CANDIDATE ID: 1120

CANDIDATE ID: 1120

NUMBER OF GENES: 4
AVERAGE SCORE:    9.9935550e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    5.0000000e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7961 (feaB) (b1385)
   Products of gene:
     - PHENDEHYD-MONOMER (FeaB)
     - PHENDEHYD-CPLX (phenylacetaldehyde dehydrogenase)
       Reactions:
        NAD+ + phenylacetaldehyde + H2O  =  NADH + phenylacetate + 2 H+
         In pathways
         BENZCOA-PWY (BENZCOA-PWY)
         PWY-6071 (superpathway of phenylethylamine degradation)
         ANAPHENOXI-PWY (ANAPHENOXI-PWY)
         2PHENDEG-PWY (phenylethylamine degradation I)
         PWY-6318 (PWY-6318)
         PWY-6534 (PWY-6534)

- G6755 (ydcW) (b1444)
   Products of gene:
     - G6755-MONOMER (γ-aminobutyraldehyde dehydrogenase)
     - CPLX0-3641 (γ-aminobutyraldehyde dehydrogenase)
       Reactions:
        4-aminobutanal + NAD+ + H2O  ->  4-aminobutyrate + NADH + 2 H+
         In pathways
         ORNARGDEG-PWY (superpathway of arginine and ornithine degradation)
         ARGDEG-PWY (superpathway of arginine, putrescine, and 4-aminobutyrate degradation)
         ORNDEG-PWY (superpathway of ornithine degradation)
         PUTDEG-PWY (putrescine degradation I)
         PWY-3 (PWY-3)
         PWY-2 (PWY-2)

- EG10110 (betB) (betB)
   Products of gene:
     - BADH-MONOMER (BetB)
     - BADH-CPLX (betaine aldehyde dehydrogenase)
       Reactions:
        betaine aldehyde + NAD+ + H2O  ->  glycine betaine + NADH + 2 H+
         In pathways
         P542-PWY (P542-PWY)
         BETSYN-PWY (glycine betaine biosynthesis I (Gram-negative bacteria))
         PWY-3722 (PWY-3722)
         CHOLINE-BETAINE-ANA-PWY (CHOLINE-BETAINE-ANA-PWY)
         PWY1F-353 (PWY1F-353)

- EG10036 (puuC) (b1300)
   Products of gene:
     - ALDHDEHYDROG-MONOMER (γ-glutamyl-γ-aminobutyraldehyde dehydrogenase)
       Reactions:
        3-hydroxypropionaldehyde + NAD+ + H2O  ->  3-hydroxypropionate + NADH + 2 H+
        NAD(P)+ + gamma-glutamyl-gamma-aminobutyraldehyde + H2O  ->  4-(glutamylamino) butanoate + NAD(P)H + 2 H+
         In pathways
         ORNARGDEG-PWY (superpathway of arginine and ornithine degradation)
         ARGDEG-PWY (superpathway of arginine, putrescine, and 4-aminobutyrate degradation)
         ORNDEG-PWY (superpathway of ornithine degradation)
         PWY0-1221 (putrescine degradation II)



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ORGANISMS CONTAINING AT LEAST 3 GENES FROM THE GROUP:

Total number of orgs: 191
Effective number of orgs (counting one per cluster within 468 clusters): 123

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317583
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329533
YPES386656 ncbi Yersinia pestis Pestoides F3
YPES377628 ncbi Yersinia pestis Nepal5163
YPES360102 ncbi Yersinia pestis Antiqua3
YPES214092 ncbi Yersinia pestis CO923
XCAM487884 Xanthomonas campestris pv. paulliniae4
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-104
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80044
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339134
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3063
XAUT78245 ncbi Xanthobacter autotrophicus Py24
VVUL216895 ncbi Vibrio vulnificus CMCP63
VVUL196600 ncbi Vibrio vulnificus YJ0164
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106334
VEIS391735 ncbi Verminephrobacter eiseniae EF01-23
UMET351160 ncbi uncultured methanogenic archaeon RC-I3
TROS309801 ncbi Thermomicrobium roseum DSM 51593
TERY203124 ncbi Trichodesmium erythraeum IMS1014
SSP644076 Silicibacter sp. TrichCH4B4
SSP292414 ncbi Ruegeria sp. TM10403
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153053
SPRO399741 ncbi Serratia proteamaculans 5684
SPEA398579 ncbi Shewanella pealeana ATCC 7003453
SMEL266834 ncbi Sinorhizobium meliloti 10214
SHIGELLA ncbi Shigella flexneri 2a str. 2457T3
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14353
SFLE373384 ncbi Shigella flexneri 5 str. 84014
SFLE198214 ncbi Shigella flexneri 2a str. 3013
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23384
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122284
SEPI176279 ncbi Staphylococcus epidermidis RP62A4
SDEN318161 ncbi Shewanella denitrificans OS2173
SCO ncbi Streptomyces coelicolor A3(2)3
SBAL402882 ncbi Shewanella baltica OS1853
SAVE227882 ncbi Streptomyces avermitilis MA-46804
SAUR93062 ncbi Staphylococcus aureus aureus COL4
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83254
SAUR426430 ncbi Staphylococcus aureus aureus Newman4
SAUR418127 ncbi Staphylococcus aureus aureus Mu34
SAUR367830 Staphylococcus aureus aureus USA3004
SAUR359787 ncbi Staphylococcus aureus aureus JH14
SAUR359786 ncbi Staphylococcus aureus aureus JH94
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4764
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2524
SAUR273036 ncbi Staphylococcus aureus RF1224
SAUR196620 ncbi Staphylococcus aureus aureus MW24
SAUR158879 ncbi Staphylococcus aureus aureus N3154
SAUR158878 ncbi Staphylococcus aureus aureus Mu504
SARE391037 ncbi Salinispora arenicola CNS-2053
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99414
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170254
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170294
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.14
RSP357808 ncbi Roseiflexus sp. RS-14
RSP101510 ncbi Rhodococcus jostii RHA14
RSOL267608 ncbi Ralstonia solanacearum GMI10003
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332093
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111703
RPOM246200 ncbi Ruegeria pomeroyi DSS-34
RPAL316057 ncbi Rhodopseudomonas palustris BisB53
RMET266264 ncbi Ralstonia metallidurans CH344
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38414
REUT381666 ncbi Ralstonia eutropha H164
REUT264198 ncbi Ralstonia eutropha JMP1344
RETL347834 ncbi Rhizobium etli CFN 424
RCAS383372 ncbi Roseiflexus castenholzii DSM 139414
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30003
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a4
PSTU379731 ncbi Pseudomonas stutzeri A15014
PSP296591 ncbi Polaromonas sp. JS6663
PSP117 Pirellula sp.4
PPUT76869 ncbi Pseudomonas putida GB-14
PPUT351746 ncbi Pseudomonas putida F14
PPUT160488 ncbi Pseudomonas putida KT24404
PMEN399739 ncbi Pseudomonas mendocina ymp4
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO14
PFLU220664 ncbi Pseudomonas fluorescens Pf-54
PFLU216595 ncbi Pseudomonas fluorescens SBW254
PFLU205922 ncbi Pseudomonas fluorescens Pf0-14
PENT384676 ncbi Pseudomonas entomophila L484
PCRY335284 ncbi Psychrobacter cryohalolentis K53
PAER208964 ncbi Pseudomonas aeruginosa PAO14
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA144
OCAR504832 ncbi Oligotropha carboxidovorans OM54
OANT439375 ncbi Ochrobactrum anthropi ATCC 491884
NSP35761 Nocardioides sp.4
NOCE323261 ncbi Nitrosococcus oceani ATCC 197073
NFAR247156 ncbi Nocardia farcinica IFM 101524
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-14
MSP409 Methylobacterium sp.3
MSP400668 ncbi Marinomonas sp. MWYL14
MSP266779 ncbi Chelativorans sp. BNC13
MSP189918 ncbi Mycobacterium sp. KMS3
MSP164757 ncbi Mycobacterium sp. JLS4
MSP164756 ncbi Mycobacterium sp. MCS3
MSME246196 ncbi Mycobacterium smegmatis MC2 1554
MLOT266835 ncbi Mesorhizobium loti MAFF3030994
MAVI243243 ncbi Mycobacterium avium 1044
LSPH444177 ncbi Lysinibacillus sphaericus C3-414
LPNE400673 ncbi Legionella pneumophila Corby4
LPNE297246 ncbi Legionella pneumophila Paris4
LPNE297245 ncbi Legionella pneumophila Lens4
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 14
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)3
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)3
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785784
JSP290400 ncbi Jannaschia sp. CCS13
HWAL362976 ncbi Haloquadratum walsbyi DSM 167903
HMAR272569 ncbi Haloarcula marismortui ATCC 430494
HCHE349521 ncbi Hahella chejuensis KCTC 23963
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-24
GKAU235909 ncbi Geobacillus kaustophilus HTA4264
GBET391165 ncbi Granulibacter bethesdensis CGDNIH13
FSP1855 Frankia sp. EAN1pec4
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255863
FALN326424 ncbi Frankia alni ACN14a4
ECOO157 ncbi Escherichia coli O157:H7 EDL9334
ECOL83334 Escherichia coli O157:H74
ECOL585057 ncbi Escherichia coli IAI394
ECOL585056 ncbi Escherichia coli UMN0264
ECOL585055 ncbi Escherichia coli 559894
ECOL585034 ncbi Escherichia coli IAI14
ECOL481805 ncbi Escherichia coli ATCC 87394
ECOL469008 ncbi Escherichia coli BL21(DE3)4
ECOL439855 ncbi Escherichia coli SMS-3-54
ECOL413997 ncbi Escherichia coli B str. REL6064
ECOL409438 ncbi Escherichia coli SE114
ECOL331111 ncbi Escherichia coli E24377A4
ECOL316407 ncbi Escherichia coli K-12 substr. W31104
CVIO243365 ncbi Chromobacterium violaceum ATCC 124724
CSP78 Caulobacter sp.3
CSP501479 Citreicella sp. SE453
CSAL290398 ncbi Chromohalobacter salexigens DSM 30434
CPSY167879 ncbi Colwellia psychrerythraea 34H3
CPHY357809 ncbi Clostridium phytofermentans ISDg3
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80523
BXEN266265 ncbi Burkholderia xenovorans LB4004
BWEI315730 ncbi Bacillus weihenstephanensis KBAB44
BVIE269482 ncbi Burkholderia vietnamiensis G44
BTHU412694 ncbi Bacillus thuringiensis Al Hakam4
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-274
BTHA271848 ncbi Burkholderia thailandensis E2644
BSUI470137 ncbi Brucella suis ATCC 234454
BSUI204722 ncbi Brucella suis 13303
BSUB ncbi Bacillus subtilis subtilis 1684
BSP36773 Burkholderia sp.4
BPUM315750 ncbi Bacillus pumilus SAFR-0324
BPSE320373 ncbi Burkholderia pseudomallei 6684
BPSE320372 ncbi Burkholderia pseudomallei 1710b4
BPSE272560 ncbi Burkholderia pseudomallei K962434
BPET94624 Bordetella petrii3
BPER257313 ncbi Bordetella pertussis Tohama I4
BPAR257311 ncbi Bordetella parapertussis 128224
BOVI236 Brucella ovis3
BMEL359391 ncbi Brucella melitensis biovar Abortus 23084
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M3
BMAL320389 ncbi Burkholderia mallei NCTC 102474
BMAL320388 ncbi Burkholderia mallei SAVP14
BMAL243160 ncbi Burkholderia mallei ATCC 233444
BLIC279010 ncbi Bacillus licheniformis ATCC 145804
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1104
BHAL272558 ncbi Bacillus halodurans C-1254
BCLA66692 ncbi Bacillus clausii KSM-K164
BCER572264 ncbi Bacillus cereus 03BB1024
BCER405917 Bacillus cereus W4
BCER315749 ncbi Bacillus cytotoxicus NVH 391-984
BCER288681 ncbi Bacillus cereus E33L4
BCER226900 ncbi Bacillus cereus ATCC 145794
BCEN331272 ncbi Burkholderia cenocepacia HI24244
BCEN331271 ncbi Burkholderia cenocepacia AU 10544
BCAN483179 ncbi Brucella canis ATCC 233653
BBRO257310 ncbi Bordetella bronchiseptica RB504
BANT592021 ncbi Bacillus anthracis A02484
BANT568206 ncbi Bacillus anthracis CDC 6844
BANT261594 ncbi Bacillus anthracis Ames Ancestor4
BANT260799 ncbi Bacillus anthracis Sterne4
BAMY326423 ncbi Bacillus amyloliquefaciens FZB424
BAMB398577 ncbi Burkholderia ambifaria MC40-64
BAMB339670 ncbi Burkholderia ambifaria AMMD4
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9414
ASP62928 ncbi Azoarcus sp. BH724
ASP1667 Arthrobacter sp.3
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL033
APLE416269 ncbi Actinobacillus pleuropneumoniae L203
AHYD196024 Aeromonas hydrophila dhakensis4
ACRY349163 ncbi Acidiphilium cryptum JF-54
ACAU438753 ncbi Azorhizobium caulinodans ORS 5714
ABAU360910 ncbi Bordetella avium 197N3
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3454
AAUR290340 ncbi Arthrobacter aurescens TC14


