CANDIDATE ID: 1123

CANDIDATE ID: 1123

NUMBER OF GENES: 4
AVERAGE SCORE:    9.9941883e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    2.5000000e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7546 (glcC) (b2980)
   Products of gene:
     - G7546-MONOMER (GlcC transcriptional dual regulator)
     - MONOMER0-562 (GlcC-Glycolate transcriptional dual regulator)
       Regulatees:
        TU0-1962 (glcDEFGBA)
        TU0-1963 (glcC)

- EG11962 (lldR) (b3604)
   Products of gene:
     - EG11962-MONOMER (LldR transcriptional repressor)
       Regulatees:
        TU164 (lldPRD)
     - CPLX0-7689 (LldR-L-lactose transcriptional activator)
       Regulatees:
        TU164 (lldPRD)

- EG11088 (pdhR) (b0113)
   Products of gene:
     - EG11088-MONOMER (PdhR transcriptional dual regulator)
       Regulatees:
        TU0-7806 (hemL)
        TU0-12943 (tomB-hha)
        TU00101 (cyoABCDE)
        TU00158 (ndh)
        TU0-1143 (yfiD)
        TU00151 (fecABCDE)
        TU00522 (pdhR-aceEF-lpdA)
     - MONOMER-59 (PdhR-pyruvate)

- EG10024 (aceE) (b0114)
   Products of gene:
     - E1P-MONOMER (subunit of E1p component of pyruvate dehydrogenase complex)
     - E1P-CPLX (pyruvate dehydrogenase)
       Reactions:
        pyruvate + lipoate acetyltransferase N6-(lipoyl)lysine  ->  lipoate acetyltransferase N6-(S-acetyldihydrolipoyl)lysine + CO2
         In pathways
         PWY-5173 (PWY-5173)
         PWY-5464 (PWY-5464)
         PYRUVDEHYD-PWY (acetyl-CoA biosynthesis (from pyruvate))
        pyruvate + lipoamide + H+  ->  S-acetyldihydrolipoamide + CO2
     - PYRUVATEDEH-CPLX (pyruvate dehydrogenase multienzyme complex)
       Reactions:
        pyruvate + NAD+ + coenzyme A  ->  acetyl-CoA + CO2 + NADH
         In pathways
         P41-PWY (P41-PWY)
         ANARESP1-PWY (respiration (anaerobic))
         PWY-5482 (PWY-5482)
         PWY-5537 (PWY-5537)
         GLYCOLYSIS-TCA-GLYOX-BYPASS (superpathway of glycolysis, pyruvate dehydrogenase, TCA, and glyoxylate bypass)



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ORGANISMS CONTAINING AT LEAST 3 GENES FROM THE GROUP:

Total number of orgs: 211
Effective number of orgs (counting one per cluster within 468 clusters): 141

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317584
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329534
YPES386656 ncbi Yersinia pestis Pestoides F4
YPES377628 ncbi Yersinia pestis Nepal5164
YPES360102 ncbi Yersinia pestis Antiqua4
YPES349746 ncbi Yersinia pestis Angola4
YPES214092 ncbi Yersinia pestis CO924
YPES187410 ncbi Yersinia pestis KIM 104
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80814
XAUT78245 ncbi Xanthobacter autotrophicus Py24
VVUL216895 ncbi Vibrio vulnificus CMCP64
VVUL196600 ncbi Vibrio vulnificus YJ0164
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106334
VFIS312309 ncbi Vibrio fischeri ES1144
VEIS391735 ncbi Verminephrobacter eiseniae EF01-23
VCHO345073 ncbi Vibrio cholerae O3954
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169614
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT24
STHE292459 ncbi Symbiobacterium thermophilum IAM 148633
SSP94122 ncbi Shewanella sp. ANA-34
SSP644076 Silicibacter sp. TrichCH4B4
SSP292414 ncbi Ruegeria sp. TM10404
SSON300269 ncbi Shigella sonnei Ss0464
SSED425104 ncbi Shewanella sediminis HAW-EB34
SPYO370552 ncbi Streptococcus pyogenes MGAS102703
SPRO399741 ncbi Serratia proteamaculans 5684
SPNE488221 ncbi Streptococcus pneumoniae 705853
SPEA398579 ncbi Shewanella pealeana ATCC 7003454
SONE211586 ncbi Shewanella oneidensis MR-14
SMEL266834 ncbi Sinorhizobium meliloti 10213
SMED366394 ncbi Sinorhizobium medicae WSM4193
SLOI323850 ncbi Shewanella loihica PV-44
SLAC55218 Ruegeria lacuscaerulensis3
SHIGELLA ncbi Shigella flexneri 2a str. 2457T4
SHAL458817 ncbi Shewanella halifaxensis HAW-EB44
SGLO343509 ncbi Sodalis glossinidius morsitans4
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB3
SFLE373384 ncbi Shigella flexneri 5 str. 84014
SFLE198214 ncbi Shigella flexneri 2a str. 3014
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23384
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4764
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B674
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91504
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT184
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty24
SDYS300267 ncbi Shigella dysenteriae Sd1974
SDEN318161 ncbi Shewanella denitrificans OS2174
SDEG203122 ncbi Saccharophagus degradans 2-403
SCO ncbi Streptomyces coelicolor A3(2)4
SBOY300268 ncbi Shigella boydii Sb2274
SBAL402882 ncbi Shewanella baltica OS1854
SBAL399599 ncbi Shewanella baltica OS1954
SAVE227882 ncbi Streptomyces avermitilis MA-46804
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99413
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170253
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170293
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.14
RSP101510 ncbi Rhodococcus jostii RHA14
RSOL267608 ncbi Ralstonia solanacearum GMI10004
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111703
RPOM246200 ncbi Ruegeria pomeroyi DSS-34
RMET266264 ncbi Ralstonia metallidurans CH344
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38413
RFER338969 ncbi Rhodoferax ferrireducens T1184
REUT381666 ncbi Ralstonia eutropha H164
REUT264198 ncbi Ralstonia eutropha JMP1344
RETL347834 ncbi Rhizobium etli CFN 423
RDEN375451 ncbi Roseobacter denitrificans OCh 1143
PTHE370438 ncbi Pelotomaculum thermopropionicum SI3
PSTU379731 ncbi Pseudomonas stutzeri A15014
PSP296591 ncbi Polaromonas sp. JS6664
PPUT76869 ncbi Pseudomonas putida GB-14
PPUT351746 ncbi Pseudomonas putida F14
PPUT160488 ncbi Pseudomonas putida KT24404
PPRO298386 ncbi Photobacterium profundum SS94
PMEN399739 ncbi Pseudomonas mendocina ymp4
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO14
PING357804 ncbi Psychromonas ingrahamii 374
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1254
PFLU220664 ncbi Pseudomonas fluorescens Pf-54
PFLU216595 ncbi Pseudomonas fluorescens SBW254
PFLU205922 ncbi Pseudomonas fluorescens Pf0-14
PENT384676 ncbi Pseudomonas entomophila L484
PATL342610 ncbi Pseudoalteromonas atlantica T6c4
PAER208964 ncbi Pseudomonas aeruginosa PAO14
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA144
OIHE221109 ncbi Oceanobacillus iheyensis HTE8313
OANT439375 ncbi Ochrobactrum anthropi ATCC 491884
NSP35761 Nocardioides sp.3
NMEN374833 ncbi Neisseria meningitidis 0534424
NMEN272831 ncbi Neisseria meningitidis FAM184
NMEN122587 ncbi Neisseria meningitidis Z24914
NMEN122586 ncbi Neisseria meningitidis MC584
NGON242231 ncbi Neisseria gonorrhoeae FA 10904
MTHE264732 ncbi Moorella thermoacetica ATCC 390733
MSP400668 ncbi Marinomonas sp. MWYL14
MSP266779 ncbi Chelativorans sp. BNC14
MSP189918 ncbi Mycobacterium sp. KMS3
MSP164757 ncbi Mycobacterium sp. JLS3
MSP164756 ncbi Mycobacterium sp. MCS3
MSME246196 ncbi Mycobacterium smegmatis MC2 1554
MMAG342108 ncbi Magnetospirillum magneticum AMB-13
MLOT266835 ncbi Mesorhizobium loti MAFF3030994
MAQU351348 ncbi Marinobacter aquaeolei VT84
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53343
LMON169963 ncbi Listeria monocytogenes EGD-e3
LINN272626 ncbi Listeria innocua Clip112623
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785784
JSP290400 ncbi Jannaschia sp. CCS14
ILOI283942 ncbi Idiomarina loihiensis L2TR4
HMOD498761 ncbi Heliobacterium modesticaldum Ice14
HCHE349521 ncbi Hahella chejuensis KCTC 23964
GURA351605 ncbi Geobacter uraniireducens Rf43
GSUL243231 ncbi Geobacter sulfurreducens PCA4
GKAU235909 ncbi Geobacillus kaustophilus HTA4263
ESP42895 Enterobacter sp.4
EFER585054 ncbi Escherichia fergusonii ATCC 354694
ECOO157 ncbi Escherichia coli O157:H7 EDL9334
ECOL83334 Escherichia coli O157:H74
ECOL585397 ncbi Escherichia coli ED1a4
ECOL585057 ncbi Escherichia coli IAI394
ECOL585056 ncbi Escherichia coli UMN0264
ECOL585055 ncbi Escherichia coli 559894
ECOL585035 ncbi Escherichia coli S884
ECOL585034 ncbi Escherichia coli IAI14
ECOL481805 ncbi Escherichia coli ATCC 87394
ECOL469008 ncbi Escherichia coli BL21(DE3)4
ECOL439855 ncbi Escherichia coli SMS-3-54
ECOL413997 ncbi Escherichia coli B str. REL6064
ECOL409438 ncbi Escherichia coli SE114
ECOL405955 ncbi Escherichia coli APEC O14
ECOL364106 ncbi Escherichia coli UTI894
ECOL362663 ncbi Escherichia coli 5364
ECOL331111 ncbi Escherichia coli E24377A4
ECOL316407 ncbi Escherichia coli K-12 substr. W31104
ECOL199310 ncbi Escherichia coli CFT0734
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10434
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough3
DSHI398580 ncbi Dinoroseobacter shibae DFL 124
DRED349161 ncbi Desulfotomaculum reducens MI-14
DHAF138119 ncbi Desulfitobacterium hafniense Y514
DARO159087 ncbi Dechloromonas aromatica RCB4
CVIO243365 ncbi Chromobacterium violaceum ATCC 124724
CTET212717 ncbi Clostridium tetani E883
CSP78 Caulobacter sp.3
CSP501479 Citreicella sp. SE454
CSAL290398 ncbi Chromohalobacter salexigens DSM 30434
CPSY167879 ncbi Colwellia psychrerythraea 34H4
CNOV386415 ncbi Clostridium novyi NT3
CKLU431943 ncbi Clostridium kluyveri DSM 5553
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29013
CDIF272563 ncbi Clostridium difficile 6303
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto3
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6573
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B3
CBOT498213 ncbi Clostridium botulinum B1 str. Okra3
CBOT441772 ncbi Clostridium botulinum F str. Langeland3
CBOT441771 ncbi Clostridium botulinum A str. Hall3
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193973
CBOT36826 Clostridium botulinum A3
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80524
CACE272562 ncbi Clostridium acetobutylicum ATCC 8243
BXEN266265 ncbi Burkholderia xenovorans LB4004
BWEI315730 ncbi Bacillus weihenstephanensis KBAB43
BVIE269482 ncbi Burkholderia vietnamiensis G44
BTHU412694 ncbi Bacillus thuringiensis Al Hakam3
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-273
BTHA271848 ncbi Burkholderia thailandensis E2644
BSUI470137 ncbi Brucella suis ATCC 234453
BSUI204722 ncbi Brucella suis 13303
BSUB ncbi Bacillus subtilis subtilis 1683
BSP36773 Burkholderia sp.4
BPSE320373 ncbi Burkholderia pseudomallei 6684
BPSE320372 ncbi Burkholderia pseudomallei 1710b4
BPSE272560 ncbi Burkholderia pseudomallei K962434
BPET94624 Bordetella petrii4
BPER257313 ncbi Bordetella pertussis Tohama I4
BPAR257311 ncbi Bordetella parapertussis 128224
BOVI236 Brucella ovis3
BMEL359391 ncbi Brucella melitensis biovar Abortus 23083
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M3
BMAL320389 ncbi Burkholderia mallei NCTC 102474
BMAL243160 ncbi Burkholderia mallei ATCC 233444
BLIC279010 ncbi Bacillus licheniformis ATCC 145804
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1103
BHAL272558 ncbi Bacillus halodurans C-1253
BCLA66692 ncbi Bacillus clausii KSM-K163
BCER572264 ncbi Bacillus cereus 03BB1023
BCER405917 Bacillus cereus W3
BCER315749 ncbi Bacillus cytotoxicus NVH 391-983
BCER288681 ncbi Bacillus cereus E33L3
BCER226900 ncbi Bacillus cereus ATCC 145793
BCEN331272 ncbi Burkholderia cenocepacia HI24244
BCEN331271 ncbi Burkholderia cenocepacia AU 10544
BCAN483179 ncbi Brucella canis ATCC 233653
BBRO257310 ncbi Bordetella bronchiseptica RB504
BANT592021 ncbi Bacillus anthracis A02483
BANT568206 ncbi Bacillus anthracis CDC 6843
BANT261594 ncbi Bacillus anthracis Ames Ancestor3
BANT260799 ncbi Bacillus anthracis Sterne3
BAMY326423 ncbi Bacillus amyloliquefaciens FZB423
BAMB398577 ncbi Burkholderia ambifaria MC40-64
BAMB339670 ncbi Burkholderia ambifaria AMMD4
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9413
ASP62977 ncbi Acinetobacter sp. ADP14
ASP62928 ncbi Azoarcus sp. BH724
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4494
AMET293826 ncbi Alkaliphilus metalliredigens QYMF3
AHYD196024 Aeromonas hydrophila dhakensis4
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-14
ACAU438753 ncbi Azorhizobium caulinodans ORS 5714


