._range:Psychrophilic 0.000334999
Temp._range:Thermophilic 0.0000103335



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 286
Effective number of orgs (counting one per cluster within 468 clusters): 219

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM41
WSUC273121 ncbi Wolinella succinogenes DSM 17401
WPIP955 Wolbachia pipientis1
WPIP80849 Wolbachia endosymbiont of Brugia malayi1
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTHE300852 ncbi Thermus thermophilus HB81
TTHE262724 ncbi Thermus thermophilus HB271
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB40
TSP28240 Thermotoga sp.1
TSP1755 Thermoanaerobacter sp.0
TROS309801 ncbi Thermomicrobium roseum DSM 51590
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332230
TPET390874 ncbi Thermotoga petrophila RKU-11
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols1
TMAR243274 ncbi Thermotoga maritima MSB81
TLET416591 ncbi Thermotoga lettingae TMO1
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12511
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen0
STOK273063 ncbi Sulfolobus tokodaii 70
STHE322159 ncbi Streptococcus thermophilus LMD-90
STHE299768 ncbi Streptococcus thermophilus CNRZ10660
STHE264199 ncbi Streptococcus thermophilus LMG 183110
SSUI391296 ncbi Streptococcus suis 98HAH330
SSUI391295 ncbi Streptococcus suis 05ZYH330
SSP387093 ncbi Sulfurovum sp. NBC37-11
SSOL273057 ncbi Sulfolobus solfataricus P20
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153050
SRUB309807 ncbi Salinibacter ruber DSM 138551
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370552 ncbi Streptococcus pyogenes MGAS102700
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103940
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SPNE488221 ncbi Streptococcus pneumoniae 705850
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-60
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-140
SPNE171101 ncbi Streptococcus pneumoniae R60
SPNE170187 ncbi Streptococcus pneumoniae G540
SPNE1313 Streptococcus pneumoniae0
SMUT210007 ncbi Streptococcus mutans UA1590
SMAR399550 ncbi Staphylothermus marinus F10
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14350
SGOR29390 Streptococcus gordonii Challis0
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23380
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122280
SEPI176279 ncbi Staphylococcus epidermidis RP62A0
SCO ncbi Streptomyces coelicolor A3(2)1
SAUR93062 ncbi Staphylococcus aureus aureus COL0
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83250
SAUR426430 ncbi Staphylococcus aureus aureus Newman0
SAUR418127 ncbi Staphylococcus aureus aureus Mu31
SAUR367830 Staphylococcus aureus aureus USA3000
SAUR359787 ncbi Staphylococcus aureus aureus JH11
SAUR359786 ncbi Staphylococcus aureus aureus JH91
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4761
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2520
SAUR273036 ncbi Staphylococcus aureus RF1220
SAUR196620 ncbi Staphylococcus aureus aureus MW21
SAUR158879 ncbi Staphylococcus aureus aureus N3151
SAUR158878 ncbi Staphylococcus aureus aureus Mu501
SARE391037 ncbi Salinispora arenicola CNS-2051
SAGA211110 ncbi Streptococcus agalactiae NEM3160
SAGA208435 ncbi Streptococcus agalactiae 2603V/R0
SAGA205921 ncbi Streptococcus agalactiae A9090
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99410
RSP357808 ncbi Roseiflexus sp. RS-11
RSP101510 ncbi Rhodococcus jostii RHA11
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332090
RCAS383372 ncbi Roseiflexus castenholzii DSM 139411
RALB246199 Ruminococcus albus 81
PTOR263820 ncbi Picrophilus torridus DSM 97900
PTHE370438 ncbi Pelotomaculum thermopropionicum SI1
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257450
PMOB403833 ncbi Petrotoga mobilis SJ950
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PHOR70601 ncbi Pyrococcus horikoshii OT30
PGIN242619 ncbi Porphyromonas gingivalis W831
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PAER178306 ncbi Pyrobaculum aerophilum IM20
PACN267747 ncbi Propionibacterium acnes KPA1712021
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong1
OIHE221109 ncbi Oceanobacillus iheyensis HTE8310
NSEN222891 ncbi Neorickettsia sennetsu Miyayama1
