CANDIDATE ID: 1119

CANDIDATE ID: 1119

NUMBER OF GENES: 4
AVERAGE SCORE:    9.9930183e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    2.5000000e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7546 (glcC) (b2980)
   Products of gene:
     - G7546-MONOMER (GlcC transcriptional dual regulator)
     - MONOMER0-562 (GlcC-Glycolate transcriptional dual regulator)
       Regulatees:
        TU0-1962 (glcDEFGBA)
        TU0-1963 (glcC)

- EG11962 (lldR) (b3604)
   Products of gene:
     - EG11962-MONOMER (LldR transcriptional repressor)
       Regulatees:
        TU164 (lldPRD)
     - CPLX0-7689 (LldR-L-lactose transcriptional activator)
       Regulatees:
        TU164 (lldPRD)

- EG11088 (pdhR) (b0113)
   Products of gene:
     - EG11088-MONOMER (PdhR transcriptional dual regulator)
       Regulatees:
        TU0-7806 (hemL)
        TU0-12943 (tomB-hha)
        TU00101 (cyoABCDE)
        TU00158 (ndh)
        TU0-1143 (yfiD)
        TU00151 (fecABCDE)
        TU00522 (pdhR-aceEF-lpdA)
     - MONOMER-59 (PdhR-pyruvate)

- EG10041 (ampD) (b0110)
   Products of gene:
     - EG10041-MONOMER (N-acetyl-anhydromuramyl-L-alanine-amidase)
       Reactions:
        GlcNAc-1,6-anhMurNAc-L-Ala-gamma-D-Glu-DAP-D-Ala + H2O  ->  glcNAc-1,6-anhMurNAc + L-Ala-gamma-D-Glu-DAP-D-Ala
        a peptidoglycan + H2O  =  N-acetylmuramate + a peptide



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ORGANISMS CONTAINING AT LEAST 3 GENES FROM THE GROUP:

Total number of orgs: 203
Effective number of orgs (counting one per cluster within 468 clusters): 135