Names of the homologs of the genes in the group in each of these orgs
  G7546   EG11962   EG11088   EG10024   
YPSE349747 YPSIP31758_3364YPSIP31758_3364YPSIP31758_3364YPSIP31758_3363
YPSE273123 YPTB0712YPTB0712YPTB0712YPTB0713
YPES386656 YPDSF_2934YPDSF_2934YPDSF_2934YPDSF_2935
YPES377628 YPN_0668YPN_0668YPN_0668YPN_0669
YPES360102 YPA_2922YPA_2922YPA_2922YPA_2921
YPES349746 YPANGOLA_A1035YPANGOLA_A1035YPANGOLA_A1035YPANGOLA_A1034
YPES214092 YPO3420YPO3420YPO3420YPO3419
YPES187410 Y0766Y0766Y0766Y0767
YENT393305 YE0698YE0698YE0698YE0699
XAUT78245 XAUT_4351XAUT_3930XAUT_4351XAUT_0214
VVUL216895 VV1_1629VV1_1629VV1_1629VV1_1630
VVUL196600 VV2774VV2774VV2774VV2773
VPAR223926 VP2520VP2520VP2520VP2519
VFIS312309 VF2182VF2182VF2182VF2181
VEIS391735 VEIS_3567VEIS_1542VEIS_1919
VCHO345073 VC0395_A1991VC0395_A1991VC0395_A1991VC0395_A1990
VCHO VC2415VC2415VC2415VC2414
STYP99287 STM0151STM3693STM0151STM0152
STHE292459 STH97STH97STH97
SSP94122 SHEWANA3_0425SHEWANA3_0425SHEWANA3_0425SHEWANA3_0426
SSP644076 SCH4B_2769SCH4B_2769SCH4B_2769SCH4B_2956
SSP292414 TM1040_2589TM1040_2589TM1040_2589TM1040_2736
SSON300269 SSO_0121SSO_3801SSO_0121SSO_0122
SSED425104 SSED_0430SSED_0430SSED_0430SSED_0431
SPYO370552 MGAS10270_SPY1173MGAS10270_SPY1173MGAS10270_SPY1493
SPRO399741 SPRO_4012SPRO_4012SPRO_4012SPRO_4011
SPNE488221 SP70585_2240SP70585_2240SP70585_2240
SPEA398579 SPEA_0418SPEA_0418SPEA_0418SPEA_0419
SONE211586 SO_0423SO_0423SO_0423SO_0424
SMEL266834 SMC00829SMC00829SMC00829
SMED366394 SMED_0391SMED_0391SMED_0391
SLOI323850 SHEW_3432SHEW_3432SHEW_3432SHEW_3431
SLAC55218 SL1157_1855SL1157_1855SL1157_1855
SHIGELLA GLCCLLDRPDHRACEE
SHAL458817 SHAL_0475SHAL_0475SHAL_0475SHAL_0476
SGLO343509 SG0466SG0466SG0466SG0467
SFUM335543 SFUM_1522SFUM_1522SFUM_1522
SFLE373384 SFV_3035SFV_3927SFV_0104SFV_0105
SFLE198214 AAN44498.1AAN45090.1AAN41774.1AAN41775.1
SERY405948 SACE_3859SACE_3859SACE_3859SACE_1532
SENT454169 SEHA_C0165SEHA_C4017SEHA_C0165SEHA_C0166
SENT321314 SCH_0150SCH_3617SCH_0150SCH_0151
SENT295319 SPA0155SPA3545SPA0155SPA0156
SENT220341 STY0174STY4103STY0174STY0175
SENT209261 T0157T3826T0157T0158
SDYS300267 SDY_0143SDY_4037SDY_0143SDY_0144
SDEN318161 SDEN_3384SDEN_3384SDEN_3384SDEN_3383
SDEG203122 SDE_0954SDE_1270SDE_2573
SCO SCO2442SCO2442SCO2442SCO2371
SBOY300268 SBO_0102SBO_3609SBO_0102SBO_0103
SBAL402882 SHEW185_3935SHEW185_3935SHEW185_3935SHEW185_3934
SBAL399599 SBAL195_4055SBAL195_4055SBAL195_4055SBAL195_4054
SAVE227882 SAV7278SAV7278SAV1318SAV6020
RXYL266117 RXYL_2589RXYL_2589RXYL_2589
RSPH349102 RSPH17025_0194RSPH17025_0194RSPH17025_0194
RSPH349101 RSPH17029_2695RSPH17029_2695RSPH17029_2695
RSPH272943 RSP_1034RSP_1034RSP_1034RSP_3974
RSP101510 RHA1_RO02909RHA1_RO08849RHA1_RO08849RHA1_RO02566
RSOL267608 RSC1078RSC1078RSC1078RSC1600
RRUB269796 RRU_A1414RRU_A1414RRU_A1414
RPOM246200 SPO_3231SPO_3231SPO_3231SPO_A0319
RMET266264 RMET_5900RMET_5900RMET_5900RMET_4263
RLEG216596 RL2337PRL120399PRL120779
RFER338969 RFER_0202RFER_0202RFER_0202RFER_2212
REUT381666 H16_B2456H16_B0094H16_B0094H16_A1753
REUT264198 REUT_B3714REUT_B5449REUT_B5449REUT_A1303
RETL347834 RHE_CH02059RHE_PF00067RHE_PF00235
RDEN375451 RD1_1326RD1_1326RD1_1326
PTHE370438 PTH_2233PTH_2232PTH_2233
PSTU379731 PST_0430PST_3335PST_3335PST_3852
PSP296591 BPRO_3977BPRO_3963BPRO_4884BPRO_3831
PPUT76869 PPUTGB1_2160PPUTGB1_4735PPUTGB1_4735PPUTGB1_0367
PPUT351746 PPUT_2019PPUT_4600PPUT_4600PPUT_0364
PPUT160488 PP_3744PP_4734PP_4734PP_0339
PPRO298386 PBPRA3197PBPRA3197PBPRA3197PBPRA3196
PMEN399739 PMEN_0204PMEN_3633PMEN_3633PMEN_0576
PLUM243265 PLU3624PLU3624PLU3624PLU3623
PING357804 PING_2928PING_2928PING_2928PING_2927
PHAL326442 PSHAA0390PSHAA0390PSHAA0390PSHAA0391
PFLU220664 PFL_2270PFL_0818PFL_0818PFL_3977
PFLU216595 PFLU5277PFLU5277PFLU5277PFLU3920
PFLU205922 PFL_0754PFL_0754PFL_0754PFL_0463
PENT384676 PSEEN0769PSEEN0769PSEEN0769PSEEN5145
PATL342610 PATL_3349PATL_3349PATL_3349PATL_1115
PAER208964 PA5356PA4769PA4769PA5015
PAER208963 PA14_70710PA14_63070PA14_63070PA14_66290
OIHE221109 OB0369OB0369OB0369
OANT439375 OANT_3007OANT_3007OANT_3007OANT_0661
NSP35761 NOCA_4197NOCA_2132NOCA_4858
NMEN374833 NMCC_1623NMCC_1623NMCC_1623NMCC_1254
NMEN272831 NMC1629NMC1629NMC1629NMC1278
NMEN122587 NMA1965NMA1965NMA1965NMA1554
NMEN122586 NMB_1711NMB_1711NMB_1711NMB_1341
NGON242231 NGO1360NGO1360NGO1360NGO0565
MTHE264732 MOTH_2304MOTH_2304MOTH_2304
MSP400668 MMWYL1_0071MMWYL1_0071MMWYL1_0071MMWYL1_2307
MSP266779 MESO_0366MESO_0366MESO_0366MESO_3440
MSP189918 MKMS_4471MKMS_0349MKMS_3424
MSP164757 MJLS_4765MJLS_0328MJLS_3373
MSP164756 MMCS_4384MMCS_0339MMCS_3362
MSME246196 MSMEG_0596MSMEG_2794MSMEG_2605MSMEG_4323
MMAG342108 AMB0238AMB0238AMB0238
MLOT266835 MLL6911MLL6911MLL6911MLR9539
MAQU351348 MAQU_3306MAQU_0362MAQU_0362MAQU_3328
LWEL386043 LWE0926LWE0926LWE0926
LMON169963 LMO0948LMO0948LMO0948
LINN272626 LIN0947LIN0947LIN0947
KPNE272620 GKPORF_B4399GKPORF_B3310GKPORF_B4399GKPORF_B4400
JSP290400 JANN_1666JANN_1666JANN_1666JANN_3557
ILOI283942 IL0457IL0457IL0457IL0458
HMOD498761 HM1_3142HM1_3142HM1_3142HM1_1268
HCHE349521 HCH_01271HCH_01271HCH_01271HCH_01272
GURA351605 GURA_0158GURA_0158GURA_2197
GSUL243231 GSU_1626GSU_1626GSU_1626GSU_2919
GKAU235909 GK0396GK2015GK2015
ESP42895 ENT638_0659ENT638_0131ENT638_0659ENT638_0660
EFER585054 EFER_0133EFER_3598EFER_0133EFER_0135
ECOO157 PDHRLLDRPDHRACEE
ECOL83334 ECS0117ECS4482ECS0117ECS0118
ECOL585397 ECED1_3623ECED1_4290ECED1_0117ECED1_0118
ECOL585057 ECIAI39_3468ECIAI39_4125ECIAI39_0113ECIAI39_0114
ECOL585056 ECUMN_3456ECUMN_4119ECUMN_0110ECUMN_0111
ECOL585055 EC55989_0106EC55989_4071EC55989_0106EC55989_0107
ECOL585035 ECS88_3355ECS88_4021ECS88_0121ECS88_0123
ECOL585034 ECIAI1_3122ECIAI1_3777ECIAI1_0110ECIAI1_0112
ECOL481805 ECOLC_0720ECOLC_0104ECOLC_3546ECOLC_3545
ECOL469008 ECBD_0758ECBD_0121ECBD_3506ECBD_3505
ECOL439855 ECSMS35_3258ECSMS35_3941ECSMS35_0123ECSMS35_0124
ECOL413997 ECB_02849ECB_03462ECB_00112ECB_00113
ECOL409438 ECSE_3258ECSE_3886ECSE_0113ECSE_0114
ECOL405955 APECO1_3447APECO1_2851APECO1_1872APECO1_1871
ECOL364106 UTI89_C3395UTI89_C4145UTI89_C0125UTI89_C0127
ECOL362663 ECP_3058ECP_3705ECP_0119ECP_0121
ECOL331111 ECE24377A_3440ECE24377A_4108ECE24377A_0115ECE24377A_0116
ECOL316407 ECK2975:JW2947:B2980ECK3594:JW3579:B3604ECK0112:JW0109:B0113ECK0113:JW0110:B0114
ECOL199310 C3710C4426C0140C0142
ECAR218491 ECA3790ECA3790ECA3790ECA3789
DVUL882 DVU_2785DVU_2785DVU_2785
DSHI398580 DSHI_3026DSHI_3026DSHI_3026DSHI_1968
DRED349161 DRED_2187DRED_2187DRED_2188DRED_3075
DHAF138119 DSY2275DSY2275DSY2275DSY4868
DARO159087 DARO_1767DARO_1767DARO_1767DARO_0442
CVIO243365 CV_3037CV_3037CV_3037CV_0526
CTET212717 CTC_00971CTC_00971CTC_00971
CSP78 CAUL_1426CAUL_1834CAUL_3079
CSP501479 CSE45_4250CSE45_4250CSE45_4250CSE45_0498
CSAL290398 CSAL_0403CSAL_0403CSAL_0403CSAL_0855
CPSY167879 CPS_4809CPS_4809CPS_4809CPS_4808
CNOV386415 NT01CX_1608NT01CX_1608NT01CX_1608
CKLU431943 CKL_1694CKL_2524CKL_3578
CHYD246194 CHY_0434CHY_0434CHY_0434
CDIF272563 CD1169CD3565CD2322
CBOT536232 CLM_1249CLM_1249CLM_1755
CBOT515621 CLJ_B1140CLJ_B1618CLJ_B1618
CBOT508765 CLL_A0360CLL_A0360CLL_A1583
CBOT498213 CLD_3469CLD_3034CLD_3034
CBOT441772 CLI_1180CLI_1600CLI_1600
CBOT441771 CLC_1143CLC_1143CLC_1553
CBOT441770 CLB_1131CLB_1131CLB_1541
CBOT36826 CBO1091CBO1091CBO1520
CBEI290402 CBEI_0309CBEI_4096CBEI_5004CBEI_4871
CACE272562 CAC2546CAC2546CAC2546
BXEN266265 BXE_B1175BXE_B1175BXE_B1175BXE_C1063
BWEI315730 BCERKBAB4_1217BCERKBAB4_1217BCERKBAB4_1217
BVIE269482 BCEP1808_2855BCEP1808_2855BCEP1808_2855BCEP1808_2217
BTHU412694 BALH_1164BALH_1164BALH_1164
BTHU281309 BT9727_1193BT9727_1193BT9727_1193
BTHA271848 BTH_II2081BTH_II2081BTH_II2081BTH_I1864
BSUI470137 BSUIS_B0180BSUIS_B0180BSUIS_B0180
BSUI204722 BR_A0177BR_A0177BR_A0177
BSUB BSU34180BSU34180BSU34180
BSP36773 BCEP18194_B0034BCEP18194_B0034BCEP18194_A6080BCEP18194_B1007
BPSE320373 BURPS668_A0554BURPS668_A0554BURPS668_A0554BURPS668_A2462
BPSE320372 BURPS1710B_B2204BURPS1710B_B2204BURPS1710B_B2204BURPS1710B_B0926
BPSE272560 BPSS0320BPSS0320BPSS0320BPSS1711
BPET94624 BPET4865BPET4865BPET4865BPET3019
BPER257313 BP3681BP3681BP3681BP1121
BPAR257311 BPP0097BPP0097BPP0097BPP3220
BOVI236 GBOORFA0169GBOORFA0169GBOORFA0169
BMEL359391 BAB2_0172BAB2_0172BAB2_0172
BMEL224914 BMEII1066BMEII1066BMEII1066
BMAL320389 BMA10247_A0866BMA10247_A0866BMA10247_A0866BMA10247_A0512
BMAL243160 BMA_A1432BMA_A1432BMA_A1432BMA_1721
BLIC279010 BL03455BL03455BL03455BL01777
BJAP224911 BLL6835BLL6835BLR3720
BHAL272558 BH1835BH1835BH1835
BCLA66692 ABC4039ABC0978ABC4038
BCER572264 BCA_1353BCA_1353BCA_1353
BCER405917 BCE_1415BCE_1415BCE_1415
BCER315749 BCER98_1023BCER98_1023BCER98_1023
BCER288681 BCE33L1195BCE33L1195BCE33L1195
BCER226900 BC_1302BC_1302BC_1302
BCEN331272 BCEN2424_6710BCEN2424_6710BCEN2424_6710BCEN2424_2137
BCEN331271 BCEN_6475BCEN_6475BCEN_6475BCEN_5940
BCAN483179 BCAN_B0177BCAN_B0177BCAN_B0177
BBRO257310 BB0096BB0096BB0096BB3672
BANT592021 BAA_1381BAA_1381BAA_1381
BANT568206 BAMEG_3283BAMEG_3283BAMEG_3283
BANT261594 GBAA1314GBAA1314GBAA1314
BANT260799 BAS1215BAS1215BAS1215
BAMY326423 RBAM_031490RBAM_031490RBAM_031490
BAMB398577 BAMMC406_5490BAMMC406_5490BAMMC406_2669BAMMC406_2047
BAMB339670 BAMB_4937BAMB_4937BAMB_2802BAMB_2174
BABO262698 BRUAB2_0172BRUAB2_0172BRUAB2_0172
ASP62977 ACIAD0107ACIAD0107ACIAD0107ACIAD3507
ASP62928 AZO1170AZO1170AZO1170AZO1373
ASAL382245 ASA_0418ASA_0418ASA_0418ASA_0419
AMET293826 AMET_3750AMET_3750AMET_3750
AHYD196024 AHA_3864AHA_3864AHA_3864AHA_3863
AEHR187272 MLG_2283MLG_2283MLG_2283MLG_0269
ACAU438753 AZC_0823AZC_0823AZC_0823AZC_0327


