CANDIDATE ID: 16

CANDIDATE ID: 16

NUMBER OF GENES: 12
AVERAGE SCORE:    9.9966494e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G379 (fliK) (b1943)
   Products of gene:
     - G379-MONOMER (flagellar hook-length control protein FliK)

- G378 (fliJ) (b1942)
   Products of gene:
     - G378-MONOMER (flagellar biosynthesis protein FliJ)
     - CPLX0-7451 (Flagellar Export Apparatus)
     - CPLX0-7452 (Flagellum)

- G377 (fliI) (b1941)
   Products of gene:
     - G377-MONOMER (flagellum-specific ATP synthase FliI)
     - CPLX0-7451 (Flagellar Export Apparatus)
     - CPLX0-7452 (Flagellum)

- EG11977 (fliR) (b1950)
   Products of gene:
     - EG11977-MONOMER (flagellar biosynthesis protein FliR)
     - CPLX0-7451 (Flagellar Export Apparatus)
     - CPLX0-7452 (Flagellum)

- EG11976 (fliQ) (b1949)
   Products of gene:
     - EG11976-MONOMER (flagellar biosynthesis protein FliQ)
     - CPLX0-7451 (Flagellar Export Apparatus)
     - CPLX0-7452 (Flagellum)

- EG11975 (fliP) (b1948)
   Products of gene:
     - EG11975-MONOMER (flagellar biosynthesis protein FliP)
     - CPLX0-7451 (Flagellar Export Apparatus)
     - CPLX0-7452 (Flagellum)

- EG11656 (fliH) (b1940)
   Products of gene:
     - EG11656-MONOMER (flagellar biosynthesis protein FliH)
     - CPLX0-7451 (Flagellar Export Apparatus)
     - CPLX0-7452 (Flagellum)

- EG11654 (fliG) (b1939)
   Products of gene:
     - FLIG-FLAGELLAR-SWITCH-PROTEIN (flagellar motor switch protein FliG)
     - CPLX0-7450 (Flagellar Motor Switch Complex)
     - FLAGELLAR-MOTOR-COMPLEX (Flagellar Motor Complex)
     - CPLX0-7452 (Flagellum)

- EG11347 (fliF) (b1938)
   Products of gene:
     - FLIF-FLAGELLAR-MS-RING (flagellar M-ring protein FliF; basal-body MS(membrane and supramembrane)-ring and collar protein)
     - FLAGELLAR-MOTOR-COMPLEX (Flagellar Motor Complex)
     - CPLX0-7452 (Flagellum)

- EG11346 (fliE) (b1937)
   Products of gene:
     - EG11346-MONOMER (flagellar basal-body protein FliE)
     - FLAGELLAR-MOTOR-COMPLEX (Flagellar Motor Complex)
     - CPLX0-7452 (Flagellum)

- EG10324 (fliN) (b1946)
   Products of gene:
     - FLIN-FLAGELLAR-C-RING-SWITCH (flagellar motor switch protein FliN)
     - CPLX0-7450 (Flagellar Motor Switch Complex)
     - FLAGELLAR-MOTOR-COMPLEX (Flagellar Motor Complex)
     - CPLX0-7452 (Flagellum)

- EG10323 (fliM) (b1945)
   Products of gene:
     - FLIM-FLAGELLAR-C-RING-SWITCH (flagellar motor switch protein FliM)
     - CPLX0-7450 (Flagellar Motor Switch Complex)
     - FLAGELLAR-MOTOR-COMPLEX (Flagellar Motor Complex)
     - CPLX0-7452 (Flagellum)



Back to top


ORGANISMS CONTAINING AT LEAST 10 GENES FROM THE GROUP:

Total number of orgs: 137
Effective number of orgs (counting one per cluster within 468 clusters): 88

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 3175812
YPSE273123 ncbi Yersinia pseudotuberculosis IP 3295312
YPES386656 ncbi Yersinia pestis Pestoides F12
YPES377628 ncbi Yersinia pestis Nepal51612
YPES360102 ncbi Yersinia pestis Antiqua12
YPES349746 ncbi Yersinia pestis Angola10
YPES214092 ncbi Yersinia pestis CO9212
YPES187410 ncbi Yersinia pestis KIM 1012
YENT393305 ncbi Yersinia enterocolitica enterocolitica 808112
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A10
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 31101810
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC1033110
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-1010
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 30610
VVUL216895 ncbi Vibrio vulnificus CMCP611
VVUL196600 ncbi Vibrio vulnificus YJ01611
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 221063312
VFIS312309 ncbi Vibrio fischeri ES11412
VCHO345073 ncbi Vibrio cholerae O39511
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N1696111
TTUR377629 ncbi Teredinibacter turnerae T790112
TDEN292415 ncbi Thiobacillus denitrificans ATCC 2525912
TCRU317025 ncbi Thiomicrospira crunogena XCL-211
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT212
SSP94122 ncbi Shewanella sp. ANA-311
SSON300269 ncbi Shigella sonnei Ss04612
SSED425104 ncbi Shewanella sediminis HAW-EB312
SPRO399741 ncbi Serratia proteamaculans 56812
SPEA398579 ncbi Shewanella pealeana ATCC 70034512
SONE211586 ncbi Shewanella oneidensis MR-112
SLOI323850 ncbi Shewanella loihica PV-411
SHAL458817 ncbi Shewanella halifaxensis HAW-EB412
SGLO343509 ncbi Sodalis glossinidius morsitans12
SFLE373384 ncbi Shigella flexneri 5 str. 840110
SFLE198214 ncbi Shigella flexneri 2a str. 30111
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL47612
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B6712
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 915012
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT1812
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty212
SDEN318161 ncbi Shewanella denitrificans OS21712
SDEG203122 ncbi Saccharophagus degradans 2-4011
SBAL402882 ncbi Shewanella baltica OS18512
SBAL399599 ncbi Shewanella baltica OS19512
RSOL267608 ncbi Ralstonia solanacearum GMI100012
RMET266264 ncbi Ralstonia metallidurans CH3412
RFER338969 ncbi Rhodoferax ferrireducens T11811
REUT381666 ncbi Ralstonia eutropha H1612
REUT264198 ncbi Ralstonia eutropha JMP13412
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC300011
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a10
PSTU379731 ncbi Pseudomonas stutzeri A150112
PPUT76869 ncbi Pseudomonas putida GB-112
PPUT351746 ncbi Pseudomonas putida F112
PPUT160488 ncbi Pseudomonas putida KT244012
PPRO298386 ncbi Photobacterium profundum SS912
PMEN399739 ncbi Pseudomonas mendocina ymp12
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO112
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC12511
PFLU220664 ncbi Pseudomonas fluorescens Pf-512
PFLU216595 ncbi Pseudomonas fluorescens SBW2512
PFLU205922 ncbi Pseudomonas fluorescens Pf0-111
PENT384676 ncbi Pseudomonas entomophila L4811
PCAR338963 ncbi Pelobacter carbinolicus DSM 238010
PATL342610 ncbi Pseudoalteromonas atlantica T6c11
PAER208964 ncbi Pseudomonas aeruginosa PAO111
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA1411
NOCE323261 ncbi Nitrosococcus oceani ATCC 1970712
NMUL323848 ncbi Nitrosospira multiformis ATCC 2519611
NEUT335283 ncbi Nitrosomonas eutropha C9112
NEUR228410 ncbi Nitrosomonas europaea ATCC 1971812
MTHE264732 ncbi Moorella thermoacetica ATCC 3907310
MSP400668 ncbi Marinomonas sp. MWYL112
MPET420662 ncbi Methylibium petroleiphilum PM112
MFLA265072 ncbi Methylobacillus flagellatus KT12
MAQU351348 ncbi Marinobacter aquaeolei VT812
LPNE400673 ncbi Legionella pneumophila Corby10
LPNE297246 ncbi Legionella pneumophila Paris10
LPNE297245 ncbi Legionella pneumophila Lens10
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 110
LCHO395495 ncbi Leptothrix cholodnii SP-612
JSP375286 ncbi Janthinobacterium sp. Marseille12
ILOI283942 ncbi Idiomarina loihiensis L2TR11
HHAL349124 ncbi Halorhodospira halophila SL111
HCHE349521 ncbi Hahella chejuensis KCTC 239612
HARS204773 ncbi Herminiimonas arsenicoxydans12
ESP42895 Enterobacter sp.12
EFER585054 ncbi Escherichia fergusonii ATCC 3546912
ECOO157 ncbi Escherichia coli O157:H7 EDL93312
ECOL83334 Escherichia coli O157:H712
ECOL585397 ncbi Escherichia coli ED1a12
ECOL585057 ncbi Escherichia coli IAI3911
ECOL585056 ncbi Escherichia coli UMN02612
ECOL585055 ncbi Escherichia coli 5598912
ECOL585035 ncbi Escherichia coli S8812
ECOL585034 ncbi Escherichia coli IAI112
ECOL481805 ncbi Escherichia coli ATCC 873912
ECOL469008 ncbi Escherichia coli BL21(DE3)12
ECOL439855 ncbi Escherichia coli SMS-3-512
ECOL409438 ncbi Escherichia coli SE1112
ECOL405955 ncbi Escherichia coli APEC O112
ECOL364106 ncbi Escherichia coli UTI8912
ECOL362663 ncbi Escherichia coli 53612
ECOL331111 ncbi Escherichia coli E24377A12
ECOL316407 ncbi Escherichia coli K-12 substr. W311012
ECOL199310 ncbi Escherichia coli CFT07312
ECAR218491 ncbi Pectobacterium atrosepticum SCRI104312
DRED349161 ncbi Desulfotomaculum reducens MI-110
DARO159087 ncbi Dechloromonas aromatica RCB12
CVIO243365 ncbi Chromobacterium violaceum ATCC 1247212
CSAL290398 ncbi Chromohalobacter salexigens DSM 304312
CPSY167879 ncbi Colwellia psychrerythraea 34H11
CJAP155077 Cellvibrio japonicus12
BVIE269482 ncbi Burkholderia vietnamiensis G412
BTHA271848 ncbi Burkholderia thailandensis E26412
BSP36773 Burkholderia sp.12
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)12
BPSE320373 ncbi Burkholderia pseudomallei 66812
BPSE320372 ncbi Burkholderia pseudomallei 1710b12
BPSE272560 ncbi Burkholderia pseudomallei K9624312
BPET94624 Bordetella petrii12
BPER257313 ncbi Bordetella pertussis Tohama I11
BMAL320389 ncbi Burkholderia mallei NCTC 1024712
BMAL320388 ncbi Burkholderia mallei SAVP111
BMAL243160 ncbi Burkholderia mallei ATCC 2334412
BCEN331272 ncbi Burkholderia cenocepacia HI242412
BCEN331271 ncbi Burkholderia cenocepacia AU 105412
BBRO257310 ncbi Bordetella bronchiseptica RB5012
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)12
BAMB398577 ncbi Burkholderia ambifaria MC40-612
BAMB339670 ncbi Burkholderia ambifaria AMMD12
ASP62928 ncbi Azoarcus sp. BH7212
ASAL382245 ncbi Aeromonas salmonicida salmonicida A44912
AHYD196024 Aeromonas hydrophila dhakensis12
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-112
ABAU360910 ncbi Bordetella avium 197N12
AAVE397945 ncbi Acidovorax citrulli AAC00-110


