CANDIDATE ID: 1080

CANDIDATE ID: 1080

NUMBER OF GENES: 4
AVERAGE SCORE:    9.9934883e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- EG12666 (lpxH) (b0524)
   Products of gene:
     - EG12666-MONOMER (UDP-2,3-diacylglucosamine hydrolase)
       Reactions:
        UDP-2,3-bis[O-(3R)-3-hydroxymyristoyl]-alpha-D-glucosamine + H2O  ->  2,3-bis[(3R)-3-hydroxymyristoyl]-beta-D-glucosaminyl 1-phosphate + uridine-5'-phosphate + 2 H+
         In pathways
         LPSSYN-PWY (superpathway of lipopolysaccharide biosynthesis)
         KDO-NAGLIPASYN-PWY (superpathway of KDO2-lipid A biosynthesis)
         NAGLIPASYN-PWY (lipid IVA biosynthesis)

- EG10758 (ppiB) (b0525)
   Products of gene:
     - EG10758-MONOMER (peptidyl-prolyl cis-trans isomerase B (rotamase B))
       Reactions:
        peptidylproline (omega = 180)  =  peptidylproline (omega = 0)

- EG10390 (glnS) (b0680)
   Products of gene:
     - GLNS-MONOMER (glutaminyl-tRNA synthetase)
       Reactions:
        tRNAgln + L-glutamine + ATP  ->  L-glutaminyl-tRNAgln + diphosphate + AMP
         In pathways
         TRNA-CHARGING-PWY (tRNA charging pathway)

- EG10196 (cysS) (b0526)
   Products of gene:
     - CYSS-MONOMER (cysteinyl-tRNA synthetase)
       Reactions:
        tRNAcys + L-cysteine + ATP  ->  L-cysteinyl-tRNAcys + diphosphate + AMP
         In pathways
         TRNA-CHARGING-PWY (tRNA charging pathway)



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ORGANISMS CONTAINING AT LEAST 3 GENES FROM THE GROUP:

Total number of orgs: 215
Effective number of orgs (counting one per cluster within 468 clusters): 145

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317584
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329534
YPES386656 ncbi Yersinia pestis Pestoides F4
YPES377628 ncbi Yersinia pestis Nepal5164
YPES360102 ncbi Yersinia pestis Antiqua4
YPES349746 ncbi Yersinia pestis Angola4
YPES214092 ncbi Yersinia pestis CO924
YPES187410 ncbi Yersinia pestis KIM 104
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80814
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A3
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110183
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103313
XFAS405440 ncbi Xylella fastidiosa M123
XFAS183190 ncbi Xylella fastidiosa Temecula13
XFAS160492 ncbi Xylella fastidiosa 9a5c3
XCAM487884 Xanthomonas campestris pv. paulliniae3
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-103
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80043
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339133
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3063
VVUL216895 ncbi Vibrio vulnificus CMCP64
VVUL196600 ncbi Vibrio vulnificus YJ0164
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106334
VFIS312309 ncbi Vibrio fischeri ES1144
VEIS391735 ncbi Verminephrobacter eiseniae EF01-24
VCHO345073 ncbi Vibrio cholerae O3954
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169614
TTUR377629 ncbi Teredinibacter turnerae T79014
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252594
TCRU317025 ncbi Thiomicrospira crunogena XCL-24
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT24
SSP94122 ncbi Shewanella sp. ANA-34
SSON300269 ncbi Shigella sonnei Ss0464
SSED425104 ncbi Shewanella sediminis HAW-EB34
SPRO399741 ncbi Serratia proteamaculans 5684
SPEA398579 ncbi Shewanella pealeana ATCC 7003454
SONE211586 ncbi Shewanella oneidensis MR-14
SLOI323850 ncbi Shewanella loihica PV-44
SHIGELLA ncbi Shigella flexneri 2a str. 2457T4
SHAL458817 ncbi Shewanella halifaxensis HAW-EB44
SGLO343509 ncbi Sodalis glossinidius morsitans4
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB3
SFLE373384 ncbi Shigella flexneri 5 str. 84014
SFLE198214 ncbi Shigella flexneri 2a str. 3014
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4764
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B674
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91504
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT184
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty24
SDYS300267 ncbi Shigella dysenteriae Sd1974
SDEN318161 ncbi Shewanella denitrificans OS2174
SDEG203122 ncbi Saccharophagus degradans 2-404
SBOY300268 ncbi Shigella boydii Sb2274
SBAL402882 ncbi Shewanella baltica OS1854
SBAL399599 ncbi Shewanella baltica OS1954
SACI56780 ncbi Syntrophus aciditrophicus SB4
RSOL267608 ncbi Ralstonia solanacearum GMI10004
RMET266264 ncbi Ralstonia metallidurans CH344
RFER338969 ncbi Rhodoferax ferrireducens T1184
REUT381666 ncbi Ralstonia eutropha H164
REUT264198 ncbi Ralstonia eutropha JMP1344
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30004
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a4
PSTU379731 ncbi Pseudomonas stutzeri A15014
PSP56811 Psychrobacter sp.4
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-14
PSP296591 ncbi Polaromonas sp. JS6664
PSP117 Pirellula sp.3
PPUT76869 ncbi Pseudomonas putida GB-14
PPUT351746 ncbi Pseudomonas putida F14
PPUT160488 ncbi Pseudomonas putida KT24404
PPRO298386 ncbi Photobacterium profundum SS94
PNAP365044 ncbi Polaromonas naphthalenivorans CJ24
PMUL272843 ncbi Pasteurella multocida multocida Pm704
PMEN399739 ncbi Pseudomonas mendocina ymp4
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO14
PING357804 ncbi Psychromonas ingrahamii 374
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1254
PFLU220664 ncbi Pseudomonas fluorescens Pf-54
PFLU216595 ncbi Pseudomonas fluorescens SBW254
PFLU205922 ncbi Pseudomonas fluorescens Pf0-14
PENT384676 ncbi Pseudomonas entomophila L484
PCRY335284 ncbi Psychrobacter cryohalolentis K54
PCAR338963 ncbi Pelobacter carbinolicus DSM 23804
PATL342610 ncbi Pseudoalteromonas atlantica T6c4
PARC259536 ncbi Psychrobacter arcticus 273-44
PAER208964 ncbi Pseudomonas aeruginosa PAO14
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA144
NOCE323261 ncbi Nitrosococcus oceani ATCC 197073
NMUL323848 ncbi Nitrosospira multiformis ATCC 251963
NMEN374833 ncbi Neisseria meningitidis 0534424
NMEN272831 ncbi Neisseria meningitidis FAM184
NMEN122587 ncbi Neisseria meningitidis Z24914
NMEN122586 ncbi Neisseria meningitidis MC584
NGON242231 ncbi Neisseria gonorrhoeae FA 10904
NEUT335283 ncbi Nitrosomonas eutropha C913
NEUR228410 ncbi Nitrosomonas europaea ATCC 197183
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E4
MSP400668 ncbi Marinomonas sp. MWYL14
MPET420662 ncbi Methylibium petroleiphilum PM14
MMAR444158 ncbi Methanococcus maripaludis C63
MMAR426368 ncbi Methanococcus maripaludis C73
MMAR402880 ncbi Methanococcus maripaludis C53
MMAR267377 ncbi Methanococcus maripaludis S23
MFLA265072 ncbi Methylobacillus flagellatus KT4
MCAP243233 ncbi Methylococcus capsulatus Bath3
MAQU351348 ncbi Marinobacter aquaeolei VT84
LPNE400673 ncbi Legionella pneumophila Corby4
LPNE297246 ncbi Legionella pneumophila Paris4
LPNE297245 ncbi Legionella pneumophila Lens4
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 14
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-003
LCHO395495 ncbi Leptothrix cholodnii SP-64
LBRE387344 ncbi Lactobacillus brevis ATCC 3673
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785784
JSP375286 ncbi Janthinobacterium sp. Marseille4
ILOI283942 ncbi Idiomarina loihiensis L2TR4
HSOM228400 ncbi Haemophilus somnus 23364
HSOM205914 ncbi Haemophilus somnus 129PT4
HINF71421 ncbi Haemophilus influenzae Rd KW204
HINF374930 ncbi Haemophilus influenzae PittEE3
HINF281310 ncbi Haemophilus influenzae 86-028NP4
HDUC233412 ncbi Haemophilus ducreyi 35000HP4
HCHE349521 ncbi Hahella chejuensis KCTC 23964
HARS204773 ncbi Herminiimonas arsenicoxydans4
GURA351605 ncbi Geobacter uraniireducens Rf44
GSUL243231 ncbi Geobacter sulfurreducens PCA4
GMET269799 ncbi Geobacter metallireducens GS-154
GBET391165 ncbi Granulibacter bethesdensis CGDNIH13
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-003
FTUL418136 ncbi Francisella tularensis tularensis WY96-34183
FTUL401614 ncbi Francisella novicida U1123
FTUL393115 ncbi Francisella tularensis tularensis FSC1983
FTUL393011 ncbi Francisella tularensis holarctica OSU183
FTUL351581 Francisella tularensis holarctica FSC2003
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S853
FRANT ncbi Francisella tularensis tularensis SCHU S43
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250173
ESP42895 Enterobacter sp.4
EFER585054 ncbi Escherichia fergusonii ATCC 354694
ECOO157 ncbi Escherichia coli O157:H7 EDL9334
ECOL83334 Escherichia coli O157:H74
ECOL585397 ncbi Escherichia coli ED1a4
ECOL585057 ncbi Escherichia coli IAI394
ECOL585056 ncbi Escherichia coli UMN0264
ECOL585055 ncbi Escherichia coli 559894
ECOL585035 ncbi Escherichia coli S884
ECOL585034 ncbi Escherichia coli IAI14
ECOL481805 ncbi Escherichia coli ATCC 87394
ECOL469008 ncbi Escherichia coli BL21(DE3)4
ECOL439855 ncbi Escherichia coli SMS-3-54
ECOL413997 ncbi Escherichia coli B str. REL6064
ECOL409438 ncbi Escherichia coli SE114
ECOL405955 ncbi Escherichia coli APEC O14
ECOL364106 ncbi Escherichia coli UTI894
ECOL362663 ncbi Escherichia coli 5364
ECOL331111 ncbi Escherichia coli E24377A4
ECOL316407 ncbi Escherichia coli K-12 substr. W31104
ECOL199310 ncbi Escherichia coli CFT0734
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10434
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough3
DOLE96561 ncbi Desulfococcus oleovorans Hxd33
DNOD246195 ncbi Dichelobacter nodosus VCS1703A4
DHAF138119 ncbi Desulfitobacterium hafniense Y513
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G203
DARO159087 ncbi Dechloromonas aromatica RCB4
CVIO243365 ncbi Chromobacterium violaceum ATCC 124724
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA4
CSAL290398 ncbi Chromohalobacter salexigens DSM 30434
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)4
CPSY167879 ncbi Colwellia psychrerythraea 34H4
CPHY357809 ncbi Clostridium phytofermentans ISDg3
CPER289380 ncbi Clostridium perfringens SM1013
CPER195103 ncbi Clostridium perfringens ATCC 131243
CPER195102 ncbi Clostridium perfringens 133
CNOV386415 ncbi Clostridium novyi NT3
CKLU431943 ncbi Clostridium kluyveri DSM 5553
CJAP155077 Cellvibrio japonicus4
CDIF272563 ncbi Clostridium difficile 6303
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN3
CBLO203907 ncbi Candidatus Blochmannia floridanus3
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80523
BVIE269482 ncbi Burkholderia vietnamiensis G44
BTHA271848 ncbi Burkholderia thailandensis E2644
BSP36773 Burkholderia sp.4
BPSE320373 ncbi Burkholderia pseudomallei 6684
BPSE320372 ncbi Burkholderia pseudomallei 1710b4
BPSE272560 ncbi Burkholderia pseudomallei K962434
BPET94624 Bordetella petrii3
BPER257313 ncbi Bordetella pertussis Tohama I3
BPAR257311 ncbi Bordetella parapertussis 128223
BMAL320389 ncbi Burkholderia mallei NCTC 102474
BMAL320388 ncbi Burkholderia mallei SAVP14
BMAL243160 ncbi Burkholderia mallei ATCC 233444
BCEN331272 ncbi Burkholderia cenocepacia HI24244
BCEN331271 ncbi Burkholderia cenocepacia AU 10544
BBRO257310 ncbi Bordetella bronchiseptica RB503
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1003
BAMB398577 ncbi Burkholderia ambifaria MC40-64
BAMB339670 ncbi Burkholderia ambifaria AMMD4
ASP76114 ncbi Aromatoleum aromaticum EbN14
ASP62977 ncbi Acinetobacter sp. ADP14
ASP62928 ncbi Azoarcus sp. BH724
ASP232721 ncbi Acidovorax sp. JS424
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4494
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL034
APLE416269 ncbi Actinobacillus pleuropneumoniae L204
AORE350688 ncbi Alkaliphilus oremlandii OhILAs3
AMET293826 ncbi Alkaliphilus metalliredigens QYMF3
AHYD196024 Aeromonas hydrophila dhakensis4
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232703
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-13
ABOR393595 ncbi Alcanivorax borkumensis SK24
ABAU360910 ncbi Bordetella avium 197N3
AAVE397945 ncbi Acidovorax citrulli AAC00-14