Organism features enriched in list (features available for 198 out of the 211 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Pairs 7.109e-658112
Disease:Botulism 0.004368755
Disease:Brucellosis 0.004368755
Disease:Bubonic_plague 0.001458766
Disease:Dysentery 0.001458766
Disease:Gastroenteritis 0.00151541013
Disease:Opportunistic_infections 0.004368755
Endospores:No 2.115e-940211
Endospores:Yes 1.981e-83753
GC_Content_Range4:0-40 1.089e-1333213
GC_Content_Range4:40-60 0.000016299224
GC_Content_Range4:60-100 0.000295466145
GC_Content_Range7:30-40 1.957e-1222166
GC_Content_Range7:50-60 3.329e-759107
GC_Content_Range7:60-70 0.000271462134
Genome_Size_Range5:0-2 1.763e-321155
Genome_Size_Range5:2-4 7.945e-937197
Genome_Size_Range5:4-6 2.161e-32126184
Genome_Size_Range5:6-10 1.957e-83447
Genome_Size_Range9:1-2 1.219e-251128
Genome_Size_Range9:2-3 5.404e-1014120
Genome_Size_Range9:4-5 1.740e-146696
Genome_Size_Range9:5-6 8.020e-136088
Genome_Size_Range9:6-8 1.262e-62738
Genome_Size_Range9:8-10 0.007800379
Gram_Stain:Gram_Neg 3.794e-6138333
Habitat:Host-associated 3.717e-646206
Habitat:Multiple 4.589e-889178
Habitat:Specialized 0.0008324853
Habitat:Terrestrial 0.00740201731
Motility:No 3.580e-1120151
Motility:Yes 5.819e-14133267
Oxygen_Req:Anaerobic 0.001146122102
Oxygen_Req:Facultative 2.791e-693201
Pathogenic_in:Human 0.005242985213
Shape:Coccus 4.739e-61182
Shape:Rod 5.248e-19166347
Shape:Sphere 0.0033075119
Shape:Spiral 0.0000781234
Temp._range:Hyperthermophilic 0.0007137123
Temp._range:Mesophilic 0.0008847174473