Names of the homologs of the genes in the group in each of these orgs
  G379   G378   G377   EG11977   EG11976   EG11975   EG11656   EG11654   EG11347   EG11346   EG10324   EG10323   
YPSE349747 YPSIP31758_2295YPSIP31758_2294YPSIP31758_2293YPSIP31758_2304YPSIP31758_2303YPSIP31758_2302YPSIP31758_2292YPSIP31758_2291YPSIP31758_2290YPSIP31758_2289YPSIP31758_2300YPSIP31758_2299
YPSE273123 YPTB1698YPTB1699YPTB1700YPTB1691YPTB1692YPTB1693YPTB1701YPTB1702YPTB1703YPTB1704YPTB1695YPTB1696
YPES386656 YPDSF_1299YPDSF_1298YPDSF_1297YPDSF_1306YPDSF_1305YPDSF_1304YPDSF_1296YPDSF_1295YPDSF_1294YPDSF_1293YPDSF_1302YPDSF_1301
YPES377628 YPN_2298YPN_2297YPN_2296YPN_2305YPN_2304YPN_2303YPN_2295YPN_2294YPN_2293YPN_2292YPN_2301YPN_2300
YPES360102 YPA_1201YPA_1202YPA_1203YPA_1194YPA_1195YPA_1196YPA_1204YPA_1205YPA_1206YPA_1207YPA_1198YPA_1199
YPES349746 YPANGOLA_A2010YPANGOLA_A2011YPANGOLA_A0241YPANGOLA_A0240YPANGOLA_A0239YPANGOLA_A2012YPANGOLA_A2013YPANGOLA_A2014YPANGOLA_A2015YPANGOLA_A0238
YPES214092 YPO1825YPO1826YPO1827YPO1819YPO1820AYPO1820YPO1828YPO1829YPO1830YPO1831YPO1822YPO1823
YPES187410 Y2481Y2480Y2479Y2488Y2487Y2486Y2478Y2477Y2476Y2475Y2484Y2483
YENT393305 YE2542YE2541YE2540YE2549YE2548YE2547YE2539YE2538YE2537YE2536YE2545YE2544
XORY360094 XOOORF_2838XOOORF_2836XOOORF_2846XOOORF_2845XOOORF_2843XOOORF_2834XOOORF_2833XOOORF_2832XOOORF_2841XOOORF_2840
XORY342109 XOO2465XOO2463XOO2472XOO2471XOO2470XOO2461XOO2460XOO2459XOO2468XOO2467
XORY291331 XOO2606XOO2604XOO2613XOO2612XOO2611XOO2602XOO2601XOO2600XOO2609XOO2608
XCAM316273 XCAORF_2188XCAORF_2191XCAORF_2181XCAORF_2183XCAORF_2192XCAORF_2193XCAORF_2194XCAORF_2195XCAORF_2185XCAORF_2186
XAXO190486 XAC1949XAC1951XAC1941XAC1942XAC1944XAC1953XAC1954XAC1955XAC1946XAC1947
VVUL216895 VV1_1939VV1_1938VV1_1947VV1_1946VV1_1945VV1_1937VV1_1936VV1_1935VV1_1934VV1_1943VV1_1942
VVUL196600 VV2477VV2478VV2469VV2470VV2471VV2479VV2480VV2481VV2482VV2473VV2474
VPAR223926 VP2244VP2245VP2246VP2237VP2238VP2239VP2247VP2248VPA1536VP2250VP2241VP2242
VFIS312309 VF1847VF1848VF1849VF1840VF1841VF1842VF1850VF1851VF1852VF1853VF1844VF1845
VCHO345073 VC0395_A1713VC0395_A1714VC0395_A1703VC0395_A1704VC0395_A1705VC0395_A1715VC0395_A1716VC0395_A1717VC0395_A1718VC0395_A1708VC0395_A1709
VCHO VC2129VC2130VC2121VC2122VC2123VC2131VC2132VC2133VC2134VC2125VC2126
TTUR377629 TERTU_1348TERTU_1335TERTU_1334TERTU_1355TERTU_1354TERTU_1353TERTU_1333TERTU_1332TERTU_1331TERTU_1330TERTU_1351TERTU_1350
TDEN292415 TBD_1605TBD_1604TBD_1603TBD_1612TBD_1611TBD_1610TBD_1090TBD_1601TBD_1600TBD_1599TBD_1608TBD_1607
TCRU317025 TCR_1437TCR_1438TCR_1439TCR_0742TCR_0741TCR_0740TCR_1441TCR_1442TCR_1443TCR_1431TCR_1432
STYP99287 STM1974STM1973STM1972STM1981STM1980STM1979STM1971STM1970STM1969STM1968STM1977STM1976
SSP94122 SHEWANA3_1346SHEWANA3_1345SHEWANA3_1354SHEWANA3_1353SHEWANA3_1352SHEWANA3_1344SHEWANA3_1343SHEWANA3_1342SHEWANA3_1341SHEWANA3_1350SHEWANA3_1349
SSON300269 SSO_2001SSO_2000SSO_1999SSO_2008SSO_2007SSO_2006SSO_1998SSO_1997SSO_1996SSO_1995SSO_2004SSO_2003
SSED425104 SSED_3061SSED_3062SSED_3063SSED_3054SSED_0084SSED_3056SSED_3064SSED_3065SSED_0077SSED_3067SSED_3058SSED_3059
SPRO399741 SPRO_2952SPRO_2951SPRO_2950SPRO_2959SPRO_2958SPRO_2957SPRO_2949SPRO_2948SPRO_2947SPRO_2946SPRO_2955SPRO_2954
SPEA398579 SPEA_1366SPEA_1365SPEA_1364SPEA_1373SPEA_0090SPEA_1371SPEA_1363SPEA_1362SPEA_0083SPEA_1360SPEA_1369SPEA_1368
SONE211586 SO_3223SO_3224SO_3225SO_3216SO_3217SO_3218SO_3226SO_3227SO_3228SO_3229SO_3220SO_3221
SLOI323850 SHEW_1371SHEW_1370SHEW_1369SHEW_1378SHEW_1376SHEW_1368SHEW_1367SHEW_1366SHEW_1365SHEW_1374SHEW_1373
SHAL458817 SHAL_4264SHAL_1452SHAL_1451SHAL_1460SHAL_4232SHAL_1458SHAL_1450SHAL_1449SHAL_4239SHAL_1447SHAL_1456SHAL_1455
SGLO343509 SG0048SG0049SG0050SG2058SG0042SG2056SG0051SG0052SG0053SG0054SG2054SG2053
SFLE373384 SFV_1986SFV_1984SFV_1993SFV_1992SFV_1991SFV_1983SFV_1982SFV_1980SFV_1989SFV_1988
SFLE198214 AAN43535.1AAN43534.1AAN43533.1AAN43542.1AAN43541.1AAN43540.1AAN43532.1AAN43531.1AAN43530.1AAN43538.1AAN43537.1
SENT454169 SEHA_C2190SEHA_C2189SEHA_C2188SEHA_C2197SEHA_C2196SEHA_C2195SEHA_C2187SEHA_C2186SEHA_C2185SEHA_C2183SEHA_C2193SEHA_C2192
SENT321314 SCH_1979SCH_1978SCH_1977SCH_1986SCH_1985SCH_1984SCH_1976SCH_1975SCH_1974SCH_1972SCH_1982SCH_1981
SENT295319 SPA0896SPA0897SPA0898SPA0889SPA0890SPA0891SPA0899SPA0900SPA0901SPA0902SPA0893SPA0894
SENT220341 STY2182STY2181STY2180STY2189STY2188STY2187STY2179STY2178STY2177STY2176STY2185STY2184
SENT209261 T0903T0904T0905T0896T0897T0898T0906T0907T0908T0909T0900T0901
SDEN318161 SDEN_1329SDEN_1328SDEN_1327SDEN_1338SDEN_3665SDEN_1336SDEN_1326SDEN_1325SDEN_3659SDEN_0052SDEN_1334SDEN_1331
SDEG203122 SDE_2177SDE_2185SDE_2170SDE_2171SDE_2172SDE_2186SDE_2187SDE_2188SDE_2189SDE_2174SDE_2175
SBAL402882 SHEW185_2931SHEW185_2932SHEW185_2933SHEW185_2924SHEW185_2925SHEW185_2926SHEW185_2934SHEW185_2935SHEW185_2936SHEW185_2937SHEW185_2928SHEW185_2929
SBAL399599 SBAL195_3063SBAL195_3064SBAL195_3065SBAL195_3056SBAL195_3057SBAL195_3058SBAL195_3066SBAL195_3067SBAL195_3068SBAL195_3069SBAL195_3060SBAL195_3061
RSOL267608 RSP0395RSP0394RSP0393RSP0373RSP0374RSP0375RSP0392RSP0391RSP0390RSP0389RSP0377RSP0378
RMET266264 RMET_5266RMET_5265RMET_5264RMET_5303RMET_5302RMET_5301RMET_5263RMET_5262RMET_5261RMET_5259RMET_5299RMET_5298
RFER338969 RFER_0554RFER_0553RFER_0562RFER_0561RFER_0560RFER_0552RFER_0551RFER_0550RFER_0549RFER_0558RFER_0557
REUT381666 H16_B2373H16_B2372H16_B2371H16_B0561H16_B0562H16_B0563H16_B2370H16_B2369H16_B2368H16_B2367H16_B0565H16_B0566
REUT264198 REUT_B5102REUT_B5101REUT_B5100REUT_B5879REUT_B5880REUT_B5881REUT_B5099REUT_B5098REUT_B5097REUT_B5096REUT_B5883REUT_B5884
PSYR223283 PSPTO_1962PSPTO_1961PSPTO_1974PSPTO_1973PSPTO_1972PSPTO_1960PSPTO_1959PSPTO_1958PSPTO_1957PSPTO_1970PSPTO_1969
PSYR205918 PSYR_3453PSYR_3454PSYR_3442PSYR_3443PSYR_3444PSYR_3456PSYR_3457PSYR_3458PSYR_3446PSYR_3447
PSTU379731 PST_2582PST_2586PST_2587PST_2575PST_2576PST_2577PST_2588PST_2589PST_2590PST_2591PST_2579PST_2580
PPUT76869 PPUTGB1_3922PPUTGB1_3926PPUTGB1_3927PPUTGB1_3915PPUTGB1_3916PPUTGB1_3917PPUTGB1_3928PPUTGB1_3929PPUTGB1_3930PPUTGB1_3931PPUTGB1_3919PPUTGB1_3920
PPUT351746 PPUT_1506PPUT_1502PPUT_1501PPUT_1513PPUT_1512PPUT_1511PPUT_1500PPUT_1499PPUT_1498PPUT_1497PPUT_1509PPUT_1508
PPUT160488 PP_4361PP_4365PP_4366PP_4353PP_4354PP_4355PP_4367PP_4368PP_4369PP_4370PP_4357PP_4358
PPRO298386 PBPRA0928PBPRA0927PBPRA0926PBPRA0934PBPRA0015PBPRA0932PBPRA0925PBPRA0924PBPRA0022PBPRA0922PBPRA0931PBPRA0930
PMEN399739 PMEN_2817PMEN_2821PMEN_2822PMEN_2810PMEN_2811PMEN_2812PMEN_2823PMEN_2824PMEN_2825PMEN_2826PMEN_2814PMEN_2815
PLUM243265 PLU1943PLU1944PLU1945PLU1936PLU1937PLU1938PLU1946PLU1947PLU1948PLU1949PLU1940PLU1941
PHAL326442 PSHAA0797PSHAA0796PSHAA0795PSHAA0804PSHAA0802PSHAA0794PSHAA0793PSHAA0792PSHAA0791PSHAA0800PSHAA0799
PFLU220664 PFL_1646PFL_1642PFL_1641PFL_1653PFL_1652PFL_1651PFL_1640PFL_1639PFL_1638PFL_1637PFL_1649PFL_1648
PFLU216595 PFLU4430PFLU4435PFLU4436PFLU4423PFLU4424PFLU4425PFLU4437PFLU4438PFLU4439PFLU4440PFLU4427PFLU4428
PFLU205922 PFL_1540PFL_1539PFL_1551PFL_1550PFL_1549PFL_1538PFL_1537PFL_1536PFL_1535PFL_1547PFL_1546
PENT384676 PSEEN3812PSEEN3813PSEEN3801PSEEN3802PSEEN3803PSEEN3814PSEEN3815PSEEN3816PSEEN3817PSEEN3805PSEEN3806
PCAR338963 PCAR_1186PCAR_1189PCAR_1164PCAR_1165PCAR_1166PCAR_1191PCAR_1192PCAR_1193PCAR_1168PCAR_1169
PATL342610 PATL_3042PATL_3044PATL_3035PATL_3036PATL_3037PATL_3045PATL_3046PATL_3047PATL_3048PATL_3039PATL_3040
PAER208964 PA1105PA1104PA1448PA1447PA1446PA1103PA1102PA1101PA1100PA1444PA1443
PAER208963 PA14_50080PA14_50100PA14_45740PA14_45760PA14_45770PA14_50110PA14_50130PA14_50140PA14_50160PA14_45790PA14_45800
NOCE323261 NOC_2354NOC_2355NOC_2356NOC_2160NOC_2161NOC_2162NOC_2357NOC_2358NOC_2359NOC_2360NOC_2164NOC_2165
NMUL323848 NMUL_A1349NMUL_A1348NMUL_A1357NMUL_A1356NMUL_A1355NMUL_A1347NMUL_A1346NMUL_A1345NMUL_A1344NMUL_A1353NMUL_A1352
NEUT335283 NEUT_0740NEUT_0741NEUT_0742NEUT_2061NEUT_2060NEUT_2059NEUT_0743NEUT_0744NEUT_0745NEUT_0748NEUT_2057NEUT_2056
NEUR228410 NE2088NE2087NE2086NE0459NE0460NE0461NE2085NE2084NE2083NE2080NE0463NE0464
MTHE264732 MOTH_0774MOTH_0788MOTH_0787MOTH_0786MOTH_0773MOTH_0772MOTH_0771MOTH_0770MOTH_0784MOTH_0804
MSP400668 MMWYL1_3439MMWYL1_3444MMWYL1_3445MMWYL1_3432MMWYL1_3433MMWYL1_3434MMWYL1_3446MMWYL1_3447MMWYL1_3448MMWYL1_3449MMWYL1_3436MMWYL1_3437
MPET420662 MPE_A0570MPE_A0569MPE_A0568MPE_A0577MPE_A0576MPE_A0575MPE_A0567MPE_A0566MPE_A0565MPE_A0564MPE_A0573MPE_A0572
MFLA265072 MFLA_1973MFLA_1974MFLA_1975MFLA_1966MFLA_1967MFLA_1968MFLA_1976MFLA_1977MFLA_1978MFLA_1979MFLA_1970MFLA_1971
MAQU351348 MAQU_1989MAQU_1993MAQU_1994MAQU_1982MAQU_1983MAQU_1984MAQU_1995MAQU_1996MAQU_1997MAQU_1998MAQU_1986MAQU_1987
LPNE400673 LPC_1119LPC_1198LPC_1228LPC_1229LPC_1230LPC_1200LPC_1201LPC_1202LPC_1232LPC_1233
LPNE297246 LPP1657LPP1721LPP1751LPP1752LPP1753LPP1723LPP1724LPP1725LPP1755LPP1756
LPNE297245 LPL1651LPL1721LPL1751LPL1752LPL1753LPL1723LPL1724LPL1725LPL1755LPL1756
LPNE272624 LPG1688LPG1757LPG1787LPG1788LPG1789LPG1759LPG1760LPG1761LPG1791LPG1792
LCHO395495 LCHO_1021LCHO_1020LCHO_1019LCHO_1028LCHO_1027LCHO_1026LCHO_1018LCHO_1017LCHO_1016LCHO_1015LCHO_1024LCHO_1023
JSP375286 MMA_1436MMA_1437MMA_1438MMA_1429MMA_1430MMA_1431MMA_1439MMA_1440MMA_1441MMA_1442MMA_1433MMA_1434
ILOI283942 IL1195IL1196IL1197IL1188IL1189IL1190IL1199IL1200IL1201IL1192IL1193
HHAL349124 HHAL_0494HHAL_0495HHAL_0482HHAL_0483HHAL_0484HHAL_0496HHAL_0497HHAL_0498HHAL_0499HHAL_0486HHAL_0487
HCHE349521 HCH_05183HCH_05189HCH_05190HCH_05176HCH_05177HCH_05178HCH_05191HCH_05192HCH_05194HCH_04079HCH_05180HCH_05181
HARS204773 HEAR1881HEAR1880HEAR1879HEAR1889HEAR1888HEAR1887HEAR1878HEAR1877HEAR1876HEAR1874HEAR1885HEAR1884
ESP42895 ENT638_2534ENT638_2533ENT638_2532ENT638_2541ENT638_2540ENT638_2539ENT638_2531ENT638_2530ENT638_2529ENT638_2528ENT638_2537ENT638_2536
EFER585054 EFER_1928EFER_1927EFER_1926EFER_1935EFER_1934EFER_1933EFER_1925EFER_1924EFER_1923EFER_1921EFER_1931EFER_1930
ECOO157 FLIKFLIJFLIIFLIRFLIQFLIPFLIHFLIGFLIFFLIEFLINFLIM
ECOL83334 ECS2682ECS2681ECS2680ECS2689ECS2688ECS2687ECS2679ECS2678ECS2677ECS2676ECS2685ECS2684
ECOL585397 ECED1_2210ECED1_2209ECED1_2208ECED1_2217ECED1_2216ECED1_2215ECED1_2207ECED1_2206ECED1_2205ECED1_2204ECED1_2213ECED1_2212
ECOL585057 ECIAI39_1113ECIAI39_1114ECIAI39_1115ECIAI39_1106ECIAI39_1107ECIAI39_1108ECIAI39_1116ECIAI39_1121ECIAI39_1122ECIAI39_1110ECIAI39_1111
ECOL585056 ECUMN_2235ECUMN_2234ECUMN_2233ECUMN_2242ECUMN_2241ECUMN_2240ECUMN_2232ECUMN_2231ECUMN_2230ECUMN_2229ECUMN_2238ECUMN_2237
ECOL585055 EC55989_2163EC55989_2162EC55989_2161EC55989_2170EC55989_2169EC55989_2168EC55989_2160EC55989_2159EC55989_2158EC55989_2157EC55989_2166EC55989_2165
ECOL585035 ECS88_1996ECS88_1995ECS88_1994ECS88_2003ECS88_2002ECS88_2001ECS88_1993ECS88_1992ECS88_1991ECS88_1990ECS88_1999ECS88_1998
ECOL585034 ECIAI1_2024ECIAI1_2023ECIAI1_2022ECIAI1_2031ECIAI1_2030ECIAI1_2029ECIAI1_2021ECIAI1_2020ECIAI1_2019ECIAI1_2018ECIAI1_2027ECIAI1_2026
ECOL481805 ECOLC_1699ECOLC_1700ECOLC_1701ECOLC_1692ECOLC_1693ECOLC_1694ECOLC_1702ECOLC_1703ECOLC_1704ECOLC_1705ECOLC_1696ECOLC_1697
ECOL469008 ECBD_1702ECBD_1703ECBD_1704ECBD_1695ECBD_1696ECBD_1697ECBD_1705ECBD_1706ECBD_1707ECBD_1708ECBD_1699ECBD_1700
ECOL439855 ECSMS35_1241ECSMS35_1242ECSMS35_1243ECSMS35_1234ECSMS35_1235ECSMS35_1236ECSMS35_1244ECSMS35_1245ECSMS35_1246ECSMS35_1247ECSMS35_1238ECSMS35_1239
ECOL409438 ECSE_2174ECSE_2173ECSE_2172ECSE_2181ECSE_2180ECSE_2179ECSE_2171ECSE_2170ECSE_2169ECSE_2168ECSE_2177ECSE_2176
ECOL405955 APECO1_982APECO1_981APECO1_980APECO1_989APECO1_988APECO1_987APECO1_979APECO1_978APECO1_977APECO1_976APECO1_985APECO1_984
ECOL364106 UTI89_C2143UTI89_C2142UTI89_C2141UTI89_C2150UTI89_C2149UTI89_C2148UTI89_C2140UTI89_C2139UTI89_C2138UTI89_C2137UTI89_C2146UTI89_C2145
ECOL362663 ECP_1877ECP_1876ECP_1875ECP_1884ECP_1883ECP_1882ECP_1874ECP_1873ECP_1872ECP_1871ECP_1880ECP_1879
ECOL331111 ECE24377A_2176ECE24377A_2175ECE24377A_2174ECE24377A_2183ECE24377A_2182ECE24377A_2181ECE24377A_2173ECE24377A_2172ECE24377A_2171ECE24377A_2170ECE24377A_2179ECE24377A_2178
ECOL316407 ECK1941:JW1927:B1943ECK1940:JW1926:B1942ECK1939:JW1925:B1941ECK1948:JW1934:B1950ECK1947:JW1933:B1949ECK1946:JW1932:B1948ECK1938:JW1924:B1940ECK1937:JW1923:B1939ECK1936:JW1922:B1938ECK1935:JW1921:B1937ECK1944:JW1930:B1946ECK1943:JW1929:B1945
ECOL199310 C2360C2359C2358C2367C2366C2365C2357C2355C2354C2353C2363C2362
ECAR218491 ECA1721ECA1722ECA1723ECA1714ECA1715ECA1716ECA1724ECA1725ECA1726ECA1727ECA1718ECA1719
DRED349161 DRED_2405DRED_2394DRED_2395DRED_2396DRED_2406DRED_2407DRED_2408DRED_2409DRED_2380DRED_2381
DARO159087 DARO_0768DARO_0769DARO_0770DARO_0761DARO_0762DARO_0763DARO_0771DARO_0772DARO_0773DARO_0776DARO_0765DARO_0766
CVIO243365 CV_3132CV_3133CV_3134CV_3124CV_3125CV_3127CV_2997CV_3135CV_3136CV_3137CV_3129CV_3130
CSAL290398 CSAL_1960CSAL_1959CSAL_1958CSAL_1967CSAL_1966CSAL_1965CSAL_1957CSAL_1956CSAL_1955CSAL_1954CSAL_1963CSAL_1962
CPSY167879 CPS_1506CPS_1505CPS_1514CPS_1513CPS_1512CPS_1504CPS_1503CPS_1502CPS_1501CPS_1510CPS_1509
CJAP155077 CJA_1721CJA_1717CJA_1716CJA_1728CJA_1727CJA_1726CJA_1715CJA_1714CJA_1713CJA_1712CJA_1724CJA_1723
BVIE269482 BCEP1808_3154BCEP1808_3153BCEP1808_3152BCEP1808_0045BCEP1808_0046BCEP1808_0047BCEP1808_3151BCEP1808_3150BCEP1808_3149BCEP1808_3148BCEP1808_0049BCEP1808_0050
BTHA271848 BTH_I0195BTH_I0196BTH_I0197BTH_I0032BTH_I0031BTH_I0030BTH_I0198BTH_I0199BTH_I0200BTH_I0201BTH_I0028BTH_I0027
BSP36773 BCEP18194_A6418BCEP18194_A6417BCEP18194_A6416BCEP18194_A3219BCEP18194_A3220BCEP18194_A3221BCEP18194_A6415BCEP18194_A6414BCEP18194_A6413BCEP18194_A6412BCEP18194_A3223BCEP18194_A3224
BSP107806 BU079BU077BU076BU084BU083BU082BU075BU074BU073BU072BU081BU080
BPSE320373 BURPS668_0217BURPS668_0218BURPS668_0219BURPS668_0034BURPS668_0033BURPS668_0032BURPS668_0220BURPS668_0221BURPS668_0222BURPS668_0223BURPS668_0030BURPS668_0029
BPSE320372 BURPS1710B_A0435BURPS1710B_A0436BURPS1710B_A0437BURPS1710B_A0257BURPS1710B_A0256BURPS1710B_A0255BURPS1710B_A0438BURPS1710B_A0439BURPS1710B_A0440BURPS1710B_A0441BURPS1710B_A0253BURPS1710B_A0252
BPSE272560 BPSL0225BPSL0226BPSL0227BPSL0032BPSL0031BPSL0030BPSL0228BPSL0229BPSL0230BPSL0231BPSL0028BPSL0027
BPET94624 BPET2142BPET2143BPET2144BPET2135BPET2136BPET2137BPET2145BPET2146BPET2147BPET2148BPET2139BPET2140
BPER257313 BP1399BP1400BP1389BP1390BP1391BP1401BP1402BP1403BP1404BP1393BP1394
BMAL320389 BMA10247_3405BMA10247_3404BMA10247_3403BMA10247_2693BMA10247_2692BMA10247_2691BMA10247_3402BMA10247_3401BMA10247_3400BMA10247_3399BMA10247_2686BMA10247_2685
BMAL320388 BMASAVP1_A2942BMASAVP1_A2943BMASAVP1_A3268BMASAVP1_A3267BMASAVP1_A3266BMASAVP1_A2944BMASAVP1_A2945BMASAVP1_A2946BMASAVP1_A2947BMASAVP1_A3496BMASAVP1_A3497
BMAL243160 BMA_3276BMA_3277BMA_3278BMA_2684BMA_2685BMA_2686BMA_3279BMA_3280BMA_3281BMA_3282BMA_2763BMA_2764
BCEN331272 BCEN2424_3069BCEN2424_3068BCEN2424_3067BCEN2424_0035BCEN2424_0036BCEN2424_0037BCEN2424_3066BCEN2424_3065BCEN2424_3064BCEN2424_3063BCEN2424_0039BCEN2424_0040
BCEN331271 BCEN_2455BCEN_2454BCEN_2453BCEN_0035BCEN_0034BCEN_0033BCEN_2452BCEN_2451BCEN_2450BCEN_2449BCEN_0031BCEN_0030
BBRO257310 BB2583BB2584BB2585BB2576BB2577BB2578BB2586BB2587BB2588BB2589BB2580BB2581
BAPH198804 BUSG072BUSG071BUSG070BUSG077BUSG076BUSG075BUSG069BUSG068BUSG067BUSG066BUSG074BUSG073
BAMB398577 BAMMC406_2980BAMMC406_2979BAMMC406_2978BAMMC406_0036BAMMC406_0037BAMMC406_0038BAMMC406_2977BAMMC406_2976BAMMC406_2975BAMMC406_2974BAMMC406_0040BAMMC406_0041
BAMB339670 BAMB_3114BAMB_3113BAMB_3112BAMB_0027BAMB_0028BAMB_0029BAMB_3111BAMB_3110BAMB_3109BAMB_3108BAMB_0031BAMB_0032
ASP62928 AZO2721AZO2720AZO2719AZO2728AZO2727AZO2726AZO2718AZO2717AZO2716AZO2713AZO2724AZO2723
ASAL382245 ASA_1342ASA_1341ASA_1340ASA_1349ASA_0349ASA_1347ASA_1339ASA_1338ASA_0355ASA_1336ASA_1345ASA_1344
AHYD196024 AHA_1370AHA_1369AHA_1368AHA_1377AHA_1376AHA_1375AHA_1367AHA_1366AHA_1365AHA_1364AHA_1373AHA_1372
AEHR187272 MLG_0714MLG_0713MLG_0712MLG_0980MLG_0979MLG_0978MLG_0711MLG_0710MLG_0709MLG_0708MLG_0976MLG_0975
ABAU360910 BAV1711BAV1712BAV1713BAV1704BAV1705BAV1706BAV1714BAV1715BAV1716BAV1717BAV1708BAV1709
AAVE397945 AAVE_4391AAVE_4392AAVE_4383AAVE_4384AAVE_4385AAVE_4394AAVE_4395AAVE_4396AAVE_4387AAVE_4388