Names of the homologs of the genes in the group in each of these orgs
  G7961   G6755   EG10110   EG10036   
YPSE349747 YPSIP31758_2830YPSIP31758_2830YPSIP31758_2830
YPSE273123 YPTB1196YPTB1196YPTB1196
YPES386656 YPDSF_2531YPDSF_2531YPDSF_2531
YPES377628 YPN_2835YPN_2835YPN_2835
YPES360102 YPA_1074YPA_1074YPA_1074
YPES214092 YPO1166YPO1166YPO1166
XCAM487884 XCC-B100_0794XCC-B100_0794XCC-B100_0794XCC-B100_0794
XCAM316273 XCAORF_3741XCAORF_3741XCAORF_3741XCAORF_3741
XCAM314565 XC_0761XC_0761XC_0761XC_0761
XCAM190485 XCC3403XCC3403XCC3403XCC3403
XAXO190486 XAC0719XAC0719XAC0719
XAUT78245 XAUT_2725XAUT_3273XAUT_2725XAUT_2725
VVUL216895 VV2_1687VV2_1687VV2_1687
VVUL196600 VVA0507VVA0507VVA0507VV1585
VPAR223926 VPA1113VPA1113VPA1113VP1777
VEIS391735 VEIS_4500VEIS_3304VEIS_2787
UMET351160 RCIX91RCIX91RCIX91
TROS309801 TRD_1825TRD_1825TRD_1825
TERY203124 TERY_2599TERY_2599TERY_2599TERY_2599
SSP644076 SCH4B_3559SCH4B_1868SCH4B_1868SCH4B_0620
SSP292414 TM1040_3321TM1040_1883TM1040_3713
SSAP342451 SSP0195SSP0195SSP0195
SPRO399741 SPRO_0985SPRO_3647SPRO_1514SPRO_2065
SPEA398579 SPEA_1008SPEA_1008SPEA_0937
SMEL266834 SMA2213SMC01656SMC00094SMA2213
SHIGELLA ALDHS1905ALDH
SHAE279808 SH0428SH0428SH0547
SFLE373384 SFV_1314SFV_1770SFV_0323SFV_1314
SFLE198214 AAN42916.1AAN43345.1AAN42916.1
SERY405948 SACE_4203SACE_5668SACE_4203SACE_4203
SEPI176280 SE_2166SE_2166SE_2166SE_2071
SEPI176279 SERP2177SERP2177SERP2177SERP2084
SDEN318161 SDEN_0714SDEN_0714SDEN_3034
SCO SCO1612SCO5657SCO4913
SBAL402882 SHEW185_1314SHEW185_1314SHEW185_1153
SAVE227882 SAV6726SAV2610SAV2592SAV3347
SAUR93062 SACOL2628SACOL2628SACOL2628SACOL0154
SAUR93061 SAOUHSC_02933SAOUHSC_02933SAOUHSC_02933SAOUHSC_00132
SAUR426430 NWMN_2510NWMN_2510NWMN_2510NWMN_0113
SAUR418127 SAHV_2597SAHV_2597SAHV_2597SAHV_0166
SAUR367830 SAUSA300_2546SAUSA300_2546SAUSA300_2546SAUSA300_0170
SAUR359787 SAURJH1_2689SAURJH1_2689SAURJH1_2689SAURJH1_0158
SAUR359786 SAURJH9_2635SAURJH9_2635SAURJH9_2635SAURJH9_0153
SAUR282459 SAS2498SAS2498SAS2498SAS0142
SAUR282458 SAR2691SAR2691SAR2691SAR0169
SAUR273036 SAB2487CSAB2487CSAB2487CSAB0108
SAUR196620 MW2532MW2532MW2532MW0142
SAUR158879 SA2406SA2406SA2406SA0162
SAUR158878 SAV2613SAV2613SAV2613SAV0167
SARE391037 SARE_1625SARE_1625SARE_1625
RXYL266117 RXYL_3194RXYL_2917RXYL_1561RXYL_1561
RSPH349102 RSPH17025_2311RSPH17025_2311RSPH17025_2311RSPH17025_2836
RSPH349101 RSPH17029_0855RSPH17029_0855RSPH17029_0855RSPH17029_3176
RSPH272943 RSP_4003RSP_2183RSP_2183RSP_3533
RSP357808 ROSERS_0265ROSERS_0265ROSERS_0265ROSERS_0265
RSP101510 RHA1_RO02610RHA1_RO05599RHA1_RO08090RHA1_RO01791
RSOL267608 RSC2110RSC3128RSC2110
RSAL288705 RSAL33209_0599RSAL33209_2605RSAL33209_1504
RRUB269796 RRU_A0298RRU_A0298RRU_A0298
RPOM246200 SPO_A0112SPO_A0112SPO_0084SPO_A0377
RPAL316057 RPD_0049RPD_0049RPD_0049
RMET266264 RMET_4856RMET_4856RMET_4856RMET_1623
RLEG216596 PRL120529RL4194RL1271PRL120529
REUT381666 H16_B1939H16_B1939H16_B1939H16_B1939
REUT264198 REUT_B4074REUT_B3577REUT_B5498REUT_B4074
RETL347834 RHE_PF00397RHE_CH03664RHE_CH01137RHE_PF00397
RCAS383372 RCAS_0272RCAS_0272RCAS_0272RCAS_0272
PSYR223283 PSPTO_3064PSPTO_0441PSPTO_0092
PSYR205918 PSYR_2407PSYR_4733PSYR_4733PSYR_0227
PSTU379731 PST_1745PST_1745PST_1745PST_0046
PSP296591 BPRO_3685BPRO_5132BPRO_0055
PSP117 RB10172RB10172RB10172RB10172
PPUT76869 PPUTGB1_2225PPUTGB1_1087PPUTGB1_5114PPUTGB1_5330
PPUT351746 PPUT_2306PPUT_4240PPUT_4936PPUT_5188
PPUT160488 PP_3463PP_2801PP_5063PP_5278
PMEN399739 PMEN_0482PMEN_0482PMEN_0482PMEN_0237
PLUM243265 PLU4285PLU2349PLU0142PLU0142
PFLU220664 PFL_3217PFL_3217PFL_5767PFL_6046
PFLU216595 PFLU3291PFLU1214PFLU5685PFLU5976
PFLU205922 PFL_1049PFL_1049PFL_5243PFL_5534
PENT384676 PSEEN3107PSEEN1238PSEEN0373PSEEN5424
PCRY335284 PCRYO_0873PCRYO_0873PCRYO_1216
PAER208964 PA4073PA5373PA5373PA5312
PAER208963 PA14_11190PA14_35880PA14_70950PA14_70140
OCAR504832 OCAR_5100OCAR_4993OCAR_5100OCAR_5100
OANT439375 OANT_2710OANT_2792OANT_2710OANT_4697
NSP35761 NOCA_0846NOCA_3222NOCA_0846NOCA_0846
NOCE323261 NOC_2605NOC_2605NOC_2605
NFAR247156 NFA12040NFA12730NFA12040NFA12040
MVAN350058 MVAN_0014MVAN_2580MVAN_0014MVAN_0352
MSP409 M446_3859M446_3859M446_3859
MSP400668 MMWYL1_4031MMWYL1_0517MMWYL1_4080MMWYL1_3527
MSP266779 MESO_3589MESO_0825MESO_0566
MSP189918 MKMS_4738MKMS_2320MKMS_2657
MSP164757 MJLS_5033MJLS_2312MJLS_4075MJLS_4075
MSP164756 MMCS_4650MMCS_2273MMCS_2613
MSME246196 MSMEG_1665MSMEG_1665MSMEG_6297MSMEG_6297
MLOT266835 MLL2319MLR5385MLL7608MLL2319
