CANDIDATE ID: 1093

CANDIDATE ID: 1093

NUMBER OF GENES: 4
AVERAGE SCORE:    9.9972950e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:   2.3250000e-32

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G6861 (ydgI) (b1605)
   Products of gene:
     - ARCD-MONOMER (ArcD APC transporter)

- EG12462 (adiC) (b4115)
   Products of gene:
     - YJDE-MONOMER (AdiC)
     - CPLX0-7535 (AdiC arginine:agmatine antiporter)
       Reactions:
        agmatine[cytosol] + L-arginine[periplasmic space]  ->  agmatine[periplasmic space] + L-arginine[cytosol]

- EG10753 (potE) (b0692)
   Products of gene:
     - POTE-MONOMER (putrescine/proton symporter: putrescine/ornithine antiporter)
       Reactions:
        putrescine[cytosol] + L-ornithine[periplasmic space]  ->  putrescine[periplasmic space] + L-ornithine[cytosol]
        putrescine[periplasmic space] + H+[periplasmic space]  ->  putrescine[cytosol] + H+[cytosol]

- EG10132 (cadB) (b4132)
   Products of gene:
     - CADB-MONOMER (CadB cadaverine/lysine APC exchanger)
       Reactions:
        cadaverine[periplasmic space] + H+[periplasmic space]  ->  cadaverine[cytosol] + H+[cytosol]
        cadaverine[cytosol] + L-lysine[periplasmic space]  ->  cadaverine[periplasmic space] + L-lysine[cytosol]



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ORGANISMS CONTAINING AT LEAST 3 GENES FROM THE GROUP:

Total number of orgs: 193
Effective number of orgs (counting one per cluster within 468 clusters): 111

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317584
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329534
YPES386656 ncbi Yersinia pestis Pestoides F4
YPES377628 ncbi Yersinia pestis Nepal5164
YPES360102 ncbi Yersinia pestis Antiqua4
YPES349746 ncbi Yersinia pestis Angola4
YPES214092 ncbi Yersinia pestis CO924
YPES187410 ncbi Yersinia pestis KIM 104
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80814
WPIP955 Wolbachia pipientis4
WPIP80849 Wolbachia endosymbiont of Brugia malayi4
VVUL216895 ncbi Vibrio vulnificus CMCP64
VVUL196600 ncbi Vibrio vulnificus YJ0163
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106334
VFIS312309 ncbi Vibrio fischeri ES1143
VCHO345073 ncbi Vibrio cholerae O3954
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169614
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT24
SSP94122 ncbi Shewanella sp. ANA-34
SSON300269 ncbi Shigella sonnei Ss0464
SPRO399741 ncbi Serratia proteamaculans 5684
SPEA398579 ncbi Shewanella pealeana ATCC 7003454
SONE211586 ncbi Shewanella oneidensis MR-14
SMEL266834 ncbi Sinorhizobium meliloti 10214
SMED366394 ncbi Sinorhizobium medicae WSM4194
SHIGELLA ncbi Shigella flexneri 2a str. 2457T4
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14354
SFLE373384 ncbi Shigella flexneri 5 str. 84014
SFLE198214 ncbi Shigella flexneri 2a str. 3014
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122284
SEPI176279 ncbi Staphylococcus epidermidis RP62A4
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4764
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B674
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91504
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT184
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty24
SDYS300267 ncbi Shigella dysenteriae Sd1974
SCO ncbi Streptomyces coelicolor A3(2)4
SBOY300268 ncbi Shigella boydii Sb2274
SBAL402882 ncbi Shewanella baltica OS1854
SBAL399599 ncbi Shewanella baltica OS1954
SAVE227882 ncbi Streptomyces avermitilis MA-46804
SAUR93062 ncbi Staphylococcus aureus aureus COL4
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83254
SAUR426430 ncbi Staphylococcus aureus aureus Newman4
SAUR418127 ncbi Staphylococcus aureus aureus Mu34
SAUR367830 Staphylococcus aureus aureus USA3004
SAUR359787 ncbi Staphylococcus aureus aureus JH14
SAUR359786 ncbi Staphylococcus aureus aureus JH94
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4764
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2524
SAUR273036 ncbi Staphylococcus aureus RF1224
SAUR196620 ncbi Staphylococcus aureus aureus MW24
SAUR158879 ncbi Staphylococcus aureus aureus N3154
SAUR158878 ncbi Staphylococcus aureus aureus Mu504
SALA317655 ncbi Sphingopyxis alaskensis RB22564
SAGA211110 ncbi Streptococcus agalactiae NEM3164
SAGA208435 ncbi Streptococcus agalactiae 2603V/R4
SAGA205921 ncbi Streptococcus agalactiae A9094
RTYP257363 ncbi Rickettsia typhi Wilmington4
RRIC452659 ncbi Rickettsia rickettsii Iowa4
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith4
RPRO272947 ncbi Rickettsia prowazekii Madrid E4
RMAS416276 ncbi Rickettsia massiliae MTU54
RFEL315456 ncbi Rickettsia felis URRWXCal24
RCON272944 ncbi Rickettsia conorii Malish 74
RCAN293613 ncbi Rickettsia canadensis McKiel4
RBEL336407 ncbi Rickettsia bellii RML369-C4
RAKA293614 ncbi Rickettsia akari Hartford4
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a4
PSTU379731 ncbi Pseudomonas stutzeri A15014
PSP56811 Psychrobacter sp.3
PPUT76869 ncbi Pseudomonas putida GB-14
PPUT351746 ncbi Pseudomonas putida F14
PPUT160488 ncbi Pseudomonas putida KT24404
PPRO298386 ncbi Photobacterium profundum SS94
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257453
PMUL272843 ncbi Pasteurella multocida multocida Pm704
PMEN399739 ncbi Pseudomonas mendocina ymp4
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO13
PFLU220664 ncbi Pseudomonas fluorescens Pf-54
PFLU216595 ncbi Pseudomonas fluorescens SBW254
PFLU205922 ncbi Pseudomonas fluorescens Pf0-14
PENT384676 ncbi Pseudomonas entomophila L484
PAER208964 ncbi Pseudomonas aeruginosa PAO14
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA144
PACN267747 ncbi Propionibacterium acnes KPA1712024
NSP35761 Nocardioides sp.4
NFAR247156 ncbi Nocardia farcinica IFM 101524
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124444
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-14
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H3
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E4
MMAR394221 ncbi Maricaulis maris MCS104
MLOT266835 ncbi Mesorhizobium loti MAFF3030994
LXYL281090 ncbi Leifsonia xyli xyli CTCB074
LSAK314315 ncbi Lactobacillus sakei sakei 23K4
LREU557436 ncbi Lactobacillus reuteri DSM 200164
LJOH257314 ncbi Lactobacillus johnsonii NCC 5334
LBRE387344 ncbi Lactobacillus brevis ATCC 3674
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785784
HSOM228400 ncbi Haemophilus somnus 23363
HSOM205914 ncbi Haemophilus somnus 129PT4
HINF71421 ncbi Haemophilus influenzae Rd KW203
HDUC233412 ncbi Haemophilus ducreyi 35000HP4
HCHE349521 ncbi Hahella chejuensis KCTC 23964
ESP42895 Enterobacter sp.4
EFER585054 ncbi Escherichia fergusonii ATCC 354694
ECOO157 ncbi Escherichia coli O157:H7 EDL9334
ECOL83334 Escherichia coli O157:H74
ECOL585397 ncbi Escherichia coli ED1a4
ECOL585057 ncbi Escherichia coli IAI394
ECOL585056 ncbi Escherichia coli UMN0264
ECOL585055 ncbi Escherichia coli 559894
ECOL585035 ncbi Escherichia coli S884
ECOL585034 ncbi Escherichia coli IAI14
ECOL481805 ncbi Escherichia coli ATCC 87394
ECOL469008 ncbi Escherichia coli BL21(DE3)4
ECOL439855 ncbi Escherichia coli SMS-3-54
ECOL413997 ncbi Escherichia coli B str. REL6064
ECOL409438 ncbi Escherichia coli SE114
ECOL405955 ncbi Escherichia coli APEC O14
ECOL364106 ncbi Escherichia coli UTI894
ECOL362663 ncbi Escherichia coli 5364
ECOL331111 ncbi Escherichia coli E24377A4
ECOL316407 ncbi Escherichia coli K-12 substr. W31104
ECOL199310 ncbi Escherichia coli CFT0734
DNOD246195 ncbi Dichelobacter nodosus VCS1703A3
CVIO243365 ncbi Chromobacterium violaceum ATCC 124724
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis4
CTRA471472 ncbi Chlamydia trachomatis 434/Bu4
CSP78 Caulobacter sp.4
CPNE182082 ncbi Chlamydophila pneumoniae TW-1834
CPNE138677 ncbi Chlamydophila pneumoniae J1384
CPNE115713 ncbi Chlamydophila pneumoniae CWL0294
CPNE115711 ncbi Chlamydophila pneumoniae AR394
CPER289380 ncbi Clostridium perfringens SM1014
CPER195103 ncbi Clostridium perfringens ATCC 131244
CPER195102 ncbi Clostridium perfringens 134
CMUR243161 ncbi Chlamydia muridarum Nigg4
CFEL264202 ncbi Chlamydophila felis Fe/C-564
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131293
CDIF272563 ncbi Clostridium difficile 6303
CCAV227941 ncbi Chlamydophila caviae GPIC4
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto4
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6574
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B4
CBOT498213 ncbi Clostridium botulinum B1 str. Okra4
CBOT441772 ncbi Clostridium botulinum F str. Langeland4
CBOT441771 ncbi Clostridium botulinum A str. Hall4
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193974
CBOT36826 Clostridium botulinum A4
CAULO ncbi Caulobacter crescentus CB154
CABO218497 ncbi Chlamydophila abortus S26/34
BXEN266265 ncbi Burkholderia xenovorans LB4004
BWEI315730 ncbi Bacillus weihenstephanensis KBAB44
BVIE269482 ncbi Burkholderia vietnamiensis G44
BTHU412694 ncbi Bacillus thuringiensis Al Hakam4
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-274
BTHA271848 ncbi Burkholderia thailandensis E2644
BSUB ncbi Bacillus subtilis subtilis 1683
BSP36773 Burkholderia sp.4
BPUM315750 ncbi Bacillus pumilus SAFR-0323
BPSE320373 ncbi Burkholderia pseudomallei 6684
BPSE320372 ncbi Burkholderia pseudomallei 1710b4
BPSE272560 ncbi Burkholderia pseudomallei K962434
BPET94624 Bordetella petrii4
BMAL320389 ncbi Burkholderia mallei NCTC 102474
BMAL320388 ncbi Burkholderia mallei SAVP14
BMAL243160 ncbi Burkholderia mallei ATCC 233444
BLIC279010 ncbi Bacillus licheniformis ATCC 145804
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1104
BCER572264 ncbi Bacillus cereus 03BB1024
BCER405917 Bacillus cereus W4
BCER315749 ncbi Bacillus cytotoxicus NVH 391-984
BCER288681 ncbi Bacillus cereus E33L4
BCER226900 ncbi Bacillus cereus ATCC 145794
BCEN331272 ncbi Burkholderia cenocepacia HI24243
BCEN331271 ncbi Burkholderia cenocepacia AU 10543
BANT592021 ncbi Bacillus anthracis A02484
BANT568206 ncbi Bacillus anthracis CDC 6844
BANT261594 ncbi Bacillus anthracis Ames Ancestor4
BANT260799 ncbi Bacillus anthracis Sterne4
BAMY326423 ncbi Bacillus amyloliquefaciens FZB424
BAMB398577 ncbi Burkholderia ambifaria MC40-64
BAMB339670 ncbi Burkholderia ambifaria AMMD4
ASP62977 ncbi Acinetobacter sp. ADP13
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4494
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL034
APLE416269 ncbi Actinobacillus pleuropneumoniae L204
AHYD196024 Aeromonas hydrophila dhakensis4
ACAU438753 ncbi Azorhizobium caulinodans ORS 5714
ABAU360910 ncbi Bordetella avium 197N4