Organism features enriched in list (features available for 131 out of the 137 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.0000369792
Disease:Bubonic_plague 0.000117666
Disease:Gastroenteritis 0.00003501013
Disease:Legionnaire's_disease 0.002459344
Endospores:No 3.162e-724211
Endospores:Yes 0.0000972253
GC_Content_Range4:0-40 1.952e-198213
GC_Content_Range4:40-60 4.626e-979224
GC_Content_Range4:60-100 0.003261044145
GC_Content_Range7:0-30 0.0004012247
GC_Content_Range7:30-40 1.404e-146166
GC_Content_Range7:50-60 6.658e-846107
GC_Content_Range7:60-70 0.000564344134
Genome_Size_Range5:0-2 9.317e-182155
Genome_Size_Range5:2-4 2.138e-721197
Genome_Size_Range5:4-6 1.457e-1985184
Genome_Size_Range5:6-10 0.00002032347
Genome_Size_Range9:2-3 2.838e-78120
Genome_Size_Range9:4-5 1.855e-64096
Genome_Size_Range9:5-6 7.161e-114588
Genome_Size_Range9:6-8 8.337e-72238
Gram_Stain:Gram_Neg 2.639e-20118333
Gram_Stain:Gram_Pos 5.165e-172150
Habitat:Multiple 0.008685250178
Motility:No 1.467e-135151
Motility:Yes 3.138e-18103267
Optimal_temp.:- 0.000219075257
Optimal_temp.:37 0.007241115106
Oxygen_Req:Anaerobic 2.129e-84102
Oxygen_Req:Facultative 1.982e-770201
Pathogenic_in:No 0.000202134226
Shape:Coccus 3.928e-9182
Shape:Rod 4.184e-13112347
Shape:Spiral 0.0070792234
Temp._range:Mesophilic 0.0042904116473
Temp._range:Thermophilic 0.0010890135