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 382
Effective number of orgs (counting one per cluster within 468 clusters): 305

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM40
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A1
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110181
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103311
XFAS405440 ncbi Xylella fastidiosa M121
XFAS183190 ncbi Xylella fastidiosa Temecula11
XFAS160492 ncbi Xylella fastidiosa 9a5c1
XCAM487884 Xanthomonas campestris pv. paulliniae1
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-101
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80041
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339131
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3061
WSUC273121 ncbi Wolinella succinogenes DSM 17401
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/271
TWHI203267 ncbi Tropheryma whipplei Twist1
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTHE300852 ncbi Thermus thermophilus HB81
TTHE262724 ncbi Thermus thermophilus HB271
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB40
TSP28240 Thermotoga sp.0
TSP1755 Thermoanaerobacter sp.1
TROS309801 ncbi Thermomicrobium roseum DSM 51591
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332231
TPET390874 ncbi Thermotoga petrophila RKU-10
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TMAR243274 ncbi Thermotoga maritima MSB80
TLET416591 ncbi Thermotoga lettingae TMO0
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TFUS269800 ncbi Thermobifida fusca YX0
TERY203124 ncbi Trichodesmium erythraeum IMS1010
TELO197221 ncbi Thermosynechococcus elongatus BP-10
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12510
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252591
TDEN243275 ncbi Treponema denticola ATCC 354050
TCRU317025 ncbi Thiomicrospira crunogena XCL-21
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen0
STRO369723 ncbi Salinispora tropica CNB-4401
STOK273063 ncbi Sulfolobus tokodaii 70
STHE322159 ncbi Streptococcus thermophilus LMD-90
STHE299768 ncbi Streptococcus thermophilus CNRZ10660
STHE264199 ncbi Streptococcus thermophilus LMG 183110
SSUI391296 ncbi Streptococcus suis 98HAH330
SSUI391295 ncbi Streptococcus suis 05ZYH330
SSP84588 ncbi Synechococcus sp. WH 81020
SSP64471 ncbi Synechococcus sp. CC93110
SSP387093 ncbi Sulfurovum sp. NBC37-10
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)0
SSP321327 ncbi Synechococcus sp. JA-3-3Ab0
SSP1148 ncbi Synechocystis sp. PCC 68030
SSP1131 Synechococcus sp. CC96050
SSOL273057 ncbi Sulfolobus solfataricus P21
SRUB309807 ncbi Salinibacter ruber DSM 138550
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61801
SPYO293653 ncbi Streptococcus pyogenes MGAS50051
SPYO286636 ncbi Streptococcus pyogenes MGAS103941
SPYO198466 ncbi Streptococcus pyogenes MGAS3151
SPYO193567 ncbi Streptococcus pyogenes SSI-11
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS1
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-60
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-140
SPNE171101 ncbi Streptococcus pneumoniae R60
SPNE170187 ncbi Streptococcus pneumoniae G540
SPNE1313 Streptococcus pneumoniae0
SMUT210007 ncbi Streptococcus mutans UA1590
SMAR399550 ncbi Staphylothermus marinus F10
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14350
SGOR29390 Streptococcus gordonii Challis0
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122280
SEPI176279 ncbi Staphylococcus epidermidis RP62A0
SELO269084 ncbi Synechococcus elongatus PCC 63010
SAUR93062 ncbi Staphylococcus aureus aureus COL0
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83250
SAUR426430 ncbi Staphylococcus aureus aureus Newman0
SAUR418127 ncbi Staphylococcus aureus aureus Mu30
SAUR367830 Staphylococcus aureus aureus USA3000
SAUR359787 ncbi Staphylococcus aureus aureus JH10
SAUR359786 ncbi Staphylococcus aureus aureus JH90
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4760
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2520
SAUR273036 ncbi Staphylococcus aureus RF1220
SAUR196620 ncbi Staphylococcus aureus aureus MW20
SAUR158879 ncbi Staphylococcus aureus aureus N3150
SAUR158878 ncbi Staphylococcus aureus aureus Mu500
SARE391037 ncbi Salinispora arenicola CNS-2051
SALA317655 ncbi Sphingopyxis alaskensis RB22560
SAGA211110 ncbi Streptococcus agalactiae NEM3161
SAGA208435 ncbi Streptococcus agalactiae 2603V/R1
SAGA205921 ncbi Streptococcus agalactiae A9091
SACI56780 ncbi Syntrophus aciditrophicus SB0
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RTYP257363 ncbi Rickettsia typhi Wilmington0
RSP357808 ncbi Roseiflexus sp. RS-11
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RPAL316058 ncbi Rhodopseudomonas palustris HaA21
RPAL316057 ncbi Rhodopseudomonas palustris BisB51
RPAL316056 ncbi Rhodopseudomonas palustris BisB180
RPAL316055 ncbi Rhodopseudomonas palustris BisA531
RPAL258594 ncbi Rhodopseudomonas palustris CGA0091
RMAS416276 ncbi Rickettsia massiliae MTU50
RFEL315456 ncbi Rickettsia felis URRWXCal20
RCON272944 ncbi Rickettsia conorii Malish 70
RCAS383372 ncbi Roseiflexus castenholzii DSM 139411
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RALB246199 Ruminococcus albus 80
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97900
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30001
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a1
PSP56811 Psychrobacter sp.1
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-11
PSP117 Pirellula sp.1
PRUM264731 ncbi Prevotella ruminicola 231
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257450
PMUL272843 ncbi Pasteurella multocida multocida Pm701
PMOB403833 ncbi Petrotoga mobilis SJ950
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74547 ncbi Prochlorococcus marinus MIT 93130
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR59920 ncbi Prochlorococcus marinus NATL2A0
PMAR167555 ncbi Prochlorococcus marinus NATL1A0
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13750
PMAR146891 ncbi Prochlorococcus marinus AS96010
PLUT319225 ncbi Chlorobium luteolum DSM 2730
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 171
PHOR70601 ncbi Pyrococcus horikoshii OT30
PGIN242619 ncbi Porphyromonas gingivalis W831
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PDIS435591 ncbi Parabacteroides distasonis ATCC 85031
PCRY335284 ncbi Psychrobacter cryohalolentis K51
PCAR338963 ncbi Pelobacter carbinolicus DSM 23800
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PARC259536 ncbi Psychrobacter arcticus 273-41
PAER178306 ncbi Pyrobaculum aerophilum IM20
PACN267747 ncbi Propionibacterium acnes KPA1712021
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
OCAR504832 ncbi Oligotropha carboxidovorans OM51
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2551
NSP387092 ncbi Nitratiruptor sp. SB155-20
NSP103690 ncbi Nostoc sp. PCC 71200
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
NOCE323261 ncbi Nitrosococcus oceani ATCC 197071
NMUL323848 ncbi Nitrosospira multiformis ATCC 251961
NHAM323097 ncbi Nitrobacter hamburgensis X141
NEUT335283 ncbi Nitrosomonas eutropha C911
NEUR228410 ncbi Nitrosomonas europaea ATCC 197181
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124440
MXAN246197 ncbi Myxococcus xanthus DK 16220
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra1
MTUB336982 ncbi Mycobacterium tuberculosis F111
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MTBRV ncbi Mycobacterium tuberculosis H37Rv1
MTBCDC ncbi Mycobacterium tuberculosis CDC15511
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSP409 Methylobacterium sp.1
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPET420662 ncbi Methylibium petroleiphilum PM11
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR394221 ncbi Maricaulis maris MCS101
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MLEP272631 ncbi Mycobacterium leprae TN1
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26611
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MFLA265072 ncbi Methylobacillus flagellatus KT1
MEXT419610 ncbi Methylobacterium extorquens PA10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MCAP243233 ncbi Methylococcus capsulatus Bath1
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P21
MBOV233413 ncbi Mycobacterium bovis AF2122/971
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MAVI243243 ncbi Mycobacterium avium 1041
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAER449447 ncbi Microcystis aeruginosa NIES-8430
MAEO419665 ncbi Methanococcus aeolicus Nankai-31
MACE188937 ncbi Methanosarcina acetivorans C2A0
MABS561007 ncbi Mycobacterium abscessus ATCC 199771
LSPH444177 ncbi Lysinibacillus sphaericus C3-410
LSAK314315 ncbi Lactobacillus sakei sakei 23K0
LREU557436 ncbi Lactobacillus reuteri DSM 200160
LPNE400673 ncbi Legionella pneumophila Corby1
LPNE297246 ncbi Legionella pneumophila Paris1
LPNE297245 ncbi Legionella pneumophila Lens1
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 11
LPLA220668 ncbi Lactobacillus plantarum WCFS10
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82930
LLAC272623 ncbi Lactococcus lactis lactis Il14030
LLAC272622 ncbi Lactococcus lactis cremoris SK110
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-000
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1300
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566010
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LCHO395495 ncbi Leptothrix cholodnii SP-61
LCAS321967 ncbi Lactobacillus casei ATCC 3340
LBRE387344 ncbi Lactobacillus brevis ATCC 3670
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1970
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5500
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)0
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)0
LACI272621 ncbi Lactobacillus acidophilus NCFM0
JSP375286 ncbi Janthinobacterium sp. Marseille1
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSAL478009 ncbi Halobacterium salinarum R10
HPYL85963 ncbi Helicobacter pylori J990
HPYL357544 ncbi Helicobacter pylori HPAG11
HPY ncbi Helicobacter pylori 266951
HNEP81032 Hyphomonas neptunium1
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMAR272569 ncbi Haloarcula marismortui ATCC 430490
HHEP235279 ncbi Helicobacter hepaticus ATCC 514491
HHAL349124 ncbi Halorhodospira halophila SL11
HDUC233412 ncbi Haemophilus ducreyi 35000HP1
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237790
HARS204773 ncbi Herminiimonas arsenicoxydans1
HACI382638 ncbi Helicobacter acinonychis Sheeba1
GVIO251221 ncbi Gloeobacter violaceus PCC 74210
GOXY290633 ncbi Gluconobacter oxydans 621H0
GMET269799 ncbi Geobacter metallireducens GS-151
GBET391165 ncbi Granulibacter bethesdensis CGDNIH10
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-001
FTUL418136 ncbi Francisella tularensis tularensis WY96-34181
FTUL401614 ncbi Francisella novicida U1121
FTUL393115 ncbi Francisella tularensis tularensis FSC1981
FTUL393011 ncbi Francisella tularensis holarctica OSU181
FTUL351581 Francisella tularensis holarctica FSC2001
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S850
FSP1855 Frankia sp. EAN1pec1
FSP106370 ncbi Frankia sp. CcI31
FRANT ncbi Francisella tularensis tularensis SCHU S41
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250171
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255861
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B10
FMAG334413 ncbi Finegoldia magna ATCC 293280
FJOH376686 ncbi Flavobacterium johnsoniae UW1010
FALN326424 ncbi Frankia alni ACN14a1
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ELIT314225 ncbi Erythrobacter litoralis HTCC25940
EFAE226185 ncbi Enterococcus faecalis V5830
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DSP255470 ncbi Dehalococcoides sp. CBDB10
DSP216389 ncbi Dehalococcoides sp. BAV10
DPSY177439 ncbi Desulfotalea psychrophila LSv540
DOLE96561 ncbi Desulfococcus oleovorans Hxd30
DNOD246195 ncbi Dichelobacter nodosus VCS1703A1
DGEO319795 ncbi Deinococcus geothermalis DSM 113001
DETH243164 ncbi Dehalococcoides ethenogenes 1950
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA1
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTEP194439 ncbi Chlorobium tepidum TLS0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)1
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE250
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPER289380 ncbi Clostridium perfringens SM1011
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10621
CMUR243161 ncbi Chlamydia muridarum Nigg1
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3821
CMIC31964 ncbi Clavibacter michiganensis sepedonicus1
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CJEJ407148 ncbi Campylobacter jejuni jejuni 811160
CJEJ360109 ncbi Campylobacter jejuni doylei 269.970
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1760
CJEJ195099 ncbi Campylobacter jejuni RM12211
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111681
CJEI306537 ncbi Corynebacterium jeikeium K4111
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334061
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3810
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130321
CFET360106 ncbi Campylobacter fetus fetus 82-401
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CEFF196164 ncbi Corynebacterium efficiens YS-3141
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C0
CCUR360105 ncbi Campylobacter curvus 525.920
CCON360104 ncbi Campylobacter concisus 138260
CCHL340177 ncbi Chlorobium chlorochromatii CaD30
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1111
CBUR360115 ncbi Coxiella burnetii RSA 3311
CBUR227377 ncbi Coxiella burnetii RSA 4931
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN1
CBLO203907 ncbi Candidatus Blochmannia floridanus1
CAULO ncbi Caulobacter crescentus CB151
CABO218497 ncbi Chlamydophila abortus S26/30
BTUR314724 ncbi Borrelia turicatae 91E1350
BTRI382640 ncbi Bartonella tribocorum CIP 1054760
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54821
BSP376 Bradyrhizobium sp.1
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)1
BQUI283165 ncbi Bartonella quintana Toulouse0
BLON206672 ncbi Bifidobacterium longum NCC27051
BHER314723 ncbi Borrelia hermsii DAH0
BHEN283166 ncbi Bartonella henselae Houston-10
BGAR290434 ncbi Borrelia garinii PBi0
BFRA295405 ncbi Bacteroides fragilis YCH460
BFRA272559 ncbi Bacteroides fragilis NCTC 93430
BCIC186490 Candidatus Baumannia cicadellinicola1
BBUR224326 ncbi Borrelia burgdorferi B310
BBAC360095 ncbi Bartonella bacilliformis KC5830
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1001
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)1
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)1
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AVAR240292 ncbi Anabaena variabilis ATCC 294130
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP76114 ncbi Aromatoleum aromaticum EbN11
ASP232721 ncbi Acidovorax sp. JS421
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL031
APLE416269 ncbi Actinobacillus pleuropneumoniae L201
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K10
AORE350688 ncbi Alkaliphilus oremlandii OhILAs1
ANAE240017 Actinomyces oris MG11
AMAR329726 ncbi Acaryochloris marina MBIC110170
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232700
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C1
ACRY349163 ncbi Acidiphilium cryptum JF-51
ACEL351607 ncbi Acidothermus cellulolyticus 11B0
ABUT367737 ncbi Arcobacter butzleri RM40181
ABOR393595 ncbi Alcanivorax borkumensis SK21
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3451
AAVE397945 ncbi Acidovorax citrulli AAC00-11
AAUR290340 ncbi Arthrobacter aurescens TC11
AAEO224324 ncbi Aquifex aeolicus VF50