Names of the homologs of the genes in the group in each of these orgs
  G6861   EG12462   EG10753   EG10132   
YPSE349747 YPSIP31758_1828YPSIP31758_2782YPSIP31758_2782YPSIP31758_2782
YPSE273123 YPTB2228YPTB1240YPTB1240YPTB1240
YPES386656 YPDSF_0838YPDSF_2495YPDSF_2495YPDSF_2495
YPES377628 YPN_1766YPN_2776YPN_2776YPN_2776
YPES360102 YPA_1654YPA_0912YPA_0912YPA_0912
YPES349746 YPANGOLA_A2298YPANGOLA_A1326YPANGOLA_A1326YPANGOLA_A1326
YPES214092 YPO2306YPO1200YPO1200YPO1200
YPES187410 Y2137Y2988Y2988Y2988
YENT393305 YE2081YE0454YE3526YE0454
WPIP955 WD_0957WD_0957WD_0957WD_0957
WPIP80849 WB_0066WB_0067WB_0066WB_0067
VVUL216895 VV2_1236VV1_2059VV2_1236VV1_2059
VVUL196600 VV2382VVA0064VV2382
VPAR223926 VPA1634VP2891VPA1634VP2891
VFIS312309 VF2058VF2058VF2058
VCHO345073 VC0395_A2851VC0395_A2657VC0395_0180VC0395_A2657
VCHO VC0433VC0280VCA1062VC0280
STYP99287 STM1477STM4294STM0700STM2558
SSP94122 SHEWANA3_3872SHEWANA3_3872SHEWANA3_3872SHEWANA3_3872
SSON300269 SSO_1555SSO_4290SSO_0643SSO_4290
SPRO399741 SPRO_2587SPRO_3768SPRO_0508SPRO_3768
SPEA398579 SPEA_2206SPEA_2206SPEA_2206SPEA_2206
SONE211586 SO_0313SO_0313SO_0313SO_0313
SMEL266834 SMA1668SMA0678SMA0678SMA0678
SMED366394 SMED_5198SMED_5194SMED_5194SMED_5194
SHIGELLA S1758YJDEPOTES4552
SHAE279808 SH0368SH0368SH0368SH0368
SFLE373384 SFV_1620SFV_4115SFV_0642SFV_4287
SFLE198214 AAN43209.1AAN45533.1AAN42242.1AAN45704.1
SEPI176280 SE_0105SE_0105SE_0105SE_0105
SEPI176279 SERP2247SERP2247SERP2247SERP2247
SENT454169 SEHA_C1645SEHA_C4640SEHA_C0821SEHA_C2821
SENT321314 SCH_1495SCH_4173SCH_0720SCH_2553
SENT295319 SPA1378SPA4112SPA2041SPA0308
SENT220341 STY1645STY4493STY0738STY2805
SENT209261 T1345T4201T2175T0298
SDYS300267 SDY_1548SDY_4098SDY_4098SDY_4098
SCO SCO6528SCO6528SCO6528SCO6528
SBOY300268 SBO_1531SBO_4142SBO_4142SBO_4142
SBAL402882 SHEW185_3099SHEW185_4054SHEW185_4054SHEW185_4054
SBAL399599 SBAL195_3242SBAL195_4172SBAL195_4172SBAL195_4172
SAVE227882 SAV794SAV794SAV794SAV794
SAUR93062 SACOL2655SACOL2655SACOL2655SACOL2655
SAUR93061 SAOUHSC_02967SAOUHSC_02967SAOUHSC_02967SAOUHSC_02967
SAUR426430 NWMN_2532NWMN_2532NWMN_2532NWMN_2532
SAUR418127 SAHV_2617SAHV_2617SAHV_2617SAHV_2617
SAUR367830 SAUSA300_0064SAUSA300_2568SAUSA300_0064SAUSA300_0064
SAUR359787 SAURJH1_2713SAURJH1_2713SAURJH1_2713SAURJH1_2713
SAUR359786 SAURJH9_2657SAURJH9_2657SAURJH9_2657SAURJH9_2657
SAUR282459 SAS2519SAS2519SAS2519SAS2519
SAUR282458 SAR2712SAR2712SAR2712SAR2712
SAUR273036 SAB2508CSAB2508CSAB2508CSAB2508C
SAUR196620 MW2554MW2554MW2554MW2554
SAUR158879 SA2426SA2426SA2426SA2426
SAUR158878 SAV2633SAV2633SAV2633SAV2633
SALA317655 SALA_3167SALA_3167SALA_3167SALA_3167
SAGA211110 GBS2125GBS2125GBS2125GBS2125
SAGA208435 SAG_2166SAG_2166SAG_2166SAG_2166
SAGA205921 SAK_2124SAK_2124SAK_2124SAK_2124
RTYP257363 RT0470RT0470RT0470RT0470
RRIC452659 RRIOWA_0864RRIOWA_0864RRIOWA_0864RRIOWA_0864
RRIC392021 A1G_04110A1G_04110A1G_04110A1G_04110
RPRO272947 RP483RP483RP483RP483
RMAS416276 RMA_0820RMA_0820RMA_0820RMA_0820
RFEL315456 RF_0841RF_0841RF_0841RF_0841
RCON272944 RC0726RC0726RC0726RC0726
RCAN293613 A1E_02350A1E_02350A1E_02350A1E_02350
RBEL336407 RBE_0663RBE_0663RBE_0663RBE_0663
RAKA293614 A1C_03920A1C_03920A1C_03920A1C_03920
PSYR205918 PSYR_2683PSYR_2683PSYR_2683PSYR_2683
PSTU379731 PST_3977PST_0677PST_0677PST_0677
PSP56811 PSYCPRWF_1498PSYCPRWF_1498PSYCPRWF_1498
PPUT76869 PPUTGB1_1001PPUTGB1_1001PPUTGB1_1002PPUTGB1_1001
PPUT351746 PPUT_1039PPUT_2445PPUT_2445PPUT_2445
PPUT160488 PP_1002PP_1002PP_1003PP_1002
PPRO298386 PBPRA1577PBPRA1577PBPRA1577PBPRA1577
PPEN278197 PEPE_1627PEPE_1627PEPE_1628
PMUL272843 PM0162PM0807PM0807PM0807
PMEN399739 PMEN_1109PMEN_3254PMEN_3254PMEN_3254
PLUM243265 PLU2162PLU2162PLU2162
PFLU220664 PFL_4634PFL_4634PFL_4633PFL_4633
PFLU216595 PFLU4890PFLU4890PFLU4890PFLU4890
PFLU205922 PFL_4385PFL_4385PFL_4384PFL_4384
PENT384676 PSEEN4427PSEEN4427PSEEN4426PSEEN4426
PAER208964 PA5170PA1819PA1819PA1819
PAER208963 PA14_68300PA14_41010PA14_41010PA14_41010
PACN267747 PPA0582PPA0582PPA0582PPA0582
NSP35761 NOCA_2423NOCA_2423NOCA_2423NOCA_2423
NFAR247156 NFA32790NFA32790NFA32790NFA32790
NARO279238 SARO_1674SARO_1674SARO_1674SARO_1674
MVAN350058 MVAN_1392MVAN_1392MVAN_1392MVAN_1392
MTHE187420 MTH546MTH546MTH546
MSUC221988 MS0552MS0552MS0552MS0552
MMAR394221 MMAR10_0147MMAR10_0147MMAR10_0147MMAR10_0147
MLOT266835 MLR6736MLR6736MLR6736MLL6735
LXYL281090 LXX24640LXX24640LXX24640LXX24640
LSAK314315 LSA0374LSA0374LSA0374LSA0374
LREU557436 LREU_0447LREU_0448LREU_0448LREU_0447
LJOH257314 LJ_0731LJ_0731LJ_0731LJ_0731
LBRE387344 LVIS_1755LVIS_1755LVIS_1755LVIS_2025
KPNE272620 GKPORF_B0518GKPORF_B4904GKPORF_B4904GKPORF_B4904
HSOM228400 HSM_0437HSM_0437HSM_0437
HSOM205914 HS_1006HS_1006HS_1574HS_1006
HINF71421 HI_0590HI_0590HI_0590
HDUC233412 HD_0568HD_0568HD_0568HD_0568
HCHE349521 HCH_05491HCH_05491HCH_05491HCH_05491
ESP42895 ENT638_1847ENT638_1204ENT638_1204ENT638_1204
EFER585054 EFER_1432EFER_1901EFER_2419EFER_1901
ECOO157 Z2605YJDEPOTECADB
ECOL83334 ECS2311ECS5097ECS0720ECS5114
ECOL585397 ECED1_1804ECED1_4849ECED1_0671ECED1_4868
ECOL585057 ECIAI39_1453ECIAI39_4539ECIAI39_0650ECIAI39_4561
ECOL585056 ECUMN_1893ECUMN_4647ECUMN_4647ECUMN_4666
ECOL585055 EC55989_1770EC55989_4606EC55989_0676EC55989_4625
ECOL585035 ECS88_1650ECS88_4617ECS88_0726ECS88_4636
ECOL585034 ECIAI1_1655ECIAI1_4345ECIAI1_0668ECIAI1_4365
ECOL481805 ECOLC_2025ECOLC_3912ECOLC_2964ECOLC_3895
ECOL469008 ECBD_2041ECBD_3916ECBD_2969ECBD_3898
ECOL439855 ECSMS35_1594ECSMS35_4580ECSMS35_0714ECSMS35_4601
ECOL413997 ECB_01574ECB_03986ECB_00648ECB_04003
ECOL409438 ECSE_1726ECSE_4413ECSE_0751ECSE_4432
ECOL405955 APECO1_688APECO1_2336APECO1_1375APECO1_2321
ECOL364106 UTI89_C1793UTI89_C4709UTI89_C0694UTI89_C4729
ECOL362663 ECP_1549ECP_4358ECP_0710ECP_4376
ECOL331111 ECE24377A_1813ECE24377A_4669ECE24377A_0717ECE24377A_4687
ECOL316407 ECK1600:JW1597:B1605ECK4108:JW4076:B4115ECK0680:JW0679:B0692ECK4126:JW4093:B4132
ECOL199310 C1997C5120C0776C5141
DNOD246195 DNO_0015DNO_0015DNO_0015
CVIO243365 CV_3783CV_3432CV_3432CV_3432
CTRA471473 CTLON_0626CTLON_0626CTLON_0626CTLON_0626
CTRA471472 CTL0628CTL0628CTL0628CTL0628
CSP78 CAUL_3940CAUL_3940CAUL_3940CAUL_3940
CPNE182082 CPB1071CPB1071CPB1071CPB1071
CPNE138677 CPJ1031CPJ1031CPJ1031CPJ1031
CPNE115713 CPN1031CPN1031CPN1031CPN1031
CPNE115711 CP_0821CP_0821CP_0821CP_0821
CPER289380 CPR_0159CPR_0079CPR_0079CPR_0079
CPER195103 CPF_0163CPF_0163CPF_0163CPF_0163
CPER195102 CPE0170CPE0061CPE0061CPE0061
CMUR243161 TC_0653TC_0653TC_0653TC_0653
CFEL264202 CF0285CF0285CF0285CF0285
CDIP257309 DIP0914DIP0914DIP0914
CDIF272563 CD1189CD0165CD0165
CCAV227941 CCA_00731CCA_00731CCA_00731CCA_00731
CBOT536232 CLM_1829CLM_0629CLM_0630CLM_0629
CBOT515621 CLJ_B1695CLJ_B0604CLJ_B0605CLJ_B0604
CBOT508765 CLL_A2315CLL_A2315CLL_A2315CLL_A2315
CBOT498213 CLD_2964CLD_0221CLD_0220CLD_0221
CBOT441772 CLI_1669CLI_0607CLI_0608CLI_0607
CBOT441771 CLC_1618CLC_0452CLC_0453CLC_0452
CBOT441770 CLB_1608CLB_0568CLB_0569CLB_0568
CBOT36826 CBO1588CBO0528CBO0529CBO0528
CAULO CC3126CC3126CC3126CC3126
CABO218497 CAB698CAB698CAB698CAB698
BXEN266265 BXE_C0744BXE_C0744BXE_C0744BXE_C0744
BWEI315730 BCERKBAB4_2101BCERKBAB4_2101BCERKBAB4_2101BCERKBAB4_2101
BVIE269482 BCEP1808_5439BCEP1808_5439BCEP1808_5439BCEP1808_5439
BTHU412694 BALH_0365BALH_2044BALH_0365BALH_2044
BTHU281309 BT9727_0343BT9727_2065BT9727_0343BT9727_0343
BTHA271848 BTH_I2383BTH_I2383BTH_I2383BTH_I2383
BSUB BSU33330BSU33330BSU33330
BSP36773 BCEP18194_B0780BCEP18194_B0780BCEP18194_B0780BCEP18194_B0780
BPUM315750 BPUM_2995BPUM_2995BPUM_2995
BPSE320373 BURPS668_1969BURPS668_A1571BURPS668_1969BURPS668_1969
BPSE320372 BURPS1710B_A2297BURPS1710B_B0085BURPS1710B_A2297BURPS1710B_A2297
BPSE272560 BPSL1742BPSS1112BPSL1742BPSL1742
BPET94624 BPET2426BPET2426BPET2426BPET2426
BMAL320389 BMA10247_0916BMA10247_0916BMA10247_0916BMA10247_0916
BMAL320388 BMASAVP1_A1584BMASAVP1_A1584BMASAVP1_A1584BMASAVP1_A1584
BMAL243160 BMA_1144BMA_1144BMA_1144BMA_1144
BLIC279010 BL01915BL01915BL01915BL01915
BJAP224911 BLR7323BLL7311BLL7311BLL7311
BCER572264 BCA_2363BCA_2363BCA_2363BCA_2363
BCER405917 BCE_0474BCE_2315BCE_0474BCE_0697
BCER315749 BCER98_0350BCER98_1671BCER98_0350BCER98_0537
BCER288681 BCE33L2061BCE33L2061BCE33L2061BCE33L2061
BCER226900 BC_0408BC_0408BC_0408BC_0629
BCEN331272 BCEN2424_4011BCEN2424_4011BCEN2424_4011
BCEN331271 BCEN_4355BCEN_4355BCEN_4355
BANT592021 BAA_2346BAA_2346BAA_2346BAA_2346
BANT568206 BAMEG_2312BAMEG_2312BAMEG_2312BAMEG_2312
BANT261594 GBAA2281GBAA2281GBAA2281GBAA2281
BANT260799 BAS2127BAS2127BAS2127BAS2127
BAMY326423 RBAM_030450RBAM_030450RBAM_030450RBAM_030450
BAMB398577 BAMMC406_4536BAMMC406_4860BAMMC406_4860BAMMC406_4860
BAMB339670 BAMB_4344BAMB_4344BAMB_4344BAMB_4344
ASP62977 ACIAD1417ACIAD1417ACIAD1417
ASAL382245 ASA_1526ASA_3142ASA_3142ASA_3142
APLE434271 APJL_1098APJL_1099APJL_1098APJL_1098
APLE416269 APL_1082APL_1083APL_1082APL_1082
AHYD196024 AHA_2806AHA_1191AHA_1191AHA_1191
ACAU438753 AZC_0982AZC_0982AZC_0982AZC_0982
ABAU360910 BAV2688BAV2686BAV2686BAV2686