Back to top


ORGANISMS CONTAINING AT MOST 2 GENES FROM THE GROUP:

Total number of orgs: 307
Effective number of orgs (counting one per cluster within 468 clusters): 241

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
XFAS405440 ncbi Xylella fastidiosa M120
XFAS183190 ncbi Xylella fastidiosa Temecula10
XFAS160492 ncbi Xylella fastidiosa 9a5c0
XAUT78245 ncbi Xanthobacter autotrophicus Py20
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTHE300852 ncbi Thermus thermophilus HB80
TTHE262724 ncbi Thermus thermophilus HB270
TPEN368408 ncbi Thermofilum pendens Hrk 50
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TFUS269800 ncbi Thermobifida fusca YX0
TERY203124 ncbi Trichodesmium erythraeum IMS1010
TELO197221 ncbi Thermosynechococcus elongatus BP-10
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
STRO369723 ncbi Salinispora tropica CNB-4400
STOK273063 ncbi Sulfolobus tokodaii 70
STHE322159 ncbi Streptococcus thermophilus LMD-90
STHE299768 ncbi Streptococcus thermophilus CNRZ10660
STHE264199 ncbi Streptococcus thermophilus LMG 183110
SSUI391296 ncbi Streptococcus suis 98HAH330
SSUI391295 ncbi Streptococcus suis 05ZYH330
SSP84588 ncbi Synechococcus sp. WH 81020
SSP64471 ncbi Synechococcus sp. CC93110
SSP387093 ncbi Sulfurovum sp. NBC37-10
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)0
SSP321327 ncbi Synechococcus sp. JA-3-3Ab0
SSP1148 ncbi Synechocystis sp. PCC 68030
SSP1131 Synechococcus sp. CC96050
SSOL273057 ncbi Sulfolobus solfataricus P20
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153050
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370552 ncbi Streptococcus pyogenes MGAS102700
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103940
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SPNE488221 ncbi Streptococcus pneumoniae 705850
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-60
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-140
SPNE171101 ncbi Streptococcus pneumoniae R60
SPNE170187 ncbi Streptococcus pneumoniae G540
SPNE1313 Streptococcus pneumoniae0
SMUT210007 ncbi Streptococcus mutans UA1590
SMAR399550 ncbi Staphylothermus marinus F10
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14350
SGOR29390 Streptococcus gordonii Challis0
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB0
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23380
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122280
SEPI176279 ncbi Staphylococcus epidermidis RP62A0
SELO269084 ncbi Synechococcus elongatus PCC 63010
SDYS300267 ncbi Shigella dysenteriae Sd1971
SCO ncbi Streptomyces coelicolor A3(2)0
SAVE227882 ncbi Streptomyces avermitilis MA-46800
SAUR93062 ncbi Staphylococcus aureus aureus COL0
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83250
SAUR426430 ncbi Staphylococcus aureus aureus Newman0
SAUR418127 ncbi Staphylococcus aureus aureus Mu30
SAUR367830 Staphylococcus aureus aureus USA3000
SAUR359787 ncbi Staphylococcus aureus aureus JH10
SAUR359786 ncbi Staphylococcus aureus aureus JH90
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4760
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2520
SAUR273036 ncbi Staphylococcus aureus RF1220
SAUR196620 ncbi Staphylococcus aureus aureus MW20
SAUR158879 ncbi Staphylococcus aureus aureus N3150
SAUR158878 ncbi Staphylococcus aureus aureus Mu500
SARE391037 ncbi Salinispora arenicola CNS-2050
SAGA211110 ncbi Streptococcus agalactiae NEM3160
SAGA208435 ncbi Streptococcus agalactiae 2603V/R0
SAGA205921 ncbi Streptococcus agalactiae A9090
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99410
RTYP257363 ncbi Rickettsia typhi Wilmington0
RSP357808 ncbi Roseiflexus sp. RS-10
RSP101510 ncbi Rhodococcus jostii RHA10
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332090
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RMAS416276 ncbi Rickettsia massiliae MTU50
RFEL315456 ncbi Rickettsia felis URRWXCal20
RCON272944 ncbi Rickettsia conorii Malish 70
RCAS383372 ncbi Roseiflexus castenholzii DSM 139410
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RALB246199 Ruminococcus albus 80
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97900
PSP56811 Psychrobacter sp.0
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-10
PSP296591 ncbi Polaromonas sp. JS6660
PRUM264731 ncbi Prevotella ruminicola 230
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257450
PNAP365044 ncbi Polaromonas naphthalenivorans CJ20
PMUL272843 ncbi Pasteurella multocida multocida Pm700
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74547 ncbi Prochlorococcus marinus MIT 93130
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR59920 ncbi Prochlorococcus marinus NATL2A0
PMAR167555 ncbi Prochlorococcus marinus NATL1A0
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13750
PMAR146891 ncbi Prochlorococcus marinus AS96010
PLUT319225 ncbi Chlorobium luteolum DSM 2730
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 170
PHOR70601 ncbi Pyrococcus horikoshii OT30
PGIN242619 ncbi Porphyromonas gingivalis W830
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PDIS435591 ncbi Parabacteroides distasonis ATCC 85030
PCRY335284 ncbi Psychrobacter cryohalolentis K50
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PARC259536 ncbi Psychrobacter arcticus 273-40
PAER178306 ncbi Pyrobaculum aerophilum IM20
PACN267747 ncbi Propionibacterium acnes KPA1712020
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
NSP103690 ncbi Nostoc sp. PCC 71200
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
NMEN374833 ncbi Neisseria meningitidis 0534420
NMEN272831 ncbi Neisseria meningitidis FAM180
NMEN122587 ncbi Neisseria meningitidis Z24910
NMEN122586 ncbi Neisseria meningitidis MC580
NGON242231 ncbi Neisseria gonorrhoeae FA 10900
NFAR247156 ncbi Nocardia farcinica IFM 101520
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124440
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-10
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra0
MTUB336982 ncbi Mycobacterium tuberculosis F110
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MTBRV ncbi Mycobacterium tuberculosis H37Rv0
MTBCDC ncbi Mycobacterium tuberculosis CDC15510
MSYN262723 ncbi Mycoplasma synoviae 530
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E0
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSP189918 ncbi Mycobacterium sp. KMS0
MSP164757 ncbi Mycobacterium sp. JLS0
MSP164756 ncbi Mycobacterium sp. MCS0
MSME246196 ncbi Mycobacterium smegmatis MC2 1550
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK0
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MCAP243233 ncbi Methylococcus capsulatus Bath0
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P20
MBOV233413 ncbi Mycobacterium bovis AF2122/970
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MAVI243243 ncbi Mycobacterium avium 1040
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAER449447 ncbi Microcystis aeruginosa NIES-8430
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
MABS561007 ncbi Mycobacterium abscessus ATCC 199770
LSAK314315 ncbi Lactobacillus sakei sakei 23K0
LREU557436 ncbi Lactobacillus reuteri DSM 200160
LPLA220668 ncbi Lactobacillus plantarum WCFS10
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82930
LLAC272623 ncbi Lactococcus lactis lactis Il14030
LLAC272622 ncbi Lactococcus lactis cremoris SK110
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LCAS321967 ncbi Lactobacillus casei ATCC 3340
LBRE387344 ncbi Lactobacillus brevis ATCC 3670
LACI272621 ncbi Lactobacillus acidophilus NCFM0
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785780
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSOM228400 ncbi Haemophilus somnus 23360
HSOM205914 ncbi Haemophilus somnus 129PT0
HSAL478009 ncbi Halobacterium salinarum R10
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMAR272569 ncbi Haloarcula marismortui ATCC 430490
HINF71421 ncbi Haemophilus influenzae Rd KW200
HINF374930 ncbi Haemophilus influenzae PittEE0
HINF281310 ncbi Haemophilus influenzae 86-028NP0
HDUC233412 ncbi Haemophilus ducreyi 35000HP0
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237790
GVIO251221 ncbi Gloeobacter violaceus PCC 74210
GFOR411154 ncbi Gramella forsetii KT08030
GBET391165 ncbi Granulibacter bethesdensis CGDNIH10
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-000
FTUL418136 ncbi Francisella tularensis tularensis WY96-34180
FTUL401614 ncbi Francisella novicida U1120
FTUL393115 ncbi Francisella tularensis tularensis FSC1980
FTUL393011 ncbi Francisella tularensis holarctica OSU180
FTUL351581 Francisella tularensis holarctica FSC2000
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S850
FSP1855 Frankia sp. EAN1pec0
FSP106370 ncbi Frankia sp. CcI30
FRANT ncbi Francisella tularensis tularensis SCHU S40
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250170
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255860
FMAG334413 ncbi Finegoldia magna ATCC 293280
FJOH376686 ncbi Flavobacterium johnsoniae UW1010
FALN326424 ncbi Frankia alni ACN14a0
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ELIT314225 ncbi Erythrobacter litoralis HTCC25940
EFAE226185 ncbi Enterococcus faecalis V5830
ECOL413997 ncbi Escherichia coli B str. REL6060
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DSP255470 ncbi Dehalococcoides sp. CBDB10
DSP216389 ncbi Dehalococcoides sp. BAV10
DRAD243230 ncbi Deinococcus radiodurans R10
DOLE96561 ncbi Desulfococcus oleovorans Hxd30
DNOD246195 ncbi Dichelobacter nodosus VCS1703A0
DGEO319795 ncbi Deinococcus geothermalis DSM 113000
DETH243164 ncbi Dehalococcoides ethenogenes 1950
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA0
CTEP194439 ncbi Chlorobium tepidum TLS0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)0
CPER289380 ncbi Clostridium perfringens SM1010
CPER195103 ncbi Clostridium perfringens ATCC 131240
CPER195102 ncbi Clostridium perfringens 130
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10620
CMUR243161 ncbi Chlamydia muridarum Nigg2
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3820
CMIC31964 ncbi Clavibacter michiganensis sepedonicus0
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CJEI306537 ncbi Corynebacterium jeikeium K4110
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334060
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3810
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130320
CEFF196164 ncbi Corynebacterium efficiens YS-3140
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131290
CCHL340177 ncbi Chlorobium chlorochromatii CaD30
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1110
CBUR360115 ncbi Coxiella burnetii RSA 3310
CBUR227377 ncbi Coxiella burnetii RSA 4930
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN0
CBLO203907 ncbi Candidatus Blochmannia floridanus0
BXEN266265 ncbi Burkholderia xenovorans LB4001
BTRI382640 ncbi Bartonella tribocorum CIP 1054760
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54820
BQUI283165 ncbi Bartonella quintana Toulouse0
BLON206672 ncbi Bifidobacterium longum NCC27050
BHEN283166 ncbi Bartonella henselae Houston-10
BFRA295405 ncbi Bacteroides fragilis YCH460
BFRA272559 ncbi Bacteroides fragilis NCTC 93430
BCIC186490 Candidatus Baumannia cicadellinicola0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AVAR240292 ncbi Anabaena variabilis ATCC 294130
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP76114 ncbi Aromatoleum aromaticum EbN10
ASP62977 ncbi Acinetobacter sp. ADP10
ASP1667 Arthrobacter sp.0
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL030
APLE416269 ncbi Actinobacillus pleuropneumoniae L200
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K10
ANAE240017 Actinomyces oris MG10
AMAR329726 ncbi Acaryochloris marina MBIC110170
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232700
ABOR393595 ncbi Alcanivorax borkumensis SK20
AAUR290340 ncbi Arthrobacter aurescens TC10