Names of the homologs of the genes in the group in each of these orgs
  EG12666   EG10758   EG10390   EG10196   
YPSE349747 YPSIP31758_3016YPSIP31758_3015YPSIP31758_2907YPSIP31758_3014
YPSE273123 YPTB1033YPTB1034YPTB1121YPTB1035
YPES386656 YPDSF_2713YPDSF_2712YPDSF_2624YPDSF_2711
YPES377628 YPN_1015YPN_1016YPN_1116YPN_1017
YPES360102 YPA_2570YPA_2569YPA_2467YPA_2568
YPES349746 YPANGOLA_A1276YPANGOLA_A1277YPANGOLA_A0326YPANGOLA_A1278
YPES214092 YPO3075YPO3074YPO2630YPO3073
YPES187410 Y1105Y1106Y1205Y1107
YENT393305 YE3050YE3049YE2977YE3048
XORY360094 XOOORF_4348XOOORF_1191XOOORF_2035
XORY342109 XOO3469XOO3505XOO2524
XORY291331 XOO3672XOO3713XOO2678
XFAS405440 XFASM12_2158XFASM12_0694XFASM12_0311
XFAS183190 PD_1965PD_0584PD_0287
XFAS160492 XF2588XF1338XF0995
XCAM487884 XCC-B100_3394XCC-B100_3531XCC-B100_1928
XCAM316273 XCAORF_1153XCAORF_1004XCAORF_2520
XCAM314565 XC_3278XC_3409XC_1867
XCAM190485 XCC0957XCC0821XCC2251
XAXO190486 XAC1036XAC0893XAC2354
VVUL216895 VV1_2910VV1_2909VV1_0176VV1_2908
VVUL196600 VV1360VV1361VV1013VV1362
VPAR223926 VP1148VP1149VP0832VP1150
VFIS312309 VF1602VF1601VF0809VF1600
VEIS391735 VEIS_4228VEIS_4229VEIS_4234VEIS_4936
VCHO345073 VC0395_A1441VC0395_A1440VC0395_A0517VC0395_A1439
VCHO VC1850VC1849VC0997VC1848
TTUR377629 TERTU_1905TERTU_1906TERTU_1907TERTU_1908
TDEN292415 TBD_1905TBD_1904TBD_0850TBD_1902
TCRU317025 TCR_0919TCR_0920TCR_0922TCR_0923
STYP99287 STM0535STM0536STM0686STM0537
SSP94122 SHEWANA3_2666SHEWANA3_2665SHEWANA3_2669SHEWANA3_2664
SSON300269 SSO_0494SSO_0493SSO_0634SSO_0492
SSED425104 SSED_1536SSED_1537SSED_1533SSED_1538
SPRO399741 SPRO_1164SPRO_1165SPRO_1229SPRO_1166
SPEA398579 SPEA_2686SPEA_2685SPEA_2689SPEA_2684
SONE211586 SO_1789SO_1790SO_1786SO_1791
SLOI323850 SHEW_2513SHEW_2512SHEW_2516SHEW_2511
SHIGELLA YBBFPPIBGLNSCYSS
SHAL458817 SHAL_2773SHAL_2772SHAL_2775SHAL_2771
SGLO343509 SG0703SG0704SG0860SG0705
SFUM335543 SFUM_3231SFUM_3516SFUM_1634
SFLE373384 SFV_0482SFV_0483SFV_0651SFV_0484
SFLE198214 AAN42109.1AAN42110.1AAN42251.1AAN42111.1
SENT454169 SEHA_C0643SEHA_C0644SEHA_C0805SEHA_C0645
SENT321314 SCH_0574SCH_0575SCH_0707SCH_0576
SENT295319 SPA2188SPA2187SPA2055SPA2186
SENT220341 STY0583STY0584STY0724STY0585
SENT209261 T2326T2325T2189T2324
SDYS300267 SDY_0276SDY_0277SDY_0614SDY_0278
SDEN318161 SDEN_2500SDEN_2499SDEN_2413SDEN_2498
SDEG203122 SDE_1900SDE_1901SDE_1902SDE_1903
SBOY300268 SBO_0419SBO_0418SBO_0542SBO_0417
SBAL402882 SHEW185_1588SHEW185_1589SHEW185_1585SHEW185_1590
SBAL399599 SBAL195_1622SBAL195_1623SBAL195_1619SBAL195_1624
SACI56780 SYN_01366SYN_02039SYN_02116SYN_03026
RSOL267608 RSC1163RSC1164RSC0791RSC1167
RMET266264 RMET_1081RMET_1082RMET_0818RMET_1085
RFER338969 RFER_1344RFER_1345RFER_1823RFER_1349
REUT381666 H16_A1217H16_A1218H16_A2784H16_A1221
REUT264198 REUT_A1118REUT_A1119REUT_A0833REUT_A1122
PSYR223283 PSPTO_3745PSPTO_3744PSPTO_3743PSPTO_3742
PSYR205918 PSYR_1732PSYR_1733PSYR_1734PSYR_1735
PSTU379731 PST_2050PST_2051PST_2052PST_2053
PSP56811 PSYCPRWF_0812PSYCPRWF_0813PSYCPRWF_0814PSYCPRWF_1263
PSP312153 PNUC_0855PNUC_0856PNUC_1722PNUC_0858
PSP296591 BPRO_2869BPRO_2868BPRO_3350BPRO_2865
PSP117 RB10549RB1578RB4675
PPUT76869 PPUTGB1_2881PPUTGB1_2880PPUTGB1_2879PPUTGB1_2878
PPUT351746 PPUT_2789PPUT_2788PPUT_2787PPUT_2786
PPUT160488 PP_2902PP_2903PP_2904PP_2905
PPRO298386 PBPRA1096PBPRA1097PBPRA1034PBPRA1098
PNAP365044 PNAP_2897PNAP_2896PNAP_1351PNAP_2893
PMUL272843 PM0102PM0943PM0528PM0945
PMEN399739 PMEN_2574PMEN_2573PMEN_2572PMEN_2571
PLUM243265 PLU3806PLU3805PLU1319PLU3804
PING357804 PING_2186PING_2185PING_0492PING_2184
PHAL326442 PSHAA2067PSHAA2066PSHAA1642PSHAA2065
PFLU220664 PFL_3915PFL_3914PFL_3913PFL_3912
PFLU216595 PFLU3874PFLU3873PFLU3872PFLU3871
PFLU205922 PFL_3641PFL_3640PFL_3639PFL_3638
PENT384676 PSEEN2084PSEEN2085PSEEN2086PSEEN2087
PCRY335284 PCRYO_0663PCRYO_0664PCRYO_0665PCRYO_1003
PCAR338963 PCAR_1978PCAR_1069PCAR_0101PCAR_0100
PATL342610 PATL_1886PATL_1887PATL_2184PATL_1888
PARC259536 PSYC_0692PSYC_0693PSYC_0694PSYC_1361
PAER208964 PA1792PA1793PA1794PA1795
PAER208963 PA14_41400PA14_41390PA14_41380PA14_41360
NOCE323261 NOC_2252NOC_2251NOC_2249
NMUL323848 NMUL_A1885NMUL_A2083NMUL_A1881
NMEN374833 NMCC_0485NMCC_0757NMCC_1462NMCC_0102
NMEN272831 NMC0483NMC0744NMC1478NMC2062
NMEN122587 NMA0723NMA1002NMA1748NMA0347
NMEN122586 NMB_0544NMB_0791NMB_1560NMB_2083
NGON242231 NGO1448NGO0376NGO1218NGO1993
NEUT335283 NEUT_0193NEUT_0871NEUT_0191
NEUR228410 NE0041NE2363NE0043
MSUC221988 MS0509MS0624MS1127MS0622
MSP400668 MMWYL1_2102MMWYL1_2103MMWYL1_2109MMWYL1_2110
MPET420662 MPE_A2459MPE_A2458MPE_A1314MPE_A2456
MMAR444158 MMARC6_1539MMARC6_1648MMARC6_1599
MMAR426368 MMARC7_0380MMARC7_0253MMARC7_0313
MMAR402880 MMARC5_0456MMARC5_0583MMARC5_0534
MMAR267377 MMP1128MMP1011MMP1060
MFLA265072 MFLA_0495MFLA_0496MFLA_2082MFLA_0500
MCAP243233 MCA_1318MCA_0516MCA_0509
MAQU351348 MAQU_1847MAQU_1846MAQU_1845MAQU_1844
LPNE400673 LPC_0973LPC_0406LPC_0731LPC_0732
LPNE297246 LPP1509LPP2783LPP1270LPP1271
LPNE297245 LPL1474LPL2652LPL1269LPL1270
LPNE272624 LPG1552LPG2726LPG1306LPG1307
LINT363253 LI0166LI0493LI0608
LCHO395495 LCHO_1666LCHO_1667LCHO_1956LCHO_1670
LBRE387344 LVIS_1174LVIS_0080LVIS_0580
KPNE272620 GKPORF_B4813GKPORF_B4814GKPORF_B5126GKPORF_B4815
JSP375286 MMA_2111MMA_2110MMA_0579MMA_2108
ILOI283942 IL1031IL1032IL1478IL1033
HSOM228400 HSM_1773HSM_0114HSM_1373HSM_0115
HSOM205914 HS_0498HS_0241HS_0895HS_0242
HINF71421 HI_0735HI_0079HI_1354HI_0078
HINF374930 CGSHIEE_08445CGSHIEE_02890CGSHIEE_04295
HINF281310 NTHI0892NTHI0092NTHI1812NTHI0091
HDUC233412 HD_1938HD_1092HD_1404HD_1093
HCHE349521 HCH_02151HCH_02152HCH_02153HCH_02154
HARS204773 HEAR1281HEAR1283HEAR0612HEAR1286
GURA351605 GURA_0635GURA_1331GURA_4167GURA_4174
GSUL243231 GSU_2456GSU_3319GSU_3366GSU_3365
GMET269799 GMET_2776GMET_2722GMET_0058GMET_0057
GBET391165 GBCGDNIH1_2248GBCGDNIH1_1416GBCGDNIH1_1136
FTUL458234 FTA_0534FTA_1705FTA_1781
FTUL418136 FTW_1637FTW_1622FTW_0301
FTUL401614 FTN_0528FTN_0539FTN_0310
FTUL393115 FTF0436CFTF0448CFTF1616
FTUL393011 FTH_0503FTH_1564FTH_1622
FTUL351581 FTL_0506FTL_1617FTL_1683
FSUC59374 FSU2812FSU0667FSU0840
FRANT LPXHGLNSCYSS
FPHI484022 FPHI_0308FPHI_0298FPHI_0516
ESP42895 ENT638_0978ENT638_0979ENT638_1195ENT638_0980
EFER585054 EFER_0566EFER_0567EFER_2429EFER_0568
ECOO157 YBBFPPIBGLNSCYSS
ECOL83334 ECS0586ECS0587ECS0710ECS0588
ECOL585397 ECED1_0544ECED1_0545ECED1_0661ECED1_0546
ECOL585057 ECIAI39_0487ECIAI39_0488ECIAI39_0637ECIAI39_0491
ECOL585056 ECUMN_0564ECUMN_0565ECUMN_0765ECUMN_0566
ECOL585055 EC55989_0538EC55989_0539EC55989_0666EC55989_0540
ECOL585035 ECS88_0524ECS88_0525ECS88_0716ECS88_0526
ECOL585034 ECIAI1_0526ECIAI1_0527ECIAI1_0658ECIAI1_0528
ECOL481805 ECOLC_3098ECOLC_3097ECOLC_2976ECOLC_3096
ECOL469008 ECBD_3134ECBD_3133ECBD_2981ECBD_3132
ECOL439855 ECSMS35_0569ECSMS35_0570ECSMS35_0702ECSMS35_0571
ECOL413997 ECB_00474ECB_00475ECB_00637ECB_00476
ECOL409438 ECSE_0549ECSE_0550ECSE_0741ECSE_0551
ECOL405955 APECO1_1490APECO1_3093APECO1_1384APECO1_1488
ECOL364106 UTI89_C0553UTI89_C0554UTI89_C0684UTI89_C0555
ECOL362663 ECP_0585ECP_0586ECP_0700ECP_0587
ECOL331111 ECE24377A_0563ECE24377A_0564ECE24377A_0706ECE24377A_0566
ECOL316407 ECK0517:JW0513:B0524ECK0518:JW0514:B0525ECK0668:JW0666:B0680ECK0519:JW0515:B0526
ECOL199310 C0639C0641C0766C0642
ECAR218491 ECA3155ECA3154ECA1328ECA3151
DVUL882 DVU_1873DVU_2951DVU_1579
DOLE96561 DOLE_1460DOLE_1595DOLE_1667
DNOD246195 DNO_0211DNO_0210DNO_1108DNO_0208
DHAF138119 DSY1841DSY4982DSY0447
DDES207559 DDE_1662DDE_0626DDE_2121
DARO159087 DARO_0914DARO_0915DARO_3447DARO_0919
CVIO243365 CV_3186CV_3185CV_1742CV_1746
CVES412965 COSY_0827COSY_0826COSY_0816COSY_0100
CSAL290398 CSAL_2054CSAL_2053CSAL_2052CSAL_2051
CRUT413404 RMAG_0921RMAG_0920RMAG_0909RMAG_0097
CPSY167879 CPS_3794CPS_3793CPS_3240CPS_3792
CPHY357809 CPHY_2857CPHY_3294CPHY_3324
CPER289380 CPR_2570CPR_0612CPR_2424
CPER195103 CPF_2891CPF_0626CPF_2737
CPER195102 CPE2566CPE0645CPE2427
CNOV386415 NT01CX_0653NT01CX_0275NT01CX_1093
CKLU431943 CKL_2308CKL_1022CKL_0201
CJAP155077 CJA_1995CJA_1994CJA_1681CJA_1682
CDIF272563 CD0331CD2059CD0052
CBLO291272 BPEN_311BPEN_332BPEN_312
CBLO203907 BFL303BFL324BFL304
CBEI290402 CBEI_0553CBEI_1429CBEI_0131
BVIE269482 BCEP1808_1984BCEP1808_1983BCEP1808_1369BCEP1808_1980
BTHA271848 BTH_I1937BTH_I1938BTH_I2665BTH_I1941
BSP36773 BCEP18194_A5388BCEP18194_A5387BCEP18194_A4549BCEP18194_A5384
BPSE320373 BURPS668_2549BURPS668_2548BURPS668_1633BURPS668_2545
BPSE320372 BURPS1710B_A2917BURPS1710B_A2916BURPS1710B_A1971BURPS1710B_A2913
BPSE272560 BPSL2247BPSL2246BPSL2012BPSL2243
BPET94624 BPET3454BPET3453BPET0894
BPER257313 BP1905BP1906BP3226
BPAR257311 BPP2280BPP2281BPP3578
BMAL320389 BMA10247_1436BMA10247_1435BMA10247_0701BMA10247_1432
BMAL320388 BMASAVP1_A2163BMASAVP1_A2162BMASAVP1_A1419BMASAVP1_A2159
BMAL243160 BMA_1660BMA_1659BMA_0892BMA_1656
BCEN331272 BCEN2424_2082BCEN2424_2081BCEN2424_1405BCEN2424_2078
BCEN331271 BCEN_5995BCEN_5996BCEN_0923BCEN_5999
BBRO257310 BB1732BB1733BB4013
BBAC264462 BD3188BD1371BD2317
BAMB398577 BAMMC406_1987BAMMC406_1986BAMMC406_1316BAMMC406_1983
BAMB339670 BAMB_2117BAMB_2116BAMB_1282BAMB_2113
ASP76114 EBA4786EBA4788EBA4065EBA4792
ASP62977 ACIAD1922ACIAD1921ACIAD1920ACIAD1481
ASP62928 AZO1055AZO1056AZO0836AZO1060
ASP232721 AJS_1619AJS_1620AJS_1608AJS_1623
ASAL382245 ASA_1612ASA_1614ASA_2825ASA_1615
APLE434271 APJL_1844APJL_0926APJL_0674APJL_0925
APLE416269 APL_1808APL_0914APL_0679APL_0913
AORE350688 CLOS_0898CLOS_0176CLOS_0469
AMET293826 AMET_1282AMET_4254AMET_4501
AHYD196024 AHA_2759AHA_2757AHA_1529AHA_2756
AFER243159 AFE_1105AFE_1106AFE_0877
AEHR187272 MLG_1812MLG_0922MLG_1810
ABOR393595 ABO_1204ABO_1206ABO_1207ABO_2135
ABAU360910 BAV2565BAV2564BAV2787
AAVE397945 AAVE_2315AAVE_2316AAVE_2300AAVE_2320