MAVI243243 MAV_2765MAV_2765MAV_2608MAV_1897
LSPH444177 BSPH_0114BSPH_0114BSPH_0114BSPH_1812
LPNE400673 LPC_0314LPC_0314LPC_0314LPC_0314
LPNE297246 LPP0308LPP0308LPP0308LPP0308
LPNE297245 LPL0292LPL0292LPL0292LPL0292
LPNE272624 LPG0238LPG0238LPG0238LPG0238
LBIF456481 LEPBI_I2656LEPBI_I2656LEPBI_I2656
LBIF355278 LBF_2575LBF_2575LBF_2575
KPNE272620 GKPORF_B0437GKPORF_B1019GKPORF_B5003GKPORF_B5457
JSP290400 JANN_3829JANN_1493JANN_3507
HWAL362976 HQ1972AHQ1972AHQ1972A
HMAR272569 RRNAC0201RRNAC0201RRNAC0201RRNB0092
HCHE349521 HCH_00850HCH_00850HCH_03162
GTHE420246 GTNG_1922GTNG_1922GTNG_1899GTNG_3154
GKAU235909 GK2772GK2037GK0199GK2000
GBET391165 GBCGDNIH1_1608GBCGDNIH1_1608GBCGDNIH1_1608
FSP1855 FRANEAN1_6857FRANEAN1_0951FRANEAN1_6857FRANEAN1_6857
FNUC190304 FN0454FN0454FN0454
FALN326424 FRAAL0200FRAAL6022FRAAL0200FRAAL0200
ECOO157 ALDHZ2275BETBALDH
ECOL83334 ECS1877ECS2048ECS0358ECS1877
ECOL585057 ECIAI39_1651ECIAI39_0374ECIAI39_0374ECIAI39_1651
ECOL585056 ECUMN_1606ECUMN_1692ECUMN_0350ECUMN_1606
ECOL585055 EC55989_1521EC55989_1576EC55989_0314EC55989_1462
ECOL585034 ECIAI1_1385ECIAI1_1440ECIAI1_0309ECIAI1_1325
ECOL481805 ECOLC_2270ECOLC_2215ECOLC_3311ECOLC_2325
ECOL469008 ECBD_2238ECBD_2195ECBD_3346ECBD_2317
ECOL439855 ECSMS35_1822ECSMS35_1729ECSMS35_0343ECSMS35_1822
ECOL413997 ECB_01357ECB_01401ECB_00268ECB_01277
ECOL409438 ECSE_1470ECSE_1526ECSE_0333ECSE_1352
ECOL331111 ECE24377A_1570ECE24377A_1624ECE24377A_0327ECE24377A_1510
ECOL316407 ECK1382:JW1380:B1385ECK1438:JW1439:B1444ECK0310:JW0304:B0312ECK1295:JW1293:B1300
CVIO243365 CV_1222CV_3927CV_1222CV_2019
CSP78 CAUL_3244CAUL_3955CAUL_3955
CSP501479 CSE45_4358CSE45_4358CSE45_0756
CSAL290398 CSAL_1515CSAL_1515CSAL_1515CSAL_1187
CPSY167879 CPS_2053CPS_4011CPS_2053
CPHY357809 CPHY_0958CPHY_0958CPHY_0958
CBEI290402 CBEI_0729CBEI_0729CBEI_4936
BXEN266265 BXE_B0108BXE_B1591BXE_B1591BXE_B0945
BWEI315730 BCERKBAB4_3257BCERKBAB4_2634BCERKBAB4_3257BCERKBAB4_3257
BVIE269482 BCEP1808_3430BCEP1808_3430BCEP1808_3430BCEP1808_3076
BTHU412694 BALH_3195BALH_2540BALH_3195BALH_3195
BTHU281309 BT9727_3313BT9727_2591BT9727_3313BT9727_3313
BTHA271848 BTH_II1537BTH_II2092BTH_II1073BTH_II1942
BSUI470137 BSUIS_B1384BSUIS_B1120BSUIS_A0580BSUIS_B1401
BSUI204722 BR_1640BR_0552BR_A1171
BSUB BSU19310BSU19310BSU19310BSU19310
BSP36773 BCEP18194_B0933BCEP18194_C7700BCEP18194_B0554BCEP18194_A6339
BPUM315750 BPUM_1857BPUM_1857BPUM_1857BPUM_1857
BPSE320373 BURPS668_A1274BURPS668_A0531BURPS668_A1924BURPS668_A0734
BPSE320372 BURPS1710B_B2897BURPS1710B_B2183BURPS1710B_B0452BURPS1710B_B2375
BPSE272560 BPSS0868BPSS0307BPSS1354BPSS0473
BPET94624 BPET4702BPET4702BPET2339
BPER257313 BP2303BP2303BP2303BP2303
BPAR257311 BPP2426BPP4379BPP2426BPP1569
BOVI236 GBOORF0578GBOORF0578GBOORFA1169
BMEL359391 BAB2_1114BAB1_1655BAB1_0576BAB2_1130
BMEL224914 BMEI1382BMEI1382BMEII0135
BMAL320389 BMA10247_A0943BMA10247_A0846BMA10247_A1427BMA10247_2715
BMAL320388 BMASAVP1_0348BMASAVP1_0467BMASAVP1_0467BMASAVP1_A3290
BMAL243160 BMA_A1365BMA_A1451BMA_A0915BMA_2663
BLIC279010 BL00585BL00585BL00585BL00585
BJAP224911 BLL7607BLL6322BLR3776BLR3776
BHAL272558 BH0539BH0539BH0539BH0539
BCLA66692 ABC0047ABC0047ABC0047ABC0047
BCER572264 BCA_3648BCA_2912BCA_3648BCA_3648
BCER405917 BCE_3569BCE_2860BCE_3569BCE_3569
BCER315749 BCER98_2229BCER98_1476BCER98_2229BCER98_1480
BCER288681 BCE33L3263BCE33L2556BCE33L3263BCE33L3263
BCER226900 BC_3555BC_2832BC_3555BC_2832
BCEN331272 BCEN2424_4781BCEN2424_3431BCEN2424_5099BCEN2424_2990
BCEN331271 BCEN_3586BCEN_3269BCEN_3269BCEN_2376
BCAN483179 BCAN_A1683BCAN_A0564BCAN_B1202
BBRO257310 BB1875BB4965BB1875BB2647
BANT592021 BAA_3638BAA_2893BAA_3638BAA_3638
BANT568206 BAMEG_1021BAMEG_1765BAMEG_1021BAMEG_1021
BANT261594 GBAA3609GBAA2831GBAA3609GBAA3609
BANT260799 BAS3348BAS2640BAS3348BAS3348
BAMY326423 RBAM_019060RBAM_019060RBAM_019060RBAM_019060
BAMB398577 BAMMC406_4688BAMMC406_3376BAMMC406_5036BAMMC406_3376
BAMB339670 BAMB_4164BAMB_5214BAMB_4511BAMB_3037
BABO262698 BRUAB2_1092BRUAB1_1628BRUAB1_0574BRUAB2_1107
ASP62928 AZO2250AZO2250AZO2250AZO3021
ASP1667 ARTH_3095ARTH_3522ARTH_3522
APLE434271 APJL_2061APJL_2061APJL_2061
APLE416269 APL_2011APL_2011APL_2011
AHYD196024 AHA_3818AHA_3818AHA_0243AHA_0243
ACRY349163 ACRY_0990ACRY_2390ACRY_0990ACRY_0990
ACAU438753 AZC_1184AZC_3948AZC_1184AZC_1184
ABAU360910 BAV2204BAV2204BAV2204
ABAC204669 ACID345_1381ACID345_1381ACID345_1381ACID345_1381
AAUR290340 AAUR_PTC10063AAUR_4011AAUR_0513AAUR_0581