Names of the homologs of the genes in the group in each of these orgs
  G379   G378   G377   EG11977   EG11976   EG11975   EG11656   EG11654   EG11347   EG11346   EG10324   EG10323   
XFAS405440
XFAS183190
XFAS160492
XAUT78245
WPIP955
WPIP80849
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496
TWHI203267
TVOL273116
TTHE300852
TTHE262724
TPEN368408
TKOD69014
TFUS269800
TERY203124
TELO197221
TACI273075
STRO369723
STOK273063
STHE322159
STHE299768
STHE264199
SSUI391296
SSUI391295
SSP84588
SSP64471
SSP387093
SSP321332
SSP321327
SSP1148
SSP1131
SSOL273057
SSAP342451
SPYO370554
SPYO370553
SPYO370552
SPYO370551
SPYO319701
SPYO293653
SPYO286636
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SPNE488221
SPNE487214
SPNE487213
SPNE171101
SPNE170187
SPNE1313
SMUT210007
SMAR399550
SHAE279808
SGOR29390
SFUM335543
SERY405948
SEPI176280
SEPI176279
SELO269084
SDYS300267 SDY_P187
SCO
SAVE227882
SAUR93062
SAUR93061
SAUR426430
SAUR418127
SAUR367830
SAUR359787
SAUR359786
SAUR282459
SAUR282458
SAUR273036
SAUR196620
SAUR158879
SAUR158878
SARE391037
SAGA211110
SAGA208435
SAGA205921
SACI330779
RXYL266117
RTYP257363
RSP357808
RSP101510
RSAL288705
RRIC452659
RRIC392021
RPRO272947
RMAS416276
RFEL315456
RCON272944
RCAS383372
RCAN293613
RBEL391896
RBEL336407
RALB246199
RAKA293614
PTOR263820
PSP56811
PSP312153
PSP296591
PRUM264731
PPEN278197
PNAP365044
PMUL272843
PMAR93060
PMAR74547
PMAR74546
PMAR59920
PMAR167555
PMAR167546
PMAR167542
PMAR167540
PMAR167539
PMAR146891
PLUT319225
PISL384616
PINT246198
PHOR70601
PGIN242619
PFUR186497
PDIS435591
PCRY335284
PAST100379
PARS340102
PARC259536
PAER178306
PACN267747
PABY272844
OTSU357244
NSP103690
NSEN222891
NPHA348780
NMEN374833
NMEN272831
NMEN122587
NMEN122586
NGON242231
NFAR247156
NARO279238
MVAN350058
MTUB419947
MTUB336982
MTHE349307
MTHE187420
MTBRV
MTBCDC
MSYN262723
MSUC221988
MSTA339860
MSP189918
MSP164757
MSP164756
MSME246196
MSED399549
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR368407
MMAR267377
MLEP272631
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGIL350054
MGEN243273
MFLO265311
MCAP340047
MCAP243233
MBUR259564
MBOV410289
MBOV233413
MBAR269797
MAVI243243
MART243272
MAER449447
MAEO419665
MACE188937
MABS561007
LSAK314315
LREU557436
LPLA220668
LMES203120
LLAC272623
LLAC272622
LJOH257314
LHEL405566
LGAS324831
LDEL390333
LDEL321956
LCAS321967
LBRE387344
LACI272621
KPNE272620
IHOS453591
HWAL362976
HSP64091
HSOM228400
HSOM205914
HSAL478009
HMUK485914
HMAR272569
HINF71421
HINF374930
HINF281310
HDUC233412
HBUT415426
HAUR316274
GVIO251221
GFOR411154
GBET391165
FTUL458234
FTUL418136
FTUL401614
FTUL393115
FTUL393011
FTUL351581
FSUC59374
FSP1855
FSP106370
FRANT
FPHI484022
FNUC190304
FMAG334413
FJOH376686
FALN326424
ERUM302409
ERUM254945
ELIT314225
EFAE226185
ECOL413997
ECHA205920
ECAN269484
DSP255470
DSP216389
DRAD243230
DOLE96561
DNOD246195
DGEO319795
DETH243164
CVES412965
CTEP194439
CSUL444179
CRUT413404
CPER289380
CPER195103
CPER195102
CPEL335992
CMUR243161 TC_0040TC_0853
CMIC443906
CMIC31964
CMET456442
CMAQ397948
CKOR374847
CJEI306537
CHUT269798
CHOM360107
CGLU196627
CEFF196164
CDIP257309
CCHL340177
CBUR434922
CBUR360115
CBUR227377
CBLO291272
CBLO203907
BXEN266265 BXE_B0090
BTRI382640
BTHE226186
BQUI283165
BLON206672
BHEN283166
BFRA295405
BFRA272559
BCIC186490
AYEL322098
AVAR240292
AURANTIMONAS
ASP76114
ASP62977
ASP1667
APLE434271
APLE416269
APHA212042
APER272557
ANAE240017
AMAR329726
AMAR234826
ALAI441768
AFUL224325
AFER243159
ABOR393595
AAUR290340


Organism features enriched in list (features available for 288 out of the 307 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Clusters 0.00008961617
Arrangment:Filaments 0.00079861010
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 0.00038751111
Disease:Wide_range_of_infections 0.00038751111
Disease:gastroenteritis 0.0016504113
Endospores:No 3.376e-11142211
Endospores:Yes 1.252e-61053
GC_Content_Range4:0-40 1.282e-7135213
GC_Content_Range4:40-60 0.006683098224
GC_Content_Range4:60-100 0.000249354145
GC_Content_Range7:30-40 7.727e-7108166
GC_Content_Range7:50-60 0.001927240107
GC_Content_Range7:60-70 0.000012045134
Genome_Size_Range5:0-2 2.232e-15118155
Genome_Size_Range5:2-4 0.0001832117197
Genome_Size_Range5:4-6 1.059e-2336184
Genome_Size_Range9:1-2 2.359e-1399128
Genome_Size_Range9:2-3 1.653e-988120
Genome_Size_Range9:3-4 0.00850022977
Genome_Size_Range9:4-5 2.010e-121796
Genome_Size_Range9:5-6 5.041e-91988
Genome_Size_Range9:6-8 0.00438401138
Gram_Stain:Gram_Neg 4.343e-21109333
Gram_Stain:Gram_Pos 1.922e-8103150
Habitat:Host-associated 0.0021261117206
Habitat:Multiple 0.000392470178
Habitat:Terrestrial 0.0011988731
Motility:No 5.433e-33135151
Motility:Yes 2.085e-4252267
Optimal_temp.:- 0.0019292111257
Optimal_temp.:30-35 0.006916177
Optimal_temp.:30-37 0.00239691518
Oxygen_Req:Anaerobic 0.009733360102
Oxygen_Req:Microaerophilic 0.0000677118
Salinity:Non-halophilic 0.003788764106
Shape:Coccus 2.168e-197682
Shape:Irregular_coccus 4.858e-61717
Shape:Rod 1.162e-16123347
Shape:Sphere 0.00022531719
Temp._range:Hyperthermophilic 0.00959231723
Temp._range:Mesophilic 0.0040291222473



Back to top


ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 32
Effective number of orgs (counting one per cluster within 468 clusters): 29

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum) 1.395e-862112
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum) 1.972e-863912
NEUR228410 ncbi Nitrosomonas europaea ATCC 19718 0.0001075130312
NEUT335283 ncbi Nitrosomonas eutropha C91 0.0001136130912
NOCE323261 ncbi Nitrosococcus oceani ATCC 19707 0.0002001137212
TPAL243276 ncbi Treponema pallidum pallidum Nichols 0.00029902497
MFLA265072 ncbi Methylobacillus flagellatus KT 0.0005956150212
TDEN292415 ncbi Thiobacillus denitrificans ATCC 25259 0.0006150150612
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-1 0.0012095159312
TTUR377629 ncbi Teredinibacter turnerae T7901 0.0024643169012
HARS204773 ncbi Herminiimonas arsenicoxydans 0.0025717169612
HACI382638 ncbi Helicobacter acinonychis Sheeba 0.00270365078
CJAP155077 Cellvibrio japonicus 0.0030671172112
TCRU317025 ncbi Thiomicrospira crunogena XCL-2 0.0033125130011
HPYL357544 ncbi Helicobacter pylori HPAG1 0.00333115218
HPY ncbi Helicobacter pylori 26695 0.00333115218
BGAR290434 ncbi Borrelia garinii PBi 0.00336932246
HPYL85963 ncbi Helicobacter pylori J99 0.00358375268
BAFZ390236 ncbi Borrelia afzelii PKo 0.00383312296
BBUR224326 ncbi Borrelia burgdorferi B31 0.00413562326
DARO159087 ncbi Dechloromonas aromatica RCB 0.0045402177812
MPET420662 ncbi Methylibium petroleiphilum PM1 0.0049231179012
BHER314723 ncbi Borrelia hermsii DAH 0.00503932406
BTUR314724 ncbi Borrelia turicatae 91E135 0.00568192456
JSP375286 ncbi Janthinobacterium sp. Marseille 0.0059739181912
NMUL323848 ncbi Nitrosospira multiformis ATCC 25196 0.0062311137911
HHAL349124 ncbi Halorhodospira halophila SL1 0.0062796138011
LCHO395495 ncbi Leptothrix cholodnii SP-6 0.0069947184312
PMOB403833 ncbi Petrotoga mobilis SJ95 0.00766008019
ABAU360910 ncbi Bordetella avium 197N 0.0077617185912
ASP62928 ncbi Azoarcus sp. BH72 0.0088853188012
MAQU351348 ncbi Marinobacter aquaeolei VT8 0.0097151189412