Organism features enriched in list (features available for 180 out of the 193 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Clusters 9.946e-71517
Arrangment:Pairs 4.438e-859112
Disease:Anthrax 0.008878244
Disease:Botulism 0.002698755
Disease:Bubonic_plague 0.000817166
Disease:Dysentery 0.000817166
Disease:Gastroenteritis 0.00065471013
Disease:Pharyngitis 0.000074088
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 1.957e-61111
Disease:bronchitis_and_pneumonitis 0.000074088
Endospores:No 0.000410148211
Endospores:Yes 0.00026442853
Genome_Size_Range5:0-2 0.000015828155
Genome_Size_Range5:2-4 0.000053141197
Genome_Size_Range5:4-6 3.187e-783184
Genome_Size_Range5:6-10 0.00001532847
Genome_Size_Range9:0-1 0.0028085227
Genome_Size_Range9:1-2 0.001027326128
Genome_Size_Range9:3-4 0.00143981377
Genome_Size_Range9:4-5 0.00454314096
Genome_Size_Range9:5-6 0.00005884388
Genome_Size_Range9:6-8 0.00006732338
Gram_Stain:Gram_Neg 0.0009550119333
Habitat:Aquatic 4.610e-61191
Habitat:Host-associated 0.003286377206
Habitat:Multiple 0.000649971178
Habitat:Specialized 3.639e-7253
Optimal_temp.:30-37 0.00003821418
Optimal_temp.:37 0.000220748106
Oxygen_Req:Aerobic 0.007669446185
Oxygen_Req:Anaerobic 0.000071216102
Oxygen_Req:Facultative 1.597e-1096201
Pathogenic_in:Animal 1.160e-63866
Pathogenic_in:Human 4.587e-19114213
Pathogenic_in:No 2.441e-1430226
Shape:Rod 1.846e-13146347
Shape:Sphere 0.0069702119
Temp._range:Mesophilic 2.194e-7167473
Temp._range:Thermophilic 0.0000258135