Organism features enriched in list (features available for 175 out of the 191 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Clusters 6.564e-71517
Arrangment:Filaments 0.0085798710
Arrangment:Pairs 0.009369243112
Disease:Anthrax 0.007924444
Disease:Brucellosis 0.002340455
Disease:Legionnaire's_disease 0.007924444
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 1.422e-61111
Endospores:No 0.000019042211
Endospores:Yes 0.00110322653
GC_Content_Range4:0-40 8.626e-739213
GC_Content_Range4:60-100 1.864e-1278145
GC_Content_Range7:0-30 5.545e-6247
GC_Content_Range7:30-40 0.002794437166
GC_Content_Range7:40-50 0.006352025117
GC_Content_Range7:60-70 2.636e-1172134
Genome_Size_Range5:2-4 0.005090447197
Genome_Size_Range5:4-6 2.083e-1190184
Genome_Size_Range5:6-10 6.078e-143847
Genome_Size_Range9:2-3 0.000234421120
Genome_Size_Range9:5-6 1.066e-105388
Genome_Size_Range9:6-8 1.258e-113138
Genome_Size_Range9:8-10 0.003639079
Habitat:Aquatic 0.00155161691
Habitat:Terrestrial 0.00015891931
Motility:Yes 0.000689297267
Optimal_temp.:25-30 0.00042031319
Optimal_temp.:30-37 0.00002671418
Optimal_temp.:37 0.000827519106
Oxygen_Req:Aerobic 0.000515372185
Oxygen_Req:Anaerobic 3.063e-152102
Oxygen_Req:Facultative 0.002700674201
Pathogenic_in:Animal 0.00091533166
Pathogenic_in:No 0.009792357226
Shape:Branched_filament 0.007924444
Shape:Rod 1.598e-6129347
Shape:Spiral 0.0020641334
Temp._range:Mesophilic 0.0032969153473