Names of the homologs of the genes in the group in each of these orgs
  G379   G378   G377   EG11977   EG11976   EG11975   EG11656   EG11654   EG11347   EG11346   EG10324   EG10323   
BAPH198804 BUSG072BUSG071BUSG070BUSG077BUSG076BUSG075BUSG069BUSG068BUSG067BUSG066BUSG074BUSG073
BSP107806 BU079BU077BU076BU084BU083BU082BU075BU074BU073BU072BU081BU080
NEUR228410 NE2088NE2087NE2086NE0459NE0460NE0461NE2085NE2084NE2083NE2080NE0463NE0464
NEUT335283 NEUT_0740NEUT_0741NEUT_0742NEUT_2061NEUT_2060NEUT_2059NEUT_0743NEUT_0744NEUT_0745NEUT_0748NEUT_2057NEUT_2056
NOCE323261 NOC_2354NOC_2355NOC_2356NOC_2160NOC_2161NOC_2162NOC_2357NOC_2358NOC_2359NOC_2360NOC_2164NOC_2165
TPAL243276 TP_0402TP_0716TP_0718TP_0400TP_0399TP_0720TP_0721
MFLA265072 MFLA_1973MFLA_1974MFLA_1975MFLA_1966MFLA_1967MFLA_1968MFLA_1976MFLA_1977MFLA_1978MFLA_1979MFLA_1970MFLA_1971
TDEN292415 TBD_1605TBD_1604TBD_1603TBD_1612TBD_1611TBD_1610TBD_1090TBD_1601TBD_1600TBD_1599TBD_1608TBD_1607
AEHR187272 MLG_0714MLG_0713MLG_0712MLG_0980MLG_0979MLG_0978MLG_0711MLG_0710MLG_0709MLG_0708MLG_0976MLG_0975
TTUR377629 TERTU_1348TERTU_1335TERTU_1334TERTU_1355TERTU_1354TERTU_1353TERTU_1333TERTU_1332TERTU_1331TERTU_1330TERTU_1351TERTU_1350
HARS204773 HEAR1881HEAR1880HEAR1879HEAR1889HEAR1888HEAR1887HEAR1878HEAR1877HEAR1876HEAR1874HEAR1885HEAR1884
HACI382638 HAC_0106HAC_0353HAC_0105HAC_0864HAC_0970HAC_0971HAC_1134HAC_1135
CJAP155077 CJA_1721CJA_1717CJA_1716CJA_1728CJA_1727CJA_1726CJA_1715CJA_1714CJA_1713CJA_1712CJA_1724CJA_1723
TCRU317025 TCR_1437TCR_1438TCR_1439TCR_0742TCR_0741TCR_0740TCR_1441TCR_1442TCR_1443TCR_1431TCR_1432
HPYL357544 HPAG1_1346HPAG1_0169HPAG1_1345HPAG1_0668HPAG1_0347HPAG1_0346HPAG1_0417HPAG1_0416
HPY HP1420HP0173HP1419HP0685HP0352HP0351HP1030HP1031
BGAR290434 BG0291BG0278BG0293BG0294BG0280BG0281
HPYL85963 JHP1315JHP0159JHP1314JHP0625JHP0326JHP0325JHP0394JHP0393
BAFZ390236 BAPKO_0298BAPKO_0285BAPKO_0300BAPKO_0301BAPKO_0287BAPKO_0288
BBUR224326 BB_0288BB_0275BB_0290BB_0291BB_0277BB_0278
DARO159087 DARO_0768DARO_0769DARO_0770DARO_0761DARO_0762DARO_0763DARO_0771DARO_0772DARO_0773DARO_0776DARO_0765DARO_0766
MPET420662 MPE_A0570MPE_A0569MPE_A0568MPE_A0577MPE_A0576MPE_A0575MPE_A0567MPE_A0566MPE_A0565MPE_A0564MPE_A0573MPE_A0572
BHER314723 BH0288BH0275BH0290BH0291BH0277BH0278
BTUR314724 BT0288BT0275BT0290BT0291BT0277BT0278
JSP375286 MMA_1436MMA_1437MMA_1438MMA_1429MMA_1430MMA_1431MMA_1439MMA_1440MMA_1441MMA_1442MMA_1433MMA_1434
NMUL323848 NMUL_A1349NMUL_A1348NMUL_A1357NMUL_A1356NMUL_A1355NMUL_A1347NMUL_A1346NMUL_A1345NMUL_A1344NMUL_A1353NMUL_A1352
HHAL349124 HHAL_0494HHAL_0495HHAL_0482HHAL_0483HHAL_0484HHAL_0496HHAL_0497HHAL_0498HHAL_0499HHAL_0486HHAL_0487
LCHO395495 LCHO_1021LCHO_1020LCHO_1019LCHO_1028LCHO_1027LCHO_1026LCHO_1018LCHO_1017LCHO_1016LCHO_1015LCHO_1024LCHO_1023
PMOB403833 PMOB_1953PMOB_1376PMOB_1396PMOB_1394PMOB_1374PMOB_1373PMOB_1686PMOB_0114PMOB_0113
ABAU360910 BAV1711BAV1712BAV1713BAV1704BAV1705BAV1706BAV1714BAV1715BAV1716BAV1717BAV1708BAV1709
ASP62928 AZO2721AZO2720AZO2719AZO2728AZO2727AZO2726AZO2718AZO2717AZO2716AZO2713AZO2724AZO2723
MAQU351348 MAQU_1989MAQU_1993MAQU_1994MAQU_1982MAQU_1983MAQU_1984MAQU_1995MAQU_1996MAQU_1997MAQU_1998MAQU_1986MAQU_1987


Organism features enriched in list (features available for 31 out of the 32 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Disease:Gastric_inflammation_and_peptic_ulcer_disease 0.002740922
Disease:Lyme_disease 0.002740922
Disease:Tick-borne_relapsing_fever 0.002740922
GC_Content_Range7:0-30 0.0064679747
Genome_Size_Range9:0-1 0.0088598527
Motility:No 0.00080191151
Motility:Yes 7.494e-626267
Optimal_temp.:- 0.003795921257
Optimal_temp.:28-32 0.002740922
Shape:Rod 0.00031949347
Shape:Spiral 1.262e-81234



Back to top


ORGANISMS DEPLETED FOR GROUP:

Total number of orgs: 3
Effective number of orgs (counting one per cluster within 468 clusters): 3

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
SDYS300267 ncbi Shigella dysenteriae Sd197 0.000538233911
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 78578 0.000012434000
ECOL413997 ncbi Escherichia coli B str. REL606 2.807e-939450


Organism features enriched in list (features available for 3 out of the 3 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Disease:Pneumonia_and_urinary_tract_infections 0.005145811
GC_Content_Range7:50-60 0.00604103107



Back to top


PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
AST-PWY (arginine degradation II (AST pathway))120980.7037
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181230.6099
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951130.5860
GLYCOCAT-PWY (glycogen degradation I)2461260.5701
PWY-5918 (heme biosynthesis I)2721270.5250
PWY-5755 (4-hydroxybenzoate biosynthesis II (bacteria and fungi))81630.5207
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251120.5044
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3001310.5044
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)176970.5018
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)149880.5018
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2861270.4986
ECASYN-PWY (enterobacterial common antigen biosynthesis)1911000.4875
GALACTITOLCAT-PWY (galactitol degradation)73560.4813
TYRFUMCAT-PWY (tyrosine degradation I)184960.4718
GLUTATHIONESYN-PWY (glutathione biosynthesis)3391350.4704
PWY-1269 (CMP-KDO biosynthesis I)3251320.4696
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2901240.4679
PWY-5148 (acyl-CoA hydrolysis)2271080.4677
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2911240.4661
GLUCARDEG-PWY (D-glucarate degradation I)152850.4654
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2961250.4649
PWY-4041 (γ-glutamyl cycle)2791210.4649
PWY-5386 (methylglyoxal degradation I)3051260.4569
PWY0-981 (taurine degradation IV)106670.4506
GLUCONSUPER-PWY (D-gluconate degradation)2291060.4472
PWY-5913 (TCA cycle variation IV)3011230.4406
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491100.4371
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491100.4371
NAGLIPASYN-PWY (lipid IVA biosynthesis)3481320.4330
PWY-5857 (ubiquinone-10 biosynthesis (prokaryotic))183910.4319
GLUCARGALACTSUPER-PWY (superpathway of D-glucarate and D-galactarate degradation)135750.4262
PWY-6134 (tyrosine biosynthesis IV)89580.4256
PWY0-1182 (trehalose degradation II (trehalase))70500.4247
LIPASYN-PWY (phospholipases)212980.4203
PWY0-1329 (succinate to cytochrome bo oxidase electron transfer)96600.4174
PWY-6196 (serine racemization)102620.4144
4AMINOBUTMETAB-PWY (superpathway of 4-aminobutyrate degradation)212970.4121
PWY-5855 (ubiquinone-7 biosynthesis (prokaryotic))191910.4118
PWY0-541 (cyclopropane fatty acid (CFA) biosynthesis)3001190.4113
GALACTARDEG-PWY (D-galactarate degradation I)151780.4051



Back to top


PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G378   G377   EG11977   EG11976   EG11975   EG11656   EG11654   EG11347   EG11346   EG10324   EG10323   
G3790.9996620.9996430.9993640.9993270.9994190.9995520.9995740.9994970.9995010.9995020.99955
G3780.9997710.9994310.9993770.9994660.9996840.9996770.9996020.9996130.9995420.99957
G3770.9996870.9996090.9997230.9997850.9999180.9998970.9998260.9997750.999711
EG119770.9998760.9999470.9994190.9996450.9996380.9996220.999850.999833
EG119760.9998720.9993310.9995450.9995740.9995320.9997870.999737
EG119750.9994470.9996960.9997160.9996290.9999170.99988
EG116560.9997850.9996840.9996750.9994930.999506
EG116540.999980.9998810.9998220.9997
EG113470.9999060.9997890.999658
EG113460.9996470.999653
EG103240.999959
EG10323



Back to top


PAIRWISE BLAST SCORES:

  G379   G378   G377   EG11977   EG11976   EG11975   EG11656   EG11654   EG11347   EG11346   EG10324   EG10323   
G3790.0f0-----------
G378-0.0f0----------
G377--0.0f0---------
EG11977---0.0f0--------
EG11976----0.0f0-------
EG11975-----0.0f0------
EG11656------0.0f0-----
EG11654-------0.0f0----
EG11347--------0.0f0---
EG11346---------0.0f0--
EG10324----------0.0f0-
EG10323-----------0.0f0



Back to top


PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- FLAGELLAR-MOTOR-COMPLEX (Flagellar Motor Complex) (degree of match pw to cand: 0.385, degree of match cand to pw: 0.417, average score: 0.999)
  Genes in pathway or complex:
   *in cand* 0.9997 0.9995 EG11346 (fliE) EG11346-MONOMER (flagellar basal-body protein FliE)
   *in cand* 0.9997 0.9995 EG11347 (fliF) FLIF-FLAGELLAR-MS-RING (flagellar M-ring protein FliF; basal-body MS(membrane and supramembrane)-ring and collar protein)
             0.9991 0.9987 G365 (flgI) FLGI-FLAGELLAR-P-RING (flagellar P-ring protein FlgI)
             0.9993 0.9987 G363 (flgG) FLGG-FLAGELLAR-MOTOR-ROD-PROTEIN (flagellar basal-body rod protein FlgG)
             0.9991 0.9986 G362 (flgF) FLGF-FLAGELLAR-MOTOR-ROD-PROTEIN (flagellar basal-body rod protein FlgF)
             0.9994 0.9985 G359 (flgC) FLGC-FLAGELLAR-MOTOR-ROD-PROTEIN (flagellar basal-body rod protein FlgC)
             0.9993 0.9983 G358 (flgB) FLGB-FLAGELLAR-MOTOR-ROD-PROTEIN (flagellar basal-body rod protein FlgB)
             0.9947 0.9848 EG10602 (motB) MOTB-FLAGELLAR-MOTOR-STATOR-PROTEIN (MotB protein, enables flagellar motor rotation, linking torque machinery to cell wall)
             0.9974 0.9941 EG10601 (motA) MOTA-FLAGELLAR-MOTOR-STATOR-PROTEIN (MotA protein, proton conductor component of motor; no effect on switching)
             0.9991 0.9987 G364 (flgH) FLGH-FLAGELLAR-L-RING (flagellar L-ring protein FlgH; basal-body outer-membrane L (lipopolysaccharide layer) ring protein)
   *in cand* 0.9998 0.9995 EG11654 (fliG) FLIG-FLAGELLAR-SWITCH-PROTEIN (flagellar motor switch protein FliG)
   *in cand* 0.9997 0.9995 EG10323 (fliM) FLIM-FLAGELLAR-C-RING-SWITCH (flagellar motor switch protein FliM)
   *in cand* 0.9998 0.9995 EG10324 (fliN) FLIN-FLAGELLAR-C-RING-SWITCH (flagellar motor switch protein FliN)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9996 0.9993 EG11656 (fliH) EG11656-MONOMER (flagellar biosynthesis protein FliH)
   *in cand* 0.9997 0.9994 EG11975 (fliP) EG11975-MONOMER (flagellar biosynthesis protein FliP)
   *in cand* 0.9996 0.9993 EG11976 (fliQ) EG11976-MONOMER (flagellar biosynthesis protein FliQ)
   *in cand* 0.9997 0.9994 EG11977 (fliR) EG11977-MONOMER (flagellar biosynthesis protein FliR)
   *in cand* 0.9998 0.9996 G377 (fliI) G377-MONOMER (flagellum-specific ATP synthase FliI)
   *in cand* 0.9996 0.9994 G378 (fliJ) G378-MONOMER (flagellar biosynthesis protein FliJ)
   *in cand* 0.9995 0.9993 G379 (fliK) G379-MONOMER (flagellar hook-length control protein FliK)