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
NFAR247156 ncbi Nocardia farcinica IFM 101520
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-11
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra1
MTUB336982 ncbi Mycobacterium tuberculosis F111
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE264732 ncbi Moorella thermoacetica ATCC 390731
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MTBRV ncbi Mycobacterium tuberculosis H37Rv1
MTBCDC ncbi Mycobacterium tuberculosis CDC15511
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30911
MSP189918 ncbi Mycobacterium sp. KMS1
MSP164757 ncbi Mycobacterium sp. JLS1
MSP164756 ncbi Mycobacterium sp. MCS1
MSME246196 ncbi Mycobacterium smegmatis MC2 1551
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MLEP272631 ncbi Mycobacterium leprae TN1
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK1
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P21
MBOV233413 ncbi Mycobacterium bovis AF2122/971
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MAVI243243 ncbi Mycobacterium avium 1041
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A1
MABS561007 ncbi Mycobacterium abscessus ATCC 199771
LXYL281090 ncbi Leifsonia xyli xyli CTCB071
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53340
LSPH444177 ncbi Lysinibacillus sphaericus C3-411
LSAK314315 ncbi Lactobacillus sakei sakei 23K1
LREU557436 ncbi Lactobacillus reuteri DSM 200161
LPLA220668 ncbi Lactobacillus plantarum WCFS10
LMON265669 ncbi Listeria monocytogenes 4b F23650
LMON169963 ncbi Listeria monocytogenes EGD-e0
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82931
LLAC272623 ncbi Lactococcus lactis lactis Il14031
LLAC272622 ncbi Lactococcus lactis cremoris SK111
LJOH257314 ncbi Lactobacillus johnsonii NCC 5331
LINN272626 ncbi Listeria innocua Clip112620
LHEL405566 ncbi Lactobacillus helveticus DPC 45711
LGAS324831 ncbi Lactobacillus gasseri ATCC 333231
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118421
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3651
LCAS321967 ncbi Lactobacillus casei ATCC 3341
LBRE387344 ncbi Lactobacillus brevis ATCC 3670
KRAD266940 ncbi Kineococcus radiotolerans SRS302161
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSAL478009 ncbi Halobacterium salinarum R10
HPYL85963 ncbi Helicobacter pylori J991
HPYL357544 ncbi Helicobacter pylori HPAG11
HPY ncbi Helicobacter pylori 266951
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMOD498761 ncbi Heliobacterium modesticaldum Ice11
HMAR272569 ncbi Haloarcula marismortui ATCC 430490
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237791
HACI382638 ncbi Helicobacter acinonychis Sheeba1
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-21
GKAU235909 ncbi Geobacillus kaustophilus HTA4261
GFOR411154 ncbi Gramella forsetii KT08031
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S851
FSP1855 Frankia sp. EAN1pec1
FSP106370 ncbi Frankia sp. CcI30
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B11
FMAG334413 ncbi Finegoldia magna ATCC 293281
FJOH376686 ncbi Flavobacterium johnsoniae UW1011
FALN326424 ncbi Frankia alni ACN14a0
ERUM302409 ncbi Ehrlichia ruminantium Gardel1
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden1
ELIT314225 ncbi Erythrobacter litoralis HTCC25941
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas1
ECAN269484 ncbi Ehrlichia canis Jake1
DSP255470 ncbi Dehalococcoides sp. CBDB11
DSP216389 ncbi Dehalococcoides sp. BAV11
DGEO319795 ncbi Deinococcus geothermalis DSM 113001
DETH243164 ncbi Dehalococcoides ethenogenes 1951
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis1
CTRA471472 ncbi Chlamydia trachomatis 434/Bu1
CTET212717 ncbi Clostridium tetani E881
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CPNE182082 ncbi Chlamydophila pneumoniae TW-1831
CPNE138677 ncbi Chlamydophila pneumoniae J1381
CPNE115713 ncbi Chlamydophila pneumoniae CWL0291
CPNE115711 ncbi Chlamydophila pneumoniae AR391
CPER195102 ncbi Clostridium perfringens 131
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10621
CNOV386415 ncbi Clostridium novyi NT1
CMUR243161 ncbi Chlamydia muridarum Nigg1
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CKLU431943 ncbi Clostridium kluyveri DSM 5550