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 384
Effective number of orgs (counting one per cluster within 468 clusters): 311

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM40
YPES349746 ncbi Yersinia pestis Angola1
YPES187410 ncbi Yersinia pestis KIM 101
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80810
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A0
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110180
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103310
XFAS405440 ncbi Xylella fastidiosa M120
XFAS183190 ncbi Xylella fastidiosa Temecula10
XFAS160492 ncbi Xylella fastidiosa 9a5c0
WSUC273121 ncbi Wolinella succinogenes DSM 17400
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
VFIS312309 ncbi Vibrio fischeri ES1140
VCHO345073 ncbi Vibrio cholerae O3950
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169610
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTUR377629 ncbi Teredinibacter turnerae T79010
TTHE262724 ncbi Thermus thermophilus HB271
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB40
TSP28240 Thermotoga sp.0
TSP1755 Thermoanaerobacter sp.0
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332230
TPET390874 ncbi Thermotoga petrophila RKU-10
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TMAR243274 ncbi Thermotoga maritima MSB80
TLET416591 ncbi Thermotoga lettingae TMO0
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TELO197221 ncbi Thermosynechococcus elongatus BP-10
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12510
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252590
TDEN243275 ncbi Treponema denticola ATCC 354050
TCRU317025 ncbi Thiomicrospira crunogena XCL-20
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen0
STOK273063 ncbi Sulfolobus tokodaii 70
STHE322159 ncbi Streptococcus thermophilus LMD-90
STHE299768 ncbi Streptococcus thermophilus CNRZ10660
STHE292459 ncbi Symbiobacterium thermophilum IAM 148631
STHE264199 ncbi Streptococcus thermophilus LMG 183110
SSUI391296 ncbi Streptococcus suis 98HAH330
SSUI391295 ncbi Streptococcus suis 05ZYH330
SSP94122 ncbi Shewanella sp. ANA-31
SSP84588 ncbi Synechococcus sp. WH 81020
SSP64471 ncbi Synechococcus sp. CC93110
SSP387093 ncbi Sulfurovum sp. NBC37-10
SSP1148 ncbi Synechocystis sp. PCC 68030
SSP1131 Synechococcus sp. CC96050
SSOL273057 ncbi Sulfolobus solfataricus P20
SRUB309807 ncbi Salinibacter ruber DSM 138550
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370552 ncbi Streptococcus pyogenes MGAS102700
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103940
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SPNE488221 ncbi Streptococcus pneumoniae 705850
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-60
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-140
SPNE171101 ncbi Streptococcus pneumoniae R60
SPNE170187 ncbi Streptococcus pneumoniae G540
SPNE1313 Streptococcus pneumoniae0
SONE211586 ncbi Shewanella oneidensis MR-11
SMUT210007 ncbi Streptococcus mutans UA1590
SMAR399550 ncbi Staphylothermus marinus F10
SLAC55218 Ruegeria lacuscaerulensis1
SGOR29390 Streptococcus gordonii Challis0
SGLO343509 ncbi Sodalis glossinidius morsitans0
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB0
SELO269084 ncbi Synechococcus elongatus PCC 63010
SDYS300267 ncbi Shigella dysenteriae Sd1971
SDEG203122 ncbi Saccharophagus degradans 2-400
SALA317655 ncbi Sphingopyxis alaskensis RB22561
SAGA211110 ncbi Streptococcus agalactiae NEM3160
SAGA208435 ncbi Streptococcus agalactiae 2603V/R0
SAGA205921 ncbi Streptococcus agalactiae A9090
SACI56780 ncbi Syntrophus aciditrophicus SB0
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RTYP257363 ncbi Rickettsia typhi Wilmington0
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RPAL316058 ncbi Rhodopseudomonas palustris HaA21
RPAL316056 ncbi Rhodopseudomonas palustris BisB181
RPAL316055 ncbi Rhodopseudomonas palustris BisA530
RPAL258594 ncbi Rhodopseudomonas palustris CGA0091
RMAS416276 ncbi Rickettsia massiliae MTU50
RFEL315456 ncbi Rickettsia felis URRWXCal20
RDEN375451 ncbi Roseobacter denitrificans OCh 1141
RCON272944 ncbi Rickettsia conorii Malish 70
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RALB246199 Ruminococcus albus 80
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97900
PTHE370438 ncbi Pelotomaculum thermopropionicum SI0
PSP56811 Psychrobacter sp.0
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-10
PRUM264731 ncbi Prevotella ruminicola 230
PPRO298386 ncbi Photobacterium profundum SS91
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257450
PNAP365044 ncbi Polaromonas naphthalenivorans CJ20
PMUL272843 ncbi Pasteurella multocida multocida Pm701
PMOB403833 ncbi Petrotoga mobilis SJ950
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74547 ncbi Prochlorococcus marinus MIT 93130
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR59920 ncbi Prochlorococcus marinus NATL2A0
PMAR167555 ncbi Prochlorococcus marinus NATL1A0
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13750
PMAR146891 ncbi Prochlorococcus marinus AS96010
PLUT319225 ncbi Chlorobium luteolum DSM 2730
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 170
PING357804 ncbi Psychromonas ingrahamii 371
PHOR70601 ncbi Pyrococcus horikoshii OT30
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1251
PGIN242619 ncbi Porphyromonas gingivalis W830
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PDIS435591 ncbi Parabacteroides distasonis ATCC 85030
PCAR338963 ncbi Pelobacter carbinolicus DSM 23800
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PAER178306 ncbi Pyrobaculum aerophilum IM20
PACN267747 ncbi Propionibacterium acnes KPA1712020
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2550
NSP387092 ncbi Nitratiruptor sp. SB155-20
NSP103690 ncbi Nostoc sp. PCC 71200
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
NMUL323848 ncbi Nitrosospira multiformis ATCC 251960
NMEN374833 ncbi Neisseria meningitidis 0534420
NMEN272831 ncbi Neisseria meningitidis FAM180
NMEN122587 ncbi Neisseria meningitidis Z24910
NMEN122586 ncbi Neisseria meningitidis MC580
NHAM323097 ncbi Nitrobacter hamburgensis X140
NGON242231 ncbi Neisseria gonorrhoeae FA 10900
NEUT335283 ncbi Nitrosomonas eutropha C910
NEUR228410 ncbi Nitrosomonas europaea ATCC 197180
MXAN246197 ncbi Myxococcus xanthus DK 16221
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra1
MTUB336982 ncbi Mycobacterium tuberculosis F111
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE264732 ncbi Moorella thermoacetica ATCC 390730
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MTBRV ncbi Mycobacterium tuberculosis H37Rv1
MTBCDC ncbi Mycobacterium tuberculosis CDC15511
MSYN262723 ncbi Mycoplasma synoviae 530
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E1
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPET420662 ncbi Methylibium petroleiphilum PM11
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go11
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR394221 ncbi Maricaulis maris MCS100
MMAR368407 ncbi Methanoculleus marisnigri JR11
MMAR267377 ncbi Methanococcus maripaludis S20
MMAG342108 ncbi Magnetospirillum magneticum AMB-11
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MFLA265072 ncbi Methylobacillus flagellatus KT0
MEXT419610 ncbi Methylobacterium extorquens PA10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MCAP243233 ncbi Methylococcus capsulatus Bath0
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P21
MBOV233413 ncbi Mycobacterium bovis AF2122/971
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAQU351348 ncbi Marinobacter aquaeolei VT81
MAER449447 ncbi Microcystis aeruginosa NIES-8430
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
LXYL281090 ncbi Leifsonia xyli xyli CTCB071
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53340
LSAK314315 ncbi Lactobacillus sakei sakei 23K0
LREU557436 ncbi Lactobacillus reuteri DSM 200160
LPLA220668 ncbi Lactobacillus plantarum WCFS10
LMON265669 ncbi Listeria monocytogenes 4b F23651
LMON169963 ncbi Listeria monocytogenes EGD-e1
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82930
LLAC272623 ncbi Lactococcus lactis lactis Il14030
LLAC272622 ncbi Lactococcus lactis cremoris SK110
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-000
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1300
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566010
LINN272626 ncbi Listeria innocua Clip112621
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LCHO395495 ncbi Leptothrix cholodnii SP-61
LCAS321967 ncbi Lactobacillus casei ATCC 3340
LBRE387344 ncbi Lactobacillus brevis ATCC 3670
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1970
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5500
LACI272621 ncbi Lactobacillus acidophilus NCFM0
JSP375286 ncbi Janthinobacterium sp. Marseille0
ILOI283942 ncbi Idiomarina loihiensis L2TR0
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HSP64091 ncbi Halobacterium sp. NRC-10
HSOM228400 ncbi Haemophilus somnus 23360
HSOM205914 ncbi Haemophilus somnus 129PT0
HSAL478009 ncbi Halobacterium salinarum R10
HPYL85963 ncbi Helicobacter pylori J990
HPYL357544 ncbi Helicobacter pylori HPAG10
HPY ncbi Helicobacter pylori 266950
HNEP81032 Hyphomonas neptunium0
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMOD498761 ncbi Heliobacterium modesticaldum Ice10
HINF71421 ncbi Haemophilus influenzae Rd KW200
HINF374930 ncbi Haemophilus influenzae PittEE0
HINF281310 ncbi Haemophilus influenzae 86-028NP0
HHEP235279 ncbi Helicobacter hepaticus ATCC 514490
HHAL349124 ncbi Halorhodospira halophila SL10
HDUC233412 ncbi Haemophilus ducreyi 35000HP0
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HARS204773 ncbi Herminiimonas arsenicoxydans0
HACI382638 ncbi Helicobacter acinonychis Sheeba0
GVIO251221 ncbi Gloeobacter violaceus PCC 74210
GURA351605 ncbi Geobacter uraniireducens Rf40
GSUL243231 ncbi Geobacter sulfurreducens PCA0
GOXY290633 ncbi Gluconobacter oxydans 621H0
GMET269799 ncbi Geobacter metallireducens GS-150
GFOR411154 ncbi Gramella forsetii KT08030
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-000
FTUL418136 ncbi Francisella tularensis tularensis WY96-34180
FTUL401614 ncbi Francisella novicida U1120
FTUL393115 ncbi Francisella tularensis tularensis FSC1980
FTUL393011 ncbi Francisella tularensis holarctica OSU180
FTUL351581 Francisella tularensis holarctica FSC2000
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S850
FSP106370 ncbi Frankia sp. CcI31
FRANT ncbi Francisella tularensis tularensis SCHU S40
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250170
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B10
FMAG334413 ncbi Finegoldia magna ATCC 293280
FJOH376686 ncbi Flavobacterium johnsoniae UW1010
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ELIT314225 ncbi Erythrobacter litoralis HTCC25940
ECOL585397 ncbi Escherichia coli ED1a1
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough0
DSP255470 ncbi Dehalococcoides sp. CBDB10
DSP216389 ncbi Dehalococcoides sp. BAV10
DSHI398580 ncbi Dinoroseobacter shibae DFL 120
DRED349161 ncbi Desulfotomaculum reducens MI-10
DRAD243230 ncbi Deinococcus radiodurans R10
DPSY177439 ncbi Desulfotalea psychrophila LSv540
DOLE96561 ncbi Desulfococcus oleovorans Hxd30
DNOD246195 ncbi Dichelobacter nodosus VCS1703A0
DHAF138119 ncbi Desulfitobacterium hafniense Y510
DGEO319795 ncbi Deinococcus geothermalis DSM 113001
DETH243164 ncbi Dehalococcoides ethenogenes 1950
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G200
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA0
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTET212717 ncbi Clostridium tetani E880
CTEP194439 ncbi Chlorobium tepidum TLS0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE250
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPER289380 ncbi Clostridium perfringens SM1010
CPER195103 ncbi Clostridium perfringens ATCC 131240
CPER195102 ncbi Clostridium perfringens 130
CNOV386415 ncbi Clostridium novyi NT0
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3820
CMIC31964 ncbi Clavibacter michiganensis sepedonicus0
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CKLU431943 ncbi Clostridium kluyveri DSM 5550
CJEJ407148 ncbi Campylobacter jejuni jejuni 811160
CJEJ360109 ncbi Campylobacter jejuni doylei 269.970
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1760
CJEJ195099 ncbi Campylobacter jejuni RM12210
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111680
CJEI306537 ncbi Corynebacterium jeikeium K4110
CJAP155077 Cellvibrio japonicus0
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29010
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334060
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130320
CFET360106 ncbi Campylobacter fetus fetus 82-400
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CEFF196164 ncbi Corynebacterium efficiens YS-3140
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131290
CDIF272563 ncbi Clostridium difficile 6300
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C0
CCHL340177 ncbi Chlorobium chlorochromatii CaD30
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1110
CBUR360115 ncbi Coxiella burnetii RSA 3310
CBUR227377 ncbi Coxiella burnetii RSA 4930
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto0
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6570
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B0
CBOT498213 ncbi Clostridium botulinum B1 str. Okra0
CBOT441772 ncbi Clostridium botulinum F str. Langeland0
CBOT441771 ncbi Clostridium botulinum A str. Hall0
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193970
CBOT36826 Clostridium botulinum A0
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN0
CBLO203907 ncbi Candidatus Blochmannia floridanus0
CACE272562 ncbi Clostridium acetobutylicum ATCC 8240
CABO218497 ncbi Chlamydophila abortus S26/30
BTUR314724 ncbi Borrelia turicatae 91E1350
BTRI382640 ncbi Bartonella tribocorum CIP 1054760
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54820
BSP376 Bradyrhizobium sp.1
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)0
BQUI283165 ncbi Bartonella quintana Toulouse0
BLON206672 ncbi Bifidobacterium longum NCC27050
BHER314723 ncbi Borrelia hermsii DAH0
BHEN283166 ncbi Bartonella henselae Houston-10
BGAR290434 ncbi Borrelia garinii PBi0
BFRA295405 ncbi Bacteroides fragilis YCH460
BFRA272559 ncbi Bacteroides fragilis NCTC 93430
BCIC186490 Candidatus Baumannia cicadellinicola0
BBUR224326 ncbi Borrelia burgdorferi B310
BBAC360095 ncbi Bartonella bacilliformis KC5830
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1000
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)0
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AVAR240292 ncbi Anabaena variabilis ATCC 294130
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP76114 ncbi Aromatoleum aromaticum EbN10
ASP232721 ncbi Acidovorax sp. JS421
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K10
AORE350688 ncbi Alkaliphilus oremlandii OhILAs0
ANAE240017 Actinomyces oris MG11
AMET293826 ncbi Alkaliphilus metalliredigens QYMF1
AMAR329726 ncbi Acaryochloris marina MBIC110170
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232700
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-10
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C0
ABUT367737 ncbi Arcobacter butzleri RM40180
ABOR393595 ncbi Alcanivorax borkumensis SK20
AAVE397945 ncbi Acidovorax citrulli AAC00-10
AAEO224324 ncbi Aquifex aeolicus VF50