- CPLX0-7451 (Flagellar Export Apparatus) (degree of match pw to cand: 0.667, degree of match cand to pw: 0.500, average score: 0.999)
  Genes in pathway or complex:
   *in cand* 0.9996 0.9994 G378 (fliJ) G378-MONOMER (flagellar biosynthesis protein FliJ)
   *in cand* 0.9998 0.9996 G377 (fliI) G377-MONOMER (flagellum-specific ATP synthase FliI)
   *in cand* 0.9996 0.9993 EG11656 (fliH) EG11656-MONOMER (flagellar biosynthesis protein FliH)
   *in cand* 0.9997 0.9994 EG11977 (fliR) EG11977-MONOMER (flagellar biosynthesis protein FliR)
   *in cand* 0.9996 0.9993 EG11976 (fliQ) EG11976-MONOMER (flagellar biosynthesis protein FliQ)
   *in cand* 0.9997 0.9994 EG11975 (fliP) EG11975-MONOMER (flagellar biosynthesis protein FliP)
             0.9974 0.9966 EG11224 (fliO) EG11224-MONOMER (flagellar biosynthesis protein FliO)
             0.9995 0.9989 G7028 (flhB) G7028-MONOMER (flagellar biosynthesis protein FlhB)
             0.9994 0.9988 G370 (flhA) G370-MONOMER (flagellar biosynthesis protein FlhA)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9997 0.9995 EG10323 (fliM) FLIM-FLAGELLAR-C-RING-SWITCH (flagellar motor switch protein FliM)
   *in cand* 0.9998 0.9995 EG10324 (fliN) FLIN-FLAGELLAR-C-RING-SWITCH (flagellar motor switch protein FliN)
   *in cand* 0.9997 0.9995 EG11346 (fliE) EG11346-MONOMER (flagellar basal-body protein FliE)
   *in cand* 0.9997 0.9995 EG11347 (fliF) FLIF-FLAGELLAR-MS-RING (flagellar M-ring protein FliF; basal-body MS(membrane and supramembrane)-ring and collar protein)
   *in cand* 0.9998 0.9995 EG11654 (fliG) FLIG-FLAGELLAR-SWITCH-PROTEIN (flagellar motor switch protein FliG)
   *in cand* 0.9995 0.9993 G379 (fliK) G379-MONOMER (flagellar hook-length control protein FliK)

- CPLX0-7450 (Flagellar Motor Switch Complex) (degree of match pw to cand: 1.000, degree of match cand to pw: 0.250, average score: 1.000)
  Genes in pathway or complex:
   *in cand* 0.9998 0.9995 EG10324 (fliN) FLIN-FLAGELLAR-C-RING-SWITCH (flagellar motor switch protein FliN)
   *in cand* 0.9997 0.9995 EG10323 (fliM) FLIM-FLAGELLAR-C-RING-SWITCH (flagellar motor switch protein FliM)
   *in cand* 0.9998 0.9995 EG11654 (fliG) FLIG-FLAGELLAR-SWITCH-PROTEIN (flagellar motor switch protein FliG)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9997 0.9995 EG11346 (fliE) EG11346-MONOMER (flagellar basal-body protein FliE)
   *in cand* 0.9997 0.9995 EG11347 (fliF) FLIF-FLAGELLAR-MS-RING (flagellar M-ring protein FliF; basal-body MS(membrane and supramembrane)-ring and collar protein)
   *in cand* 0.9996 0.9993 EG11656 (fliH) EG11656-MONOMER (flagellar biosynthesis protein FliH)
   *in cand* 0.9997 0.9994 EG11975 (fliP) EG11975-MONOMER (flagellar biosynthesis protein FliP)
   *in cand* 0.9996 0.9993 EG11976 (fliQ) EG11976-MONOMER (flagellar biosynthesis protein FliQ)
   *in cand* 0.9997 0.9994 EG11977 (fliR) EG11977-MONOMER (flagellar biosynthesis protein FliR)
   *in cand* 0.9998 0.9996 G377 (fliI) G377-MONOMER (flagellum-specific ATP synthase FliI)
   *in cand* 0.9996 0.9994 G378 (fliJ) G378-MONOMER (flagellar biosynthesis protein FliJ)
   *in cand* 0.9995 0.9993 G379 (fliK) G379-MONOMER (flagellar hook-length control protein FliK)

- CPLX0-7452 (Flagellum) (degree of match pw to cand: 0.407, degree of match cand to pw: 0.917, average score: 0.998)
  Genes in pathway or complex:
             0.9992 0.9989 EG10841 (fliD) EG10841-MONOMER (flagellar cap protein FliD; filament capping protein; enables filament assembly)
             0.9993 0.9989 EG10321 (fliC) EG10321-MONOMER (flagellar biosynthesis; flagellin, filament structural protein)
             0.9991 0.9988 EG11545 (flgL) EG11545-MONOMER (flagellar biosynthesis; hook-filament junction protein)
             0.9992 0.9988 EG11967 (flgK) EG11967-MONOMER (flagellar biosynthesis, hook-filament junction protein 1)
             0.9991 0.9982 G361 (flgE) G361-MONOMER (flagellar hook protein FlgE)
             0.9994 0.9988 G370 (flhA) G370-MONOMER (flagellar biosynthesis protein FlhA)
             0.9995 0.9989 G7028 (flhB) G7028-MONOMER (flagellar biosynthesis protein FlhB)
             0.9974 0.9966 EG11224 (fliO) EG11224-MONOMER (flagellar biosynthesis protein FliO)
   *in cand* 0.9997 0.9994 EG11975 (fliP) EG11975-MONOMER (flagellar biosynthesis protein FliP)
   *in cand* 0.9996 0.9993 EG11976 (fliQ) EG11976-MONOMER (flagellar biosynthesis protein FliQ)
   *in cand* 0.9997 0.9994 EG11977 (fliR) EG11977-MONOMER (flagellar biosynthesis protein FliR)
   *in cand* 0.9996 0.9993 EG11656 (fliH) EG11656-MONOMER (flagellar biosynthesis protein FliH)
   *in cand* 0.9998 0.9996 G377 (fliI) G377-MONOMER (flagellum-specific ATP synthase FliI)
   *in cand* 0.9996 0.9994 G378 (fliJ) G378-MONOMER (flagellar biosynthesis protein FliJ)
   *in cand* 0.9998 0.9995 EG10324 (fliN) FLIN-FLAGELLAR-C-RING-SWITCH (flagellar motor switch protein FliN)
   *in cand* 0.9997 0.9995 EG10323 (fliM) FLIM-FLAGELLAR-C-RING-SWITCH (flagellar motor switch protein FliM)
   *in cand* 0.9998 0.9995 EG11654 (fliG) FLIG-FLAGELLAR-SWITCH-PROTEIN (flagellar motor switch protein FliG)
             0.9991 0.9987 G364 (flgH) FLGH-FLAGELLAR-L-RING (flagellar L-ring protein FlgH; basal-body outer-membrane L (lipopolysaccharide layer) ring protein)
             0.9974 0.9941 EG10601 (motA) MOTA-FLAGELLAR-MOTOR-STATOR-PROTEIN (MotA protein, proton conductor component of motor; no effect on switching)
             0.9947 0.9848 EG10602 (motB) MOTB-FLAGELLAR-MOTOR-STATOR-PROTEIN (MotB protein, enables flagellar motor rotation, linking torque machinery to cell wall)
             0.9993 0.9983 G358 (flgB) FLGB-FLAGELLAR-MOTOR-ROD-PROTEIN (flagellar basal-body rod protein FlgB)
             0.9994 0.9985 G359 (flgC) FLGC-FLAGELLAR-MOTOR-ROD-PROTEIN (flagellar basal-body rod protein FlgC)
             0.9991 0.9986 G362 (flgF) FLGF-FLAGELLAR-MOTOR-ROD-PROTEIN (flagellar basal-body rod protein FlgF)
             0.9993 0.9987 G363 (flgG) FLGG-FLAGELLAR-MOTOR-ROD-PROTEIN (flagellar basal-body rod protein FlgG)
             0.9991 0.9987 G365 (flgI) FLGI-FLAGELLAR-P-RING (flagellar P-ring protein FlgI)
   *in cand* 0.9997 0.9995 EG11347 (fliF) FLIF-FLAGELLAR-MS-RING (flagellar M-ring protein FliF; basal-body MS(membrane and supramembrane)-ring and collar protein)
   *in cand* 0.9997 0.9995 EG11346 (fliE) EG11346-MONOMER (flagellar basal-body protein FliE)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9995 0.9993 G379 (fliK) G379-MONOMER (flagellar hook-length control protein FliK)