CJEJ407148 ncbi Campylobacter jejuni jejuni 811161
CJEJ360109 ncbi Campylobacter jejuni doylei 269.971
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1761
CJEJ195099 ncbi Campylobacter jejuni RM12211
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111681
CJEI306537 ncbi Corynebacterium jeikeium K4111
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3811
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130321
CFET360106 ncbi Campylobacter fetus fetus 82-401
CEFF196164 ncbi Corynebacterium efficiens YS-3141
CDIF272563 ncbi Clostridium difficile 6301
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C0
CCUR360105 ncbi Campylobacter curvus 525.921
CCON360104 ncbi Campylobacter concisus 138261
CCAV227941 ncbi Chlamydophila caviae GPIC1
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto1
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6571
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B1
CBOT498213 ncbi Clostridium botulinum B1 str. Okra1
CBOT441772 ncbi Clostridium botulinum F str. Langeland0
CBOT441771 ncbi Clostridium botulinum A str. Hall1
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193971
CBOT36826 Clostridium botulinum A1
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80521
CACE272562 ncbi Clostridium acetobutylicum ATCC 8241
BXEN266265 ncbi Burkholderia xenovorans LB4000
BWEI315730 ncbi Bacillus weihenstephanensis KBAB40
BTUR314724 ncbi Borrelia turicatae 91E1351
BTHU412694 ncbi Bacillus thuringiensis Al Hakam0
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-270
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54821
BSUB ncbi Bacillus subtilis subtilis 1680
BPUM315750 ncbi Bacillus pumilus SAFR-0321
BLON206672 ncbi Bifidobacterium longum NCC27051
BLIC279010 ncbi Bacillus licheniformis ATCC 145801
BHER314723 ncbi Borrelia hermsii DAH1
BHAL272558 ncbi Bacillus halodurans C-1250
BGAR290434 ncbi Borrelia garinii PBi1
BCLA66692 ncbi Bacillus clausii KSM-K160
BCIC186490 Candidatus Baumannia cicadellinicola1
BCER572264 ncbi Bacillus cereus 03BB1020
BCER405917 Bacillus cereus W1
BCER315749 ncbi Bacillus cytotoxicus NVH 391-981
BCER288681 ncbi Bacillus cereus E33L0
BCER226900 ncbi Bacillus cereus ATCC 145791
BBUR224326 ncbi Borrelia burgdorferi B311
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)1
BANT592021 ncbi Bacillus anthracis A02480
BANT568206 ncbi Bacillus anthracis CDC 6840
BANT261594 ncbi Bacillus anthracis Ames Ancestor0
BANT260799 ncbi Bacillus anthracis Sterne0
BAMY326423 ncbi Bacillus amyloliquefaciens FZB421
BAFZ390236 ncbi Borrelia afzelii PKo1
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP1667 Arthrobacter sp.1
APHA212042 ncbi Anaplasma phagocytophilum HZ1
APER272557 ncbi Aeropyrum pernix K10
AORE350688 ncbi Alkaliphilus oremlandii OhILAs0
ANAE240017 Actinomyces oris MG11
AMET293826 ncbi Alkaliphilus metalliredigens QYMF1
AMAR234826 ncbi Anaplasma marginale St. Maries1
ALAI441768 ncbi Acholeplasma laidlawii PG-8A1
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
ACEL351607 ncbi Acidothermus cellulolyticus 11B1
ABUT367737 ncbi Arcobacter butzleri RM40181
AAUR290340 ncbi Arthrobacter aurescens TC11


Names of the homologs of the genes in the group in each of these orgs
  EG11087   EG10936   EG10626   EG10265   
ZMOB264203 ZMO0924
WSUC273121 WS2013
WPIP955 WD_0549
WPIP80849 WB_0416
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496
TWHI203267
TVOL273116
TTHE300852 TTHA1251
TTHE262724 TT_C0887
TTEN273068
TSP28240 TRQ2_1241
TSP1755
TROS309801
TPSE340099
TPET390874 TPET_1214
TPEN368408
TPAL243276 TP_0379
TMAR243274 TM_1578
TLET416591 TLET_0698
TKOD69014
TDEN326298 TMDEN_0672
TACI273075
SWOL335541
STOK273063
STHE322159
STHE299768
STHE264199
SSUI391296
SSUI391295
SSP387093 SUN_1975
SSOL273057
SSAP342451
SRUB309807 SRU_2119
SPYO370554
SPYO370553
SPYO370552
SPYO370551
SPYO319701
SPYO293653
SPYO286636
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SPNE488221
SPNE487214
SPNE487213
SPNE171101
SPNE170187
SPNE1313
SMUT210007
SMAR399550
SHAE279808
SGOR29390
SERY405948
SEPI176280
SEPI176279
SCO SCO5102
SAUR93062
SAUR93061
SAUR426430
SAUR418127 SAHV_2474
SAUR367830
SAUR359787 SAURJH1_2568
SAUR359786 SAURJH9_2516
SAUR282459 SAS2377
SAUR282458
SAUR273036