Names of the homologs of the genes in the group in each of these orgs
  G7546   EG11962   EG11088   EG10024   
ZMOB264203
XORY360094 XOOORF_0570
XORY342109 XOO4010
XORY291331 XOO4248
XFAS405440 XFASM12_1647
XFAS183190 PD_1505
XFAS160492 XF0669
XCAM487884 XCC-B100_0605
XCAM316273 XCAORF_3927
XCAM314565 XC_0588
XCAM190485 XCC3625
XAXO190486 XAC0576
WSUC273121 WS0561
WPIP955
WPIP80849
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496 TW0489
TWHI203267 TW255
TVOL273116
TTHE300852 TTHA0185
TTHE262724 TT_C1801
TTEN273068
TSP28240
TSP1755 TETH514_0968
TROS309801 TRD_A0153
TPSE340099 TETH39_0491
TPET390874
TPEN368408
TPAL243276
TMAR243274
TLET416591
TKOD69014
TFUS269800
TERY203124
TELO197221
TDEN326298
TDEN292415 TBD_0159
TDEN243275
TCRU317025 TCR_1001
TACI273075
SWOL335541
STRO369723 STROP_3373
STOK273063
STHE322159
STHE299768
STHE264199
SSUI391296
SSUI391295
SSP84588
SSP64471
SSP387093
SSP321332
SSP321327
SSP1148
SSP1131
SSOL273057 SSO0297
SRUB309807
SPYO370554
SPYO370553
SPYO370551
SPYO319701 M28_SPY1418
SPYO293653 M5005_SPY1375
SPYO286636 M6_SPY1423
SPYO198466 SPYM3_1462
SPYO193567 SPS0404
SPYO186103
SPYO160490 SPY1676
SPNE487214
SPNE487213
SPNE171101
SPNE170187
SPNE1313
SMUT210007
SMAR399550
SHAE279808
SGOR29390
SEPI176280
SEPI176279
SELO269084
SAUR93062
SAUR93061
SAUR426430
SAUR418127
SAUR367830
SAUR359787
SAUR359786
SAUR282459
SAUR282458
SAUR273036
SAUR196620
SAUR158879
SAUR158878
SARE391037 SARE_3613
SALA317655
SAGA211110 GBS0672
SAGA208435 SAG_0699
SAGA205921 SAK_0825
SACI56780
SACI330779
RTYP257363
RSP357808 ROSERS_2952
RRIC452659
RRIC392021
RPRO272947
RPAL316058 RPB_3251
RPAL316057 RPD_2214
RPAL316056
RPAL316055 RPE_4729
RPAL258594 RPA0945
RMAS416276
RFEL315456
RCON272944
RCAS383372 RCAS_1946
RCAN293613
RBEL391896
RBEL336407
RALB246199
RAKA293614
PTOR263820
PSYR223283 PSPTO_5005
PSYR205918 PSYR_1625
PSP56811 PSYCPRWF_1404
PSP312153 PNUC_1551
PSP117 RB3424
PRUM264731 GFRORF0393
PPEN278197
PMUL272843 PM0895
PMOB403833
PMAR93060
PMAR74547
PMAR74546
PMAR59920
PMAR167555
PMAR167546
PMAR167542
PMAR167540
PMAR167539
PMAR146891
PLUT319225
PISL384616
PINT246198 PIN_A1453
PHOR70601
PGIN242619 PG_1748
PFUR186497
PDIS435591 BDI_1668
PCRY335284 PCRYO_1050
PCAR338963
PAST100379
PARS340102
PARC259536 PSYC_1328
PAER178306
PACN267747 PPA0989
PABY272844
OTSU357244
OCAR504832 OCAR_7092
NWIN323098 NWI_2734
NSP387092
NSP103690
NSEN222891
NPHA348780
NOCE323261 NOC_1254
NMUL323848 NMUL_A0358
NHAM323097 NHAM_3531
NEUT335283 NEUT_1608
NEUR228410 NE0361
NARO279238
MXAN246197
MTUB419947 MRA_2261
MTUB336982 TBFG_12270
MTHE349307
MTHE187420
MTBRV RV2241
MTBCDC MT2301
MSYN262723
MSTA339860
MSP409 M446_6301
MSED399549
MPUL272635
MPNE272634
MPET420662 MPE_A2128
MPEN272633
MMYC272632
MMOB267748
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR394221 MMAR10_0254
MMAR368407
MMAR267377
MLEP272631 ML1651
MLAB410358
MKAN190192
MJAN243232 MJ_0681
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGEN243273
MFLO265311
MFLA265072 MFLA_2074
MEXT419610
MCAP340047
MCAP243233 MCA_3000
MBUR259564
MBOV410289 BCG_2258
MBOV233413 MB2265
MBAR269797
MAVI243243 MAV_2196
MART243272
MAER449447
MAEO419665 MAEO_1503
MACE188937
MABS561007 MAB_1884C
LSPH444177
LSAK314315
LREU557436
LPNE400673 LPC_0923
LPNE297246 LPP1461
LPNE297245 LPL1522
LPNE272624 LPG1504
LPLA220668
LMES203120
LLAC272623
LLAC272622
LJOH257314
LINT363253
LINT267671
LINT189518
LHEL405566
LGAS324831
LDEL390333
LDEL321956
LCHO395495 LCHO_1646
LCAS321967
LBRE387344
LBOR355277
LBOR355276
LBIF456481
LBIF355278
LACI272621
JSP375286 MMA_1883
IHOS453591
HWAL362976
HSP64091
HSAL478009
HPYL85963
HPYL357544 HPAG1_0359
HPY HP1088
HNEP81032 HNE_2995
HMUK485914
HMAR272569
HHEP235279 HH_0026
HHAL349124 HHAL_1037
HDUC233412 HD_1625
HBUT415426
HAUR316274
HARS204773 HEAR0746
HACI382638 HAC_0794
GVIO251221
GOXY290633
GMET269799 GMET_0551
GBET391165
FTUL458234 FTA_0328
FTUL418136 FTW_0808
FTUL401614 FTN_1494
FTUL393115 FTF1485C
FTUL393011 FTH_0310
FTUL351581 FTL_0309
FSUC59374
FSP1855 FRANEAN1_1860
FSP106370 FRANCCI3_3057
FRANT ACEE
FPHI484022 FPHI_1185
FNUC190304 FN0294
FNOD381764
FMAG334413
FJOH376686
FALN326424 FRAAL5051
ERUM302409
ERUM254945
ELIT314225
EFAE226185
ECHA205920
ECAN269484
DSP255470
DSP216389
DPSY177439
DOLE96561
DNOD246195 DNO_0544
DGEO319795 DGEO_1887
DETH243164
CVES412965 COSY_0425
CTRA471473
CTRA471472
CTEP194439
CSUL444179
CRUT413404 RMAG_0458
CPRO264201
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPER289380 CPR_0301
CPEL335992 SAR11_0429
CMUR243161 TC_0131
CMIC443906 CMM_1621
CMIC31964 CMS1604
CMET456442
CMAQ397948
CKOR374847
CJEJ407148
CJEJ360109
CJEJ354242
CJEJ195099 CJE_1817
CJEJ192222 CJ1645
CJEI306537 JK0661
CHUT269798 CHU_1894
CHOM360107
CGLU196627 CG2466
CFET360106 CFF8240_0069
CFEL264202
CEFF196164 CE2143
CDES477974
CCUR360105
CCON360104
CCHL340177
CCAV227941
CBUR434922 COXBU7E912_1614
CBUR360115 COXBURSA331_A0569
CBUR227377 CBU_0461
CBLO291272 BPEN_158
CBLO203907 BFL153
CAULO CC0986
CABO218497
BTUR314724
BTRI382640
BTHE226186 BT_0347
BSP376 BRADO2485
BSP107806 BU205
BQUI283165
BLON206672 BL0716
BHER314723
BHEN283166
BGAR290434
BFRA295405
BFRA272559
BCIC186490 BCI_0512
BBUR224326
BBAC360095
BBAC264462 BD0394
BAPH372461 BCC_131
BAPH198804 BUSG199
BAFZ390236
AYEL322098
AVAR240292
AURANTIMONAS
ASP76114 EBA133
ASP232721 AJS_2125
APLE434271 APJL_0776
APLE416269 APL_0773
APHA212042
APER272557
AORE350688 CLOS_2267
ANAE240017 ANA_0949
AMAR329726
AMAR234826
ALAI441768
AFUL224325
AFER243159
ADEH290397 ADEH_2130
ACRY349163 ACRY_2065
ACEL351607
ABUT367737 ABU_1472
ABOR393595 ABO_0622
ABAC204669 ACID345_2792
AAVE397945 AAVE_2462
AAUR290340 AAUR_2433
AAEO224324


Organism features enriched in list (features available for 357 out of the 382 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Clusters 0.00231751617
Arrangment:Pairs 8.110e-746112
Disease:Gastroenteritis 0.0046657313
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 0.00427211111
Endospores:No 6.600e-10163211
Endospores:Yes 4.082e-111053
GC_Content_Range4:0-40 2.200e-12169213
GC_Content_Range4:40-60 0.0001462117224
GC_Content_Range4:60-100 0.000095470145
GC_Content_Range7:30-40 5.859e-11135166
GC_Content_Range7:50-60 5.889e-743107
GC_Content_Range7:60-70 0.000235965134
Genome_Size_Range5:0-2 1.195e-33151155
Genome_Size_Range5:2-4 8.868e-6144197
Genome_Size_Range5:4-6 1.457e-2951184
Genome_Size_Range5:6-10 3.650e-81147
Genome_Size_Range9:0-1 1.193e-62727
Genome_Size_Range9:1-2 8.471e-26124128
Genome_Size_Range9:2-3 1.554e-899120
Genome_Size_Range9:4-5 4.900e-132796
Genome_Size_Range9:5-6 1.925e-122488
Genome_Size_Range9:6-8 1.086e-6938
Gram_Stain:Gram_Neg 0.0000279181333
Habitat:Host-associated 0.0000664147206
Habitat:Multiple 1.431e-781178
Habitat:Specialized 0.00022834453
Habitat:Terrestrial 0.00183011131
Motility:No 2.034e-7118151
Motility:Yes 2.624e-11125267
Optimal_temp.:35-37 0.0000779113
Oxygen_Req:Anaerobic 0.001601275102
Oxygen_Req:Facultative 7.386e-699201
Pathogenic_in:Human 0.0027978116213
Shape:Coccus 0.00003586682
Shape:Irregular_coccus 0.00020571717
Shape:Rod 1.860e-22158347
Shape:Sphere 0.00093911819
Shape:Spiral 8.168e-63234
Temp._range:Hyperthermophilic 0.00014732223
Temp._range:Mesophilic 0.0000981273473
Temp._range:Thermophilic 0.00835802835