Names of the homologs of the genes in the group in each of these orgs
  G7961   G6755   EG10110   EG10036   
ZMOB264203
YPES349746 YPANGOLA_A1516
YPES187410 Y2894
YENT393305
XORY360094
XORY342109
XORY291331
XFAS405440
XFAS183190
XFAS160492
WSUC273121
WPIP955
WPIP80849
VFIS312309
VCHO345073
VCHO
UURE95667
UURE95664
UPAR505682
TWHI218496
TWHI203267
TVOL273116
TTUR377629
TTHE262724 TT_C0593
TTEN273068
TSP28240
TSP1755
TPSE340099
TPET390874
TPEN368408
TPAL243276
TMAR243274
TLET416591
TKOD69014
TELO197221
TDEN326298
TDEN292415
TDEN243275
TCRU317025
TACI273075
SWOL335541
STOK273063
STHE322159
STHE299768
STHE292459 STH722
STHE264199
SSUI391296
SSUI391295
SSP94122 SHEWANA3_3105
SSP84588
SSP64471
SSP387093
SSP1148
SSP1131
SSOL273057
SRUB309807
SPYO370554
SPYO370553
SPYO370552
SPYO370551
SPYO319701
SPYO293653
SPYO286636
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SPNE488221
SPNE487214
SPNE487213
SPNE171101
SPNE170187
SPNE1313
SONE211586 SO_3496
SMUT210007
SMAR399550
SLAC55218 SL1157_1252
SGOR29390
SGLO343509
SFUM335543
SELO269084
SDYS300267 SDY_1730
SDEG203122
SALA317655 SALA_2454
SAGA211110
SAGA208435
SAGA205921
SACI56780
SACI330779
RTYP257363
RRIC452659
RRIC392021
RPRO272947
RPAL316058 RPB_3136
RPAL316056 RPC_3493
RPAL316055
RPAL258594 RPA2324
RMAS416276
RFEL315456
RDEN375451 RD1_2023
RCON272944
RCAN293613
RBEL391896
RBEL336407
RALB246199
RAKA293614
PTOR263820
PTHE370438
PSP56811
PSP312153
PRUM264731
PPRO298386 PBPRB1746
PPEN278197
PNAP365044
PMUL272843 PM1536
PMOB403833
PMAR93060
PMAR74547
PMAR74546
PMAR59920
PMAR167555
PMAR167546
PMAR167542
PMAR167540
PMAR167539
PMAR146891
PLUT319225
PISL384616
PINT246198
PING357804 PING_2071
PHOR70601
PHAL326442 PSHAB0419
PGIN242619
PFUR186497
PDIS435591
PCAR338963
PAST100379
PARS340102
PAER178306
PACN267747
PABY272844
OTSU357244
NWIN323098
NSP387092
NSP103690
NSEN222891
NPHA348780
NMUL323848
NMEN374833
NMEN272831
NMEN122587
NMEN122586
NHAM323097
NGON242231
NEUT335283
NEUR228410
MXAN246197 MXAN_0921
MTUB419947 MRA_2883
MTUB336982 TBFG_12874
MTHE349307
MTHE264732
MTHE187420
MTBRV RV2858C
MTBCDC MT2926
MSYN262723
MSUC221988 MS1551
MSTA339860
MSED399549
MPUL272635
MPNE272634
MPET420662 MPE_A1909
MPEN272633
MMYC272632
MMOB267748
MMAZ192952 MM0048
MMAR444158
MMAR426368
MMAR402880
MMAR394221
MMAR368407 MEMAR_1201
MMAR267377
MMAG342108 AMB1321
MLEP272631
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGEN243273
MFLO265311
MFLA265072
MEXT419610
MCAP340047
MCAP243233
MBUR259564
MBOV410289 BCG_2880C
MBOV233413 MB2883C
MART243272
MAQU351348 MAQU_3841
MAER449447
MAEO419665
LXYL281090 LXX12010
LWEL386043
LSAK314315
LREU557436
LPLA220668
LMON265669 LMOF2365_0935
LMON169963 LMO0913
LMES203120
LLAC272623
LLAC272622
LJOH257314
LINT363253
LINT267671
LINT189518
LINN272626 LIN0913
LHEL405566
LGAS324831
LDEL390333
LDEL321956
LCHO395495 LCHO_1737
LCAS321967
LBRE387344
LBOR355277
LBOR355276
LACI272621
JSP375286
ILOI283942
IHOS453591
HSP64091
HSOM228400
HSOM205914
HSAL478009
HPYL85963
HPYL357544
HPY
HNEP81032
HMUK485914
HMOD498761
HINF71421
HINF374930
HINF281310
HHEP235279
HHAL349124
HDUC233412
HBUT415426
HARS204773
HACI382638
GVIO251221
GURA351605
GSUL243231
GOXY290633
GMET269799
GFOR411154
FTUL458234
FTUL418136
FTUL401614
FTUL393115
FTUL393011
FTUL351581
FSUC59374
FSP106370 FRANCCI3_3777
FRANT
FPHI484022
FNOD381764
FMAG334413
FJOH376686
ERUM302409
ERUM254945
ELIT314225
ECOL585397 ECED1_1598
ECHA205920
ECAN269484
DVUL882
DSP255470
DSP216389
DSHI398580
DRED349161
DRAD243230
DPSY177439
DOLE96561
DNOD246195
DHAF138119
DGEO319795 DGEO_2416
DETH243164
DDES207559
CVES412965
CTRA471473
CTRA471472
CTET212717
CTEP194439
CSUL444179
CRUT413404
CPRO264201
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPER289380
CPER195103
CPER195102
CNOV386415
CMUR243161
CMIC443906
CMIC31964
CMET456442
CMAQ397948
CKOR374847
CKLU431943
CJEJ407148
CJEJ360109
CJEJ354242
CJEJ195099
CJEJ192222
CJEI306537
CJAP155077
CHYD246194
CHUT269798
CGLU196627
CFET360106
CFEL264202
CEFF196164
CDIP257309
CDIF272563
CDES477974
CCHL340177
CCAV227941
CBUR434922
CBUR360115
CBUR227377
CBOT536232
CBOT515621
CBOT508765
CBOT498213
CBOT441772
CBOT441771
CBOT441770
CBOT36826
CBLO291272
CBLO203907
CACE272562
CABO218497
BTUR314724
BTRI382640
BTHE226186
BSP376 BRADO3017
BSP107806
BQUI283165
BLON206672
BHER314723
BHEN283166
BGAR290434
BFRA295405
BFRA272559
BCIC186490
BBUR224326
BBAC360095
BBAC264462
BAPH372461
BAPH198804
BAFZ390236
AYEL322098
AVAR240292
AURANTIMONAS
ASP76114
ASP232721 AJS_0220
APHA212042
APER272557
AORE350688
ANAE240017 ANA_2764
AMET293826 AMET_4338
AMAR329726
AMAR234826
ALAI441768
AFUL224325
AFER243159
AEHR187272
ADEH290397
ABUT367737
ABOR393595
AAVE397945
AAEO224324


Organism features enriched in list (features available for 361 out of the 384 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00985956692
Arrangment:Pairs 0.000039251112
Disease:Gastroenteritis 0.0040208313
Disease:Wide_range_of_infections 0.00483761111
Endospores:No 0.0000958151211
Endospores:Yes 0.00192352353
GC_Content_Range4:0-40 4.038e-11168213
GC_Content_Range4:60-100 2.947e-1156145
GC_Content_Range7:0-30 2.678e-74447
GC_Content_Range7:30-40 0.0000195124166
GC_Content_Range7:40-50 0.006669083117
GC_Content_Range7:50-60 0.001337753107
GC_Content_Range7:60-70 3.648e-1052134
Genome_Size_Range5:0-2 2.481e-34152155
Genome_Size_Range5:2-4 0.0006188139197
Genome_Size_Range5:4-6 1.185e-2063184
Genome_Size_Range5:6-10 5.566e-12747
Genome_Size_Range9:0-1 1.630e-62727
Genome_Size_Range9:1-2 1.483e-26125128
Genome_Size_Range9:2-3 0.000025293120
Genome_Size_Range9:4-5 0.00019614496
Genome_Size_Range9:5-6 5.098e-171988
Genome_Size_Range9:6-8 1.812e-10538
Gram_Stain:Gram_Neg 0.0022126191333
Habitat:Aquatic 0.00695896691
Habitat:Terrestrial 0.00409991231
Motility:Yes 2.671e-6139267
Optimal_temp.:25-30 0.0048808619
Optimal_temp.:30-37 0.0005115418
Oxygen_Req:Aerobic 0.001308599185
Oxygen_Req:Anaerobic 3.266e-1797102
Oxygen_Req:Facultative 0.0000112101201
Pathogenic_in:Animal 0.00655923266
Pathogenic_in:No 0.0075170152226
Shape:Irregular_coccus 0.00273121617
Shape:Rod 3.860e-9182347
Shape:Sphere 0.00655011719
Shape:Spiral 0.00164372934
Temp._range:Hyperthermophilic 0.00001242323
Temp._range:Mesophilic 0.0083988283473



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
CHOLINE-BETAINE-ANA-PWY (choline degradation I)1351000.4953
BETSYN-PWY (glycine betaine biosynthesis I (Gram-negative bacteria))1381000.4837
VALDEG-PWY (valine degradation I)2901540.4543
PROTOCATECHUATE-ORTHO-CLEAVAGE-PWY (protocatechuate degradation II (ortho-cleavage pathway))2471350.4218
PWY-5704 (urea degradation II)2041190.4188
IDNCAT-PWY (L-idonate degradation)2461340.4172
PWY-561 (superpathway of glyoxylate cycle)1621020.4153
LEU-DEG2-PWY (leucine degradation I)2021170.4096
PWY0-381 (glycerol degradation I)4171830.4081
PWY0-981 (taurine degradation IV)106760.4030
GALACTCAT-PWY (D-galactonate degradation)104750.4025
GLYOXYLATE-BYPASS (glyoxylate cycle)1691030.4008



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G6755   EG10110   EG10036   
G79610.9993540.9995930.999372
G67550.9994790.998752
EG101100.999583
EG10036



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PAIRWISE BLAST SCORES:

  G7961   G6755   EG10110   EG10036   
G79610.0f0-8.0e-812.2e-85
G67552.8e-710.0f01.3e-73-
EG10110--0.0f0-
EG10036---0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- ARGDEG-PWY (superpathway of arginine, putrescine, and 4-aminobutyrate degradation) (degree of match pw to cand: 0.167, degree of match cand to pw: 0.500, average score: 0.840)
  Genes in pathway or complex:
             0.9423 0.8047 G6644 (puuA) G6644-MONOMER (glutamate-putrescine ligase)
             0.9649 0.9418 EG11822 (puuB) EG11822-MONOMER (γ-glutamylputrescine oxidase)
   *in cand* 0.9994 0.9988 EG10036 (puuC) ALDHDEHYDROG-MONOMER (γ-glutamyl-γ-aminobutyraldehyde dehydrogenase)
             0.8950 0.7952 G6645 (puuD) G6645-MONOMER (γ-glutamyl-γ-aminobutyrate hydrolase)
             0.4334 0.1119 EG10960 (speB) AGMATIN-MONOMER (SpeB)
             0.2475 0.1256 EG11501 (adiA) ARGDECARBOXDEG-MONOMER (Adi)
             0.9832 0.9486 EG10361 (gabT) GABATRANSAM-MONOMER (4-aminobutyrate aminotransferase monomer)
             0.9082 0.6665 EG11329 (gabD) SUCCSEMIALDDEHYDROG-MONOMER (GabD)
             0.9893 0.9695 G6646 (puuE) G6646-MONOMER (4-aminobutyrate aminotransferase)
             0.9450 0.8569 G6811 (sad) G6811-MONOMER (Sad)
             0.7030 0.6045 G7596 (ygjG) G7596-MONOMER (putrescine aminotransferase / diamine transaminase)
   *in cand* 0.9994 0.9988 G6755 (ydcW) G6755-MONOMER (γ-aminobutyraldehyde dehydrogenase)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9997 0.9995 EG10110 (betB) BADH-MONOMER (BetB)
   *in cand* 0.9996 0.9994 G7961 (feaB) PHENDEHYD-MONOMER (FeaB)

- ORNARGDEG-PWY (superpathway of arginine and ornithine degradation) (degree of match pw to cand: 0.154, degree of match cand to pw: 0.500, average score: 0.807)
  Genes in pathway or complex:
             0.9450 0.8569 G6811 (sad) G6811-MONOMER (Sad)
             0.9893 0.9695 G6646 (puuE) G6646-MONOMER (4-aminobutyrate aminotransferase)
             0.9082 0.6665 EG11329 (gabD) SUCCSEMIALDDEHYDROG-MONOMER (GabD)
             0.9832 0.9486 EG10361 (gabT) GABATRANSAM-MONOMER (4-aminobutyrate aminotransferase monomer)
             0.2475 0.1256 EG11501 (adiA) ARGDECARBOXDEG-MONOMER (Adi)
             0.4334 0.1119 EG10960 (speB) AGMATIN-MONOMER (SpeB)
             0.8950 0.7952 G6645 (puuD) G6645-MONOMER (γ-glutamyl-γ-aminobutyrate hydrolase)
   *in cand* 0.9994 0.9988 EG10036 (puuC) ALDHDEHYDROG-MONOMER (γ-glutamyl-γ-aminobutyraldehyde dehydrogenase)
             0.9649 0.9418 EG11822 (puuB) EG11822-MONOMER (γ-glutamylputrescine oxidase)
             0.9423 0.8047 G6644 (puuA) G6644-MONOMER (glutamate-putrescine ligase)
   *in cand* 0.9994 0.9988 G6755 (ydcW) G6755-MONOMER (γ-aminobutyraldehyde dehydrogenase)
             0.7030 0.6045 G7596 (ygjG) G7596-MONOMER (putrescine aminotransferase / diamine transaminase)
             0.1773 0.0537 EG10964 (speF) ORNDECARBOXDEG-MONOMER (SpeF)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9997 0.9995 EG10110 (betB) BADH-MONOMER (BetB)
   *in cand* 0.9996 0.9994 G7961 (feaB) PHENDEHYD-MONOMER (FeaB)

- ORNDEG-PWY (superpathway of ornithine degradation) (degree of match pw to cand: 0.286, degree of match cand to pw: 0.500, average score: 0.762)
  Genes in pathway or complex:
             0.1773 0.0537 EG10964 (speF) ORNDECARBOXDEG-MONOMER (SpeF)
             0.7030 0.6045 G7596 (ygjG) G7596-MONOMER (putrescine aminotransferase / diamine transaminase)
   *in cand* 0.9994 0.9988 G6755 (ydcW) G6755-MONOMER (γ-aminobutyraldehyde dehydrogenase)
             0.9423 0.8047 G6644 (puuA) G6644-MONOMER (glutamate-putrescine ligase)
             0.9649 0.9418 EG11822 (puuB) EG11822-MONOMER (γ-glutamylputrescine oxidase)
   *in cand* 0.9994 0.9988 EG10036 (puuC) ALDHDEHYDROG-MONOMER (γ-glutamyl-γ-aminobutyraldehyde dehydrogenase)
             0.8950 0.7952 G6645 (puuD) G6645-MONOMER (γ-glutamyl-γ-aminobutyrate hydrolase)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9997 0.9995 EG10110 (betB) BADH-MONOMER (BetB)
   *in cand* 0.9996 0.9994 G7961 (feaB) PHENDEHYD-MONOMER (FeaB)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