Organism features enriched in list (features available for 205 out of the 215 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00020351892
Arrangment:Pairs 0.002010152112
Arrangment:Singles 0.0067835113286
Disease:Bubonic_plague 0.001801666
Disease:Dysentery 0.001801666
Disease:Gastroenteritis 0.00204611013
Disease:Tularemia 0.005206655
Endospores:No 5.143e-1041211
Endospores:Yes 0.00348751053
GC_Content_Range4:0-40 5.634e-1238213
GC_Content_Range4:40-60 2.031e-9112224
GC_Content_Range7:0-30 0.0025885847
GC_Content_Range7:30-40 1.057e-830166
GC_Content_Range7:50-60 2.192e-1168107
Genome_Size_Range5:0-2 3.538e-1221155
Genome_Size_Range5:2-4 0.000807653197
Genome_Size_Range5:4-6 1.012e-15108184
Genome_Size_Range9:0-1 0.0033373327
Genome_Size_Range9:1-2 1.807e-918128
Genome_Size_Range9:2-3 0.000159426120
Genome_Size_Range9:4-5 2.023e-65496
Genome_Size_Range9:5-6 3.394e-85488
Genome_Size_Range9:6-8 0.00173082238
Gram_Stain:Gram_Neg 3.919e-25174333
Gram_Stain:Gram_Pos 2.231e-2010150
Habitat:Specialized 0.0013547953
Motility:No 1.607e-728151
Motility:Yes 2.922e-8125267
Optimal_temp.:- 0.0016998106257
Optimal_temp.:35-37 9.748e-71313
Oxygen_Req:Facultative 0.000903987201
Pathogenic_in:Animal 0.00333533366
Pathogenic_in:No 0.000539962226
Pathogenic_in:Plant 0.00220171115
Shape:Coccus 3.999e-71082
Shape:Rod 1.037e-15166347
Shape:Spiral 4.667e-6134
Temp._range:Mesophilic 0.0000662183473
Temp._range:Psychrophilic 0.001263789
Temp._range:Thermophilic 3.019e-6135



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 284
Effective number of orgs (counting one per cluster within 468 clusters): 223