SAUR196620 MW2410
SAUR158879 SA2278
SAUR158878 SAV2490
SARE391037 SARE_0910
SAGA211110
SAGA208435
SAGA205921
SACI330779
RXYL266117
RSP357808 ROSERS_0823
RSP101510 RHA1_RO06329
RSAL288705
RCAS383372 RCAS_0657
RALB246199 GRAORF_0018
PTOR263820
PTHE370438 PTH_2753
PPEN278197
PMOB403833
PISL384616
PHOR70601
PGIN242619 PG_0071
PFUR186497
PAST100379
PARS340102
PAER178306
PACN267747 PPA1333
PABY272844
OTSU357244 OTBS_0586
OIHE221109
NSEN222891 NSE_0232
NPHA348780
NFAR247156
MVAN350058 MVAN_1762
MTUB419947 MRA_3281
MTUB336982 TBFG_13269
MTHE349307
MTHE264732 MOTH_0229
MTHE187420
MTBRV RV3240C
MTBCDC MT3338
MSYN262723
MSTA339860 MSP_0006
MSP189918 MKMS_1371
MSP164757 MJLS_1387
MSP164756 MMCS_1353
MSME246196 MSMEG_1881
MSED399549
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR368407
MMAR267377
MLEP272631 ML0779
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGIL350054 MFLV_4705
MGEN243273
MFLO265311
MCAP340047
MBUR259564
MBOV410289 BCG_3269C
MBOV233413 MB3268C
MBAR269797
MAVI243243 MAV_1301
MART243272
MAEO419665
MACE188937 MA1602
MABS561007 MAB_3580C
LXYL281090 LXX05400
LWEL386043
LSPH444177 BSPH_4075
LSAK314315 LSA0495
LREU557436 LREU_0365
LPLA220668
LMON265669
LMON169963
LMES203120 LEUM_0183
LLAC272623 L0334
LLAC272622 LACR_0101
LJOH257314 LJ_0846
LINN272626
LHEL405566 LHV_0720
LGAS324831 LGAS_1331
LDEL390333 LDB0607
LDEL321956 LBUL_0542
LCAS321967 LSEI_0929
LBRE387344
KRAD266940 KRAD_3807
IHOS453591
HWAL362976
HSP64091
HSAL478009
HPYL85963 JHP0373
HPYL357544 HPAG1_0395
HPY HP1052
HMUK485914
HMOD498761 HM1_1266
HMAR272569
HBUT415426
HAUR316274 HAUR_3205
HACI382638 HAC_1163
GTHE420246 GTNG_0329
GKAU235909 GK3170
GFOR411154 GFO_1775
FSUC59374 FSU1369
FSP1855 FRANEAN1_0863
FSP106370
FNOD381764 FNOD_1313
FMAG334413 FMG_1531
FJOH376686 FJOH_2903
FALN326424
ERUM302409 ERGA_CDS_09200
ERUM254945 ERWE_CDS_09290
ELIT314225 ELI_05095
ECHA205920 ECH_1149
ECAN269484 ECAJ_0921
DSP255470 CBDBA388
DSP216389 DEHABAV1_0411
DGEO319795 DGEO_1058
DETH243164 DET_0434
CTRA471473 CTLON_0790
CTRA471472 CTL0795
CTET212717 CTC_01909
CSUL444179
CPNE182082 CPB0678
CPNE138677 CPJ0652
CPNE115713 CPN0652
CPNE115711 CP_0095
CPER195102 CPE2171
CPEL335992 SAR11_0018
CNOV386415 NT01CX_2016
CMUR243161 TC_0820
CMET456442
CMAQ397948
CKOR374847
CKLU431943
CJEJ407148 C8J_0125
CJEJ360109 JJD26997_0145
CJEJ354242 CJJ81176_0167
CJEJ195099 CJE_0127
CJEJ192222 CJ0132
CJEI306537 JK1630
CHOM360107 CHAB381_1683
CGLU196627 CG1303
CFET360106 CFF8240_1497
CEFF196164 CE0774
CDIF272563 CD0143
CDES477974
CCUR360105 CCV52592_1101
CCON360104 CCC13826_1297
CCAV227941 CCA_00088
CBOT536232 CLM_0761
CBOT515621 CLJ_B0723
CBOT508765 CLL_A2065
CBOT498213 CLD_0106
CBOT441772
CBOT441771 CLC_0706
CBOT441770 CLB_0691
CBOT36826 CBO0653
CBEI290402 CBEI_2775
CACE272562 CAC2828
BXEN266265
BWEI315730
BTUR314724 BT0154
BTHU412694
BTHU281309
BTHE226186 BT_4206
BSUB
BPUM315750 BPUM_3178
BLON206672 BL1419
BLIC279010 BL03381
BHER314723 BH0154
BHAL272558
BGAR290434 BG0152
BCLA66692
BCIC186490 BCI_0515
BCER572264
BCER405917 BCE_5295
BCER315749 BCER98_3726
BCER288681
BCER226900 BC_5189
BBUR224326 BB_0154
BAPH372461 BCC_130
BANT592021
BANT568206
BANT261594
BANT260799
BAMY326423 RBAM_036380
BAFZ390236 BAPKO_0155
AYEL322098
AURANTIMONAS
ASP1667 ARTH_2706
APHA212042 APH_1178
APER272557
AORE350688
ANAE240017 ANA_1511
AMET293826 AMET_2933
AMAR234826 AM1120
ALAI441768 ACL_1086
AFUL224325
ACEL351607 ACEL_1759
ABUT367737 ABU_2039
AAUR290340 AAUR_2691


Organism features enriched in list (features available for 268 out of the 286 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 2.491e-96892
Arrangment:Clusters 0.00002931617
Disease:Food_poisoning 0.000851599
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 0.00017301111
Disease:Wide_range_of_infections 0.00017301111
Endospores:No 6.264e-22152211
Endospores:Yes 3.558e-84353
GC_Content_Range4:0-40 4.937e-17146213
GC_Content_Range4:40-60 6.747e-775224
GC_Content_Range4:60-100 0.000025846145
GC_Content_Range7:0-30 3.041e-73847
GC_Content_Range7:30-40 2.834e-9108166
GC_Content_Range7:50-60 7.122e-1120107
GC_Content_Range7:60-70 3.003e-639134
Genome_Size_Range5:0-2 2.554e-12108155
Genome_Size_Range5:2-4 0.0093450102197
Genome_Size_Range5:4-6 1.516e-1246184