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
GLUTAMINDEG-PWY (glutamine degradation I)1911360.5246
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)1491160.5211
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951330.4897
PWY0-823 (arginine degradation III (arginine decarboxylase/agmatinase pathway))2451530.4862
PWY-6196 (serine racemization)102860.4716
GALACTITOLCAT-PWY (galactitol degradation)73690.4669
GLUCARDEG-PWY (D-glucarate degradation I)1521090.4542
AST-PWY (arginine degradation II (AST pathway))120930.4503
GALACTARDEG-PWY (D-galactarate degradation I)1511080.4500
GLYCOLATEMET-PWY (glycolate and glyoxylate degradation I)2701570.4487
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491490.4478
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491490.4478
4AMINOBUTMETAB-PWY (superpathway of 4-aminobutyrate degradation)2121340.4452
PWY0-541 (cyclopropane fatty acid (CFA) biosynthesis)3001670.4439
SERDEG-PWY (L-serine degradation)3491830.4428
PWY-6374 (vibriobactin biosynthesis)77690.4423
CHOLINE-BETAINE-ANA-PWY (choline degradation I)135980.4304
GLUTDEG-PWY (glutamate degradation II)1941240.4270
BETSYN-PWY (glycine betaine biosynthesis I (Gram-negative bacteria))138990.4268
GALACTCAT-PWY (D-galactonate degradation)104820.4254
GLYCOCAT-PWY (glycogen degradation I)2461440.4210
VALDEG-PWY (valine degradation I)2901600.4201
GLUCONSUPER-PWY (D-gluconate degradation)2291370.4181
P344-PWY (acrylonitrile degradation)2101290.4153
TREDEGLOW-PWY (trehalose degradation I (low osmolarity))121890.4117
PWY-561 (superpathway of glyoxylate cycle)1621080.4108
PWY-5901 (2,3-dihydroxybenzoate biosynthesis)1851180.4108
PWY-5194 (siroheme biosynthesis)3121660.4092
SULFATE-CYS-PWY (superpathway of sulfate assimilation and cysteine biosynthesis)3651830.4089
PWY0-901 (selenocysteine biosynthesis I (bacteria))2301360.4084
GLUCARGALACTSUPER-PWY (superpathway of D-glucarate and D-galactarate degradation)135950.4057
P163-PWY (lysine fermentation to acetate and butyrate)3671830.4047
PWY-6268 (adenosylcobalamin salvage from cobalamin)3171670.4046
GLYSYN-THR-PWY (glycine biosynthesis IV)2151290.4008



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG11962   EG11088   EG10024   
G75460.9998420.9998640.999069
EG119620.9998650.998699
EG110880.999174
EG10024



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PAIRWISE BLAST SCORES:

  G7546   EG11962   EG11088   EG10024   
G75460.0f05.4e-202.0e-22-
EG119621.6e-180.0f05.1e-31-
EG110882.2e-211.5e-330.0f0-
EG10024---0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10024 EG11088 (centered at EG10024)
EG11962 (centered at EG11962)
G7546 (centered at G7546)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7546   EG11962   EG11088   EG10024   
232/623219/623217/623313/623
AAUR290340:2:Tyes---0
AAVE397945:0:Tyes---0
ABAC204669:0:Tyes---0
ABAU360910:0:Tyes-215-0
ABOR393595:0:Tyes---0
ABUT367737:0:Tyes---0
ACAU438753:0:Tyes5035035030
ACRY349163:8:Tyes---0
ADEH290397:0:Tyes---0
AEHR187272:0:Tyes2001200120010
AHYD196024:0:Tyes1110
AMET293826:0:Tyes000-
ANAE240017:0:Tyes---0
AORE350688:0:Tyes---0
APLE416269:0:Tyes---0
APLE434271:0:Tno---0
ASAL382245:5:Tyes0001
ASP1667:3:Tyes--02593
ASP232721:2:Tyes---0
ASP62928:0:Tyes000210
ASP62977:0:Tyes0003158
ASP76114:2:Tyes---0
BABO262698:0:Tno000-
BAMB339670:2:Tno00--
BAMB339670:3:Tno--6430
BAMB398577:2:Tno00--
BAMB398577:3:Tno--6320
BAMY326423:0:Tyes000-
BANT260799:0:Tno000-
BANT261594:2:Tno000-
BANT568206:2:Tyes000-
BANT592021:2:Tno000-
BAPH198804:0:Tyes---0
BAPH372461:0:Tyes---0
BBAC264462:0:Tyes---0
BBRO257310:0:Tyes0003602
BCAN483179:0:Tno000-
BCEN331271:0:Tno5435435430
BCEN331272:1:Tyes000-
BCEN331272:3:Tyes---0
BCER226900:1:Tyes000-
BCER288681:0:Tno000-
BCER315749:1:Tyes000-
BCER405917:1:Tyes000-
BCER572264:1:Tno000-
BCIC186490:0:Tyes---0
BCLA66692:0:Tyes308503084-
BHAL272558:0:Tyes000-
BJAP224911:0:Fyes31403140-0
BLIC279010:0:Tyes3087308730870
BLON206672:0:Tyes---0
BMAL243160:0:Tno000-
BMAL243160:1:Tno---0
BMAL320388:1:Tno--01809
BMAL320389:0:Tyes3503503500
BMEL224914:0:Tno000-
BMEL359391:0:Tno000-
BOVI236:0:Tyes000-
BPAR257311:0:Tno0002968
BPER257313:0:Tyes---0
BPET94624:0:Tyes1873187318730
BPSE272560:0:Tyes0001376
BPSE320372:0:Tno1276127612760
BPSE320373:0:Tno0001887
BPUM315750:0:Tyes0-0-
BSP107806:2:Tyes---0
BSP36773:1:Tyes00-974
BSP36773:2:Tyes--0-
BSP376:0:Tyes---0
BSUB:0:Tyes000-
BSUI204722:0:Tyes000-
BSUI470137:0:Tno000-
BTHA271848:0:Tno000-
BTHA271848:1:Tno---0
BTHE226186:0:Tyes---0
BTHU281309:1:Tno000-
BTHU412694:1:Tno000-
BVIE269482:7:Tyes6276276270
BWEI315730:4:Tyes000-
BXEN266265:0:Tyes---0
BXEN266265:1:Tyes000-
CACE272562:1:Tyes000-
CAULO:0:Tyes0---
CBEI290402:0:Tyes0371146154482
CBLO203907:0:Tyes---0
CBLO291272:0:Tno---0
CBOT36826:1:Tno00406-
CBOT441770:0:Tyes00404-
CBOT441771:0:Tno00410-
CBOT441772:1:Tno0418418-
CBOT498213:1:Tno0428428-
CBOT508765:1:Tyes0-01178
CBOT515621:2:Tyes0467467-
CBOT536232:0:Tno00490-
CBUR227377:1:Tyes---0
CBUR360115:1:Tno---0
CBUR434922:2:Tno---0
CDIF272563:1:Tyes0-24291176
CDIP257309:0:Tyes-399-0
CEFF196164:0:Fyes---0
CFET360106:0:Tyes---0
CGLU196627:0:Tyes---0
CHUT269798:0:Tyes---0
CHYD246194:0:Tyes000-
CJAP155077:0:Tyes0--486
CJEI306537:0:Tyes---0
CJEJ192222:0:Tyes---0
CJEJ195099:0:Tno---0
CKLU431943:1:Tyes-08231856
CMIC31964:2:Tyes---0
CMIC443906:2:Tyes---0
CMUR243161:1:Tyes---0
CNOV386415:0:Tyes000-
CPEL335992:0:Tyes---0
CPER195102:1:Tyes-00-
CPER195103:0:Tno-00-
CPER289380:3:Tyes-0--
CPHY357809:0:Tyes-02492-
CPSY167879:0:Tyes1110
CRUT413404:0:Tyes---0
CSAL290398:0:Tyes000466
CSP501479:6:Fyes000-
CSP501479:8:Fyes---0
CSP78:2:Tyes0-4111669
CTET212717:0:Tyes000-
CVES412965:0:Tyes---0
CVIO243365:0:Tyes2566256625660
DARO159087:0:Tyes1346134613460
DDES207559:0:Tyes-00-
DGEO319795:1:Tyes---0
DHAF138119:0:Tyes0002603
DNOD246195:0:Tyes---0
DRAD243230:3:Tyes--16210
DRED349161:0:Tyes001899
DSHI398580:5:Tyes1064106410640
DVUL882:1:Tyes000-
ECAR218491:0:Tyes1110
ECOL199310:0:Tno3488419502
ECOL316407:0:Tno2867355301
ECOL331111:6:Tno3181383401
ECOL362663:0:Tno2935357702
ECOL364106:1:Tno3263400602
ECOL405955:2:Tyes2942355201
ECOL409438:6:Tyes3206384401
ECOL413997:0:Tno2754337201
ECOL439855:4:Tno3032370002
ECOL469008:0:Tno639033783377
ECOL481805:0:Tno618034553454
ECOL585034:0:Tno2976362103
ECOL585035:0:Tno3121377403
ECOL585055:0:Tno0391402
ECOL585056:2:Tno3351400902
ECOL585057:0:Tno3366401402
ECOL585397:0:Tno3400404802
ECOL83334:0:Tno0446601
ECOLI:0:Tno2931356102
ECOO157:0:Tno0449201
EFER585054:1:Tyes0344403
ESP42895:1:Tyes5390539540
FALN326424:0:Tyes---0
FNUC190304:0:Tyes---0
FPHI484022:1:Tyes---0
FRANT:0:Tno---0
FSP106370:0:Tyes---0
FSP1855:0:Tyes---0
FTUL351581:0:Tno---0
FTUL393011:0:Tno---0
FTUL393115:0:Tyes---0
FTUL401614:0:Tyes---0
FTUL418136:0:Tno---0
FTUL458234:0:Tno---0
GFOR411154:0:Tyes-0-523
GKAU235909:1:Tyes016571657-
GMET269799:1:Tyes---0
GSUL243231:0:Tyes0001289
GTHE420246:1:Tyes0-0-
GURA351605:0:Tyes002036-
HACI382638:1:Tyes---0
HARS204773:0:Tyes---0
HCHE349521:0:Tyes0001
HDUC233412:0:Tyes---0
HHAL349124:0:Tyes---0
HHEP235279:0:Tyes---0
HINF281310:0:Tyes0--1682
HINF374930:0:Tyes0--161
HINF71421:0:Tno0--1149
HMOD498761:0:Tyes1656165616560
HNEP81032:0:Tyes---0
HPY:0:Tno---0
HPYL357544:1:Tyes---0
HSOM205914:1:Tyes0--1081
HSOM228400:0:Tno902--0
ILOI283942:0:Tyes0001
JSP290400:1:Tyes0001918