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 420
Effective number of orgs (counting one per cluster within 468 clusters): 351

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM40
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A0
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110180
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103310
XFAS405440 ncbi Xylella fastidiosa M120
XFAS183190 ncbi Xylella fastidiosa Temecula10
XFAS160492 ncbi Xylella fastidiosa 9a5c0
XCAM487884 Xanthomonas campestris pv. paulliniae0
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-100
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80040
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339130
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3060
XAUT78245 ncbi Xanthobacter autotrophicus Py20
WSUC273121 ncbi Wolinella succinogenes DSM 17400
VEIS391735 ncbi Verminephrobacter eiseniae EF01-20
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTUR377629 ncbi Teredinibacter turnerae T79010
TTHE300852 ncbi Thermus thermophilus HB80
TTHE262724 ncbi Thermus thermophilus HB270
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB40
TSP28240 Thermotoga sp.0
TSP1755 Thermoanaerobacter sp.0
TROS309801 ncbi Thermomicrobium roseum DSM 51590
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332230
TPET390874 ncbi Thermotoga petrophila RKU-10
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TMAR243274 ncbi Thermotoga maritima MSB80
TLET416591 ncbi Thermotoga lettingae TMO0
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TFUS269800 ncbi Thermobifida fusca YX0
TERY203124 ncbi Trichodesmium erythraeum IMS1010
TELO197221 ncbi Thermosynechococcus elongatus BP-10
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12510
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252590
TCRU317025 ncbi Thiomicrospira crunogena XCL-20
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen0
STRO369723 ncbi Salinispora tropica CNB-4400
STOK273063 ncbi Sulfolobus tokodaii 70
STHE322159 ncbi Streptococcus thermophilus LMD-90
STHE299768 ncbi Streptococcus thermophilus CNRZ10660
STHE292459 ncbi Symbiobacterium thermophilum IAM 148630
STHE264199 ncbi Streptococcus thermophilus LMG 183110
SSUI391296 ncbi Streptococcus suis 98HAH330
SSUI391295 ncbi Streptococcus suis 05ZYH330
SSP84588 ncbi Synechococcus sp. WH 81020
SSP64471 ncbi Synechococcus sp. CC93110
SSP644076 Silicibacter sp. TrichCH4B0
SSP387093 ncbi Sulfurovum sp. NBC37-10
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)0
SSP321327 ncbi Synechococcus sp. JA-3-3Ab0
SSP292414 ncbi Ruegeria sp. TM10400
SSP1148 ncbi Synechocystis sp. PCC 68030
SSP1131 Synechococcus sp. CC96050
SSOL273057 ncbi Sulfolobus solfataricus P20
SSED425104 ncbi Shewanella sediminis HAW-EB30
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153050
SRUB309807 ncbi Salinibacter ruber DSM 138550
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370552 ncbi Streptococcus pyogenes MGAS102700
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103940
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SPNE488221 ncbi Streptococcus pneumoniae 705850
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-60
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-140
SPNE171101 ncbi Streptococcus pneumoniae R60
SPNE170187 ncbi Streptococcus pneumoniae G540
SPNE1313 Streptococcus pneumoniae0
SMUT210007 ncbi Streptococcus mutans UA1590
SMAR399550 ncbi Staphylothermus marinus F10
SLOI323850 ncbi Shewanella loihica PV-40
SLAC55218 Ruegeria lacuscaerulensis0
SHAL458817 ncbi Shewanella halifaxensis HAW-EB40
SGOR29390 Streptococcus gordonii Challis0
SGLO343509 ncbi Sodalis glossinidius morsitans0
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB0
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23380
SELO269084 ncbi Synechococcus elongatus PCC 63010
SDEN318161 ncbi Shewanella denitrificans OS2171
SDEG203122 ncbi Saccharophagus degradans 2-400
SARE391037 ncbi Salinispora arenicola CNS-2050
SACI56780 ncbi Syntrophus aciditrophicus SB0
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99410
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170250
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170290
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.10
RSP357808 ncbi Roseiflexus sp. RS-10
RSP101510 ncbi Rhodococcus jostii RHA10
RSOL267608 ncbi Ralstonia solanacearum GMI10000
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332090
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111700
RPOM246200 ncbi Ruegeria pomeroyi DSS-30
RPAL316058 ncbi Rhodopseudomonas palustris HaA20
RPAL316057 ncbi Rhodopseudomonas palustris BisB50
RPAL316056 ncbi Rhodopseudomonas palustris BisB180
RPAL316055 ncbi Rhodopseudomonas palustris BisA530
RPAL258594 ncbi Rhodopseudomonas palustris CGA0090
RMET266264 ncbi Ralstonia metallidurans CH340
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38410
RFER338969 ncbi Rhodoferax ferrireducens T1180
REUT381666 ncbi Ralstonia eutropha H160
REUT264198 ncbi Ralstonia eutropha JMP1340
RETL347834 ncbi Rhizobium etli CFN 420
RDEN375451 ncbi Roseobacter denitrificans OCh 1141
RCAS383372 ncbi Roseiflexus castenholzii DSM 139410
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RALB246199 Ruminococcus albus 80
PTOR263820 ncbi Picrophilus torridus DSM 97900
PTHE370438 ncbi Pelotomaculum thermopropionicum SI0
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30000
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-10
PSP296591 ncbi Polaromonas sp. JS6660
PSP117 Pirellula sp.0
PRUM264731 ncbi Prevotella ruminicola 230
PNAP365044 ncbi Polaromonas naphthalenivorans CJ20
PMOB403833 ncbi Petrotoga mobilis SJ950
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74547 ncbi Prochlorococcus marinus MIT 93130
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR59920 ncbi Prochlorococcus marinus NATL2A0
PMAR167555 ncbi Prochlorococcus marinus NATL1A0
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13750
PMAR146891 ncbi Prochlorococcus marinus AS96010
PLUT319225 ncbi Chlorobium luteolum DSM 2730
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 170
PING357804 ncbi Psychromonas ingrahamii 370
PHOR70601 ncbi Pyrococcus horikoshii OT30
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1250
PGIN242619 ncbi Porphyromonas gingivalis W830
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PDIS435591 ncbi Parabacteroides distasonis ATCC 85030
PCRY335284 ncbi Psychrobacter cryohalolentis K50
PCAR338963 ncbi Pelobacter carbinolicus DSM 23800
PATL342610 ncbi Pseudoalteromonas atlantica T6c0
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PARC259536 ncbi Psychrobacter arcticus 273-40
PAER178306 ncbi Pyrobaculum aerophilum IM20
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
OIHE221109 ncbi Oceanobacillus iheyensis HTE8310
OCAR504832 ncbi Oligotropha carboxidovorans OM50
OANT439375 ncbi Ochrobactrum anthropi ATCC 491880
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2550
NSP387092 ncbi Nitratiruptor sp. SB155-20
NSP103690 ncbi Nostoc sp. PCC 71200
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
NOCE323261 ncbi Nitrosococcus oceani ATCC 197070
NMUL323848 ncbi Nitrosospira multiformis ATCC 251960
NMEN374833 ncbi Neisseria meningitidis 0534420
NMEN272831 ncbi Neisseria meningitidis FAM180
NMEN122587 ncbi Neisseria meningitidis Z24910
NMEN122586 ncbi Neisseria meningitidis MC580
NHAM323097 ncbi Nitrobacter hamburgensis X140
NGON242231 ncbi Neisseria gonorrhoeae FA 10900
NEUT335283 ncbi Nitrosomonas eutropha C910
NEUR228410 ncbi Nitrosomonas europaea ATCC 197180
MXAN246197 ncbi Myxococcus xanthus DK 16220
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra0
MTUB336982 ncbi Mycobacterium tuberculosis F110
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE264732 ncbi Moorella thermoacetica ATCC 390730
MTBRV ncbi Mycobacterium tuberculosis H37Rv0
MTBCDC ncbi Mycobacterium tuberculosis CDC15510
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSP409 Methylobacterium sp.0
MSP400668 ncbi Marinomonas sp. MWYL10
MSP266779 ncbi Chelativorans sp. BNC10
MSP189918 ncbi Mycobacterium sp. KMS0
MSP164757 ncbi Mycobacterium sp. JLS0
MSP164756 ncbi Mycobacterium sp. MCS0
MSME246196 ncbi Mycobacterium smegmatis MC2 1551
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPET420662 ncbi Methylibium petroleiphilum PM10
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MMAG342108 ncbi Magnetospirillum magneticum AMB-10
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK0
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MFLA265072 ncbi Methylobacillus flagellatus KT0
MEXT419610 ncbi Methylobacterium extorquens PA10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MCAP243233 ncbi Methylococcus capsulatus Bath0
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P20