Genome_Size_Range5:6-10 0.00150381247
Genome_Size_Range9:0-1 0.00010272227
Genome_Size_Range9:1-2 2.681e-886128
Genome_Size_Range9:2-3 0.000020675120
Genome_Size_Range9:4-5 2.391e-62496
Genome_Size_Range9:5-6 6.996e-62288
Genome_Size_Range9:6-8 0.0006893838
Gram_Stain:Gram_Neg 2.227e-4571333
Gram_Stain:Gram_Pos 7.918e-38134150
Habitat:Specialized 0.00014583753
Motility:No 7.954e-12105151
Motility:Yes 0.0002935103267
Optimal_temp.:- 0.000068496257
Optimal_temp.:25-30 0.0001103119
Optimal_temp.:30-37 0.00001381718
Optimal_temp.:37 0.007513059106
Oxygen_Req:Aerobic 0.000058064185
Oxygen_Req:Anaerobic 7.387e-871102
Pathogenic_in:Animal 0.00116701966
Salinity:Non-halophilic 0.001472762106
Shape:Coccus 3.305e-96282
Shape:Irregular_coccus 1.378e-61717
Shape:Rod 8.784e-14116347
Shape:Sphere 0.00051291619
Temp._range:Hyperthermophilic 4.173e-62123
Temp._range:Mesophilic 0.0014777204473
Temp._range:Thermophilic 0.00008802735



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
NAGLIPASYN-PWY (lipid IVA biosynthesis)3482560.7302
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3002360.7253
GLYCOCAT-PWY (glycogen degradation I)2462100.7178
PWY-1269 (CMP-KDO biosynthesis I)3252430.7034
PWY-4041 (γ-glutamyl cycle)2792210.6878
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951760.6667
PWY-5918 (heme biosynthesis I)2722130.6562
GLUTATHIONESYN-PWY (glutathione biosynthesis)3392410.6544
PWY-5913 (TCA cycle variation IV)3012250.6509
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2912190.6399
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181840.6376
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2862160.6346
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251870.6337
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2962200.6323
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)1491430.6189
TYRFUMCAT-PWY (tyrosine degradation I)1841630.6176
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2902130.6036
PWY-5857 (ubiquinone-10 biosynthesis (prokaryotic))1831570.5786
PWY0-845 (superpathway of pyridoxal 5'-phosphate biosynthesis and salvage)3292250.5756
PWY-5855 (ubiquinone-7 biosynthesis (prokaryotic))1911580.5552
PWY-5028 (histidine degradation II)1301230.5527
PWY-5856 (ubiquinone-9 biosynthesis (prokaryotic))2551890.5497
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491860.5484
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491860.5484
UBISYN-PWY (ubiquinol-8 biosynthesis (prokaryotic))3982450.5393
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)1761470.5341
PYRIDOXSYN-PWY (pyridoxal 5'-phosphate biosynthesis I)4222520.5334
GDPRHAMSYN-PWY (GDP-D-rhamnose biosynthesis)1561340.5198
GLUCONSUPER-PWY (D-gluconate degradation)2291700.5053
PWY-5386 (methylglyoxal degradation I)3052040.5030
ECASYN-PWY (enterobacterial common antigen biosynthesis)1911490.4916
PWY-5148 (acyl-CoA hydrolysis)2271670.4915
PWY0-501 (lipoate biosynthesis and incorporation I)3852330.4889
AST-PWY (arginine degradation II (AST pathway))1201090.4882
P344-PWY (acrylonitrile degradation)2101580.4871
REDCITCYC (TCA cycle variation II)1741390.4839
PWY-5340 (sulfate activation for sulfonation)3852320.4822
SULFATE-CYS-PWY (superpathway of sulfate assimilation and cysteine biosynthesis)3652240.4778
PLPSAL-PWY (pyridoxal 5'-phosphate salvage pathway)3742270.4755
GLUT-REDOX-PWY (glutathione redox reactions II)2461730.4713
PWY0-1329 (succinate to cytochrome bo oxidase electron transfer)96920.4699
PWY0-862 (cis-dodecenoyl biosynthesis)3432140.4675
CHOLINE-BETAINE-ANA-PWY (choline degradation I)1351150.4654
SO4ASSIM-PWY (sulfate reduction I (assimilatory))3112000.4606
PWY-5188 (tetrapyrrole biosynthesis I)4392470.4604
BETSYN-PWY (glycine betaine biosynthesis I (Gram-negative bacteria))1381160.4598
KDOSYN-PWY (KDO transfer to lipid IVA I)1801380.4539
PWY0-1335 (NADH to cytochrome bo oxidase electron transfer)1121000.4532
PWY-46 (putrescine biosynthesis III)1381150.4520
KDO-NAGLIPASYN-PWY (superpathway of KDO2-lipid A biosynthesis)1791370.4504
PHENYLALANINE-DEG1-PWY (phenylalanine degradation I (aerobic))2891890.4497
PWY0-541 (cyclopropane fatty acid (CFA) biosynthesis)3001930.4451
PWY-5938 ((R)-acetoin biosynthesis I)3762230.4440
DAPLYSINESYN-PWY (lysine biosynthesis I)3422100.4439