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM41
XAUT78245 ncbi Xanthobacter autotrophicus Py21
WPIP80849 Wolbachia endosymbiont of Brugia malayi1
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS11
TTHE300852 ncbi Thermus thermophilus HB81
TTHE262724 ncbi Thermus thermophilus HB271
TROS309801 ncbi Thermomicrobium roseum DSM 51591
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TELO197221 ncbi Thermosynechococcus elongatus BP-11
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12511
TDEN243275 ncbi Treponema denticola ATCC 354051
TACI273075 ncbi Thermoplasma acidophilum DSM 17281
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen1
STRO369723 ncbi Salinispora tropica CNB-4400
STOK273063 ncbi Sulfolobus tokodaii 71
STHE299768 ncbi Streptococcus thermophilus CNRZ10661
STHE292459 ncbi Symbiobacterium thermophilum IAM 148631
STHE264199 ncbi Streptococcus thermophilus LMG 183111
SSUI391296 ncbi Streptococcus suis 98HAH331
SSUI391295 ncbi Streptococcus suis 05ZYH331
SSP84588 ncbi Synechococcus sp. WH 81021
SSP64471 ncbi Synechococcus sp. CC93110
SSP644076 Silicibacter sp. TrichCH4B1
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)1
SSP321327 ncbi Synechococcus sp. JA-3-3Ab1
SSP292414 ncbi Ruegeria sp. TM10401
SSP1131 Synechococcus sp. CC96050
SSOL273057 ncbi Sulfolobus solfataricus P21
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153051
SPYO160490 ncbi Streptococcus pyogenes M1 GAS1
SPNE488221 ncbi Streptococcus pneumoniae 705851
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-61
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-141
SPNE171101 ncbi Streptococcus pneumoniae R61
SPNE170187 ncbi Streptococcus pneumoniae G541
SPNE1313 Streptococcus pneumoniae1
SMEL266834 ncbi Sinorhizobium meliloti 10210
SMED366394 ncbi Sinorhizobium medicae WSM4191
SLAC55218 Ruegeria lacuscaerulensis1
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14351
SGOR29390 Streptococcus gordonii Challis0
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23380
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122281
SEPI176279 ncbi Staphylococcus epidermidis RP62A1
SELO269084 ncbi Synechococcus elongatus PCC 63011
SCO ncbi Streptomyces coelicolor A3(2)0
SAVE227882 ncbi Streptomyces avermitilis MA-46801
SAUR93062 ncbi Staphylococcus aureus aureus COL1
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83251
SAUR426430 ncbi Staphylococcus aureus aureus Newman1
SAUR418127 ncbi Staphylococcus aureus aureus Mu31
SAUR367830 Staphylococcus aureus aureus USA3001
SAUR359787 ncbi Staphylococcus aureus aureus JH11
SAUR359786 ncbi Staphylococcus aureus aureus JH91
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4761
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2521
SAUR273036 ncbi Staphylococcus aureus RF1221
SAUR196620 ncbi Staphylococcus aureus aureus MW21
SAUR158879 ncbi Staphylococcus aureus aureus N3151
SAUR158878 ncbi Staphylococcus aureus aureus Mu501
SARE391037 ncbi Salinispora arenicola CNS-2050
SALA317655 ncbi Sphingopyxis alaskensis RB22560
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99411
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170251
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170291
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.11
RSP357808 ncbi Roseiflexus sp. RS-10
RSP101510 ncbi Rhodococcus jostii RHA10
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332090
RPAL316058 ncbi Rhodopseudomonas palustris HaA21
RPAL316057 ncbi Rhodopseudomonas palustris BisB51
RPAL316056 ncbi Rhodopseudomonas palustris BisB181
RPAL316055 ncbi Rhodopseudomonas palustris BisA531
RPAL258594 ncbi Rhodopseudomonas palustris CGA0091
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38410
RETL347834 ncbi Rhizobium etli CFN 421
RDEN375451 ncbi Roseobacter denitrificans OCh 1141
RCAS383372 ncbi Roseiflexus castenholzii DSM 139410
RBEL391896 ncbi Rickettsia bellii OSU 85-3891
RBEL336407 ncbi Rickettsia bellii RML369-C1
RALB246199 Ruminococcus albus 81
RAKA293614 ncbi Rickettsia akari Hartford1
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257451
PMAR93060 ncbi Prochlorococcus marinus MIT 92151
PMAR74547 ncbi Prochlorococcus marinus MIT 93131
PMAR74546 ncbi Prochlorococcus marinus MIT 93121
PMAR59920 ncbi Prochlorococcus marinus NATL2A1
PMAR167555 ncbi Prochlorococcus marinus NATL1A1
PMAR167546 ncbi Prochlorococcus marinus MIT 93011
PMAR167542 ncbi Prochlorococcus marinus MIT 95151
PMAR167540 Prochlorococcus marinus pastoris MED4ax1
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13751
PMAR146891 ncbi Prochlorococcus marinus AS96011
PISL384616 ncbi Pyrobaculum islandicum DSM 41841
PGIN242619 ncbi Porphyromonas gingivalis W831
PAST100379 Onion yellows phytoplasma1
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135141
PAER178306 ncbi Pyrobaculum aerophilum IM21
OTSU357244 ncbi Orientia tsutsugamushi Boryong1
OIHE221109 ncbi Oceanobacillus iheyensis HTE8311
OCAR504832 ncbi Oligotropha carboxidovorans OM51
OANT439375 ncbi Ochrobactrum anthropi ATCC 491881
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2551
NSP387092 ncbi Nitratiruptor sp. SB155-21
NSP35761 Nocardioides sp.1
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21601
NHAM323097 ncbi Nitrobacter hamburgensis X141
NFAR247156 ncbi Nocardia farcinica IFM 101521
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124440
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-10
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra0
MTUB336982 ncbi Mycobacterium tuberculosis F110
MTHE264732 ncbi Moorella thermoacetica ATCC 390731
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H1
MTBRV ncbi Mycobacterium tuberculosis H37Rv0
MTBCDC ncbi Mycobacterium tuberculosis CDC15510
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30911
MSP266779 ncbi Chelativorans sp. BNC11
MSP189918 ncbi Mycobacterium sp. KMS0
MSP164757 ncbi Mycobacterium sp. JLS0
MSP164756 ncbi Mycobacterium sp. MCS0
MSME246196 ncbi Mycobacterium smegmatis MC2 1550
MSED399549 ncbi Metallosphaera sedula DSM 53481
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MLOT266835 ncbi Mesorhizobium loti MAFF3030991
MLEP272631 ncbi Mycobacterium leprae TN0
MKAN190192 ncbi Methanopyrus kandleri AV191
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26611
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK0
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MEXT419610 ncbi Methylobacterium extorquens PA11
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBUR259564 ncbi Methanococcoides burtonii DSM 62421
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P20
MBOV233413 ncbi Mycobacterium bovis AF2122/970
MAVI243243 ncbi Mycobacterium avium 1040
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MACE188937 ncbi Methanosarcina acetivorans C2A1
MABS561007 ncbi Mycobacterium abscessus ATCC 199770
LXYL281090 ncbi Leifsonia xyli xyli CTCB070
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53341
LREU557436 ncbi Lactobacillus reuteri DSM 200161
LPLA220668 ncbi Lactobacillus plantarum WCFS11
LMON265669 ncbi Listeria monocytogenes 4b F23651
LMON169963 ncbi Listeria monocytogenes EGD-e1
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82931
LLAC272623 ncbi Lactococcus lactis lactis Il14031
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1301
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566011
LINN272626 ncbi Listeria innocua Clip112621
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3651
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1971
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5501
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)0
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)0
KRAD266940 ncbi Kineococcus radiotolerans SRS302161
JSP290400 ncbi Jannaschia sp. CCS11
HWAL362976 ncbi Haloquadratum walsbyi DSM 167901
HSP64091 ncbi Halobacterium sp. NRC-11
HSAL478009 ncbi Halobacterium salinarum R11
HPYL85963 ncbi Helicobacter pylori J990
HPYL357544 ncbi Helicobacter pylori HPAG11
HPY ncbi Helicobacter pylori 266950
HMUK485914 ncbi Halomicrobium mukohataei DSM 122861
HMAR272569 ncbi Haloarcula marismortui ATCC 430491
HHEP235279 ncbi Helicobacter hepaticus ATCC 514490
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237791
HACI382638 ncbi Helicobacter acinonychis Sheeba0
GVIO251221 ncbi Gloeobacter violaceus PCC 74210
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-21
GOXY290633 ncbi Gluconobacter oxydans 621H1
GKAU235909 ncbi Geobacillus kaustophilus HTA4261
FSP1855 Frankia sp. EAN1pec0
FSP106370 ncbi Frankia sp. CcI30
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255861
FALN326424 ncbi Frankia alni ACN14a0
ERUM302409 ncbi Ehrlichia ruminantium Gardel1
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden1
ELIT314225 ncbi Erythrobacter litoralis HTCC25940
EFAE226185 ncbi Enterococcus faecalis V5831
DSP255470 ncbi Dehalococcoides sp. CBDB11
DSP216389 ncbi Dehalococcoides sp. BAV11
DRAD243230 ncbi Deinococcus radiodurans R11
DGEO319795 ncbi Deinococcus geothermalis DSM 113001
DETH243164 ncbi Dehalococcoides ethenogenes 1951
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTET212717 ncbi Clostridium tetani E881
CTEP194439 ncbi Chlorobium tepidum TLS1
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS1
CSP78 Caulobacter sp.1
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE250
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10620
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3820
CMIC31964 ncbi Clavibacter michiganensis sepedonicus0
CMAQ397948 ncbi Caldivirga maquilingensis IC-1671
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF81
CJEJ407148 ncbi Campylobacter jejuni jejuni 811161
CJEJ360109 ncbi Campylobacter jejuni doylei 269.971
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1761
CJEJ195099 ncbi Campylobacter jejuni RM12211
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111681
CJEI306537 ncbi Corynebacterium jeikeium K4110
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334061
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3810
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130320
CFET360106 ncbi Campylobacter fetus fetus 82-400
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CEFF196164 ncbi Corynebacterium efficiens YS-3140
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131290
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C1
CCUR360105 ncbi Campylobacter curvus 525.921
CCON360104 ncbi Campylobacter concisus 138261
CCHL340177 ncbi Chlorobium chlorochromatii CaD31
CCAV227941 ncbi Chlamydophila caviae GPIC0
CAULO ncbi Caulobacter crescentus CB151
CACE272562 ncbi Clostridium acetobutylicum ATCC 8241
CABO218497 ncbi Chlamydophila abortus S26/30
BXEN266265 ncbi Burkholderia xenovorans LB4000
BWEI315730 ncbi Bacillus weihenstephanensis KBAB41
BTUR314724 ncbi Borrelia turicatae 91E1350
BTRI382640 ncbi Bartonella tribocorum CIP 1054761
BTHU412694 ncbi Bacillus thuringiensis Al Hakam1
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-271
BSUI470137 ncbi Brucella suis ATCC 234451
BSUI204722 ncbi Brucella suis 13301
BSUB ncbi Bacillus subtilis subtilis 1681
BSP376 Bradyrhizobium sp.1
BQUI283165 ncbi Bartonella quintana Toulouse1
BPUM315750 ncbi Bacillus pumilus SAFR-0321
BOVI236 Brucella ovis1
BMEL359391 ncbi Brucella melitensis biovar Abortus 23081
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M1
BLON206672 ncbi Bifidobacterium longum NCC27050
BLIC279010 ncbi Bacillus licheniformis ATCC 145801
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1101
BHER314723 ncbi Borrelia hermsii DAH0
BHEN283166 ncbi Bartonella henselae Houston-10
BGAR290434 ncbi Borrelia garinii PBi0
BCER572264 ncbi Bacillus cereus 03BB1021
BCER405917 Bacillus cereus W1
BCER315749 ncbi Bacillus cytotoxicus NVH 391-981
BCER288681 ncbi Bacillus cereus E33L1
BCER226900 ncbi Bacillus cereus ATCC 145791
BCAN483179 ncbi Brucella canis ATCC 233651
BBUR224326 ncbi Borrelia burgdorferi B310
BBAC360095 ncbi Bartonella bacilliformis KC5831
BANT592021 ncbi Bacillus anthracis A02481
BANT568206 ncbi Bacillus anthracis CDC 6841
BANT261594 ncbi Bacillus anthracis Ames Ancestor1
BANT260799 ncbi Bacillus anthracis Sterne1
BAMY326423 ncbi Bacillus amyloliquefaciens FZB421
BAFZ390236 ncbi Borrelia afzelii PKo0
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9411
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB1
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP1667 Arthrobacter sp.0
APHA212042 ncbi Anaplasma phagocytophilum HZ1
APER272557 ncbi Aeropyrum pernix K11
ANAE240017 Actinomyces oris MG10
ACEL351607 ncbi Acidothermus cellulolyticus 11B0
ABUT367737 ncbi Arcobacter butzleri RM40181
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3450
AAUR290340 ncbi Arthrobacter aurescens TC10