MBOV233413 ncbi Mycobacterium bovis AF2122/970
MBAR269797 ncbi Methanosarcina barkeri Fusaro1
MAVI243243 ncbi Mycobacterium avium 1040
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAQU351348 ncbi Marinobacter aquaeolei VT80
MAER449447 ncbi Microcystis aeruginosa NIES-8430
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
MABS561007 ncbi Mycobacterium abscessus ATCC 199770
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53340
LSPH444177 ncbi Lysinibacillus sphaericus C3-410
LPNE400673 ncbi Legionella pneumophila Corby0
LPNE297246 ncbi Legionella pneumophila Paris0
LPNE297245 ncbi Legionella pneumophila Lens0
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 10
LPLA220668 ncbi Lactobacillus plantarum WCFS10
LMON265669 ncbi Listeria monocytogenes 4b F23650
LMON169963 ncbi Listeria monocytogenes EGD-e0
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82930
LLAC272623 ncbi Lactococcus lactis lactis Il14031
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-000
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1300
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566010
LINN272626 ncbi Listeria innocua Clip112620
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LCHO395495 ncbi Leptothrix cholodnii SP-60
LCAS321967 ncbi Lactobacillus casei ATCC 3340
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1970
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5500
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)0
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)0
LACI272621 ncbi Lactobacillus acidophilus NCFM0
KRAD266940 ncbi Kineococcus radiotolerans SRS302160
JSP375286 ncbi Janthinobacterium sp. Marseille0
JSP290400 ncbi Jannaschia sp. CCS10
ILOI283942 ncbi Idiomarina loihiensis L2TR0
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSAL478009 ncbi Halobacterium salinarum R10
HPYL85963 ncbi Helicobacter pylori J990
HPYL357544 ncbi Helicobacter pylori HPAG10
HPY ncbi Helicobacter pylori 266950
HNEP81032 Hyphomonas neptunium0
HMUK485914 ncbi Halomicrobium mukohataei DSM 122861
HMOD498761 ncbi Heliobacterium modesticaldum Ice10
HMAR272569 ncbi Haloarcula marismortui ATCC 430491
HINF374930 ncbi Haemophilus influenzae PittEE0
HINF281310 ncbi Haemophilus influenzae 86-028NP0
HHEP235279 ncbi Helicobacter hepaticus ATCC 514490
HHAL349124 ncbi Halorhodospira halophila SL10
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237790
HARS204773 ncbi Herminiimonas arsenicoxydans0
HACI382638 ncbi Helicobacter acinonychis Sheeba0
GVIO251221 ncbi Gloeobacter violaceus PCC 74210
GURA351605 ncbi Geobacter uraniireducens Rf40
GSUL243231 ncbi Geobacter sulfurreducens PCA0
GOXY290633 ncbi Gluconobacter oxydans 621H0
GMET269799 ncbi Geobacter metallireducens GS-150
GFOR411154 ncbi Gramella forsetii KT08030
GBET391165 ncbi Granulibacter bethesdensis CGDNIH10
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-000
FTUL418136 ncbi Francisella tularensis tularensis WY96-34180
FTUL401614 ncbi Francisella novicida U1120
FTUL393115 ncbi Francisella tularensis tularensis FSC1980
FTUL393011 ncbi Francisella tularensis holarctica OSU180
FTUL351581 Francisella tularensis holarctica FSC2000
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S850
FSP1855 Frankia sp. EAN1pec0
FSP106370 ncbi Frankia sp. CcI30
FRANT ncbi Francisella tularensis tularensis SCHU S40
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250170
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255860
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B10
FMAG334413 ncbi Finegoldia magna ATCC 293280
FJOH376686 ncbi Flavobacterium johnsoniae UW1010
FALN326424 ncbi Frankia alni ACN14a0
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ELIT314225 ncbi Erythrobacter litoralis HTCC25940
EFAE226185 ncbi Enterococcus faecalis V5830
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10430
ECAN269484 ncbi Ehrlichia canis Jake0
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough0
DSP255470 ncbi Dehalococcoides sp. CBDB10
DSP216389 ncbi Dehalococcoides sp. BAV10
DSHI398580 ncbi Dinoroseobacter shibae DFL 120
DRED349161 ncbi Desulfotomaculum reducens MI-10
DRAD243230 ncbi Deinococcus radiodurans R10
DPSY177439 ncbi Desulfotalea psychrophila LSv540
DOLE96561 ncbi Desulfococcus oleovorans Hxd30
DHAF138119 ncbi Desulfitobacterium hafniense Y510
DGEO319795 ncbi Deinococcus geothermalis DSM 113000
DETH243164 ncbi Dehalococcoides ethenogenes 1950
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G200
DARO159087 ncbi Dechloromonas aromatica RCB0
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA0
CTET212717 ncbi Clostridium tetani E880
CTEP194439 ncbi Chlorobium tepidum TLS0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CSP501479 Citreicella sp. SE450
CSAL290398 ncbi Chromohalobacter salexigens DSM 30430
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)0
CPSY167879 ncbi Colwellia psychrerythraea 34H0
CPHY357809 ncbi Clostridium phytofermentans ISDg0
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10620
CNOV386415 ncbi Clostridium novyi NT1
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3821
CMIC31964 ncbi Clavibacter michiganensis sepedonicus1
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CKLU431943 ncbi Clostridium kluyveri DSM 5550
CJEJ407148 ncbi Campylobacter jejuni jejuni 811160
CJEJ360109 ncbi Campylobacter jejuni doylei 269.970
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1760
CJEJ195099 ncbi Campylobacter jejuni RM12210
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111680
CJAP155077 Cellvibrio japonicus0
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29010
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334060
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3810
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130321
CFET360106 ncbi Campylobacter fetus fetus 82-400
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C0
CCUR360105 ncbi Campylobacter curvus 525.920
CCON360104 ncbi Campylobacter concisus 138260
CCHL340177 ncbi Chlorobium chlorochromatii CaD30
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1110
CBUR360115 ncbi Coxiella burnetii RSA 3310
CBUR227377 ncbi Coxiella burnetii RSA 4930
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN0
CBLO203907 ncbi Candidatus Blochmannia floridanus0
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80521
CACE272562 ncbi Clostridium acetobutylicum ATCC 8240
BTUR314724 ncbi Borrelia turicatae 91E1350
BTRI382640 ncbi Bartonella tribocorum CIP 1054760
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54820
BSUI470137 ncbi Brucella suis ATCC 234450
BSUI204722 ncbi Brucella suis 13300
BSP376 Bradyrhizobium sp.0
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)0
BQUI283165 ncbi Bartonella quintana Toulouse0
BPER257313 ncbi Bordetella pertussis Tohama I0
BPAR257311 ncbi Bordetella parapertussis 128220
BOVI236 Brucella ovis0
BMEL359391 ncbi Brucella melitensis biovar Abortus 23080
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M0
BLON206672 ncbi Bifidobacterium longum NCC27050
BHER314723 ncbi Borrelia hermsii DAH0
BHEN283166 ncbi Bartonella henselae Houston-10
BHAL272558 ncbi Bacillus halodurans C-1250
BGAR290434 ncbi Borrelia garinii PBi0
BFRA295405 ncbi Bacteroides fragilis YCH460
BFRA272559 ncbi Bacteroides fragilis NCTC 93430
BCLA66692 ncbi Bacillus clausii KSM-K160
BCIC186490 Candidatus Baumannia cicadellinicola0
BCAN483179 ncbi Brucella canis ATCC 233650
BBUR224326 ncbi Borrelia burgdorferi B310
BBRO257310 ncbi Bordetella bronchiseptica RB500
BBAC360095 ncbi Bartonella bacilliformis KC5830
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1000
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)0
BAFZ390236 ncbi Borrelia afzelii PKo0
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9410
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AVAR240292 ncbi Anabaena variabilis ATCC 294130
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP76114 ncbi Aromatoleum aromaticum EbN10
ASP62928 ncbi Azoarcus sp. BH720
ASP232721 ncbi Acidovorax sp. JS420
ASP1667 Arthrobacter sp.0
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K10
AORE350688 ncbi Alkaliphilus oremlandii OhILAs0
ANAE240017 Actinomyces oris MG10
AMET293826 ncbi Alkaliphilus metalliredigens QYMF0
AMAR329726 ncbi Acaryochloris marina MBIC110170
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232700
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-10
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C0
ACRY349163 ncbi Acidiphilium cryptum JF-50
ACEL351607 ncbi Acidothermus cellulolyticus 11B0
ABUT367737 ncbi Arcobacter butzleri RM40180
ABOR393595 ncbi Alcanivorax borkumensis SK20
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3450
AAVE397945 ncbi Acidovorax citrulli AAC00-10
AAUR290340 ncbi Arthrobacter aurescens TC10
AAEO224324 ncbi Aquifex aeolicus VF50