PWY-6087 (4-chlorocatechol degradation)2231580.4436
PROSYN-PWY (proline biosynthesis I)4752550.4402
P601-PWY (D-camphor degradation)95880.4394
PWY-3162 (tryptophan degradation V (side chain pathway))94870.4360
GALACTCAT-PWY (D-galactonate degradation)104930.4346
PWY-5669 (phosphatidylethanolamine biosynthesis I)4162350.4291
PWY-6389 ((S)-acetoin biosynthesis)3682170.4240
PWY-6193 (3-chlorocatechol degradation II (ortho))1941400.4174
PWY-5084 (2-ketoglutarate dehydrogenase complex)3261990.4139
GALACTITOLCAT-PWY (galactitol degradation)73710.4116
PWY-5755 (4-hydroxybenzoate biosynthesis II (bacteria and fungi))81760.4099
P184-PWY (protocatechuate degradation I (meta-cleavage pathway))94840.4087
LIPASYN-PWY (phospholipases)2121470.4046
GALACTARDEG-PWY (D-galactarate degradation I)1511160.4045
PWY-5783 (octaprenyl diphosphate biosynthesis)1651230.4016



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG10936   EG10626   EG10265   
EG110870.9987970.9986350.998742
EG109360.9998190.999525
EG106260.999278
EG10265



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PAIRWISE BLAST SCORES:

  EG11087   EG10936   EG10626   EG10265   
EG110870.0f0---
EG10936-0.0f0--
EG10626--0.0f0-
EG10265---0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10265 EG10626 EG10936 EG11087 (centered at EG10936)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  EG11087   EG10936   EG10626   EG10265   
48/623415/623322/623342/623
AAEO224324:0:Tyes-71-0
AAUR290340:2:Tyes-0--
AAVE397945:0:Tyes-281228090
ABAC204669:0:Tyes-279125890
ABAU360910:0:Tyes-01724
ABOR393595:0:Tyes-350
ABUT367737:0:Tyes---0
ACAU438753:0:Tyes-302704312
ACEL351607:0:Tyes-0--
ACRY349163:8:Tyes-16979940
ADEH290397:0:Tyes-01052220
AEHR187272:0:Tyes-20102
AFER243159:0:Tyes-204
AHYD196024:0:Tyes-204
ALAI441768:0:Tyes--0-
AMAR234826:0:Tyes-0--
AMAR329726:9:Tyes-49432990
AMET293826:0:Tyes--0-
ANAE240017:0:Tyes-0--
APHA212042:0:Tyes-0--
APLE416269:0:Tyes-2212230
APLE434271:0:Tno-2232250
ASAL382245:5:Tyes-240
ASP1667:3:Tyes-0--
ASP232721:2:Tyes-032776
ASP62928:0:Tyes-1670164
ASP62977:0:Tyes-014992660
ASP76114:2:Tyes-015593
AVAR240292:3:Tyes-204018050
BABO262698:1:Tno-4934870
BAFZ390236:2:Fyes-0--
BAMB339670:3:Tno-250
BAMB398577:3:Tno-250
BAMY326423:0:Tyes--0-
BAPH198804:0:Tyes-01-
BAPH372461:0:Tyes-0--
BBAC264462:0:Tyes-04072040
BBAC360095:0:Tyes-03542
BBRO257310:0:Tyes-02463
BBUR224326:21:Fno-0--
BCAN483179:1:Tno-5125060
BCEN331271:2:Tno-250
BCEN331272:3:Tyes-360
BCER226900:1:Tyes-0--
BCER315749:1:Tyes-0--
BCER405917:1:Tyes-0--
BCIC186490:0:Tyes-0--
BFRA272559:1:Tyes-15220400
BFRA295405:0:Tno-16321990
BGAR290434:2:Fyes-0--
BHEN283166:0:Tyes-03862
BHER314723:0:Fyes-0--
BJAP224911:0:Fyes-036438
BLIC279010:0:Tyes-0--
BLON206672:0:Tyes-0--
BMAL243160:1:Tno-306
BMAL320388:1:Tno-305
BMAL320389:1:Tyes-250
BMEL224914:1:Tno-05484
BMEL359391:1:Tno-4684620
BOVI236:1:Tyes-4374330
BPAR257311:0:Tno-02153
BPER257313:0:Tyes-07363
BPET94624:0:Tyes-1740171
BPSE272560:1:Tyes-305
BPSE320372:1:Tno-306
BPSE320373:1:Tno-305
BPUM315750:0:Tyes-0--
BQUI283165:0:Tyes-03619
BSP107806:2:Tyes-01-
BSP36773:2:Tyes-250
BSP376:0:Tyes-504816
BSUI204722:1:Tyes-4974910
BSUI470137:1:Tno-3002940
BTHA271848:1:Tno-250
BTHE226186:0:Tyes---0
BTRI382640:1:Tyes-031226
BTUR314724:0:Fyes-0--
BVIE269482:7:Tyes-250
CABO218497:0:Tyes-794-0
CACE272562:1:Tyes--0-
CAULO:0:Tyes-227301173
CBEI290402:0:Tyes--0-
CBLO203907:0:Tyes-1-0
CBLO291272:0:Tno-1-0
CBOT36826:1:Tno--0-
CBOT441770:0:Tyes--0-
CBOT441771:0:Tno--0-
CBOT498213:1:Tno--0-
CBOT508765:1:Tyes--0-
CBOT515621:2:Tyes--0-
CBOT536232:0:Tno--0-
CBUR227377:1:Tyes-560
CBUR360115:1:Tno-890
CBUR434922:2:Tno-108
CCAV227941:1:Tyes---0
CCHL340177:0:Tyes-858-0
CCON360104:2:Tyes---0
CCUR360105:0:Tyes---0
CDIF272563:1:Tyes-0--
CDIP257309:0:Tyes-0313-
CEFF196164:0:Fyes-0--
CFEL264202:1:Tyes-0-858
CFET360106:0:Tyes---0
CGLU196627:0:Tyes--0-
CHOM360107:1:Tyes---0
CHUT269798:0:Tyes--20270
CHYD246194:0:Tyes-01143-
CJAP155077:0:Tyes-204
CJEI306537:0:Tyes-0--
CJEJ192222:0:Tyes---0
CJEJ195099:0:Tno---0
CJEJ354242:2:Tyes---0
CJEJ360109:0:Tyes---0
CJEJ407148:0:Tno---0
CMIC31964:2:Tyes-0592-
CMIC443906:2:Tyes-0906-
CMUR243161:1:Tyes---0
CNOV386415:0:Tyes--0-
CPEL335992:0:Tyes---0
CPER195102:1:Tyes-0--