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317584
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329534
YPES386656 ncbi Yersinia pestis Pestoides F4
YPES377628 ncbi Yersinia pestis Nepal5164
YPES360102 ncbi Yersinia pestis Antiqua4
YPES349746 ncbi Yersinia pestis Angola4
YPES214092 ncbi Yersinia pestis CO924
YPES187410 ncbi Yersinia pestis KIM 104
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80814
XAUT78245 ncbi Xanthobacter autotrophicus Py24
VVUL216895 ncbi Vibrio vulnificus CMCP64
VVUL196600 ncbi Vibrio vulnificus YJ0164
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106334
VFIS312309 ncbi Vibrio fischeri ES1144
VEIS391735 ncbi Verminephrobacter eiseniae EF01-23
VCHO345073 ncbi Vibrio cholerae O3954
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169614
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT24
STHE292459 ncbi Symbiobacterium thermophilum IAM 148634
SSP94122 ncbi Shewanella sp. ANA-34
SSP644076 Silicibacter sp. TrichCH4B4
SSP292414 ncbi Ruegeria sp. TM10404
SSON300269 ncbi Shigella sonnei Ss0464
SSED425104 ncbi Shewanella sediminis HAW-EB34
SPRO399741 ncbi Serratia proteamaculans 5684
SPNE488221 ncbi Streptococcus pneumoniae 705853
SPEA398579 ncbi Shewanella pealeana ATCC 7003454
SONE211586 ncbi Shewanella oneidensis MR-14
SMEL266834 ncbi Sinorhizobium meliloti 10214
SMED366394 ncbi Sinorhizobium medicae WSM4194
SLOI323850 ncbi Shewanella loihica PV-44
SLAC55218 Ruegeria lacuscaerulensis3
SHIGELLA ncbi Shigella flexneri 2a str. 2457T4
SHAL458817 ncbi Shewanella halifaxensis HAW-EB44
SGLO343509 ncbi Sodalis glossinidius morsitans4
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB3
SFLE373384 ncbi Shigella flexneri 5 str. 84014
SFLE198214 ncbi Shigella flexneri 2a str. 3014
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23383
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4764
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B674
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91504
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT184
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty24
SDYS300267 ncbi Shigella dysenteriae Sd1974
SDEN318161 ncbi Shewanella denitrificans OS2174
SDEG203122 ncbi Saccharophagus degradans 2-403
SCO ncbi Streptomyces coelicolor A3(2)4
SBOY300268 ncbi Shigella boydii Sb2274
SBAL402882 ncbi Shewanella baltica OS1854
SBAL399599 ncbi Shewanella baltica OS1954
SAVE227882 ncbi Streptomyces avermitilis MA-46804
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99414
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170254
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170294
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.14
RSP101510 ncbi Rhodococcus jostii RHA13
RSOL267608 ncbi Ralstonia solanacearum GMI10004
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111704
RPOM246200 ncbi Ruegeria pomeroyi DSS-34
RMET266264 ncbi Ralstonia metallidurans CH344
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38414
RFER338969 ncbi Rhodoferax ferrireducens T1184
REUT381666 ncbi Ralstonia eutropha H164
REUT264198 ncbi Ralstonia eutropha JMP1344
RETL347834 ncbi Rhizobium etli CFN 424
RDEN375451 ncbi Roseobacter denitrificans OCh 1144
PTHE370438 ncbi Pelotomaculum thermopropionicum SI3
PSTU379731 ncbi Pseudomonas stutzeri A15014
PSP296591 ncbi Polaromonas sp. JS6664
PPUT76869 ncbi Pseudomonas putida GB-14
PPUT351746 ncbi Pseudomonas putida F14
PPUT160488 ncbi Pseudomonas putida KT24404
PPRO298386 ncbi Photobacterium profundum SS94
PMEN399739 ncbi Pseudomonas mendocina ymp4
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO14
PING357804 ncbi Psychromonas ingrahamii 374
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1254
PFLU220664 ncbi Pseudomonas fluorescens Pf-54
PFLU216595 ncbi Pseudomonas fluorescens SBW254
PFLU205922 ncbi Pseudomonas fluorescens Pf0-14
PENT384676 ncbi Pseudomonas entomophila L484
PATL342610 ncbi Pseudoalteromonas atlantica T6c4
PAER208964 ncbi Pseudomonas aeruginosa PAO14
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA144
OIHE221109 ncbi Oceanobacillus iheyensis HTE8314
OANT439375 ncbi Ochrobactrum anthropi ATCC 491884
NMEN374833 ncbi Neisseria meningitidis 0534424
NMEN272831 ncbi Neisseria meningitidis FAM184
NMEN122587 ncbi Neisseria meningitidis Z24914
NMEN122586 ncbi Neisseria meningitidis MC584
NGON242231 ncbi Neisseria gonorrhoeae FA 10904
MTHE264732 ncbi Moorella thermoacetica ATCC 390733
MSP400668 ncbi Marinomonas sp. MWYL13
MSP266779 ncbi Chelativorans sp. BNC14
MSME246196 ncbi Mycobacterium smegmatis MC2 1553
MMAG342108 ncbi Magnetospirillum magneticum AMB-14
MLOT266835 ncbi Mesorhizobium loti MAFF3030994
MAQU351348 ncbi Marinobacter aquaeolei VT84
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53343
LMON169963 ncbi Listeria monocytogenes EGD-e3
LINN272626 ncbi Listeria innocua Clip112623
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785784
JSP290400 ncbi Jannaschia sp. CCS14
ILOI283942 ncbi Idiomarina loihiensis L2TR4
HMOD498761 ncbi Heliobacterium modesticaldum Ice13
HCHE349521 ncbi Hahella chejuensis KCTC 23964
GURA351605 ncbi Geobacter uraniireducens Rf43
GSUL243231 ncbi Geobacter sulfurreducens PCA3
GKAU235909 ncbi Geobacillus kaustophilus HTA4263
ESP42895 Enterobacter sp.4
EFER585054 ncbi Escherichia fergusonii ATCC 354694
ECOO157 ncbi Escherichia coli O157:H7 EDL9334
ECOL83334 Escherichia coli O157:H74
ECOL585397 ncbi Escherichia coli ED1a4
ECOL585057 ncbi Escherichia coli IAI394
ECOL585056 ncbi Escherichia coli UMN0264
ECOL585055 ncbi Escherichia coli 559894
ECOL585035 ncbi Escherichia coli S884
ECOL585034 ncbi Escherichia coli IAI14
ECOL481805 ncbi Escherichia coli ATCC 87394
ECOL469008 ncbi Escherichia coli BL21(DE3)4
ECOL439855 ncbi Escherichia coli SMS-3-54
ECOL413997 ncbi Escherichia coli B str. REL6064
ECOL409438 ncbi Escherichia coli SE114
ECOL405955 ncbi Escherichia coli APEC O14
ECOL364106 ncbi Escherichia coli UTI894
ECOL362663 ncbi Escherichia coli 5364
ECOL331111 ncbi Escherichia coli E24377A4
ECOL316407 ncbi Escherichia coli K-12 substr. W31104
ECOL199310 ncbi Escherichia coli CFT0734
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10434
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough3
DSHI398580 ncbi Dinoroseobacter shibae DFL 124
DRED349161 ncbi Desulfotomaculum reducens MI-13
DHAF138119 ncbi Desulfitobacterium hafniense Y514
DARO159087 ncbi Dechloromonas aromatica RCB4
CVIO243365 ncbi Chromobacterium violaceum ATCC 124724
CTET212717 ncbi Clostridium tetani E883
CSP78 Caulobacter sp.3
CSP501479 Citreicella sp. SE454
CSAL290398 ncbi Chromohalobacter salexigens DSM 30434
CPSY167879 ncbi Colwellia psychrerythraea 34H4
CNOV386415 ncbi Clostridium novyi NT3
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29013
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto3
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6573
CBOT498213 ncbi Clostridium botulinum B1 str. Okra3
CBOT441772 ncbi Clostridium botulinum F str. Langeland3
CBOT441771 ncbi Clostridium botulinum A str. Hall3
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193973
CBOT36826 Clostridium botulinum A3
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80523
CACE272562 ncbi Clostridium acetobutylicum ATCC 8243
BXEN266265 ncbi Burkholderia xenovorans LB4004
BWEI315730 ncbi Bacillus weihenstephanensis KBAB43
BVIE269482 ncbi Burkholderia vietnamiensis G44
BTHU412694 ncbi Bacillus thuringiensis Al Hakam3
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-273
BTHA271848 ncbi Burkholderia thailandensis E2644
BSUI470137 ncbi Brucella suis ATCC 234454
BSUI204722 ncbi Brucella suis 13304
BSUB ncbi Bacillus subtilis subtilis 1683
BSP36773 Burkholderia sp.4
BPSE320373 ncbi Burkholderia pseudomallei 6684
BPSE320372 ncbi Burkholderia pseudomallei 1710b4
BPSE272560 ncbi Burkholderia pseudomallei K962434
BPET94624 Bordetella petrii4
BPER257313 ncbi Bordetella pertussis Tohama I4
BPAR257311 ncbi Bordetella parapertussis 128224
BOVI236 Brucella ovis4
BMEL359391 ncbi Brucella melitensis biovar Abortus 23084
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M4
BMAL320389 ncbi Burkholderia mallei NCTC 102474
BMAL243160 ncbi Burkholderia mallei ATCC 233444
BLIC279010 ncbi Bacillus licheniformis ATCC 145803
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1103
BHAL272558 ncbi Bacillus halodurans C-1253
BCLA66692 ncbi Bacillus clausii KSM-K163
BCER572264 ncbi Bacillus cereus 03BB1023
BCER405917 Bacillus cereus W3
BCER315749 ncbi Bacillus cytotoxicus NVH 391-983
BCER288681 ncbi Bacillus cereus E33L3
BCER226900 ncbi Bacillus cereus ATCC 145793
BCEN331272 ncbi Burkholderia cenocepacia HI24244
BCEN331271 ncbi Burkholderia cenocepacia AU 10544
BCAN483179 ncbi Brucella canis ATCC 233654
BBRO257310 ncbi Bordetella bronchiseptica RB504
BANT592021 ncbi Bacillus anthracis A02483
BANT568206 ncbi Bacillus anthracis CDC 6843
BANT261594 ncbi Bacillus anthracis Ames Ancestor3
BANT260799 ncbi Bacillus anthracis Sterne3
BAMY326423 ncbi Bacillus amyloliquefaciens FZB423
BAMB398577 ncbi Burkholderia ambifaria MC40-64
BAMB339670 ncbi Burkholderia ambifaria AMMD4
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9414
ASP62977 ncbi Acinetobacter sp. ADP14
ASP62928 ncbi Azoarcus sp. BH724
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4494
AMET293826 ncbi Alkaliphilus metalliredigens QYMF3
AHYD196024 Aeromonas hydrophila dhakensis4
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-14
ACAU438753 ncbi Azorhizobium caulinodans ORS 5714