Names of the homologs of the genes in the group in each of these orgs
  G6861   EG12462   EG10753   EG10132   
ZMOB264203
XORY360094
XORY342109
XORY291331
XFAS405440
XFAS183190
XFAS160492
XCAM487884
XCAM316273
XCAM314565
XCAM190485
XAXO190486
XAUT78245
WSUC273121
VEIS391735
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496
TWHI203267
TVOL273116
TTUR377629
TTHE300852
TTHE262724
TTEN273068
TSP28240
TSP1755
TROS309801
TPSE340099
TPET390874
TPAL243276
TMAR243274
TLET416591
TKOD69014
TFUS269800
TERY203124
TELO197221
TDEN326298
TDEN292415
TCRU317025
TACI273075
SWOL335541
STRO369723
STOK273063
STHE322159
STHE299768
STHE292459
STHE264199
SSUI391296
SSUI391295
SSP84588
SSP64471
SSP644076
SSP387093
SSP321332
SSP321327
SSP292414
SSP1148
SSP1131
SSOL273057
SSED425104
SSAP342451
SRUB309807
SPYO370554
SPYO370553
SPYO370552
SPYO370551
SPYO319701
SPYO293653
SPYO286636
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SPNE488221
SPNE487214
SPNE487213
SPNE171101
SPNE170187
SPNE1313
SMUT210007
SMAR399550
SLOI323850
SLAC55218
SHAL458817
SGOR29390
SGLO343509
SFUM335543
SERY405948
SELO269084
SDEN318161 SDEN_3500
SDEG203122
SARE391037
SACI56780
SACI330779
RXYL266117
RSPH349102
RSPH349101
RSPH272943
RSP357808
RSP101510
RSOL267608
RSAL288705
RRUB269796
RPOM246200
RPAL316058
RPAL316057
RPAL316056
RPAL316055
RPAL258594
RMET266264
RLEG216596
RFER338969
REUT381666
REUT264198
RETL347834
RDEN375451 RD1_0757
RCAS383372
RBEL391896
RALB246199
PTOR263820
PTHE370438
PSYR223283
PSP312153
PSP296591
PSP117
PRUM264731
PNAP365044
PMOB403833
PMAR93060
PMAR74547
PMAR74546
PMAR59920
PMAR167555
PMAR167546
PMAR167542
PMAR167540
PMAR167539
PMAR146891
PLUT319225
PISL384616
PINT246198
PING357804
PHOR70601
PHAL326442
PGIN242619
PFUR186497
PDIS435591
PCRY335284
PCAR338963
PATL342610
PAST100379
PARS340102
PARC259536
PAER178306
PABY272844
OTSU357244
OIHE221109
OCAR504832
OANT439375
NWIN323098
NSP387092
NSP103690
NSEN222891
NPHA348780
NOCE323261
NMUL323848
NMEN374833
NMEN272831
NMEN122587
NMEN122586
NHAM323097
NGON242231
NEUT335283
NEUR228410
MXAN246197
MTUB419947
MTUB336982
MTHE349307
MTHE264732
MTBRV
MTBCDC
MSYN262723
MSTA339860
MSP409
MSP400668
MSP266779
MSP189918
MSP164757
MSP164756
MSME246196 MSMEG_1408
MSED399549
MPUL272635
MPNE272634
MPET420662
MPEN272633
MMYC272632
MMOB267748
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR368407
MMAR267377
MMAG342108
MLEP272631
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGIL350054
MGEN243273
MFLO265311
MFLA265072
MEXT419610
MCAP340047
MCAP243233
MBUR259564
MBOV410289
MBOV233413
MBAR269797 MBAR_A2599
MAVI243243
MART243272
MAQU351348
MAER449447
MAEO419665
MACE188937
MABS561007
LWEL386043
LSPH444177
LPNE400673
LPNE297246
LPNE297245
LPNE272624
LPLA220668
LMON265669
LMON169963
LMES203120
LLAC272623 L0111
LINT363253
LINT267671
LINT189518
LINN272626
LHEL405566
LGAS324831
LDEL390333
LCHO395495
LCAS321967
LBOR355277
LBOR355276
LBIF456481
LBIF355278
LACI272621
KRAD266940
JSP375286
JSP290400
ILOI283942
IHOS453591
HWAL362976
HSP64091
HSAL478009
HPYL85963
HPYL357544
HPY
HNEP81032
HMUK485914 HMUK_0746
HMOD498761
HMAR272569 RRNAC1651
HINF374930
HINF281310
HHEP235279
HHAL349124
HBUT415426
HAUR316274
HARS204773
HACI382638
GVIO251221
GURA351605
GSUL243231
GOXY290633
GMET269799
GFOR411154
GBET391165
FTUL458234
FTUL418136
FTUL401614
FTUL393115
FTUL393011
FTUL351581
FSUC59374
FSP1855
FSP106370
FRANT
FPHI484022
FNUC190304
FNOD381764
FMAG334413
FJOH376686
FALN326424
ERUM302409
ERUM254945
ELIT314225
EFAE226185
ECHA205920
ECAR218491
ECAN269484
DVUL882
DSP255470
DSP216389
DSHI398580
DRED349161
DRAD243230
DPSY177439
DOLE96561
DHAF138119
DGEO319795
DETH243164
DDES207559
DARO159087
CVES412965
CTET212717
CTEP194439
CSUL444179
CSP501479
CSAL290398
CRUT413404
CPSY167879
CPHY357809
CPEL335992
CNOV386415 NT01CX_2115
CMIC443906 CMM_1913
CMIC31964 CMS1317
CMET456442
CMAQ397948
CKOR374847
CKLU431943
CJEJ407148
CJEJ360109
CJEJ354242
CJEJ195099
CJEJ192222
CJAP155077
CHYD246194
CHUT269798
CHOM360107
CGLU196627 CG1105
CFET360106
CDES477974
CCUR360105
CCON360104
CCHL340177
CBUR434922
CBUR360115
CBUR227377
CBLO291272
CBLO203907
CBEI290402 CBEI_4028
CACE272562
BTUR314724
BTRI382640
BTHE226186
BSUI470137
BSUI204722
BSP376
BSP107806
BQUI283165
BPER257313
BPAR257311
BOVI236
BMEL359391
BMEL224914
BLON206672
BHER314723
BHEN283166
BHAL272558
BGAR290434
BFRA295405
BFRA272559
BCLA66692
BCIC186490
BCAN483179
BBUR224326
BBRO257310
BBAC360095
BBAC264462
BAPH372461
BAPH198804
BAFZ390236
BABO262698
AYEL322098
AVAR240292
AURANTIMONAS
ASP76114
ASP62928
ASP232721
ASP1667
APHA212042
APER272557
AORE350688
ANAE240017
AMET293826
AMAR329726
AMAR234826
ALAI441768
AFUL224325
AFER243159
AEHR187272
ADEH290397
ACRY349163
ACEL351607
ABUT367737
ABOR393595
ABAC204669
AAVE397945
AAUR290340
AAEO224324