CPER195103:0:Tno-13740-
CPER289380:3:Tyes-12230-
CPHY357809:0:Tyes-01350-
CPNE115711:1:Tyes---0
CPNE115713:0:Tno---0
CPNE138677:0:Tno---0
CPNE182082:0:Tno---0
CPRO264201:0:Fyes-0-262
CPSY167879:0:Tyes-104
CRUT413404:0:Tyes-0945405
CSAL290398:0:Tyes-205
CSP501479:7:Fyes-30-
CSP501479:8:Fyes---0
CSP78:2:Tyes-0152199
CTEP194439:0:Tyes-5420962
CTET212717:0:Tyes--0-
CTRA471472:0:Tyes---0
CTRA471473:0:Tno---0
CVES412965:0:Tyes-0-376
CVIO243365:0:Tyes-6960752
DARO159087:0:Tyes-02194
DDES207559:0:Tyes-84202773
DETH243164:0:Tyes-0--
DGEO319795:1:Tyes-0--
DHAF138119:0:Tyes-37040-
DNOD246195:0:Tyes-103
DOLE96561:0:Tyes-0-258
DPSY177439:2:Tyes-8285850
DRAD243230:3:Tyes-3090-
DRED349161:0:Tyes-6460-
DSHI398580:5:Tyes-115611530
DSP216389:0:Tyes-0--
DSP255470:0:Tno-0--
DVUL882:1:Tyes-022152082
ECAN269484:0:Tyes-0--
ECAR218491:0:Tyes2104
ECHA205920:0:Tyes-0--
ECOL199310:0:Tno1230
ECOL316407:0:Tno1230
ECOL331111:6:Tno1230
ECOL362663:0:Tno1230
ECOL364106:1:Tno1230
ECOL405955:2:Tyes1230
ECOL409438:6:Tyes1230
ECOL413997:0:Tno1230
ECOL439855:4:Tno1230
ECOL469008:0:Tno2103
ECOL481805:0:Tno2103
ECOL585034:0:Tno1230
ECOL585035:0:Tno1230
ECOL585055:0:Tno1230
ECOL585056:2:Tno1230
ECOL585057:0:Tno1230
ECOL585397:0:Tno1230
ECOL83334:0:Tno1230
ECOLI:0:Tno1230
ECOO157:0:Tno1230
EFAE226185:3:Tyes-01357-
EFER585054:1:Tyes1230
ELIT314225:0:Tyes-0--
ERUM254945:0:Tyes-0--
ERUM302409:0:Tno-0--
ESP42895:1:Tyes1230
FJOH376686:0:Tyes---0
FMAG334413:1:Tyes-0--
FNOD381764:0:Tyes-0--
FNUC190304:0:Tyes-0-1004
FPHI484022:1:Tyes-01657522
FRANT:0:Tno-5417430
FSP1855:0:Tyes--0-
FSUC59374:0:Tyes--0-
FTUL351581:0:Tno-0-403
FTUL393011:0:Tno-0-346
FTUL393115:0:Tyes-5347340
FTUL401614:0:Tyes-5026930
FTUL418136:0:Tno-0-358
FTUL458234:0:Tno-0-356
GBET391165:0:Tyes-2002030
GFOR411154:0:Tyes---0
GKAU235909:1:Tyes-0--
GMET269799:1:Tyes-02141659
GOXY290633:5:Tyes-149916150
GSUL243231:0:Tyes-13121390
GTHE420246:1:Tyes--0-
GURA351605:0:Tyes-397-0
GVIO251221:0:Tyes-98001009
HACI382638:1:Tyes---0
HARS204773:0:Tyes-306
HAUR316274:2:Tyes-0--
HCHE349521:0:Tyes-205
HDUC233412:0:Tyes-8388370
HHAL349124:0:Tyes-2060
HHEP235279:0:Tyes-0-726
HINF281310:0:Tyes-01199
HINF374930:0:Tyes-203-0
HINF71421:0:Tno-01227
HMOD498761:0:Tyes-0--
HNEP81032:0:Tyes-274027370
HPY:0:Tno---0
HPYL357544:1:Tyes---0
HPYL85963:0:Tno---0
HSOM205914:1:Tyes-6276280
HSOM228400:0:Tno-8388390
ILOI283942:0:Tyes-340
JSP290400:1:Tyes-032486
JSP375286:0:Tyes-306
KPNE272620:2:Tyes1230
KRAD266940:2:Fyes-0--
LACI272621:0:Tyes-2400-
LBIF355278:2:Tyes-930-0
LBIF456481:2:Tno-970-0
LBOR355276:1:Tyes-218-0
LBOR355277:1:Tno-222-0
LCAS321967:1:Tyes-0--
LCHO395495:0:Tyes-218160
LDEL321956:0:Tyes-0--
LDEL390333:0:Tyes-0--
LGAS324831:0:Tyes-0--
LHEL405566:0:Tyes-0--
LINT189518:1:Tyes-0-350
LINT267671:1:Tno-302-0
LINT363253:3:Tyes-51048
LJOH257314:0:Tyes-0--
LLAC272622:5:Tyes-0--
LLAC272623:0:Tyes-0--
LMES203120:1:Tyes-0--
LPNE272624:0:Tno-0-1142
LPNE297245:1:Fno-10970
LPNE297246:1:Fyes-011245
LPNE400673:0:Tno-3403410
LREU557436:0:Tyes-0--
LSAK314315:0:Tyes-0--
LSPH444177:1:Tyes--0-
LXYL281090:0:Tyes-0--
MABS561007:1:Tyes-0--
MACE188937:0:Tyes--0-
MAER449447:0:Tyes-311803854
MAQU351348:2:Tyes-205
MAVI243243:0:Tyes--0-
MBOV233413:0:Tno-0--
MBOV410289:0:Tno-0--
MCAP243233:0:Tyes-20715
MEXT419610:0:Tyes-118102652
MFLA265072:0:Tyes-4032
MGIL350054:3:Tyes-0--
MLEP272631:0:Tyes-0--
MLOT266835:2:Tyes-147314660
MMAG342108:0:Tyes-339103346
MMAR394221:0:Tyes-1991970
MPET420662:1:Tyes-2270350
MSME246196:0:Tyes-0--
MSP164756:1:Tno-0--
MSP164757:0:Tno-0--
MSP189918:2:Tyes-0--
MSP266779:3:Tyes-100710030
MSP400668:0:Tyes-203
MSP409:2:Tyes-029064740
MSTA339860:0:Tyes--0-
MSUC221988:0:Tyes-011382
MTBCDC:0:Tno-0--
MTBRV:0:Tno-0--
MTHE264732:0:Tyes-0--
MTUB336982:0:Tno-0--
MTUB419947:0:Tyes-0--
MVAN350058:0:Tyes-0--
MXAN246197:0:Tyes-9760607
NARO279238:0:Tyes-910-
NEUR228410:0:Tyes-01430-
NEUT335283:2:Tyes-4440-
NGON242231:0:Tyes-0304988
NHAM323097:2:Tyes-30751
NMEN122586:0:Tno-14574150
NMEN122587:0:Tyes-137816780
NMEN272831:0:Tno-129114890
NMEN374833:0:Tno-140216440
NMUL323848:3:Tyes-14640-
NOCE323261:1:Tyes-250302506
NSEN222891:0:Tyes-0--
NSP103690:6:Tyes-260715550
NSP35761:1:Tyes-01778-
NSP387092:0:Tyes-424-0
NWIN323098:0:Tyes-30679
OANT439375:5:Tyes-04756
OCAR504832:0:Tyes-041171