Names of the homologs of the genes in the group in each of these orgs
  EG12666   EG10758   EG10390   EG10196   
ZMOB264203 ZMO1964
XAUT78245 XAUT_4717
WPIP80849 WB_0676
UURE95667
UURE95664
UPAR505682
TWHI218496
TWHI203267
TVOL273116 TVN1086
TTHE300852 TTHA0549
TTHE262724 TT_C0181
TROS309801 TRD_0697
TPAL243276
TELO197221 TLL0506
TDEN326298 TMDEN_1532
TDEN243275 TDE_0204
TACI273075 TA0942
SWOL335541 SWOL_2459
STRO369723
STOK273063 ST1423
STHE299768 STR0084
STHE292459 STH3119
STHE264199 STU0084
SSUI391296 SSU98_1929
SSUI391295 SSU05_1924
SSP84588 SYNW0701OR1958
SSP64471
SSP644076 SCH4B_1391
SSP321332 CYB_1821
SSP321327 CYA_2715
SSP292414 TM1040_2275
SSP1131
SSOL273057 SSO0093
SSAP342451 SSP2226
SPYO160490 SPY1941
SPNE488221 SP70585_0655
SPNE487214 SPH_0689
SPNE487213 SPT_0620
SPNE171101 SPR0519
SPNE170187 SPN03273
SPNE1313 SPJ_0545
SMEL266834
SMED366394 SMED_2526
SLAC55218 SL1157_0562
SHAE279808 SH2479
SGOR29390
SERY405948
SEPI176280 SE_0292
SEPI176279 SERP0170
SELO269084 SYC2426_D
SCO
SAVE227882 SAV3967
SAUR93062 SACOL0576
SAUR93061 SAOUHSC_00511
SAUR426430 NWMN_0492
SAUR418127 SAHV_0527
SAUR367830 SAUSA300_0515
SAUR359787 SAURJH1_0566
SAUR359786 SAURJH9_0552
SAUR282459 SAS0487
SAUR282458 SAR0533
SAUR273036 SAB0480
SAUR196620 MW0485
SAUR158879 SA0488
SAUR158878 SAV0530
SARE391037
SALA317655
RXYL266117 RXYL_2173
RSPH349102 RSPH17025_0382
RSPH349101 RSPH17029_2455
RSPH272943 RSP_0797
RSP357808
RSP101510
RSAL288705
RPAL316058 RPB_2811
RPAL316057 RPD_2841
RPAL316056 RPC_2452
RPAL316055 RPE_2569
RPAL258594 RPA2905
RLEG216596
RETL347834 RHE_CH03786
RDEN375451 RD1_1219
RCAS383372
RBEL391896 A1I_00460
RBEL336407 RBE_1281
RALB246199 GRAORF_2819
RAKA293614 A1C_00615
PPEN278197 PEPE_1500
PMAR93060 P9215_13451
PMAR74547 PMT1159
PMAR74546 PMT9312_1237
PMAR59920 PMN2A_0749
PMAR167555 NATL1_15891
PMAR167546 P9301ORF_1351
PMAR167542 P9515ORF_1364
PMAR167540 PMM1141
PMAR167539 PRO_1235
PMAR146891 A9601_13161
PISL384616 PISL_0371
PGIN242619 PG_1951
PAST100379 PAM620
PARS340102 PARS_1338
PAER178306 PAE2969
OTSU357244 OTBS_1957
OIHE221109 OB0099
OCAR504832 OCAR_5973
OANT439375 OANT_1270
NWIN323098 NWI_1843
NSP387092 NIS_1641
NSP35761 NOCA_4021
NSEN222891
NPHA348780 NP3694A
NHAM323097 NHAM_1710
NFAR247156 NFA1910
NARO279238
MVAN350058
MTUB419947
MTUB336982
MTHE264732 MOTH_2484
MTHE187420 MTH51
MTBRV
MTBCDC
MSYN262723
MSTA339860 MSP_0923
MSP266779 MESO_3026
MSP189918
MSP164757
MSP164756
MSME246196
MSED399549 MSED_2131
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MLOT266835 MLR3479
MLEP272631
MKAN190192 MK0757
MJAN243232 MJ_1377
MHYO295358
MHYO262722
MHYO262719
MGIL350054
MGEN243273
MFLO265311
MEXT419610 MEXT_4745
MCAP340047
MBUR259564 MBUR_2335
MBOV410289
MBOV233413
MAVI243243
MART243272
MACE188937 MA0587
MABS561007
LXYL281090
LWEL386043 LWE0202
LREU557436 LREU_0303
LPLA220668 LP_0610
LMON265669 LMOF2365_0251
LMON169963 LMO0239
LMES203120 LEUM_0162
LLAC272623 L0348
LINT267671 LIC_11438
LINT189518 LA2535
LINN272626 LIN0271
LDEL321956 LBUL_1554
LBOR355277 LBJ_1679
LBOR355276 LBL_1909
LBIF456481
LBIF355278
KRAD266940 KRAD_0911
JSP290400 JANN_3636
HWAL362976 HQ2888A
HSP64091 VNG1153G
HSAL478009 OE2652F
HPYL85963
HPYL357544 HPAG1_0453
HPY
HMUK485914 HMUK_2609
HMAR272569 RRNAC0085
HHEP235279
HAUR316274 HAUR_3108
HACI382638
GVIO251221
GTHE420246 GTNG_0085
GOXY290633 GOX1776
GKAU235909 GK0085
FSP1855
FSP106370
FNUC190304 FN1579
FALN326424
ERUM302409 ERGA_CDS_03270
ERUM254945 ERWE_CDS_03320
ELIT314225
EFAE226185 EF_0045
DSP255470 CBDBA76
DSP216389 DEHABAV1_0055
DRAD243230 DR_2611
DGEO319795 DGEO_2188
DETH243164 DET_0061
CTRA471473
CTRA471472
CTET212717 CTC_02622
CTEP194439 CT_1989
CSUL444179 SMGWSS_023
CSP78 CAUL_4529
CPRO264201
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPEL335992
CMUR243161
CMIC443906
CMIC31964
CMAQ397948 CMAQ_1533
CKOR374847 KCR_1075
CJEJ407148 C8J_1231
CJEJ360109 JJD26997_0434
CJEJ354242 CJJ81176_1305
CJEJ195099 CJE_1480
CJEJ192222 CJ1288C
CJEI306537
CHUT269798 CHU_0615
CHOM360107
CGLU196627
CFET360106
CFEL264202
CEFF196164
CDIP257309
CDES477974 DAUD_0188
CCUR360105 CCV52592_0548
CCON360104 CCC13826_0242
CCHL340177 CAG_0210
CCAV227941
CAULO CC0460
CACE272562 CAC3177
CABO218497
BXEN266265
BWEI315730 BCERKBAB4_0084
BTUR314724
BTRI382640 BT_0938
BTHU412694 BALH_0089
BTHU281309 BT9727_0086
BSUI470137 BSUIS_B1125
BSUI204722 BR_1647
BSUB BSU00940
BSP376 BRADO4124
BQUI283165 BQ06840
BPUM315750 BPUM_0079
BOVI236 GBOORF1659
BMEL359391 BAB1_1662
BMEL224914 BMEI0381
BLON206672
BLIC279010 BL03269
BJAP224911 BLL4837
BHER314723
BHEN283166
BGAR290434
BCER572264 BCA_0118
BCER405917 BCE_0089
BCER315749 BCER98_0084
BCER288681 BCE33L0085
BCER226900 BC_0110
BCAN483179 BCAN_A1688
BBUR224326
BBAC360095 BARBAKC583_0600
BANT592021 BAA_0105
BANT568206 BAMEG_0105
BANT261594 GBAA0089
BANT260799 BAS0089
BAMY326423 RBAM_001190
BAFZ390236
BABO262698 BRUAB1_1635
AYEL322098 AYWB_116
AURANTIMONAS
ASP1667
APHA212042 APH_0072
APER272557 APE2317
ANAE240017
ACEL351607
ABUT367737 ABU_0427
ABAC204669
AAUR290340


Organism features enriched in list (features available for 263 out of the 284 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Clusters 9.902e-71717
Disease:Food_poisoning 0.000716999
Disease:Pharyngitis 0.001616588
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 0.00014011111
Disease:bronchitis_and_pneumonitis 0.001616588
Endospores:No 2.423e-9129211
GC_Content_Range4:0-40 0.0000277119213
GC_Content_Range4:40-60 7.736e-1066224
GC_Content_Range4:60-100 0.004130078145
GC_Content_Range7:30-40 0.000151794166
GC_Content_Range7:40-50 0.001326139117
GC_Content_Range7:50-60 1.712e-627107
GC_Content_Range7:70-100 0.00194871011
Genome_Size_Range5:0-2 0.000784086155
Genome_Size_Range5:2-4 0.0020548104197
Genome_Size_Range5:4-6 4.904e-756184
Genome_Size_Range9:0-1 0.00034442127
Genome_Size_Range9:2-3 0.000783169120
Genome_Size_Range9:4-5 0.00003872696
Genome_Size_Range9:5-6 0.00724313088
Gram_Stain:Gram_Neg 1.907e-10113333
Gram_Stain:Gram_Pos 1.288e-10101150
Motility:No 4.411e-794151
Motility:Yes 0.000107499267
Optimal_temp.:30-37 4.304e-71818
Oxygen_Req:Anaerobic 0.000165030102
Shape:Rod 1.012e-7126347
Shape:Sphere 0.00039431619
Shape:Spiral 6.802e-72934
Temp._range:Thermophilic 0.00078492535