JSP375286:0:Tyes---0
KPNE272620:2:Tyes1050010501051
KRAD266940:2:Fyes0--1076
LCHO395495:0:Tyes---0
LINN272626:1:Tno000-
LMON169963:0:Tno000-
LMON265669:0:Tyes0-0-
LPNE272624:0:Tno---0
LPNE297245:1:Fno---0
LPNE297246:1:Fyes---0
LPNE400673:0:Tno---0
LWEL386043:0:Tyes000-
LXYL281090:0:Tyes283--0
MABS561007:1:Tyes---0
MAEO419665:0:Tyes---0
MAQU351348:2:Tyes2910002932
MAVI243243:0:Tyes---0
MBOV233413:0:Tno---0
MBOV410289:0:Tno---0
MCAP243233:0:Tyes---0
MFLA265072:0:Tyes---0
MGIL350054:3:Tyes-0-2779
MJAN243232:2:Tyes---0
MLEP272631:0:Tyes---0
MLOT266835:0:Tyes---0
MLOT266835:2:Tyes000-
MMAG342108:0:Tyes000-
MMAR394221:0:Tyes0---
MPET420662:1:Tyes---0
MSME246196:0:Tyes0218519963701
MSP164756:1:Tno40650-3033
MSP164757:0:Tno44290-3034
MSP189918:2:Tyes41350-3075
MSP266779:3:Tyes0003089
MSP400668:0:Tyes0002254
MSP409:2:Tyes---0
MSUC221988:0:Tyes0--820
MTBCDC:0:Tno---0
MTBRV:0:Tno---0
MTHE264732:0:Tyes000-
MTUB336982:0:Tno---0
MTUB419947:0:Tyes---0
MVAN350058:0:Tyes-0-2767
NEUR228410:0:Tyes---0
NEUT335283:2:Tyes---0
NFAR247156:2:Tyes859--0
NGON242231:0:Tyes7107107100
NHAM323097:2:Tyes---0
NMEN122586:0:Tno3553553550
NMEN122587:0:Tyes4194194190
NMEN272831:0:Tno2962962960
NMEN374833:0:Tno3633633630
NMUL323848:3:Tyes---0
NOCE323261:1:Tyes---0
NSP35761:0:Tyes---0
NSP35761:1:Tyes2068-0-
NWIN323098:0:Tyes---0
OANT439375:4:Tyes000-
OANT439375:5:Tyes---0
OCAR504832:0:Tyes---0
OIHE221109:0:Tyes000-
PACN267747:0:Tyes---0
PAER208963:0:Tyes60200254
PAER208964:0:Tno59100248
PARC259536:0:Tyes---0
PATL342610:0:Tyes2262226222620
PCRY335284:1:Tyes---0
PDIS435591:0:Tyes---0
PENT384676:0:Tyes0004123
PFLU205922:0:Tyes2952952950
PFLU216595:1:Tyes1307130713070
PFLU220664:0:Tyes1419003118
PGIN242619:0:Tyes---0
PHAL326442:1:Tyes0001
PING357804:0:Tyes1110
PINT246198:1:Tyes---0
PLUM243265:0:Fyes1110
PMEN399739:0:Tyes034673467369
PMUL272843:1:Tyes---0
PNAP365044:4:Tyes---0
PNAP365044:8:Tyes-0--
PPRO298386:2:Tyes1110
PPUT160488:0:Tno3395438043800
PPUT351746:0:Tyes1666427142710
PPUT76869:0:Tno1838442644260
PRUM264731:0:Tyes---0
PSP117:0:Tyes---0
PSP296591:2:Tyes14212810410
PSP312153:0:Tyes---0
PSP56811:2:Tyes---0
PSTU379731:0:Tyes0288828883405
PSYR205918:0:Tyes---0
PSYR223283:2:Tyes---0
PTHE370438:0:Tyes101-
RCAS383372:0:Tyes---0
RDEN375451:4:Tyes000-
RETL347834:4:Tyes-0165-
RETL347834:5:Tyes0---
REUT264198:2:Tyes017251725-
REUT264198:3:Tyes---0
REUT381666:1:Tyes233800-
REUT381666:2:Tyes---0
RFER338969:1:Tyes0002010
RLEG216596:5:Tyes-0376-
RLEG216596:6:Tyes0---
RMET266264:1:Tyes1630163016300
RPAL258594:0:Tyes---0
RPAL316055:0:Tyes---0
RPAL316057:0:Tyes---0
RPAL316058:0:Tyes---0
RPOM246200:0:Tyes---0
RPOM246200:1:Tyes000-
RRUB269796:1:Tyes000-
RSAL288705:0:Tyes1217--0
RSOL267608:1:Tyes000544
RSP101510:2:Fyes-00-
RSP101510:3:Fyes343--0
RSP357808:0:Tyes---0
RSPH272943:2:Tyes---0
RSPH272943:4:Tyes000-
RSPH349101:2:Tno000-
RSPH349102:5:Tyes000-
RXYL266117:0:Tyes000-
SAGA205921:0:Tno0---
SAGA208435:0:Tno0---
SAGA211110:0:Tyes0---
SARE391037:0:Tyes---0
SAVE227882:1:Fyes6048604804775
SBAL399599:3:Tyes1110
SBAL402882:1:Tno1110
SBOY300268:1:Tyes0331901
SCO:2:Fyes7171710
SDEG203122:0:Tyes0-3201645
SDEN318161:0:Tyes1110
SDYS300267:1:Tyes0365301
SENT209261:0:Tno0350201
SENT220341:0:Tno0355601
SENT295319:0:Tno0325501
SENT321314:2:Tno0352601
SENT454169:2:Tno0371601
SERY405948:0:Tyes2287228722870
SFLE198214:0:Tyes2803340601
SFLE373384:0:Tno2779362801
SFUM335543:0:Tyes000-
SGLO343509:3:Tyes0001
SHAL458817:0:Tyes0001
SHIGELLA:0:Tno2732356501
SLAC55218:1:Fyes000-
SLOI323850:0:Tyes1110
SMED366394:3:Tyes000-
SMEL266834:2:Tyes000-
SONE211586:1:Tyes0001
SPEA398579:0:Tno0001
SPNE488221:0:Tno000-
SPRO399741:1:Tyes1110
SPYO160490:0:Tno---0
SPYO193567:0:Tno---0
SPYO198466:0:Tno---0
SPYO286636:0:Tno---0
SPYO293653:0:Tno---0
SPYO319701:0:Tyes---0
SPYO370552:0:Tno00-329
SSAP342451:2:Tyes00--
SSED425104:0:Tyes0001
SSOL273057:0:Tyes---0
SSON300269:1:Tyes0349901
SSP292414:2:Tyes000148
SSP644076:6:Fyes000185
SSP94122:1:Tyes0001
STHE292459:0:Tyes000-
STRO369723:0:Tyes---0
STYP99287:1:Tyes0351501
TCRU317025:0:Tyes---0
TDEN292415:0:Tyes---0
TPSE340099:0:Tyes---0
TROS309801:0:Tyes--0-
TSP1755:0:Tyes---0
TTHE262724:1:Tyes---0
TTHE300852:2:Tyes---0
TTUR377629:0:Tyes0--131
TWHI203267:0:Tyes---0
TWHI218496:0:Tno---0
VCHO:0:Tyes1110
VCHO345073:1:Tno1110
VEIS391735:1:Tyes20170-381
VFIS312309:2:Tyes1110
VPAR223926:1:Tyes1110
VVUL196600:2:Tyes1110
VVUL216895:1:Tno0001
WSUC273121:0:Tyes---0
XAUT78245:1:Tyes4154372741540
XAXO190486:0:Tyes---0
XCAM190485:0:Tyes---0
XCAM314565:0:Tno---0
XCAM316273:0:Tno---0
XCAM487884:0:Tno---0
XFAS160492:2:Tno---0
XFAS183190:1:Tyes---0
XFAS405440:0:Tno---0
XORY291331:0:Tno---0
XORY342109:0:Tyes---0
XORY360094:0:Tno---0
YENT393305:1:Tyes0001
YPES187410:5:Tno0001
YPES214092:3:Tno1110
YPES349746:2:Tno1110
YPES360102:3:Tyes1110
YPES377628:2:Tno0001
YPES386656:2:Tno0001
YPSE273123:2:Tno0001
YPSE349747:2:Tno1110



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