OTSU357244:0:Fyes-0--
PACN267747:0:Tyes-0--
PAER208963:0:Tyes-306
PAER208964:0:Tno-306
PARC259536:0:Tyes-012611505
PATL342610:0:Tyes-103
PCAR338963:0:Tyes-04120
PCRY335284:1:Tyes-014051745
PDIS435591:0:Tyes-0-1607
PENT384676:0:Tyes-305
PFLU205922:0:Tyes-30243
PFLU216595:1:Tyes-382338210
PFLU220664:0:Tyes-20273
PGIN242619:0:Tyes---0
PHAL326442:1:Tyes-2452460
PING357804:0:Tyes-230
PINT246198:0:Tyes-0--
PINT246198:1:Tyes---0
PLUM243265:0:Fyes2104
PLUT319225:0:Tyes-0-544
PMAR146891:0:Tyes-312-0
PMAR167539:0:Tyes-3913790
PMAR167540:0:Tyes-309-0
PMAR167542:0:Tyes-338-0
PMAR167546:0:Tyes-311-0
PMAR167555:0:Tyes-3393240
PMAR59920:0:Tno-3193040
PMAR74546:0:Tyes-306-0
PMAR74547:0:Tyes-0521351
PMAR93060:0:Tyes-355-0
PMEN399739:0:Tyes-360
PMUL272843:1:Tyes-107110700
PNAP365044:8:Tyes-032693
PPRO298386:2:Tyes-103
PPUT160488:0:Tno-250
PPUT351746:0:Tyes-305
PPUT76869:0:Tno-305
PRUM264731:0:Tyes-198043
PSP117:0:Tyes-3760-0
PSP296591:2:Tyes-03252
PSP312153:0:Tyes-270
PSP56811:2:Tyes-150214070
PSTU379731:0:Tyes-206120580
PSYR205918:0:Tyes-305
PSYR223283:2:Tyes-305
PTHE370438:0:Tyes-0--
RAKA293614:0:Fyes-499-0
RALB246199:0:Tyes--0-
RBEL336407:0:Tyes-0-60
RBEL391896:0:Fno-0-282
RCAN293613:0:Fyes-109-0
RCAS383372:0:Tyes-0--
RCON272944:0:Tno-553-0
RDEN375451:4:Tyes-032776
RETL347834:5:Tyes-9229180
REUT264198:3:Tyes-305
REUT381666:2:Tyes-305
RFEL315456:2:Tyes-0-90
RFER338969:1:Tyes-163802141
RLEG216596:6:Tyes-101210080
RMAS416276:1:Tyes-403-0
RMET266264:2:Tyes-306
RPAL258594:0:Tyes-0853030
RPAL316055:0:Tyes-031954
RPAL316056:0:Tyes-302773
RPAL316057:0:Tyes-19003313
RPAL316058:0:Tyes-50801994
RPOM246200:1:Tyes-031121
RPRO272947:0:Tyes-319-0
RRIC392021:0:Fno-533-0
RRIC452659:0:Tyes-557-0
RRUB269796:1:Tyes-0158704
RSOL267608:1:Tyes-306
RSP101510:3:Fyes-0--
RSP357808:0:Tyes-0--
RSPH272943:4:Tyes-211521120
RSPH349101:2:Tno-205920560
RSPH349102:5:Tyes-204120380
RTYP257363:0:Tno-317-0
SACI56780:0:Tyes-0-609
SALA317655:1:Tyes-250-
SARE391037:0:Tyes-0--
SAUR158878:1:Tno--0-
SAUR158879:1:Tno--0-
SAUR196620:0:Tno--0-
SAUR282459:0:Tno--0-
SAUR359786:1:Tno--0-
SAUR359787:1:Tno--0-
SAUR418127:0:Tyes--0-
SAVE227882:1:Fyes-19240-
SBAL399599:3:Tyes-337380
SBAL402882:1:Tno-336040
SBOY300268:1:Tyes1230
SCO:2:Fyes--0-
SDEG203122:0:Tyes-240
SDEN318161:0:Tyes-331060
SDYS300267:1:Tyes1230
SELO269084:0:Tyes-6272490
SENT209261:0:Tno1230
SENT220341:0:Tno1230
SENT295319:0:Tno1230
SENT321314:2:Tno1230
SENT454169:2:Tno1230
SFLE198214:0:Tyes1230
SFLE373384:0:Tno1230
SFUM335543:0:Tyes-01516721
SGLO343509:3:Tyes2340
SHAL458817:0:Tyes-390
SHIGELLA:0:Tno1230
SLAC55218:1:Fyes-042221
SLOI323850:0:Tyes-11014
SMED366394:3:Tyes-4424380
SMEL266834:2:Tyes-4674630
SONE211586:1:Tyes-374503748
SPEA398579:0:Tno-352203525
SPRO399741:1:Tyes2340
SRUB309807:1:Tyes--0-
SSED425104:0:Tyes-3170
SSON300269:1:Tyes1230
SSP1131:0:Tyes-0152035
SSP1148:0:Tyes--0354
SSP292414:2:Tyes-226622630
SSP321327:0:Tyes--01088
SSP321332:0:Tyes-165801986
SSP387093:0:Tyes---0
SSP644076:5:Fyes---0
SSP644076:6:Fyes-30-
SSP64471:0:Tyes-0162088
SSP84588:0:Tyes-029479
SSP94122:1:Tyes-340103404
STHE292459:0:Tyes-02098-
STRO369723:0:Tyes-02785-
STYP99287:1:Tyes1230
TCRU317025:0:Tyes-140
TDEN243275:0:Tyes-15880-
TDEN292415:0:Tyes-1060101
TDEN326298:0:Tyes---0
TELO197221:0:Tyes--0724
TERY203124:0:Tyes-11866470
TFUS269800:0:Tyes-340-
TLET416591:0:Tyes-0--
TMAR243274:0:Tyes-0--
TPAL243276:0:Tyes-0--
TPET390874:0:Tno-0--
TSP28240:0:Tyes-0--
TTHE262724:1:Tyes-0--
TTHE300852:2:Tyes-0--
TTUR377629:0:Tyes-204
VCHO:0:Tyes-204
VCHO345073:1:Tno-103
VEIS391735:1:Tyes-238423810
VFIS312309:2:Tyes-103
VPAR223926:1:Tyes-230
VVUL196600:2:Tyes-230
VVUL216895:1:Tno-103
WPIP80849:0:Tyes-0--
WPIP955:0:Tyes-0--
WSUC273121:0:Tyes---0
XAUT78245:1:Tyes--22650
XAXO190486:0:Tyes-340
XCAM190485:0:Tyes-350
XCAM314565:0:Tno-205
XCAM316273:0:Tno-470
XCAM487884:0:Tno-306
XFAS160492:2:Tno-33230
XFAS183190:1:Tyes-141901422
XFAS405440:0:Tno-145201455
XORY291331:0:Tno-205
XORY342109:0:Tyes-205
XORY360094:0:Tno-590
YENT393305:1:Tyes2340
YPES187410:5:Tno2104
YPES214092:3:Tno2340
YPES349746:2:Tno2104
YPES360102:3:Tyes2104
YPES377628:2:Tno2340
YPES386656:2:Tno2104
YPSE273123:2:Tno2340
YPSE349747:2:Tno2104
ZMOB264203:0:Tyes-0--



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