Organism features enriched in list (features available for 393 out of the 420 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Clusters 2.198e-6217
Arrangment:Pairs 5.391e-851112
Disease:Gastroenteritis 0.0010568313
Endospores:No 0.0005944159211
Endospores:Yes 0.00009372353
GC_Content_Range4:40-60 0.0099327140224
Genome_Size_Range5:0-2 0.0000117125155
Genome_Size_Range5:2-4 0.0007113149197
Genome_Size_Range5:4-6 2.843e-6100184
Genome_Size_Range5:6-10 0.00004811947
Genome_Size_Range9:0-1 0.00163752527
Genome_Size_Range9:1-2 0.0010298100128
Genome_Size_Range9:3-4 0.00578336177
Genome_Size_Range9:4-5 0.00687625596
Genome_Size_Range9:5-6 0.00024834588
Genome_Size_Range9:6-8 0.00017241538
Gram_Stain:Gram_Neg 0.0059467212333
Gram_Stain:Gram_Pos 0.006655490150
Habitat:Aquatic 3.435e-67991
Habitat:Host-associated 0.0044647126206
Habitat:Multiple 0.0004155103178
Habitat:Specialized 6.529e-64953
Optimal_temp.:30-37 0.0000757418
Optimal_temp.:37 0.000457857106
Oxygen_Req:Aerobic 0.0030376138185
Oxygen_Req:Anaerobic 0.000116684102
Oxygen_Req:Facultative 1.258e-1199201
Oxygen_Req:Microaerophilic 0.00072531818
Pathogenic_in:Animal 1.653e-62766
Pathogenic_in:Human 1.742e-1797213
Pathogenic_in:No 3.549e-13191226
Salinity:Moderate_halophilic 0.00832771212
Shape:Irregular_coccus 0.00109181717
Shape:Rod 1.072e-13194347
Shape:Sphere 0.00463421819
Shape:Spiral 0.00001653334
Temp._range:Hyperthermophilic 0.00109052223
Temp._range:Mesophilic 1.513e-6299473
Temp._range:Thermophilic 0.00057063235