Names of the homologs of the genes in the group in each of these orgs
  G7546   EG11962   EG11088   EG10041   
YPSE349747 YPSIP31758_3364YPSIP31758_3364YPSIP31758_3364YPSIP31758_3368
YPSE273123 YPTB0712YPTB0712YPTB0712YPTB0709
YPES386656 YPDSF_2934YPDSF_2934YPDSF_2934YPDSF_2931
YPES377628 YPN_0668YPN_0668YPN_0668YPN_0665
YPES360102 YPA_2922YPA_2922YPA_2922YPA_2925
YPES349746 YPANGOLA_A1035YPANGOLA_A1035YPANGOLA_A1035YPANGOLA_A1039
YPES214092 YPO3420YPO3420YPO3420YPO3423
YPES187410 Y0766Y0766Y0766Y0763
YENT393305 YE0698YE0698YE0698YE0692
XAUT78245 XAUT_4351XAUT_3930XAUT_4351XAUT_1896
VVUL216895 VV1_1629VV1_1629VV1_1629VV1_1628
VVUL196600 VV2774VV2774VV2774VV2776
VPAR223926 VP2520VP2520VP2520VP2521
VFIS312309 VF2182VF2182VF2182VF2183
VEIS391735 VEIS_3567VEIS_1542VEIS_1497
VCHO345073 VC0395_A1991VC0395_A1991VC0395_A1991VC0395_A1997
VCHO VC2415VC2415VC2415VC2421
STYP99287 STM0151STM3693STM0151STM0146
STHE292459 STH97STH97STH97STH1068
SSP94122 SHEWANA3_0425SHEWANA3_0425SHEWANA3_0425SHEWANA3_0423
SSP644076 SCH4B_2769SCH4B_2769SCH4B_2769SCH4B_1827
SSP292414 TM1040_2589TM1040_2589TM1040_2589TM1040_1916
SSON300269 SSO_0121SSO_3801SSO_0121SSO_0118
SSED425104 SSED_0430SSED_0430SSED_0430SSED_0428
SPRO399741 SPRO_4012SPRO_4012SPRO_4012SPRO_1659
SPNE488221 SP70585_2240SP70585_2240SP70585_2240
SPEA398579 SPEA_0418SPEA_0418SPEA_0418SPEA_0416
SONE211586 SO_0423SO_0423SO_0423SO_0421
SMEL266834 SMC00829SMC00829SMC00829SMC01854
SMED366394 SMED_0391SMED_0391SMED_0391SMED_2104
SLOI323850 SHEW_3432SHEW_3432SHEW_3432SHEW_3434
SLAC55218 SL1157_1855SL1157_1855SL1157_1855
SHIGELLA GLCCLLDRPDHRAMPD
SHAL458817 SHAL_0475SHAL_0475SHAL_0475SHAL_0473
SGLO343509 SG0466SG0466SG0466SG0782
SFUM335543 SFUM_1522SFUM_1522SFUM_1522
SFLE373384 SFV_3035SFV_3927SFV_0104SFV_0101
SFLE198214 AAN44498.1AAN45090.1AAN41774.1AAN41771.1
SERY405948 SACE_3859SACE_3859SACE_3859
SENT454169 SEHA_C0165SEHA_C4017SEHA_C0165SEHA_C0160
SENT321314 SCH_0150SCH_3617SCH_0150SCH_0145
SENT295319 SPA0155SPA3545SPA0155SPA0150
SENT220341 STY0174STY4103STY0174STY0168
SENT209261 T0157T3826T0157T0152
SDYS300267 SDY_0143SDY_4037SDY_0143SDY_0140
SDEN318161 SDEN_3384SDEN_3384SDEN_3384SDEN_3386
SDEG203122 SDE_0954SDE_1270SDE_0876
SCO SCO2442SCO2442SCO2442SCO1172
SBOY300268 SBO_0102SBO_3609SBO_0102SBO_0099
SBAL402882 SHEW185_3935SHEW185_3935SHEW185_3935SHEW185_3937
SBAL399599 SBAL195_4055SBAL195_4055SBAL195_4055SBAL195_4057
SAVE227882 SAV7278SAV7278SAV1318SAV7179
RXYL266117 RXYL_2589RXYL_2589RXYL_2589RXYL_2196
RSPH349102 RSPH17025_0194RSPH17025_0194RSPH17025_0194RSPH17025_2224
RSPH349101 RSPH17029_2695RSPH17029_2695RSPH17029_2695RSPH17029_0947
RSPH272943 RSP_1034RSP_1034RSP_1034RSP_2272
RSP101510 RHA1_RO02909RHA1_RO08849RHA1_RO08849
RSOL267608 RSC1078RSC1078RSC1078RSC2806
RRUB269796 RRU_A1414RRU_A1414RRU_A1414RRU_A0960
RPOM246200 SPO_3231SPO_3231SPO_3231SPO_2967
RMET266264 RMET_5900RMET_5900RMET_5900RMET_3089
RLEG216596 RL2337PRL120399PRL120779RL3320
RFER338969 RFER_0202RFER_0202RFER_0202RFER_3346
REUT381666 H16_B2456H16_B0094H16_B0094H16_A3236
REUT264198 REUT_B3714REUT_B5449REUT_B5449REUT_A2942
RETL347834 RHE_CH02059RHE_PF00067RHE_PF00235RHE_CH02860
RDEN375451 RD1_1326RD1_1326RD1_1326RD1_1998
PTHE370438 PTH_2233PTH_2232PTH_2233
PSTU379731 PST_0430PST_3335PST_3335PST_3626
PSP296591 BPRO_3977BPRO_3963BPRO_4884BPRO_1109
PPUT76869 PPUTGB1_2160PPUTGB1_4735PPUTGB1_4735PPUTGB1_0823
PPUT351746 PPUT_2019PPUT_4600PPUT_4600PPUT_0812
PPUT160488 PP_3744PP_4734PP_4734PP_0789
PPRO298386 PBPRA3197PBPRA3197PBPRA3197PBPRA3198
PMEN399739 PMEN_0204PMEN_3633PMEN_3633PMEN_0780
PLUM243265 PLU3624PLU3624PLU3624PLU2790
PING357804 PING_2928PING_2928PING_2928PING_2940
PHAL326442 PSHAA0390PSHAA0390PSHAA0390PSHAA0388
PFLU220664 PFL_2270PFL_0818PFL_0818PFL_0853
PFLU216595 PFLU5277PFLU5277PFLU5277PFLU0798
PFLU205922 PFL_0754PFL_0754PFL_0754PFL_0787
PENT384676 PSEEN0769PSEEN0769PSEEN0769PSEEN0927
PATL342610 PATL_3349PATL_3349PATL_3349PATL_3347
PAER208964 PA5356PA4769PA4769PA4522
PAER208963 PA14_70710PA14_63070PA14_63070PA14_58670
OIHE221109 OB0369OB0369OB0369OB0830
OANT439375 OANT_3007OANT_3007OANT_3007OANT_1732
NMEN374833 NMCC_1623NMCC_1623NMCC_1623NMCC_0621
NMEN272831 NMC1629NMC1629NMC1629NMC0617
NMEN122587 NMA1965NMA1965NMA1965NMA0867
NMEN122586 NMB_1711NMB_1711NMB_1711NMB_0668
NGON242231 NGO1360NGO1360NGO1360NGO0237
MTHE264732 MOTH_2304MOTH_2304MOTH_2304
MSP400668 MMWYL1_0071MMWYL1_0071MMWYL1_0071
MSP266779 MESO_0366MESO_0366MESO_0366MESO_2018
MSME246196 MSMEG_0596MSMEG_2794MSMEG_2605
MMAG342108 AMB0238AMB0238AMB0238AMB0859
MLOT266835 MLL6911MLL6911MLL6911MLL1570
MAQU351348 MAQU_3306MAQU_0362MAQU_0362MAQU_0954
LWEL386043 LWE0926LWE0926LWE0926