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181710.6780
GLYCOCAT-PWY (glycogen degradation I)2461780.6431
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3001910.5911
AST-PWY (arginine degradation II (AST pathway))1201070.5615
PWY-1269 (CMP-KDO biosynthesis I)3251950.5599
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2911810.5453
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2901800.5410
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2961820.5399
NAGLIPASYN-PWY (lipid IVA biosynthesis)3481980.5297
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251530.5297
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951400.5294
ECASYN-PWY (enterobacterial common antigen biosynthesis)1911380.5279
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)1761300.5194
PWY-5386 (methylglyoxal degradation I)3051820.5183
PWY-5918 (heme biosynthesis I)2721700.5183
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2861720.4966
PWY-5913 (TCA cycle variation IV)3011770.4941
PWY-5755 (4-hydroxybenzoate biosynthesis II (bacteria and fungi))81760.4823
GLUTATHIONESYN-PWY (glutathione biosynthesis)3391870.4746
PWY-4041 (γ-glutamyl cycle)2791650.4666
TYRFUMCAT-PWY (tyrosine degradation I)1841250.4552
PWY-5857 (ubiquinone-10 biosynthesis (prokaryotic))1831240.4510
LIPASYN-PWY (phospholipases)2121340.4335
PWY-5669 (phosphatidylethanolamine biosynthesis I)4162040.4332
PWY-5855 (ubiquinone-7 biosynthesis (prokaryotic))1911250.4327
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)1491060.4320
KDOSYN-PWY (KDO transfer to lipid IVA I)1801200.4312
KDO-NAGLIPASYN-PWY (superpathway of KDO2-lipid A biosynthesis)1791190.4270
GLUCONSUPER-PWY (D-gluconate degradation)2291390.4200
PWY-5148 (acyl-CoA hydrolysis)2271380.4186
UBISYN-PWY (ubiquinol-8 biosynthesis (prokaryotic))3981960.4123
PWY-5856 (ubiquinone-9 biosynthesis (prokaryotic))2551480.4120
PWY0-1182 (trehalose degradation II (trehalase))70620.4046
PWY0-845 (superpathway of pyridoxal 5'-phosphate biosynthesis and salvage)3291730.4022



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG10758   EG10390   EG10196   
EG126660.9998050.9989950.999654
EG107580.9989130.999713
EG103900.999013
EG10196



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PAIRWISE BLAST SCORES:

  EG12666   EG10758   EG10390   EG10196   
EG126660.0f0---
EG10758-0.0f0--
EG10390--0.0f0-
EG10196---0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- TRNA-CHARGING-PWY (tRNA charging pathway) (degree of match pw to cand: 0.018, degree of match cand to pw: 0.500, average score: 0.559)
  Genes in pathway or complex:
             0.4255 0.0719 EG10071 (argS) ARGS-MONOMER (arginyl-tRNA synthetase)
   *in cand* 0.9996 0.9990 EG10196 (cysS) CYSS-MONOMER (cysteinyl-tRNA synthetase)
   *in cand* 0.9992 0.9989 EG10390 (glnS) GLNS-MONOMER (glutaminyl-tRNA synthetase)
             0.8800 0.7306 EG10407 (gltX) GLURS-MONOMER (glutamyl-tRNA synthetase)
             0.3253 0.0649 EG10492 (ileS) ILES-MONOMER (isoleucyl-tRNA synthetase)
             0.7212 0.3730 EG10532 (leuS) LEUS-MONOMER (leucyl-tRNA synthetase)
             0.2318 0.0494 EG11067 (valS) VALS-MONOMER (valyl-tRNA synthetase)
             0.4946 0.2946 EG10034 (alaS) ALAS-MONOMER (alanyl-tRNA synthetase)
             0.7819 0.4444 EG10094 (asnS) ASNS-MONOMER (asparaginyl-tRNA synthetase)
             0.4593 0.1387 EG10097 (aspS) ASPS-MONOMER (aspartyl-tRNA synthetase)
             0.2466 0.0034 EG11043 (tyrS) TYRS-MONOMER (tyrosyl-tRNA synthetase)
             0.1861 0.0416 EG11030 (trpS) TRPS-MONOMER (tryptophanyl-tRNA synthetase)
             0.8648 0.7417 EG11001 (thrS) THRS-MONOMER (threonyl-tRNA synthetase)
             0.9662 0.9300 EG10947 (serS) SERS-MONOMER (seryl-tRNA synthetase)
             0.6116 0.1804 EG10770 (proS) PROS-MONOMER (prolyl-tRNA synthetase)
             0.7500 0.6069 EG10710 (pheT) PHET-MONOMER (phenylalanyl-tRNA synthetase β-chain)
             0.7920 0.6956 EG10709 (pheS) PHES-MONOMER (phenylalanyl-tRNA synthetase α-chain)
             0.7572 0.4873 EG10586 (metG) METG-MONOMER (methionyl-tRNA synthetase)
             0.8491 0.7333 EG10553 (lysU) LYSU-MONOMER (lysyl-tRNA synthetase)
             0.8473 0.7619 EG10552 (lysS) LYSS-MONOMER (lysyl tRNA synthetase (LysRSs), constitutive)
             0.5735 0.1647 EG10453 (hisS) HISS-MONOMER (histidyl-tRNA synthetase)
             0.0320 0.0025 EG10409 (glyQ) GLYQ-MONOMER (glycyl-tRNA synthetase, α subunit)
             0.0028 0.0014 EG10410 (glyS) GLYS-MONOMER (glycyl-tRNA synthetase, β subunit)
                NIL    NIL EG30036 (glyT) glyT-tRNA (tRNAglyT)
                NIL    NIL EG30037 (glyU) glyU-tRNA (tRNAglyU)
                NIL    NIL EG30038 (glyV) glyV-tRNA (tRNAglyV)
                NIL    NIL EG30039 (glyW) glyW-tRNA (tRNAglyW)
                NIL    NIL EG30040 (glyX) glyX-tRNA (tRNAglyX)
                NIL    NIL EG30041 (glyY) glyY-tRNA (tRNAglyY)
                NIL    NIL EG30042 (hisR) hisR-tRNA (tRNAhisR)
                NIL    NIL EG30055 (lysT) lysT-tRNA (tRNAlysT)
                NIL    NIL EG30056 (lysV) lysV-tRNA (tRNAlysV)
                NIL    NIL EG30057 (lysW) lysW-tRNA (tRNAlysW)
                NIL    NIL G6390 (lysY) RNA0-301 (tRNAlysY)
                NIL    NIL G6391 (lysZ) RNA0-302 (tRNAlysZ)
                NIL    NIL G6392 (lysQ) RNA0-303 (tRNAlysQ)
                NIL    NIL EG30058 (metT) metT-tRNA (tRNAmetT)
                NIL    NIL EG30059 (metU) metU-tRNA (tRNAmetU)
                NIL    NIL EG31117 (metW) metW-tRNA (tRNAmetW)
                NIL    NIL EG30060 (metV) RNA0-306 (tRNAmetV)
                NIL    NIL EG30061 (metY) metY-tRNA (tRNAmetY)
                NIL    NIL EG30062 (metZ) metZ-tRNA (tRNAmetZ)
                NIL    NIL EG30064 (pheU) pheU-tRNA (tRNApheU)
                NIL    NIL EG30065 (pheV) pheV-tRNA (tRNApheV)
                NIL    NIL EG30066 (proK) proK-tRNA (tRNAproK)
                NIL    NIL EG30067 (proL) proL-tRNA (tRNAproL)
                NIL    NIL EG30068 (proM) proM-tRNA (tRNAproM)
                NIL    NIL EG30092 (selC) selC-tRNA (tRNAsec)
                NIL    NIL EG30093 (serT) serT-tRNA (tRNAserT)
                NIL    NIL EG30094 (serU) serU-tRNA (tRNAserU)
                NIL    NIL EG30095 (serV) serV-tRNA (tRNAserV)
                NIL    NIL EG30096 (serW) serW-tRNA (tRNAserW)
                NIL    NIL EG30097 (serX) serX-tRNA (tRNAserX)
                NIL    NIL EG30101 (thrT) thrT-tRNA (tRNAthrT)
                NIL    NIL EG30102 (thrU) thrU-tRNA (tRNAthrU)
                NIL    NIL EG30103 (thrV) thrV-tRNA (tRNAthrV)
                NIL    NIL EG30104 (thrW) thrW-tRNA (tRNAthrW)
                NIL    NIL EG30105 (trpT) trpT-tRNA (tRNAtrpT)
                NIL    NIL EG30106 (tyrT) tyrT-tRNA (tRNAtyrT)
                NIL    NIL EG30107 (tyrU) tyrU-tRNA (tRNAtyrU)
                NIL    NIL EG30108 (tyrV) tyrV-tRNA (tRNAtyrV)
                NIL    NIL EG30023 (aspT) aspT-tRNA (tRNAaspT)
                NIL    NIL EG30024 (aspU) aspU-tRNA (tRNAaspU)
                NIL    NIL EG30025 (aspV) aspV-tRNA (tRNAaspV)
                NIL    NIL EG30020 (asnT) asnT-tRNA (tRNAasnT)
                NIL    NIL EG30021 (asnU) asnU-tRNA (tRNAasnU)
                NIL    NIL EG30022 (asnV) asnV-tRNA (tRNAasnV)
                NIL    NIL G7069 (asnW) RNA0-304 (tRNAasnW)
                NIL    NIL EG30008 (alaT) alaT-tRNA (tRNAalaT)
                NIL    NIL EG30009 (alaU) alaU-tRNA (tRNAalaU)
                NIL    NIL EG30010 (alaV) alaV-tRNA (tRNAalaV)
                NIL    NIL EG30011 (alaW) alaW-tRNA (tRNAalaW)
                NIL    NIL EG30012 (alaX) alaX-tRNA (tRNAalaX)
                NIL    NIL EG30109 (valT) valT-tRNA (tRNAvalT)
                NIL    NIL EG30110 (valU) valU-tRNA (tRNAvalU)
                NIL    NIL EG30111 (valV) valV-tRNA (tRNAvalV)
                NIL    NIL EG30112 (valW) valW-tRNA (tRNAvalW)
                NIL    NIL EG30113 (valX) valX-tRNA (tRNAvalX)
                NIL    NIL EG30114 (valY) valY-tRNA (tRNAvalY)
                NIL    NIL G6389 (valZ) RNA0-300 (tRNAvalZ)
                NIL    NIL EG30047 (leuP) leuP-tRNA (tRNAleuP)
                NIL    NIL EG30048 (leuQ) leuQ-tRNA (tRNAleuQ)
                NIL    NIL EG30049 (leuT) leuT-tRNA (tRNAleuT)
                NIL    NIL EG30050 (leuU) leuU-tRNA (tRNAleuU)
                NIL    NIL EG30051 (leuV) leuV-tRNA (tRNAleuV)
                NIL    NIL EG30052 (leuW) leuW-tRNA (tRNAleuW)
                NIL    NIL EG30053 (leuX) leuX-tRNA (tRNAleuX)
                NIL    NIL EG30054 (leuZ) leuZ-tRNA (tRNAleuZ)
                NIL    NIL EG30043 (ileT) ileT-tRNA (tRNAileT)
                NIL    NIL EG30044 (ileU) ileU-tRNA (tRNAileU)
                NIL    NIL EG30045 (ileV) ileV-tRNA (tRNAileV)
                NIL    NIL EG30046 (ileX) ileX-tRNA (tRNAileX)
                NIL    NIL G7387 (ileY) RNA0-305 (tRNAileY)
                NIL    NIL EG30032 (gltT) gltT-tRNA (tRNAgltT)
                NIL    NIL EG30033 (gltU) gltU-tRNA (tRNAgltU)
                NIL    NIL EG30034 (gltV) gltV-tRNA (tRNAgltV)
                NIL    NIL EG30035 (gltW) gltW-tRNA (tRNAgltW)
                NIL    NIL EG30028 (glnU) glnU-tRNA (tRNAglnU)
                NIL    NIL EG30029 (glnV) glnV-tRNA (tRNAglnV)
                NIL    NIL EG30030 (glnW) glnW-tRNA (tRNAglnW)
                NIL    NIL EG30031 (glnX) glnX-tRNA (tRNAglnX)
                NIL    NIL G7991 (cysT) cysT-tRNA (tRNAcysT)
                NIL    NIL EG30013 (argQ) argQ-tRNA (tRNAargQ)
                NIL    NIL EG30014 (argU) argU-tRNA (tRNAargU)
                NIL    NIL EG30015 (argV) argV-tRNA (tRNAargV)
                NIL    NIL EG30016 (argW) argW-tRNA (tRNAargW)
                NIL    NIL EG30017 (argX) argX-tRNA (tRNAargX)
                NIL    NIL EG30018 (argY) argY-tRNA (tRNAargY)
                NIL    NIL EG30019 (argZ) argZ-tRNA (tRNAargZ)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9996 0.9989 EG10758 (ppiB) EG10758-MONOMER (peptidyl-prolyl cis-trans isomerase B (rotamase B))
   *in cand* 0.9996 0.9990 EG12666 (lpxH) EG12666-MONOMER (UDP-2,3-diacylglucosamine hydrolase)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10196 EG10758 EG12666 (centered at EG10758)
EG10390 (centered at EG10390)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  EG12666   EG10758   EG10390   EG10196   
212/623242/623376/623409/623
AAEO224324:0:Tyes--1090
AAVE397945:0:Tyes1415019
ABAU360910:0:Tyes10219-
ABOR393595:0:Tyes023949
ABUT367737:0:Tyes-0--
ACAU438753:0:Tyes--4190
ACRY349163:8:Tyes--078
ADEH290397:0:Tyes--13370
AEHR187272:0:Tyes8800-878
AFER243159:0:Tyes226227-0
AFUL224325:0:Tyes--0147
AHYD196024:0:Tyes1201119901198
ALAI441768:0:Tyes-0547-
AMAR234826:0:Tyes--0310
AMAR329726:7:Tyes---0
AMAR329726:9:Tyes--0-
AMET293826:0:Tyes-028743194
AORE350688:0:Tyes-7140292
APER272557:0:Tyes--0-
APHA212042:0:Tyes--0-
APLE416269:0:Tyes11712390238
APLE434271:0:Tno12092490248
ASAL382245:5:Tyes0211703
ASP232721:2:Tyes1112015
ASP62928:0:Tyes2302310235
ASP62977:0:Tyes4164154140
ASP76114:2:Tyes4194200423
AVAR240292:3:Tyes--11470
AYEL322098:4:Tyes--0-
BABO262698:1:Tno--0-
BAMB339670:3:Tno8578560853
BAMB398577:3:Tno6806790676
BAMY326423:0:Tyes---0
BANT260799:0:Tno---0
BANT261594:2:Tno---0
BANT568206:2:Tyes---0
BANT592021:2:Tno---0
BAPH198804:0:Tyes--067
BAPH372461:0:Tyes--041
BBAC264462:0:Tyes1701-0890
BBAC360095:0:Tyes--0-
BBRO257310:0:Tyes012304-
BCAN483179:1:Tno--0-
BCEN331271:0:Tno01-4
BCEN331271:2:Tno--0-
BCEN331272:3:Tyes6766750672
BCER226900:1:Tyes---0
BCER288681:0:Tno---0
BCER315749:1:Tyes---0
BCER405917:1:Tyes---0
BCER572264:1:Tno---0
BCIC186490:0:Tyes--025
BCLA66692:0:Tyes-624-0
BFRA272559:1:Tyes0-2280-
BFRA295405:0:Tno0-2317-
BHAL272558:0:Tyes--02