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ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 11
Effective number of orgs (counting one per cluster within 468 clusters): 7

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
CPNE182082 ncbi Chlamydophila pneumoniae TW-183 0.00279022474
CPNE138677 ncbi Chlamydophila pneumoniae J138 0.00283592484
CPNE115711 ncbi Chlamydophila pneumoniae AR39 0.00297652514
CPNE115713 ncbi Chlamydophila pneumoniae CWL029 0.00297652514
CTRA471472 ncbi Chlamydia trachomatis 434/Bu 0.00312232544
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis 0.00317202554
CMUR243161 ncbi Chlamydia muridarum Nigg 0.00327332574
CABO218497 ncbi Chlamydophila abortus S26/3 0.00342982604
CFEL264202 ncbi Chlamydophila felis Fe/C-56 0.00348322614
CCAV227941 ncbi Chlamydophila caviae GPIC 0.00423542744
WPIP80849 Wolbachia endosymbiont of Brugia malayi 0.00927613334


Names of the homologs of the genes in the group in each of these orgs
  G6861   EG12462   EG10753   EG10132   
CPNE182082 CPB1071CPB1071CPB1071CPB1071
CPNE138677 CPJ1031CPJ1031CPJ1031CPJ1031
CPNE115711 CP_0821CP_0821CP_0821CP_0821
CPNE115713 CPN1031CPN1031CPN1031CPN1031
CTRA471472 CTL0628CTL0628CTL0628CTL0628
CTRA471473 CTLON_0626CTLON_0626CTLON_0626CTLON_0626
CMUR243161 TC_0653TC_0653TC_0653TC_0653
CABO218497 CAB698CAB698CAB698CAB698
CFEL264202 CF0285CF0285CF0285CF0285
CCAV227941 CCA_00731CCA_00731CCA_00731CCA_00731
WPIP80849 WB_0066WB_0067WB_0066WB_0067


Organism features enriched in list (features available for 10 out of the 11 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Disease:Lymphogranuloma_vernerum 0.000265222
Disease:Pharyngitis 1.427e-1688
Disease:bronchitis_and_pneumonitis 1.427e-1688
GC_Content_Range7:40-50 0.00071857117
Genome_Size_Range5:0-2 1.418e-610155
Genome_Size_Range9:1-2 0.00012778128
Gram_Stain:Gram_Neg 0.003485010333
Habitat:Host-associated 0.000026310206
Optimal_temp.:37 0.00002968106
Pathogenic_in:Human 0.000037010213
Shape:Rod 0.005290210347



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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
TREDEGLOW-PWY (trehalose degradation I (low osmolarity))121880.4433
GALACTITOLCAT-PWY (galactitol degradation)73620.4251
GLUTAMINDEG-PWY (glutamine degradation I)1911150.4203
RIBOKIN-PWY (ribose degradation)2791460.4158
PWY-6196 (serine racemization)102750.4072
AST-PWY (arginine degradation II (AST pathway))120830.4034



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG12462   EG10753   EG10132   
G68610.9996410.9996690.999665
EG124620.9997950.999817
EG107530.99979
EG10132



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PAIRWISE BLAST SCORES:

  G6861   EG12462   EG10753   EG10132   
G68610.0f09.3e-324.8e-252.1e-20
EG124621.1e-300.0f04.6e-624.6e-78
EG107538.3e-314.5e-710.0f03.2e-54
EG101321.3e-187.4e-782.1e-480.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

G6861 (centered at G6861)
EG12462 (centered at EG12462)
EG10753 (centered at EG10753)
EG10132 (centered at EG10132)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G6861   EG12462   EG10753   EG10132   
195/623195/623197/623203/623
ABAU360910:0:Tyes2000
ACAU438753:0:Tyes0000
AHYD196024:0:Tyes1580000
APLE416269:0:Tyes0100
APLE434271:0:Tno0100
ASAL382245:5:Tyes0155415541554
ASP62977:0:Tyes000-
BAMB339670:2:Tno0000
BAMB398577:2:Tno0317317317
BAMY326423:0:Tyes0000
BANT260799:0:Tno0000
BANT261594:2:Tno0000
BANT568206:2:Tyes0000
BANT592021:2:Tno0000
BCEN331271:1:Tno-000
BCEN331272:2:Tyes-000
BCER226900:1:Tyes000216
BCER288681:0:Tno0000
BCER315749:1:Tyes012700179
BCER405917:1:Tyes017450214
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