LMON169963 LMO0948LMO0948LMO0948
LINN272626 LIN0947LIN0947LIN0947
KPNE272620 GKPORF_B4399GKPORF_B3310GKPORF_B4399GKPORF_B4393
JSP290400 JANN_1666JANN_1666JANN_1666JANN_1219
ILOI283942 IL0457IL0457IL0457IL0455
HMOD498761 HM1_3142HM1_3142HM1_3142
HCHE349521 HCH_01271HCH_01271HCH_01271HCH_01921
GURA351605 GURA_0158GURA_0158GURA_2197
GSUL243231 GSU_1626GSU_1626GSU_1626
GKAU235909 GK0396GK2015GK2015
ESP42895 ENT638_0659ENT638_0131ENT638_0659ENT638_0654
EFER585054 EFER_0133EFER_3598EFER_0133EFER_0130
ECOO157 PDHRLLDRPDHRAMPD
ECOL83334 ECS0117ECS4482ECS0117ECS0114
ECOL585397 ECED1_3623ECED1_4290ECED1_0117ECED1_0108
ECOL585057 ECIAI39_3468ECIAI39_4125ECIAI39_0113ECIAI39_0110
ECOL585056 ECUMN_3456ECUMN_4119ECUMN_0110ECUMN_0107
ECOL585055 EC55989_0106EC55989_4071EC55989_0106EC55989_0103
ECOL585035 ECS88_3355ECS88_4021ECS88_0121ECS88_0112
ECOL585034 ECIAI1_3122ECIAI1_3777ECIAI1_0110ECIAI1_0107
ECOL481805 ECOLC_0720ECOLC_0104ECOLC_3546ECOLC_3549
ECOL469008 ECBD_0758ECBD_0121ECBD_3506ECBD_3509
ECOL439855 ECSMS35_3258ECSMS35_3941ECSMS35_0123ECSMS35_0113
ECOL413997 ECB_02849ECB_03462ECB_00112ECB_00109
ECOL409438 ECSE_3258ECSE_3886ECSE_0113ECSE_0110
ECOL405955 APECO1_3447APECO1_2851APECO1_1872APECO1_1879
ECOL364106 UTI89_C3395UTI89_C4145UTI89_C0125UTI89_C0118
ECOL362663 ECP_3058ECP_3705ECP_0119ECP_0110
ECOL331111 ECE24377A_3440ECE24377A_4108ECE24377A_0115ECE24377A_0112
ECOL316407 ECK2975:JW2947:B2980ECK3594:JW3579:B3604ECK0112:JW0109:B0113ECK0109:JW0106:B0110
ECOL199310 C3710C4426C0140C0129
ECAR218491 ECA3790ECA3790ECA3790ECA3795
DVUL882 DVU_2785DVU_2785DVU_2785
DSHI398580 DSHI_3026DSHI_3026DSHI_3026DSHI_2783
DRED349161 DRED_2187DRED_2187DRED_2188
DHAF138119 DSY2275DSY2275DSY2275DSY2169
DARO159087 DARO_1767DARO_1767DARO_1767DARO_0663
CVIO243365 CV_3037CV_3037CV_3037CV_0566
CTET212717 CTC_00971CTC_00971CTC_00971
CSP78 CAUL_1426CAUL_1834CAUL_3680
CSP501479 CSE45_4250CSE45_4250CSE45_4250CSE45_2847
CSAL290398 CSAL_0403CSAL_0403CSAL_0403CSAL_0854
CPSY167879 CPS_4809CPS_4809CPS_4809CPS_4811
CNOV386415 NT01CX_1608NT01CX_1608NT01CX_1608
CHYD246194 CHY_0434CHY_0434CHY_0434
CBOT536232 CLM_1249CLM_1249CLM_1755
CBOT515621 CLJ_B1140CLJ_B1618CLJ_B1618
CBOT498213 CLD_3469CLD_3034CLD_3034
CBOT441772 CLI_1180CLI_1600CLI_1600
CBOT441771 CLC_1143CLC_1143CLC_1553
CBOT441770 CLB_1131CLB_1131CLB_1541
CBOT36826 CBO1091CBO1091CBO1520
CBEI290402 CBEI_0309CBEI_4096CBEI_5004
CACE272562 CAC2546CAC2546CAC2546
BXEN266265 BXE_B1175BXE_B1175BXE_B1175BXE_C0344
BWEI315730 BCERKBAB4_1217BCERKBAB4_1217BCERKBAB4_1217
BVIE269482 BCEP1808_2855BCEP1808_2855BCEP1808_2855BCEP1808_0569
BTHU412694 BALH_1164BALH_1164BALH_1164
BTHU281309 BT9727_1193BT9727_1193BT9727_1193
BTHA271848 BTH_II2081BTH_II2081BTH_II2081BTH_I1152
BSUI470137 BSUIS_B0180BSUIS_B0180BSUIS_B0180BSUIS_A1497
BSUI204722 BR_A0177BR_A0177BR_A0177BR_1444
BSUB BSU34180BSU34180BSU34180
BSP36773 BCEP18194_B0034BCEP18194_B0034BCEP18194_A6080BCEP18194_A3678
BPSE320373 BURPS668_A0554BURPS668_A0554BURPS668_A0554BURPS668_3476
BPSE320372 BURPS1710B_B2204BURPS1710B_B2204BURPS1710B_B2204BURPS1710B_A3790
BPSE272560 BPSS0320BPSS0320BPSS0320BPSL2993
BPET94624 BPET4865BPET4865BPET4865BPET4329
BPER257313 BP3681BP3681BP3681BP0076
BPAR257311 BPP0097BPP0097BPP0097BPP0498
BOVI236 GBOORFA0169GBOORFA0169GBOORFA0169GBOORF1458
BMEL359391 BAB2_0172BAB2_0172BAB2_0172BAB1_1462
BMEL224914 BMEII1066BMEII1066BMEII1066BMEI0565
BMAL320389 BMA10247_A0866BMA10247_A0866BMA10247_A0866BMA10247_3271
BMAL243160 BMA_A1432BMA_A1432BMA_A1432BMA_2511
BLIC279010 BL03455BL03455BL03455
BJAP224911 BLL6835BLL6835BLR6611
BHAL272558 BH1835BH1835BH1835
BCLA66692 ABC4039ABC0978ABC4038
BCER572264 BCA_1353BCA_1353BCA_1353
BCER405917 BCE_1415BCE_1415BCE_1415
BCER315749 BCER98_1023BCER98_1023BCER98_1023
BCER288681 BCE33L1195BCE33L1195BCE33L1195
BCER226900 BC_1302BC_1302BC_1302
BCEN331272 BCEN2424_6710BCEN2424_6710BCEN2424_6710BCEN2424_0593
BCEN331271 BCEN_6475BCEN_6475BCEN_6475BCEN_0111
BCAN483179 BCAN_B0177BCAN_B0177BCAN_B0177BCAN_A1478
BBRO257310 BB0096BB0096BB0096BB0503
BANT592021 BAA_1381BAA_1381BAA_1381
BANT568206 BAMEG_3283BAMEG_3283BAMEG_3283
BANT261594 GBAA1314GBAA1314GBAA1314
BANT260799 BAS1215BAS1215BAS1215
BAMY326423 RBAM_031490RBAM_031490RBAM_031490
BAMB398577 BAMMC406_5490BAMMC406_5490BAMMC406_2669BAMMC406_0521
BAMB339670 BAMB_4937BAMB_4937BAMB_2802BAMB_0496
BABO262698 BRUAB2_0172BRUAB2_0172BRUAB2_0172BRUAB1_1439
ASP62977 ACIAD0107ACIAD0107ACIAD0107ACIAD0063
ASP62928 AZO1170AZO1170AZO1170AZO3350
ASAL382245 ASA_0418ASA_0418ASA_0418ASA_0417
AMET293826 AMET_3750AMET_3750AMET_3750
AHYD196024 AHA_3864AHA_3864AHA_3864AHA_3865
AEHR187272 MLG_2283MLG_2283MLG_2283MLG_0224
ACAU438753 AZC_0823AZC_0823AZC_0823AZC_4549