G7961 (centered at G7961)
G6755 (centered at G6755)
EG10110 (centered at EG10110)
EG10036 (centered at EG10036)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7961   G6755   EG10110   EG10036   
194/623221/623227/623208/623
AAUR290340:1:Tyes0---
AAUR290340:2:Tyes-3427068
ABAC204669:0:Tyes0000
ABAU360910:0:Tyes-000
ACAU438753:0:Tyes0279600
ACEL351607:0:Tyes5650--
ACRY349163:8:Tyes0140900
AHYD196024:0:Tyes3456345600
AMET293826:0:Tyes-0--
ANAE240017:0:Tyes-0--
APLE416269:0:Tyes-000
APLE434271:0:Tno-000
ASAL382245:5:Tyes--03189
ASP1667:3:Tyes-0424424
ASP232721:2:Tyes--0-
ASP62928:0:Tyes000774
ASP62977:0:Tyes540-0-
BABO262698:0:Tno0--14
BABO262698:1:Tno-10210-
BAMB339670:2:Tno01045344-
BAMB339670:3:Tno---0
BAMB398577:2:Tno1302016430
BAMY326423:0:Tyes0000
BANT260799:0:Tno7060706706
BANT261594:2:Tno6960696696
BANT568206:2:Tyes074000
BANT592021:2:Tno7410741741
BBRO257310:0:Tyes031180772
BCAN483179:0:Tno---0
BCAN483179:1:Tno-10830-
BCEN331271:1:Tno31600-
BCEN331271:2:Tno---0
BCEN331272:2:Tyes134501662-
BCEN331272:3:Tyes---0
BCER226900:1:Tyes70607060
BCER288681:0:Tno7040704704
BCER315749:1:Tyes68706874
BCER405917:1:Tyes6630663663
BCER572264:1:Tno7310731731
BCLA66692:0:Tyes0000
BHAL272558:0:Tyes0000
BJAP224911:0:Fyes3858256700
BLIC279010:0:Tyes0000
BMAL243160:0:Tno4385180-
BMAL243160:1:Tno---0
BMAL320388:0:Tno0117117-
BMAL320388:1:Tno---0
BMAL320389:0:Tyes890570-
BMAL320389:1:Tyes---0
BMEL224914:0:Tno---0
BMEL224914:1:Tno0-0-
BMEL359391:0:Tno0--14
BMEL359391:1:Tno-9810-
BOVI236:0:Tyes---0
BOVI236:1:Tyes0-0-
BPAR257311:0:Tno82826978280
BPER257313:0:Tyes0000
BPET94624:0:Tyes2397-23970
BPSE272560:0:Tyes56301042177
BPSE320372:0:Tno2435172801914
BPSE320373:0:Tno73001375193
BPUM315750:0:Tyes0000
BSP36773:0:Tyes-0--
BSP36773:1:Tyes380-0-
BSP36773:2:Tyes---0
BSP376:0:Tyes-0--
BSUB:0:Tyes0000
BSUI204722:0:Tyes---0
BSUI204722:1:Tyes-10570-
BSUI470137:0:Tno2540-271
BSUI470137:1:Tno--0-
BTHA271848:0:Tno46410120868
BTHU281309:1:Tno7190719719
BTHU412694:1:Tno6190619619
BVIE269482:6:Tyes000-
BVIE269482:7:Tyes---0
BWEI315730:4:Tyes5970597597
BXEN266265:1:Tyes145400636
CAULO:0:Tyes--00
CBEI290402:0:Tyes-004131
CCON360104:2:Tyes--00
CCUR360105:0:Tyes--00
CHOM360107:1:Tyes--00
CPEL335992:0:Tyes--5520
CPHY357809:0:Tyes-000
CPSY167879:0:Tyes0-18890
CSAL290398:0:Tyes3363363360
CSP501479:6:Fyes00--
CSP501479:8:Fyes--0-
CSP78:2:Tyes0-727727
CVIO243365:0:Tyes027710822
DARO159087:0:Tyes--10190
DGEO319795:0:Tyes--0-
ECAR218491:0:Tyes-0203-
ECOL199310:0:Tno-13990-
ECOL316407:0:Tno108311420994
ECOL331111:6:Tno1194124501135
ECOL362663:0:Tno-10510-
ECOL364106:1:Tno-13220-
ECOL405955:2:Tyes-11170-
ECOL409438:6:Tyes1157121301039
ECOL413997:0:Tno1092113501013
ECOL439855:4:Tno1439134701439
ECOL469008:0:Tno4001140117
ECOL481805:0:Tno5301106107
ECOL585034:0:Tno1080113601020
ECOL585035:0:Tno-11830-
ECOL585055:0:Tno1208126401150
ECOL585056:2:Tno1268135501268
ECOL585057:0:Tno1303001303
ECOL585397:0:Tno-0--
ECOL83334:0:Tno1549172301549
ECOLI:0:Tno1098115701005
ECOO157:0:Tno1881170601881
EFAE226185:3:Tyes-00-
EFER585054:1:Tyes920--
ESP42895:1:Tyes00--
FALN326424:0:Tyes0567000
FNUC190304:0:Tyes-000
FSP106370:0:Tyes-0--
FSP1855:0:Tyes5826058265826
GBET391165:0:Tyes-000
GKAU235909:1:Tyes2635189301856
GTHE420246:1:Tyes202001242
HAUR316274:2:Tyes0-0-
HCHE349521:0:Tyes-002208
HMAR272569:6:Tyes---0
HMAR272569:8:Tyes000-
HWAL362976:1:Tyes0-00
JSP290400:1:Tyes-236902041
KPNE272620:2:Tyes058544774919
KRAD266940:2:Fyes0803--
LBIF355278:2:Tyes000-
LBIF456481:2:Tno000-
LCHO395495:0:Tyes---0
LINN272626:1:Tno-0--
LMON169963:0:Tno--0-
LMON265669:0:Tyes--0-
LPNE272624:0:Tno0000
LPNE297245:1:Fno0000
LPNE297246:1:Fyes0000
LPNE400673:0:Tno0000
LSPH444177:1:Tyes0001708
LXYL281090:0:Tyes-0--
MABS561007:1:Tyes0878--
MACE188937:0:Tyes1185-0-
MAQU351348:2:Tyes--0-
MAVI243243:0:Tyes8618617040
MBAR269797:1:Tyes0-1857-
MBOV233413:0:Tno0---
MBOV410289:0:Tno0---
MGIL350054:3:Tyes10430--
MLOT266835:2:Tyes0239642340
MMAG342108:0:Tyes-0--
MMAR368407:0:Tyes-0--
MMAZ192952:0:Tyes--0-
MPET420662:1:Tyes---0
MSME246196:0:Tyes0045884588
MSP164756:1:Tno24010-340
MSP164757:0:Tno2730017731773
MSP189918:2:Tyes24420-334
MSP266779:3:Tyes3039-2580
MSP400668:0:Tyes3570036193046
MSP409:2:Tyes0-00
MSUC221988:0:Tyes---0
MTBCDC:0:Tno0---
MTBRV:0:Tno0---
MTUB336982:0:Tno0---
MTUB419947:0:Tyes0---
MVAN350058:0:Tyes025390336
MXAN246197:0:Tyes--0-
NARO279238:0:Tyes0--0
NFAR247156:2:Tyes07000
NOCE323261:1:Tyes0-00
NSP35761:1:Tyes0238300
OANT439375:1:Tyes---0
OANT439375:4:Tyes-0--
OANT439375:5:Tyes0-0-
OCAR504832:0:Tyes1070107107
OIHE221109:0:Tyes--00
PAER208963:0:Tyes0199248604794
PAER208964:0:Tno0133013301264
PARC259536:0:Tyes-00-
PATL342610:0:Tyes-00-
PCRY335284:1:Tyes-00343
PENT384676:0:Tyes256580904753
PFLU205922:0:Tyes0042534544
PFLU216595:1:Tyes1992043074591
PFLU220664:0:Tyes0024962775
PHAL326442:0:Tyes--0-
PING357804:0:Tyes--0-
PLUM243265:0:Fyes4202226000
PMEN399739:0:Tyes2412412410
PMUL272843:1:Tyes-0--
PPRO298386:1:Tyes--0-
PPUT160488:0:Tno659022472462
PPUT351746:0:Tyes0195426572907
PPUT76869:0:Tno1164040664280
PSP117:0:Tyes0000
PSP296591:1:Tyes--0-
PSP296591:2:Tyes-3605-0
PSTU379731:0:Tyes1691169116910
PSYR205918:0:Tyes2179452245220
PSYR223283:2:Tyes2941-3430
RCAS383372:0:Tyes0000
RDEN375451:4:Tyes--0-
RETL347834:4:Tyes0--0
RETL347834:5:Tyes-25030-
REUT264198:2:Tyes49901913499
REUT381666:1:Tyes0000
RFER338969:1:Tyes--00
RLEG216596:5:Tyes0--0
RLEG216596:6:Tyes-29230-
RMET266264:1:Tyes000-
RMET266264:2:Tyes---0
RPAL258594:0:Tyes-0--
RPAL316056:0:Tyes-0--
RPAL316057:0:Tyes0-00
RPAL316058:0:Tyes-0--
RPOM246200:0:Tyes00-260
RPOM246200:1:Tyes--0-
RRUB269796:1:Tyes0-00
RSAL288705:0:Tyes02003-902
RSOL267608:1:Tyes01043-0
RSP101510:2:Fyes--0-
RSP101510:3:Fyes8173798-0
RSP357808:0:Tyes0000
RSPH272943:2:Tyes0---
RSPH272943:3:Tyes---0
RSPH272943:4:Tyes-00-
RSPH349101:1:Tno---0
RSPH349101:2:Tno000-
RSPH349102:5:Tyes000522
RXYL266117:0:Tyes1611133700
SALA317655:1:Tyes--0-
SARE391037:0:Tyes-000
SAUR158878:1:Tno2518251825180
SAUR158879:1:Tno2404240424040
SAUR196620:0:Tno2468246824680
SAUR273036:0:Tno2372237223720
SAUR282458:0:Tno2495249524950
SAUR282459:0:Tno2441244124410
SAUR359786:1:Tno2529252925290
SAUR359787:1:Tno2491249124910
SAUR367830:3:Tno2295229522950
SAUR418127:0:Tyes2507250725070
SAUR426430:0:Tno2468246824680
SAUR93061:0:Fno2713271327130
SAUR93062:1:Tno2417241724170
SAVE227882:1:Fyes4202180763
SBAL399599:3:Tyes--1630
SBAL402882:1:Tno-1601600
SBOY300268:1:Tyes0--0
SCO:2:Fyes04091-3345
SDEN318161:0:Tyes-002387
SDYS300267:1:Tyes-0--
SENT209261:0:Tno14780--
SENT220341:0:Tno16600--
SENT295319:0:Tno16610--
SENT321314:2:Tno15010--
SENT454169:2:Tno15280--
SEPI176279:1:Tyes9393930
SEPI176280:0:Tno9595950
SERY405948:0:Tyes0138800
SFLE198214:0:Tyes0431-0
SFLE373384:0:Tno94013640940
SHAE279808:0:Tyes-00119
SHAL458817:0:Tyes--670
SHIGELLA:0:Tno0430-0
SLAC55218:1:Fyes--0-
SLOI323850:0:Tyes--00
SMED366394:3:Tyes-16050-
SMEL266834:0:Tyes0--0
SMEL266834:2:Tyes-13440-
SONE211586:1:Tyes---0
SPEA398579:0:Tno-72720
SPRO399741:1:Tyes026945421099
SSAP342451:2:Tyes000-
SSED425104:0:Tyes--760
SSON300269:1:Tyes-0-132
SSP292414:1:Tyes0--399
SSP292414:2:Tyes--0-
SSP321327:0:Tyes00--
SSP321332:0:Tyes00--
SSP644076:3:Fyes0---
SSP644076:4:Fyes---0
SSP644076:7:Fyes-00-
SSP94122:1:Tyes---0
STHE292459:0:Tyes--0-
STRO369723:0:Tyes--00
STYP99287:1:Tyes15260--
TERY203124:0:Tyes0000
TFUS269800:0:Tyes12030--
TROS309801:1:Tyes0-00
TTHE262724:1:Tyes---0
TTHE300852:1:Tyes-0--
TTHE300852:2:Tyes---0
UMET351160:0:Tyes000-
VEIS391735:1:Tyes16985190-
VPAR223926:0:Tyes000-
VPAR223926:1:Tyes---0
VVUL196600:1:Tyes000-
VVUL196600:2:Tyes---0
VVUL216895:0:Tno000-
XAUT78245:1:Tyes054200
XAXO190486:0:Tyes000-
XCAM190485:0:Tyes0000
XCAM314565:0:Tno0000
XCAM316273:0:Tno0000
XCAM487884:0:Tno0000
YPES187410:5:Tno-0--
YPES214092:3:Tno-000
YPES349746:2:Tno-0--
YPES360102:3:Tyes-000
YPES377628:2:Tno-000
YPES386656:2:Tno-000
YPSE273123:2:Tno-000
YPSE349747:2:Tno-000



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