BJAP224911:0:Fyes--0-
BLIC279010:0:Tyes---0
BMAL243160:1:Tno6776760673
BMAL320388:1:Tno7287270724
BMAL320389:1:Tyes7217200717
BMEL224914:1:Tno--0-
BMEL359391:1:Tno--0-
BOVI236:1:Tyes--0-
BPAR257311:0:Tno011232-
BPER257313:0:Tyes011215-
BPET94624:0:Tyes258925880-
BPSE272560:1:Tyes2412400237
BPSE320372:1:Tno8508490846
BPSE320373:1:Tno8828810878
BPUM315750:0:Tyes---0
BQUI283165:0:Tyes--0-
BSP107806:2:Tyes--072
BSP36773:2:Tyes8578560853
BSP376:0:Tyes--0-
BSUB:0:Tyes---0
BSUI204722:1:Tyes--0-
BSUI470137:0:Tno--0-
BTHA271848:1:Tno017134
BTHE226186:0:Tyes2411-0-
BTHU281309:1:Tno---0
BTHU412694:1:Tno---0
BTRI382640:1:Tyes--0-
BVIE269482:7:Tyes6096080605
BWEI315730:4:Tyes---0
CACE272562:1:Tyes---0
CAULO:0:Tyes---0
CBEI290402:0:Tyes-41912860
CBLO203907:0:Tyes0-211
CBLO291272:0:Tno0-201
CBOT36826:1:Tno-58-0
CBOT441770:0:Tyes-58-0
CBOT441771:0:Tno-58-0
CBOT441772:1:Tno-59-0
CBOT498213:1:Tno-57-0
CBOT508765:1:Tyes-413-0
CBOT515621:2:Tyes-58-0
CBOT536232:0:Tno-62-0
CBUR227377:1:Tyes2--0
CBUR360115:1:Tno2--0
CBUR434922:2:Tno2--0
CCHL340177:0:Tyes0---
CCON360104:2:Tyes--0-
CCUR360105:0:Tyes--0-
CDES477974:0:Tyes---0
CDIF272563:1:Tyes-28520590
CHUT269798:0:Tyes0---
CHYD246194:0:Tyes--20
CJAP155077:0:Tyes30330201
CJEJ192222:0:Tyes--0-
CJEJ195099:0:Tno--0-
CJEJ354242:2:Tyes--0-
CJEJ360109:0:Tyes--0-
CJEJ407148:0:Tno--0-
CKLU431943:1:Tyes-20868070
CKOR374847:0:Tyes--0-
CMAQ397948:0:Tyes--0-
CMET456442:0:Tyes-01785-
CNOV386415:0:Tyes-194215960
CPER195102:1:Tyes-199301838
CPER195103:0:Tno-217802039
CPER289380:3:Tyes-188301750
CPHY357809:0:Tyes-0432461
CPSY167879:0:Tyes5275260525
CRUT413404:0:Tyes7687677560
CSAL290398:0:Tyes3210
CSP501479:7:Fyes--0-
CSP501479:8:Fyes0---
CSP78:2:Tyes---0
CSUL444179:0:Tyes--0-
CTEP194439:0:Tyes0---
CTET212717:0:Tyes---0
CVES412965:0:Tyes6976966860
CVIO243365:0:Tyes1464146304
DARO159087:0:Tyes0125445
DDES207559:0:Tyes-105001520
DETH243164:0:Tyes---0
DGEO319795:1:Tyes--0-
DHAF138119:0:Tyes-142145780
DNOD246195:0:Tyes328680
DOLE96561:0:Tyes-0135207
DPSY177439:2:Tyes--0190
DRAD243230:3:Tyes--0-
DRED349161:0:Tyes--04
DSHI398580:5:Tyes--10640
DSP216389:0:Tyes---0
DSP255470:0:Tno---0
DVUL882:1:Tyes-29213630
ECAN269484:0:Tyes--4930
ECAR218491:0:Tyes1832183101829
ECHA205920:0:Tyes--0534
ECOL199310:0:Tno021233
ECOL316407:0:Tno011552
ECOL331111:6:Tno011312
ECOL362663:0:Tno011182
ECOL364106:1:Tno011312
ECOL405955:2:Tyes029191122
ECOL409438:6:Tyes012002
ECOL413997:0:Tno011642
ECOL439855:4:Tno011252
ECOL469008:0:Tno1501490148
ECOL481805:0:Tno1291280127
ECOL585034:0:Tno011342
ECOL585035:0:Tno011852
ECOL585055:0:Tno011312
ECOL585056:2:Tno012042
ECOL585057:0:Tno011544
ECOL585397:0:Tno011122
ECOL83334:0:Tno011322
ECOLI:0:Tno011572
ECOO157:0:Tno011292
EFAE226185:3:Tyes---0
EFER585054:1:Tyes0118482
ERUM254945:0:Tyes---0
ERUM302409:0:Tno---0
ESP42895:1:Tyes012222
FJOH376686:0:Tyes0-417-
FMAG334413:1:Tyes-332-0
FNOD381764:0:Tyes--1020
FNUC190304:0:Tyes---0
FPHI484022:1:Tyes10-0228
FRANT:0:Tno0-101097
FSUC59374:0:Tyes20830171-
FTUL351581:0:Tno0-9741029
FTUL393011:0:Tno0-878920
FTUL393115:0:Tyes0-101078
FTUL401614:0:Tyes216-2270
FTUL418136:0:Tno1111-11010
FTUL458234:0:Tno0-904954
GBET391165:0:Tyes1112-2800
GFOR411154:0:Tyes55-0-
GKAU235909:1:Tyes---0
GMET269799:1:Tyes2723266910
GOXY290633:5:Tyes---0
GSUL243231:0:Tyes0857904903
GTHE420246:1:Tyes---0
GURA351605:0:Tyes069735093516
HARS204773:0:Tyes6396400643
HAUR316274:2:Tyes---0
HBUT415426:0:Tyes--0629
HCHE349521:0:Tyes0123
HDUC233412:0:Tyes72302591
HHAL349124:0:Tyes2--0
HINF281310:0:Tyes748115540
HINF374930:0:Tyes9770251-
HINF71421:0:Tno637112400
HMAR272569:8:Tyes--0-
HMOD498761:0:Tyes--0406
HMUK485914:1:Tyes--0-
HNEP81032:0:Tyes--2760
HPYL357544:1:Tyes--0-
HSAL478009:4:Tyes--0-
HSOM205914:1:Tyes26006561
HSOM228400:0:Tno1680012741
HSP64091:2:Tno--0-
HWAL362976:1:Tyes--0-
IHOS453591:0:Tyes--1180
ILOI283942:0:Tyes014592
JSP290400:1:Tyes--0-
JSP375286:0:Tyes1553155201550
KPNE272620:2:Tyes013032
KRAD266940:2:Fyes---0
LACI272621:0:Tyes-774-0
LBOR355276:1:Tyes-0--
LBOR355277:1:Tno-0--
LBRE387344:2:Tyes-10320476
LCAS321967:1:Tyes-0-1443
LCHO395495:0:Tyes013054
LDEL321956:0:Tyes---0
LDEL390333:0:Tyes-0-422
LGAS324831:0:Tyes-636-0
LHEL405566:0:Tyes-718-0
LINN272626:1:Tno---0
LINT189518:1:Tyes-0--
LINT267671:1:Tno-0--
LINT363253:3:Tyes-0326440
LJOH257314:0:Tyes-619-0
LLAC272622:5:Tyes-0-1533
LLAC272623:0:Tyes---0
LMES203120:1:Tyes---0
LMON169963:0:Tno---0
LMON265669:0:Tyes---0
LPLA220668:0:Tyes---0
LPNE272624:0:Tno246141701
LPNE297245:1:Fno204138501
LPNE297246:1:Fyes240151801
LPNE400673:0:Tno5560317318
LREU557436:0:Tyes---0
LSAK314315:0:Tyes-0-1293
LSPH444177:1:Tyes-0-3920
LWEL386043:0:Tyes---0
MACE188937:0:Tyes--0-
MAEO419665:0:Tyes--0265
MAER449447:0:Tyes--24550
MAQU351348:2:Tyes3210
MBAR269797:1:Tyes-20860-
MBUR259564:0:Tyes--0-
MCAP243233:0:Tyes7547-0
MEXT419610:0:Tyes---0
MFLA265072:0:Tyes0115845
MHUN323259:0:Tyes-01691-
MJAN243232:2:Tyes--0-
MKAN190192:0:Tyes--0-
MLAB410358:0:Tyes-7700-
MLOT266835:2:Tyes--0-
MMAG342108:0:Tyes--30760
MMAR267377:0:Tyes-118050
MMAR368407:0:Tyes-01810-
MMAR394221:0:Tyes--01002
MMAR402880:1:Tyes-012677
MMAR426368:0:Tyes-127061
MMAR444158:0:Tyes-011060
MMAZ192952:0:Tyes-10990-
MPET420662:1:Tyes1139113801136
MSED399549:0:Tyes--0-
MSP266779:3:Tyes--0-
MSP400668:0:Tyes0178
MSP409:2:Tyes--1850
MSTA339860:0:Tyes--0-
MSUC221988:0:Tyes0115634113
MTHE187420:0:Tyes--0-
MTHE264732:0:Tyes---0
MTHE349307:0:Tyes-01395-
MXAN246197:0:Tyes--0264
NEUR228410:0:Tyes-023642
NEUT335283:2:Tyes-26730
NFAR247156:2:Tyes-0--
NGON242231:0:Tyes97007571481
NHAM323097:2:Tyes--0-
NMEN122586:0:Tno02449771482
NMEN122587:0:Tyes35461713140
NMEN272831:0:Tno02458681385
NMEN374833:0:Tno37564413400
NMUL323848:3:Tyes-42010
NOCE323261:1:Tyes32-0
NPHA348780:2:Tyes--0-
NSP103690:6:Tyes--21340
NSP35761:1:Tyes---0
NSP387092:0:Tyes--0-
NWIN323098:0:Tyes--0-
OANT439375:5:Tyes--0-
OCAR504832:0:Tyes--0-
OIHE221109:0:Tyes---0
OTSU357244:0:Fyes--0-
PABY272844:0:Tyes--0932
PACN267747:0:Tyes--14920
PAER178306:0:Tyes--0-
PAER208963:0:Tyes3210
PAER208964:0:Tno0123
PARC259536:0:Tyes012666
PARS340102:0:Tyes--0-
PAST100379:0:Tyes--0-
PATL342610:0:Tyes012982
PCAR338963:0:Tyes189997910
PCRY335284:1:Tyes012338
PDIS435591:0:Tyes1196-0-
PENT384676:0:Tyes0123
PFLU205922:0:Tyes3210
PFLU216595:1:Tyes3210
PFLU220664:0:Tyes3210
PFUR186497:0:Tyes--7500
PGIN242619:0:Tyes--0-
PHAL326442:1:Tyes4464450444
PHOR70601:0:Tyes--11000
PING357804:0:Tyes1583158201581
PINT246198:1:Tyes0-839-
PISL384616:0:Tyes--0-
PLUM243265:0:Fyes2516251502514
PLUT319225:0:Tyes29--0
PMAR146891:0:Tyes---0
PMAR167539:0:Tyes---0
PMAR167540:0:Tyes---0
PMAR167542:0:Tyes---0
PMAR167546:0:Tyes---0
PMAR167555:0:Tyes---0
PMAR59920:0:Tno---0
PMAR74546:0:Tyes---0
PMAR74547:0:Tyes---0
PMAR93060:0:Tyes---0
PMEN399739:0:Tyes3210
PMOB403833:0:Tyes--01
PMUL272843:1:Tyes0841426843
PNAP365044:8:Tyes1551155001547
PPEN278197:0:Tyes---0
PPRO298386:2:Tyes6263064
PPUT160488:0:Tno0123
PPUT351746:0:Tyes3210
PPUT76869:0:Tno3210
PRUM264731:0:Tyes861-0-
PSP117:0:Tyes5021-01759
PSP296591:2:Tyes434850
PSP312153:0:Tyes018813
PSP56811:2:Tyes012449
PSTU379731:0:Tyes0123
PSYR205918:0:Tyes0123
PSYR223283:2:Tyes3210
PTHE370438:0:Tyes--26130
PTOR263820:0:Tyes-0253-
RAKA293614:0:Fyes---0
RALB246199:0:Tyes-0--
RBEL336407:0:Tyes---0
RBEL391896:0:Fno---0
RCAN293613:0:Fyes--2470
RCON272944:0:Tno--8770
RDEN375451:4:Tyes--0-
RETL347834:5:Tyes--0-
REUT264198:3:Tyes2862870290
REUT381666:2:Tyes0115054
RFEL315456:2:Tyes--3530
RFER338969:1:Tyes014795
RMAS416276:1:Tyes--6450
RMET266264:2:Tyes2632640267
RPAL258594:0:Tyes--0-
RPAL316055:0:Tyes--0-
RPAL316056:0:Tyes--0-
RPAL316057:0:Tyes--0-
RPAL316058:0:Tyes--0-
RPOM246200:1:Tyes--01666
RPRO272947:0:Tyes--5330
RRIC392021:0:Fno--8530
RRIC452659:0:Tyes--8870
RRUB269796:1:Tyes--9080
RSOL267608:1:Tyes3803810384
RSPH272943:4:Tyes--0-
RSPH349101:2:Tno--0-
RSPH349102:5:Tyes--0-
RTYP257363:0:Tno--5620
RXYL266117:0:Tyes---0
SACI330779:0:Tyes--13230
SACI56780:0:Tyes110901067334
SAGA205921:0:Tno-107-0
SAGA208435:0:Tno-115-0
SAGA211110:0:Tyes-124-0
SAUR158878:1:Tno---0
SAUR158879:1:Tno---0
SAUR196620:0:Tno---0
SAUR273036:0:Tno---0
SAUR282458:0:Tno---0
SAUR282459:0:Tno---0
SAUR359786:1:Tno---0
SAUR359787:1:Tno---0
SAUR367830:3:Tno---0
SAUR418127:0:Tyes---0
SAUR426430:0:Tno---0
SAUR93061:0:Fno---0
SAUR93062:1:Tno---0
SAVE227882:1:Fyes---0
SBAL399599:3:Tyes3405
SBAL402882:1:Tno3405
SBOY300268:1:Tyes211170
SDEG203122:0:Tyes0123
SDEN318161:0:Tyes9291090
SDYS300267:1:Tyes013232
SELO269084:0:Tyes---0
SENT209261:0:Tno1281270126
SENT220341:0:Tno011272
SENT295319:0:Tno1281270126
SENT321314:2:Tno011412
SENT454169:2:Tno011522
SEPI176279:1:Tyes---0
SEPI176280:0:Tno---0
SFLE198214:0:Tyes011462
SFLE373384:0:Tno011542
SFUM335543:0:Tyes-158318660
SGLO343509:3:Tyes011642
SHAE279808:0:Tyes---0
SHAL458817:0:Tyes2140
SHIGELLA:0:Tno011422
SLAC55218:1:Fyes--0-
SLOI323850:0:Tyes2150
SMAR399550:0:Tyes--3150
SMED366394:3:Tyes--0-
SMUT210007:0:Tyes-319-0
SONE211586:1:Tyes3405
SPEA398579:0:Tno2150
SPNE1313:0:Tyes---0
SPNE170187:0:Tyes---0
SPNE171101:0:Tno---0
SPNE487213:0:Tno---0
SPNE487214:0:Tno---0
SPNE488221:0:Tno---0
SPRO399741:1:Tyes01722
SPYO160490:0:Tno---0
SPYO186103:0:Tno-0-310
SPYO193567:0:Tno-0-1196
SPYO198466:0:Tno-0-307
SPYO286636:0:Tno-0-294
SPYO293653:0:Tno-0-329
SPYO319701:0:Tyes-0-276
SPYO370551:0:Tno-0-335
SPYO370552:0:Tno-0-281
SPYO370553:0:Tno-0-331
SPYO370554:0:Tyes-0-314
SRUB309807:1:Tyes0-1090-
SSAP342451:2:Tyes---0
SSED425104:0:Tyes3405
SSOL273057:0:Tyes--0-
SSON300269:1:Tyes211330
SSP1148:0:Tyes--6270
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