Organism features enriched in list (features available for 191 out of the 203 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Pairs 0.000011656112
Disease:Botulism 0.003642355
Disease:Brucellosis 0.003642355
Disease:Bubonic_plague 0.001172166
Disease:Dysentery 0.001172166
Disease:Gastroenteritis 0.00110661013
Disease:Opportunistic_infections 0.003642355
Endospores:No 2.677e-938211
Endospores:Yes 6.786e-73453
GC_Content_Range4:0-40 6.031e-1529213
GC_Content_Range4:40-60 1.708e-699224
GC_Content_Range4:60-100 0.000614563145
GC_Content_Range7:30-40 9.902e-1320166
GC_Content_Range7:50-60 6.714e-859107
GC_Content_Range7:60-70 0.000631359134
Genome_Size_Range5:2-4 2.557e-836197
Genome_Size_Range5:4-6 4.899e-31122184
Genome_Size_Range5:6-10 3.782e-83347
Genome_Size_Range9:2-3 2.974e-914120
Genome_Size_Range9:4-5 5.972e-146496
Genome_Size_Range9:5-6 3.157e-125888
Genome_Size_Range9:6-8 2.823e-62638
Genome_Size_Range9:8-10 0.006260879
Gram_Stain:Gram_Neg 8.983e-8138333
Habitat:Host-associated 0.000010545206
Habitat:Multiple 2.297e-785178
Habitat:Specialized 0.0014680853
Habitat:Terrestrial 0.00505181731
Motility:No 1.468e-1118151
Motility:Yes 2.633e-14130267
Oxygen_Req:Anaerobic 0.000250519102
Oxygen_Req:Facultative 7.125e-792201
Pathogenic_in:Human 0.003979983213
Shape:Coccus 3.505e-61082
Shape:Rod 4.989e-18160347
Shape:Sphere 0.0044453119
Shape:Spiral 0.0001326234
Temp._range:Hyperthermophilic 0.0010349123
Temp._range:Mesophilic 0.0020280167473



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 389
Effective number of orgs (counting one per cluster within 468 clusters): 312

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM40
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A1
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110181
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103311
XFAS405440 ncbi Xylella fastidiosa M120
XFAS183190 ncbi Xylella fastidiosa Temecula10
XFAS160492 ncbi Xylella fastidiosa 9a5c0
XCAM487884 Xanthomonas campestris pv. paulliniae1
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-101
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80041
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339131
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3061
WSUC273121 ncbi Wolinella succinogenes DSM 17400
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTHE300852 ncbi Thermus thermophilus HB80
TTHE262724 ncbi Thermus thermophilus HB270
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB40
TSP28240 Thermotoga sp.0
TSP1755 Thermoanaerobacter sp.0
TROS309801 ncbi Thermomicrobium roseum DSM 51591
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332230
TPET390874 ncbi Thermotoga petrophila RKU-10
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TMAR243274 ncbi Thermotoga maritima MSB80
TLET416591 ncbi Thermotoga lettingae TMO0
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TFUS269800 ncbi Thermobifida fusca YX0
TERY203124 ncbi Trichodesmium erythraeum IMS1010
TELO197221 ncbi Thermosynechococcus elongatus BP-10
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12510
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252591
TDEN243275 ncbi Treponema denticola ATCC 354050
TCRU317025 ncbi Thiomicrospira crunogena XCL-21
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen0
STRO369723 ncbi Salinispora tropica CNB-4400
STOK273063 ncbi Sulfolobus tokodaii 70
STHE322159 ncbi Streptococcus thermophilus LMD-90
STHE299768 ncbi Streptococcus thermophilus CNRZ10660
STHE264199 ncbi Streptococcus thermophilus LMG 183110
SSUI391296 ncbi Streptococcus suis 98HAH330
SSUI391295 ncbi Streptococcus suis 05ZYH330
SSP84588 ncbi Synechococcus sp. WH 81020
SSP64471 ncbi Synechococcus sp. CC93110
SSP387093 ncbi Sulfurovum sp. NBC37-10
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)0
SSP321327 ncbi Synechococcus sp. JA-3-3Ab0
SSP1148 ncbi Synechocystis sp. PCC 68030
SSP1131 Synechococcus sp. CC96050
SSOL273057 ncbi Sulfolobus solfataricus P20
SRUB309807 ncbi Salinibacter ruber DSM 138550
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103940
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-60
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-140
SPNE171101 ncbi Streptococcus pneumoniae R60
SPNE170187 ncbi Streptococcus pneumoniae G540
SPNE1313 Streptococcus pneumoniae0
SMUT210007 ncbi Streptococcus mutans UA1590
SMAR399550 ncbi Staphylothermus marinus F10
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14350
SGOR29390 Streptococcus gordonii Challis0
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122280
SEPI176279 ncbi Staphylococcus epidermidis RP62A0
SELO269084 ncbi Synechococcus elongatus PCC 63010
SAUR93062 ncbi Staphylococcus aureus aureus COL0
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83250
SAUR426430 ncbi Staphylococcus aureus aureus Newman0
SAUR418127 ncbi Staphylococcus aureus aureus Mu30
SAUR367830 Staphylococcus aureus aureus USA3000
SAUR359787 ncbi Staphylococcus aureus aureus JH10
SAUR359786 ncbi Staphylococcus aureus aureus JH90
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4760
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2520
SAUR273036 ncbi Staphylococcus aureus RF1220
SAUR196620 ncbi Staphylococcus aureus aureus MW20
SAUR158879 ncbi Staphylococcus aureus aureus N3150
SAUR158878 ncbi Staphylococcus aureus aureus Mu500
SARE391037 ncbi Salinispora arenicola CNS-2050
SALA317655 ncbi Sphingopyxis alaskensis RB22561
SAGA211110 ncbi Streptococcus agalactiae NEM3161
SAGA208435 ncbi Streptococcus agalactiae 2603V/R1
SAGA205921 ncbi Streptococcus agalactiae A9091
SACI56780 ncbi Syntrophus aciditrophicus SB0
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RTYP257363 ncbi Rickettsia typhi Wilmington0
RSP357808 ncbi Roseiflexus sp. RS-11
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332091
RRIC452659 ncbi Rickettsia rickettsii Iowa1
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith1
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RPAL316058 ncbi Rhodopseudomonas palustris HaA21
RPAL316057 ncbi Rhodopseudomonas palustris BisB51
RPAL316056 ncbi Rhodopseudomonas palustris BisB181
RPAL316055 ncbi Rhodopseudomonas palustris BisA531
RPAL258594 ncbi Rhodopseudomonas palustris CGA0091
RMAS416276 ncbi Rickettsia massiliae MTU51
RFEL315456 ncbi Rickettsia felis URRWXCal21
RCON272944 ncbi Rickettsia conorii Malish 71
RCAS383372 ncbi Roseiflexus castenholzii DSM 139411
RCAN293613 ncbi Rickettsia canadensis McKiel1
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RALB246199 Ruminococcus albus 80
RAKA293614 ncbi Rickettsia akari Hartford1
PTOR263820 ncbi Picrophilus torridus DSM 97900
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30001
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a1
PSP56811 Psychrobacter sp.1
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-11
PSP117 Pirellula sp.0
PRUM264731 ncbi Prevotella ruminicola 230
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257450
PMUL272843 ncbi Pasteurella multocida multocida Pm701
PMOB403833 ncbi Petrotoga mobilis SJ950
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74547 ncbi Prochlorococcus marinus MIT 93130
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR59920 ncbi Prochlorococcus marinus NATL2A0
PMAR167555 ncbi Prochlorococcus marinus NATL1A0
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13750
PMAR146891 ncbi Prochlorococcus marinus AS96010
PLUT319225 ncbi Chlorobium luteolum DSM 2730
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 170
PHOR70601 ncbi Pyrococcus horikoshii OT30
PGIN242619 ncbi Porphyromonas gingivalis W830
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PDIS435591 ncbi Parabacteroides distasonis ATCC 85030
PCRY335284 ncbi Psychrobacter cryohalolentis K51
PCAR338963 ncbi Pelobacter carbinolicus DSM 23800
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PARC259536 ncbi Psychrobacter arcticus 273-41
PAER178306 ncbi Pyrobaculum aerophilum IM20
PACN267747 ncbi Propionibacterium acnes KPA1712020
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong1
OCAR504832 ncbi Oligotropha carboxidovorans OM51
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2551
NSP387092 ncbi Nitratiruptor sp. SB155-20
NSP103690 ncbi Nostoc sp. PCC 71200
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
NOCE323261 ncbi Nitrosococcus oceani ATCC 197071
NMUL323848 ncbi Nitrosospira multiformis ATCC 251961
NHAM323097 ncbi Nitrobacter hamburgensis X141
NEUT335283 ncbi Nitrosomonas eutropha C911
NEUR228410 ncbi Nitrosomonas europaea ATCC 197181
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124441
MXAN246197 ncbi Myxococcus xanthus DK 16221
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-11
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra0
MTUB336982 ncbi Mycobacterium tuberculosis F110
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MTBRV ncbi Mycobacterium tuberculosis H37Rv0
MTBCDC ncbi Mycobacterium tuberculosis CDC15510
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSP409 Methylobacterium sp.1
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPET420662 ncbi Methylibium petroleiphilum PM11
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK1
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MFLA265072 ncbi Methylobacillus flagellatus KT1
MEXT419610 ncbi Methylobacterium extorquens PA11
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MCAP243233 ncbi Methylococcus capsulatus Bath1
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P20
MBOV233413 ncbi Mycobacterium bovis AF2122/970
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MAVI243243 ncbi Mycobacterium avium 1040
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAER449447 ncbi Microcystis aeruginosa NIES-8430
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
MABS561007 ncbi Mycobacterium abscessus ATCC 199770
LXYL281090 ncbi Leifsonia xyli xyli CTCB071
LSPH444177 ncbi Lysinibacillus sphaericus C3-410
LSAK314315 ncbi Lactobacillus sakei sakei 23K0
LREU557436 ncbi Lactobacillus reuteri DSM 200160
LPNE400673 ncbi Legionella pneumophila Corby0
LPNE297246 ncbi Legionella pneumophila Paris0
LPNE297245 ncbi Legionella pneumophila Lens0
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 10
LPLA220668 ncbi Lactobacillus plantarum WCFS10
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82930
LLAC272623 ncbi Lactococcus lactis lactis Il14030
LLAC272622 ncbi Lactococcus lactis cremoris SK110
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-000
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1300
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566010
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LCHO395495 ncbi Leptothrix cholodnii SP-61
LCAS321967 ncbi Lactobacillus casei ATCC 3340
LBRE387344 ncbi Lactobacillus brevis ATCC 3670
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1970
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5500
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)0
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)0
LACI272621 ncbi Lactobacillus acidophilus NCFM0
KRAD266940 ncbi Kineococcus radiotolerans SRS302161
JSP375286 ncbi Janthinobacterium sp. Marseille1
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSAL478009 ncbi Halobacterium salinarum R10
HPYL85963 ncbi Helicobacter pylori J990
HPYL357544 ncbi Helicobacter pylori HPAG10
HPY ncbi Helicobacter pylori 266950
HNEP81032 Hyphomonas neptunium1
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMAR272569 ncbi Haloarcula marismortui ATCC 430490
HHEP235279 ncbi Helicobacter hepaticus ATCC 514490
HHAL349124 ncbi Halorhodospira halophila SL11
HDUC233412 ncbi Haemophilus ducreyi 35000HP1
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237791
HARS204773 ncbi Herminiimonas arsenicoxydans1
HACI382638 ncbi Helicobacter acinonychis Sheeba0
GVIO251221 ncbi Gloeobacter violaceus PCC 74210
GOXY290633 ncbi Gluconobacter oxydans 621H0
GMET269799 ncbi Geobacter metallireducens GS-150
GFOR411154 ncbi Gramella forsetii KT08031
GBET391165 ncbi Granulibacter bethesdensis CGDNIH11
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-001
FTUL418136 ncbi Francisella tularensis tularensis WY96-34181
FTUL401614 ncbi Francisella novicida U1121
FTUL393115 ncbi Francisella tularensis tularensis FSC1981
FTUL393011 ncbi Francisella tularensis holarctica OSU181
FTUL351581 Francisella tularensis holarctica FSC2001
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S850
FSP1855 Frankia sp. EAN1pec0
FSP106370 ncbi Frankia sp. CcI30
FRANT ncbi Francisella tularensis tularensis SCHU S41
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250171
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255861
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B10
FMAG334413 ncbi Finegoldia magna ATCC 293280
FJOH376686 ncbi Flavobacterium johnsoniae UW1011
FALN326424 ncbi Frankia alni ACN14a0
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ELIT314225 ncbi Erythrobacter litoralis HTCC25941
EFAE226185 ncbi Enterococcus faecalis V5830
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DSP255470 ncbi Dehalococcoides sp. CBDB10
DSP216389 ncbi Dehalococcoides sp. BAV10
DRAD243230 ncbi Deinococcus radiodurans R11
DPSY177439 ncbi Desulfotalea psychrophila LSv540
DOLE96561 ncbi Desulfococcus oleovorans Hxd30
DNOD246195 ncbi Dichelobacter nodosus VCS1703A1
DGEO319795 ncbi Deinococcus geothermalis DSM 113000
DETH243164 ncbi Dehalococcoides ethenogenes 1950
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA0
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTEP194439 ncbi Chlorobium tepidum TLS0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)1
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE250
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPER289380 ncbi Clostridium perfringens SM1011
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10621
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3820
CMIC31964 ncbi Clavibacter michiganensis sepedonicus0
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CJEJ407148 ncbi Campylobacter jejuni jejuni 811160
CJEJ360109 ncbi Campylobacter jejuni doylei 269.970
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1760
CJEJ195099 ncbi Campylobacter jejuni RM12210
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111680
CJEI306537 ncbi Corynebacterium jeikeium K4110
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334060
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3810
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130320
CFET360106 ncbi Campylobacter fetus fetus 82-400
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CEFF196164 ncbi Corynebacterium efficiens YS-3140
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131291
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C0
CCUR360105 ncbi Campylobacter curvus 525.920
CCON360104 ncbi Campylobacter concisus 138260
CCHL340177 ncbi Chlorobium chlorochromatii CaD30
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1111
CBUR360115 ncbi Coxiella burnetii RSA 3311
CBUR227377 ncbi Coxiella burnetii RSA 4931
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN0
CBLO203907 ncbi Candidatus Blochmannia floridanus0
CABO218497 ncbi Chlamydophila abortus S26/30
BTUR314724 ncbi Borrelia turicatae 91E1350
BTRI382640 ncbi Bartonella tribocorum CIP 1054761
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54820
BSP376 Bradyrhizobium sp.1
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)0
BQUI283165 ncbi Bartonella quintana Toulouse0
BLON206672 ncbi Bifidobacterium longum NCC27050
BHER314723 ncbi Borrelia hermsii DAH0
BHEN283166 ncbi Bartonella henselae Houston-11
BGAR290434 ncbi Borrelia garinii PBi0
BFRA295405 ncbi Bacteroides fragilis YCH460
BFRA272559 ncbi Bacteroides fragilis NCTC 93430
BCIC186490 Candidatus Baumannia cicadellinicola0
BBUR224326 ncbi Borrelia burgdorferi B310
BBAC360095 ncbi Bartonella bacilliformis KC5831
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1000
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)0
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AVAR240292 ncbi Anabaena variabilis ATCC 294130
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP76114 ncbi Aromatoleum aromaticum EbN11
ASP232721 ncbi Acidovorax sp. JS421
ASP1667 Arthrobacter sp.1
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL031
APLE416269 ncbi Actinobacillus pleuropneumoniae L201
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K10
AORE350688 ncbi Alkaliphilus oremlandii OhILAs0
ANAE240017 Actinomyces oris MG10
AMAR329726 ncbi Acaryochloris marina MBIC110170
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232701
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C0
ACRY349163 ncbi Acidiphilium cryptum JF-51
ACEL351607 ncbi Acidothermus cellulolyticus 11B0
ABUT367737 ncbi Arcobacter butzleri RM40180
ABOR393595 ncbi Alcanivorax borkumensis SK21
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3450
AAVE397945 ncbi Acidovorax citrulli AAC00-11
AAUR290340 ncbi Arthrobacter aurescens TC10
AAEO224324 ncbi Aquifex aeolicus VF50


Names of the homologs of the genes in the group in each of these orgs
  G7546   EG11962   EG11088   EG10041   
ZMOB264203
XORY360094 XOOORF_0774
XORY342109 XOO3876
XORY291331 XOO4100
XFAS405440
XFAS183190
XFAS160492
XCAM487884 XCC-B100_3989
XCAM316273 XCAORF_0490
XCAM314565 XC_3877
XCAM190485 XCC3805
XAXO190486 XAC3860
WSUC273121
WPIP955
WPIP80849
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496
TWHI203267
TVOL273116
TTHE300852
TTHE262724
TTEN273068
TSP28240
TSP1755
TROS309801 TRD_A0153
TPSE340099
TPET390874
TPEN368408
TPAL243276
TMAR243274
TLET416591
TKOD69014
TFUS269800
TERY203124
TELO197221
TDEN326298
TDEN292415 TBD_0776
TDEN243275
TCRU317025 TCR_1366
TACI273075
SWOL335541
STRO369723
STOK273063
STHE322159
STHE299768
STHE264199
SSUI391296
SSUI391295
SSP84588
SSP64471
SSP387093
SSP321332
SSP321327
SSP1148
SSP1131
SSOL273057
SRUB309807
SPYO370554
SPYO370553
SPYO370551
SPYO319701
SPYO293653
SPYO286636
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SPNE487214
SPNE487213
SPNE171101
SPNE170187
SPNE1313
SMUT210007
SMAR399550
SHAE279808
SGOR29390
SEPI176280
SEPI176279
SELO269084
SAUR93062
SAUR93061
SAUR426430
SAUR418127
SAUR367830
SAUR359787
SAUR359786
SAUR282459
SAUR282458
SAUR273036
SAUR196620
SAUR158879
SAUR158878
SARE391037
SALA317655 SALA_1735
SAGA211110 GBS0672
SAGA208435 SAG_0699
SAGA205921 SAK_0825
SACI56780
SACI330779
RTYP257363
RSP357808 ROSERS_0690
RSAL288705 RSAL33209_2323
RRIC452659 RRIOWA_1588
RRIC392021 A1G_07455
RPRO272947
RPAL316058 RPB_1985
RPAL316057 RPD_3403
RPAL316056 RPC_2185
RPAL316055 RPE_2098
RPAL258594 RPA3539
RMAS416276 RMA_1348
RFEL315456 RF_1384
RCON272944 RC1358
RCAS383372 RCAS_0212
RCAN293613 A1E_05615
RBEL391896
RBEL336407
RALB246199
RAKA293614 A1C_06790
PTOR263820
PSYR223283 PSPTO_0950
PSYR205918 PSYR_0817
PSP56811 PSYCPRWF_0512
PSP312153 PNUC_0203
PSP117
PRUM264731
PPEN278197
PMUL272843 PM0083
PMOB403833
PMAR93060
PMAR74547
PMAR74546
PMAR59920
PMAR167555
PMAR167546
PMAR167542
PMAR167540
PMAR167539
PMAR146891
PLUT319225
PISL384616
PINT246198
PHOR70601
PGIN242619
PFUR186497
PDIS435591
PCRY335284 PCRYO_2038
PCAR338963
PAST100379
PARS340102
PARC259536 PSYC_1757
PAER178306
PACN267747
PABY272844
OTSU357244 OTBS_0048
OCAR504832 OCAR_5056
NWIN323098 NWI_1042
NSP387092
NSP103690
NSEN222891
NPHA348780
NOCE323261 NOC_0866
NMUL323848 NMUL_A1812
NHAM323097 NHAM_1270
NEUT335283 NEUT_0535
NEUR228410 NE2182
NARO279238 SARO_3051
MXAN246197 MXAN_0987
MVAN350058 MVAN_0952
MTUB419947
MTUB336982
MTHE349307
MTHE187420
MTBRV
MTBCDC
MSYN262723
MSTA339860
MSP409 M446_4374
MSED399549
MPUL272635
MPNE272634
MPET420662 MPE_A3215
MPEN272633
MMYC272632
MMOB267748
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR368407
MMAR267377
MLEP272631
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGIL350054 MFLV_0016
MGEN243273
MFLO265311
MFLA265072 MFLA_0213
MEXT419610 MEXT_0941
MCAP340047
MCAP243233 MCA_3052
MBUR259564
MBOV410289
MBOV233413
MBAR269797
MAVI243243
MART243272
MAER449447
MAEO419665
MACE188937
MABS561007
LXYL281090 LXX15885
LSPH444177
LSAK314315
LREU557436
LPNE400673
LPNE297246
LPNE297245
LPNE272624
LPLA220668
LMES203120
LLAC272623
LLAC272622
LJOH257314
LINT363253
LINT267671
LINT189518
LHEL405566
LGAS324831
LDEL390333
LDEL321956
LCHO395495 LCHO_0381
LCAS321967
LBRE387344
LBOR355277
LBOR355276
LBIF456481
LBIF355278
LACI272621
KRAD266940 KRAD_4399
JSP375286 MMA_2980
IHOS453591
HWAL362976
HSP64091
HSAL478009
HPYL85963
HPYL357544
HPY
HNEP81032 HNE_0480
HMUK485914
HMAR272569
HHEP235279
HHAL349124 HHAL_1196
HDUC233412 HD_1761
HBUT415426
HAUR316274 HAUR_2270
HARS204773 HEAR2771
HACI382638
GVIO251221
GOXY290633
GMET269799
GFOR411154 GFO_1158
GBET391165 GBCGDNIH1_0440
FTUL458234 FTA_1830
FTUL418136 FTW_0253
FTUL401614 FTN_1551
FTUL393115 FTF0162
FTUL393011 FTH_1666
FTUL351581 FTL_1727
FSUC59374
FSP1855
FSP106370
FRANT AMPD
FPHI484022 FPHI_1064
FNUC190304 FN0164
FNOD381764
FMAG334413
FJOH376686 FJOH_4944
FALN326424
ERUM302409
ERUM254945
ELIT314225 ELI_01195
EFAE226185
ECHA205920
ECAN269484
DSP255470
DSP216389
DRAD243230 DR_1905
DPSY177439
DOLE96561
DNOD246195 DNO_1202
DGEO319795
DETH243164
CVES412965
CTRA471473
CTRA471472
CTEP194439
CSUL444179
CRUT413404 RMAG_1042
CPRO264201
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPER289380 CPR_0301
CPEL335992 SAR11_0034
CMUR243161
CMIC443906
CMIC31964
CMET456442
CMAQ397948
CKOR374847
CJEJ407148
CJEJ360109
CJEJ354242
CJEJ195099
CJEJ192222
CJEI306537
CHUT269798
CHOM360107
CGLU196627
CFET360106
CFEL264202
CEFF196164
CDIP257309 DIP2081
CDES477974
CCUR360105
CCON360104
CCHL340177
CCAV227941
CBUR434922 COXBU7E912_1701
CBUR360115 COXBURSA331_A0488
CBUR227377 CBU_0379
CBLO291272
CBLO203907
CABO218497
BTUR314724
BTRI382640 BT_1904
BTHE226186
BSP376 BRADO5669
BSP107806
BQUI283165
BLON206672
BHER314723
BHEN283166 BH12510
BGAR290434
BFRA295405
BFRA272559
BCIC186490
BBUR224326
BBAC360095 BARBAKC583_0904
BBAC264462
BAPH372461
BAPH198804
BAFZ390236
AYEL322098
AVAR240292
AURANTIMONAS
ASP76114 EBA3910
ASP232721 AJS_3631
ASP1667 ARTH_0839
APLE434271 APJL_0331
APLE416269 APL_0316
APHA212042
APER272557
AORE350688
ANAE240017
AMAR329726
AMAR234826
ALAI441768
AFUL224325
AFER243159 AFE_0513
ADEH290397
ACRY349163 ACRY_2885
ACEL351607
ABUT367737
ABOR393595 ABO_0620
ABAC204669
AAVE397945 AAVE_0865
AAUR290340
AAEO224324


Organism features enriched in list (features available for 363 out of the 389 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Clusters 0.00027481717
Arrangment:Pairs 4.650e-649112
Disease:Gastroenteritis 0.0037274313
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 0.00514511111
Endospores:No 1.730e-11168211
Endospores:Yes 1.341e-111053
GC_Content_Range4:0-40 7.454e-12170213
GC_Content_Range4:40-60 0.0001146119224
GC_Content_Range4:60-100 0.000255273145
GC_Content_Range7:30-40 1.092e-10136166
GC_Content_Range7:50-60 1.397e-645107
GC_Content_Range7:60-70 0.000342667134
Genome_Size_Range5:0-2 2.785e-32151155
Genome_Size_Range5:2-4 3.612e-6147197
Genome_Size_Range5:4-6 1.265e-2953184
Genome_Size_Range5:6-10 8.746e-81247
Genome_Size_Range9:0-1 1.903e-62727
Genome_Size_Range9:1-2 9.536e-25124128
Genome_Size_Range9:2-3 4.239e-9101120
Genome_Size_Range9:4-5 4.646e-132896
Genome_Size_Range9:5-6 2.125e-122588
Genome_Size_Range9:6-8 2.936e-61038
Gram_Stain:Gram_Neg 1.960e-6181333
Habitat:Host-associated 0.0000668149206
Habitat:Multiple 3.805e-784178
Habitat:Specialized 0.00038974453
Habitat:Terrestrial 0.00366541231
Motility:No 3.165e-9123151
Motility:Yes 2.262e-13124267
Optimal_temp.:35-37 0.0000569113
Oxygen_Req:Anaerobic 0.002997375102
Oxygen_Req:Facultative 1.308e-699201
Pathogenic_in:Human 0.0015602117213
Shape:Coccus 2.447e-66982
Shape:Irregular_coccus 0.00027481717
Shape:Rod 3.050e-23161347
Shape:Sphere 0.00124301819
Shape:Spiral 0.00001353234
Temp._range:Hyperthermophilic 0.00020932223
Temp._range:Mesophilic 0.0002293279473



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)1491160.5415
GLUTAMINDEG-PWY (glutamine degradation I)1911350.5405
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951330.5130
PWY-6196 (serine racemization)102860.4884
GALACTITOLCAT-PWY (galactitol degradation)73690.4814
AST-PWY (arginine degradation II (AST pathway))120930.4681
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491480.4675
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491480.4675
PWY0-823 (arginine degradation III (arginine decarboxylase/agmatinase pathway))2451460.4639
PWY-6374 (vibriobactin biosynthesis)77690.4569
SERDEG-PWY (L-serine degradation)3491790.4504
GLUCARDEG-PWY (D-glucarate degradation I)1521060.4503
CHOLINE-BETAINE-ANA-PWY (choline degradation I)135980.4490
GLYCOCAT-PWY (glycogen degradation I)2461440.4473
GALACTARDEG-PWY (D-galactarate degradation I)1511050.4459
BETSYN-PWY (glycine betaine biosynthesis I (Gram-negative bacteria))138990.4456
GLUTDEG-PWY (glutamate degradation II)1941230.4422
GALACTCAT-PWY (D-galactonate degradation)104820.4418
4AMINOBUTMETAB-PWY (superpathway of 4-aminobutyrate degradation)2121300.4403
GLUCONSUPER-PWY (D-gluconate degradation)2291360.4360
PWY0-541 (cyclopropane fatty acid (CFA) biosynthesis)3001610.4335
GLYCOLATEMET-PWY (glycolate and glyoxylate degradation I)2701500.4286
PWY-5901 (2,3-dihydroxybenzoate biosynthesis)1851160.4176
PWY-561 (superpathway of glyoxylate cycle)1621060.4155
VALDEG-PWY (valine degradation I)2901550.4154
SULFATE-CYS-PWY (superpathway of sulfate assimilation and cysteine biosynthesis)3651780.4107
P344-PWY (acrylonitrile degradation)2101250.4099
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181280.4091
PWY0-862 (cis-dodecenoyl biosynthesis)3431710.4078
TREDEGLOW-PWY (trehalose degradation I (low osmolarity))121860.4032
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)1761100.4005
GLYOXYLATE-BYPASS (glyoxylate cycle)1691070.4000



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG11962   EG11088   EG10041   
G75460.9998420.9998640.998749
EG119620.9998650.998505
EG110880.998986
EG10041



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PAIRWISE BLAST SCORES:

  G7546   EG11962   EG11088   EG10041   
G75460.0f05.4e-202.0e-22-
EG119621.6e-180.0f05.1e-31-
EG110882.2e-211.5e-330.0f0-
EG10041---0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10041 EG11088 (centered at EG11088)
EG11962 (centered at EG11962)
G7546 (centered at G7546)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7546   EG11962   EG11088   EG10041   
232/623219/623217/623254/623
AAVE397945:0:Tyes---0
ABAU360910:0:Tyes-1430-0
ABOR393595:0:Tyes---0
ACAU438753:0:Tyes0003781
ACRY349163:8:Tyes---0
AEHR187272:0:Tyes2046204620460
AFER243159:0:Tyes---0
AHYD196024:0:Tyes0001
AMET293826:0:Tyes000-
APLE416269:0:Tyes---0
APLE434271:0:Tno---0
ASAL382245:5:Tyes1110
ASP1667:3:Tyes--0-
ASP232721:2:Tyes---0
ASP62928:0:Tyes0002211
ASP62977:0:Tyes4040400
ASP76114:2:Tyes---0
BABO262698:0:Tno000-
BABO262698:1:Tno---0
BAMB339670:2:Tno00--
BAMB339670:3:Tno--23600
BAMB398577:2:Tno00--
BAMB398577:3:Tno--21760
BAMY326423:0:Tyes000-
BANT260799:0:Tno000-
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