Back to top


GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10323 EG10324 EG11346 EG11347 EG11654 EG11656 EG11975 EG11976 EG11977 G377 G378 G379 (centered at G379)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G379   G378   G377   EG11977   EG11976   EG11975   EG11656   EG11654   EG11347   EG11346   EG10324   EG10323   
119/623126/623292/623291/623194/623311/623133/623295/623299/623204/623303/623270/623
AAEO224324:0:Tyes--659922923893-0361-623-
AAVE397945:0:Tyes-89012-11121345
ABAC204669:0:Tyes--145-7-16171801
ABAU360910:0:Tyes7890121011121345
ABUT367737:0:Tyes--17341737-791-17561757-17470
ACAU438753:0:Tyes--19----130-1416
ACEL351607:0:Tyes--3181716-10-1413
ACRY349163:8:Tyes---1162-1167-496497-4950
ADEH290397:0:Tyes--310-2-33343545
AEHR187272:0:Tyes6542712702693210267266
AHYD196024:0:Tyes654131211321098
AMET293826:0:Tyes--2068205120522053-10-20562057
AORE350688:0:Tyes--4201918-21015-
ASAL382245:5:Tyes96095995896709659579566954963962
ASP232721:2:Tyes--9012-11121345
ASP62928:0:Tyes87615141354301110
BABO262698:0:Tno-----32--901-0-
BAFZ390236:2:Fyes--13--0-1516-23
BAMB339670:3:Tno316531643163012316231613160315956
BAMB398577:3:Tno298529842983012298229812980297945
BAMY326423:0:Tyes--4181716-2101312
BANT260799:0:Tno---31-29-10-27-
BANT261594:2:Tno---27-25-0--23-
BANT568206:2:Tyes---0-2-3537-4-
BANT592021:2:Tno---38-36-20-34-
BAPH198804:0:Tyes65411109321087
BAPH372461:0:Tyes--3-65-10-4-
BBAC264462:0:Tyes--68012-70717245
BBAC360095:0:Tyes--15--5-220-21-
BBRO257310:0:Tyes7890121011121345
BBUR224326:21:Fno--13--0-1516-23
BCAN483179:0:Tno---982-33--997-0-
BCEN331271:2:Tno245024492448543244724462445244410
BCEN331272:3:Tyes302830273026012302530243023302245
BCER226900:1:Tyes---22-20-10-1817
BCER288681:0:Tno---21-19-10-1716
BCER315749:1:Tyes---24-22-10-2019
BCER405917:1:Tyes---21-19-10-1716
BCER572264:1:Tno---21-19-10-1716
BCLA66692:0:Tyes--14012-16171856
BGAR290434:2:Fyes--13--0-1516-23
BHAL272558:0:Tyes--15012-17181956
BHER314723:0:Fyes--13--0-1516-23
BJAP224911:0:Fyes--03633-3639-48274826-48293648
BLIC279010:0:Tyes--4181716-2101312
BMAL243160:1:Tno5425435440125455465475487677
BMAL320388:1:Tno-013163153142345538539
BMAL320389:1:Tyes70970870787670670570470310
BMEL224914:0:Tno-----947--0-979-
BMEL359391:0:Tno-----31--885-0-
BOVI236:0:Tyes---782-27--797-0-
BPAR257311:0:Tno567-0189-10-3
BPER257313:0:Tyes-890121011121345
BPET94624:0:Tyes7890121011121345
BPSE272560:1:Tyes20120220354320420520620710
BPSE320372:1:Tno18118218354318418518618710
BPSE320373:1:Tno18018118254318318418518610
BPUM315750:0:Tyes--4181716-2101312
BSP107806:2:Tyes754121110321098
BSP36773:2:Tyes325532543253012325232513250324945
BSP376:0:Tyes--03347-3353-41914190-41933357
BSUB:0:Tyes--4181716-2101312
BSUI204722:0:Tyes---959-36--973-0-
BSUI470137:0:Tno--6--33----0-
BTHA271848:1:Tno16616716854316917017117210
BTHU281309:1:Tno---21-19-10-1716
BTHU412694:1:Tno---18-17-10-1615
BTUR314724:0:Fyes--13--0-1516-23
BVIE269482:7:Tyes307730763075012307430733072307145
BWEI315730:4:Tyes---26-24-10-2221
BXEN266265:1:Tyes---------0--
CABO218497:0:Tyes--0--861----3-
CACE272562:1:Tyes--110-2-1314156667
CAULO:0:Tyes--2173177-48-10-3-
CBEI290402:0:Tyes--110-2-1314154849
CBOT36826:1:Tno--13012-1516179798
CBOT441770:0:Tyes--12012-1415169495
CBOT441771:0:Tno--12012-1415169697
CBOT441772:1:Tno--13012-15-167576
CBOT498213:1:Tno--13012-1516178687
CBOT508765:1:Tyes--3953-51-3736-10
CBOT515621:2:Tyes--13012-1516179293
CBOT536232:0:Tno--13012-1516179697
CCAV227941:1:Tyes--0--896----3-
CCON360104:2:Tyes--015001721652-507506-13211322
CCUR360105:0:Tyes--02441676752-15211522-14101411
CDES477974:0:Tyes--2513-1626272829180
CDIF272563:1:Tyes--416-14-2102524
CFEL264202:1:Tyes--928--0----925-
CFET360106:0:Tyes--145112030531-6263-12751274
CHYD246194:0:Tyes--4151413-2102827
CJAP155077:0:Tyes95416151432101211
CJEJ192222:0:Tyes--13210811571726-236235-01
CJEJ195099:0:Tno--13112191736828-302301-01
CJEJ354242:2:Tyes--12910591519713-242241-01
CJEJ360109:0:Tyes--12544618511054-14691470-01
CJEJ407148:0:Tno--13211011566734-244243-01
CKLU431943:1:Tyes--414-12-210965966
CMUR243161:1:Tyes--0802--------
CNOV386415:0:Tyes--3750-48-35343310
CPHY357809:0:Tyes--170-2-19-2156
CPNE115711:1:Tyes--0996-994------
CPNE115713:0:Tno--0119-121------
CPNE138677:0:Tno--0121-123------
CPNE182082:0:Tno--0122-124------
CPRO264201:0:Fyes--12260-2----1229-
CPSY167879:0:Tyes-54131211321098
CSAL290398:0:Tyes654131211321098
CSP501479:7:Fyes--120-73--70-72-
CSP501479:8:Fyes-------0----
CSP78:2:Tyes--11376-357-10-3427
CTET212717:0:Tyes--110-1-1314-6162
CTRA471472:0:Tyes--0807-805--802---
CTRA471473:0:Tno--0807-805--802---
CVIO243365:0:Tyes1401411421321331350143144145137138
DARO159087:0:Tyes7890121011121545
DDES207559:0:Tyes--02832873288-23432902397
DHAF138119:0:Tyes--10012-1213-56
DPSY177439:2:Tyes--4181716-2101413
DRED349161:0:Tyes--251415162627282901
DSHI398580:5:Tyes--14101421-1431-01428-1430-
DVUL882:1:Tyes--266317501-268269-3863
ECAR218491:0:Tyes7890121011121345
ECOL199310:0:Tno7651413124210109
ECOL316407:0:Tno654131211321098
ECOL331111:6:Tno654131211321098
ECOL362663:0:Tno654131211321098
ECOL364106:1:Tno654131211321098
ECOL405955:2:Tyes654131211321098
ECOL409438:6:Tyes654131211321098
ECOL439855:4:Tno7890121011121345
ECOL469008:0:Tno7890121011121345
ECOL481805:0:Tno7890121011121345
ECOL585034:0:Tno654131211321098
ECOL585035:0:Tno654131211321098
ECOL585055:0:Tno654131211321098
ECOL585056:2:Tno654131211321098
ECOL585057:0:Tno78901210-131445
ECOL585397:0:Tno654131211321098
ECOL83334:0:Tno654131211321098
ECOLI:0:Tno654131211321098
ECOO157:0:Tno654131211321098
EFER585054:1:Tyes7651413124320109
ESP42895:1:Tyes654131211321098
FNOD381764:0:Tyes--68282-0-1451461044863864
GKAU235909:1:Tyes--4181716-2101312
GMET269799:1:Tyes--14012-16171845
GOXY290633:5:Tyes--12621092-1099-23-0273
GSUL243231:0:Tyes--416-14-2101312
GTHE420246:1:Tyes--4181716-2101312
GURA351605:0:Tyes--13012-15161745
HACI382638:1:Tyes--12380701-797798-952953
HARS204773:0:Tyes7651413124320109
HCHE349521:0:Tyes108810941095108110821083109610971098010851086
HHAL349124:0:Tyes-12130121415161745
HHEP235279:0:Tyes--1292710259-177178-729728
HMOD498761:0:Tyes--4212019-2101613
HNEP81032:0:Tyes-----3-11370-1139-
HPY:0:Tno--126301262518-181180-865866
HPYL357544:1:Tyes--120501204504-181180-252251
HPYL85963:0:Tno--114401143460-163162-231230
ILOI283942:0:Tyes789012-11121345
JSP290400:1:Tyes--1557--1536-01538---
JSP375286:0:Tyes7890121011121345
KRAD266940:2:Fyes--150-2-1718-45
LBIF355278:2:Tyes--2051734-1736-25550-1738835
LBIF456481:2:Tno--2101787-1789-26460-1791860
LBOR355276:1:Tyes--9891656-1658-0992-16601215
LBOR355277:1:Tno--9181427-1429-0915-14311693
LCHO395495:0:Tyes654131211321098
LINN272626:1:Tno---2-0-3837-2423
LINT189518:1:Tyes--25902607-2609-02589-26112073
LINT267671:1:Tno--13491333-1331-01350-13291786
LINT363253:3:Tyes--824502-609-826827-6110
LMON169963:0:Tno---2-0-3837-2423
LMON265669:0:Tyes---2-0-3837-2423
LPNE272624:0:Tno0-689899100-707172102103
LPNE297245:1:Fno0-70100101102-727374104105
LPNE297246:1:Fyes0-65959697-67686999100
LPNE400673:0:Tno0-76106107108-787980110111
LSPH444177:1:Tyes--4191817-2101413
LWEL386043:0:Tyes---2-0-3837-2423
LXYL281090:0:Tyes--3----10---
MAQU351348:2:Tyes711120121314151645
MEXT419610:0:Tyes--3942191-0-36703671-2112638
MFLA265072:0:Tyes7890121011121345
MLOT266835:2:Tyes--2759--17-020-1-
MMAG342108:0:Tyes--128118-110-23-02998
MMAR394221:0:Tyes--01260-1269-15161265131273
MPET420662:1:Tyes654131211321098
MSP266779:3:Tyes--0--183-200180-199-
MSP400668:0:Tyes712130121415161745
MSP409:2:Tyes--7031882-1888-18571858-0941
MTHE264732:0:Tyes--418171632101434
MXAN246197:0:Tyes--07-5----3-
NEUR228410:0:Tyes165016491648012164716461645164245
NEUT335283:2:Tyes012129712961295345812931292
NHAM323097:2:Tyes--2563647-641-23-0637
NMUL323848:3:Tyes-54131211321098
NOCE323261:1:Tyes20120220301220420520620745
NSP35761:1:Tyes--150-2-1718-45
NSP387092:0:Tyes--20282726-018-21
NWIN323098:0:Tyes--0613-607-7576-73601
OANT439375:4:Tyes--290-18-3615-35-
OCAR504832:0:Tyes--1895188-182-20-4178
OIHE221109:0:Tyes--4191817-2101413
PAER208963:0:Tyes-36036101236236336436545
PAER208964:0:Tno-543483473463210344343
PATL342610:0:Tyes7-90121011121345
PCAR338963:0:Tyes21-24012-26272845
PENT384676:0:Tyes-11120121314151645
PFLU205922:0:Tyes-5416151432101211
PFLU216595:1:Tyes711120121314151645
PFLU220664:0:Tyes95416151432101211
PHAL326442:1:Tyes65413-11321098
PING357804:0:Tyes--0333231123430-
PLUM243265:0:Fyes7890121011121345
PMEN399739:0:Tyes711120121314151645
PMOB403833:0:Tyes-183212541274-1272-12521251156210
PPRO298386:2:Tyes91391291191909179109097907916915
PPUT160488:0:Tno812130121415161745
PPUT351746:0:Tyes95416151432101211
PPUT76869:0:Tno711120121314151645
PSP117:0:Tyes--62482-0-24613474-44613421
PSTU379731:0:Tyes711120121314151645
PSYR205918:0:Tyes-1112012-14151645
PSYR223283:2:Tyes-5417161532101312
PTHE370438:0:Tyes--2514-162728293001
RDEN375451:4:Tyes--950-108-2254111---
RETL347834:5:Tyes--10--21-50-6-
REUT264198:2:Tyes6547817827833210785786
REUT381666:1:Tyes179717961795012179417931792179145
RFER338969:1:Tyes-54131211321098
RLEG216596:6:Tyes--10--21-50-6-
RMET266264:1:Tyes76544434243204039
RPAL258594:0:Tyes--3672635-2641-10-32648
RPAL316055:0:Tyes--3273584-578-10-3569
RPAL316056:0:Tyes--3287577-571-101503565
RPAL316057:0:Tyes--200811-5-21812182-21790
RPAL316058:0:Tyes--26512512-2518-10-32523
RPOM246200:1:Tyes--120-25-209128-26-
RRUB269796:1:Tyes--02289-2297-1819-162307
RSOL267608:0:Tyes2221200121918171645
RSPH272943:4:Tyes--413-11-21098
RSPH349101:2:Tno--413-11-21098
RSPH349102:5:Tyes--413-11-21098
SACI56780:0:Tyes--4371370369-210367366
SALA317655:1:Tyes--90-2-11121345
SBAL399599:3:Tyes7890121011121345
SBAL402882:1:Tno7890121011121345
SBOY300268:1:Tyes-6-01---8934
SDEG203122:0:Tyes7-150121617181945
SDEN318161:0:Tyes129912981297130836911306129612953685013041301
SDYS300267:0:Tyes--0---------
SENT209261:0:Tno7890121011121345
SENT220341:0:Tno654131211321098
SENT295319:0:Tno7890121011121345
SENT321314:2:Tno7651413124320109
SENT454169:2:Tno7651413124320109
SFLE198214:0:Tyes54312111021-087
SFLE373384:0:Tno4-31110921-076
SGLO343509:3:Tyes678207202070910111220682067
SHAL458817:0:Tyes29095413287711322884098
SHIGELLA:0:Tno4-3109-21-076
SLAC55218:1:Fyes--120-399-1579396-398-
SLOI323850:0:Tyes65413-11321098
SMED366394:3:Tyes--11--22-50-6-
SMEL266834:2:Tyes--11--22-50-6-
SONE211586:1:Tyes7890121011121345
SPEA398579:0:Tno133313321331134071338133013290132713361335
SPRO399741:1:Tyes654131211321098
SRUB309807:1:Tyes--280-2-3031-45
SSED425104:0:Tyes309430953096308773089309730980310030913092
SSON300269:1:Tyes654131211321098
SSP292414:2:Tyes--1989--1967-01970---
SSP644076:5:Fyes-------0----
SSP644076:6:Fyes--2210-0--3---
SSP94122:1:Tyes-54131211321098
STHE292459:0:Tyes--11012-131415420
STYP99287:1:Tyes654131211321098
SWOL335541:0:Tyes--3181716--101312
TCRU317025:0:Tyes713714715210-717718719707708
TDEN243275:0:Tyes--11550-2689-11531152-26912692
TDEN292415:0:Tyes5195185175265255240515514513522521
TDEN326298:0:Tyes--163513471554556-10-240239
TLET416591:0:Tyes--1847549-551-18451844017701769
TMAR243274:0:Tyes--0678-467-231120-449
TPAL243276:0:Tyes--3312-314-10-316317
TPET390874:0:Tno--6970-220-6956941430239240
TPSE340099:0:Tyes--15012-17181956
TROS309801:0:Tyes--6208-6-62262362401
TSP1755:0:Tyes--15012-17181956
TSP28240:0:Tyes--7190-215-7187171473233234
TTEN273068:0:Tyes--15012-17181956
TTUR377629:0:Tyes185425242332102120
VCHO:0:Tyes-890121011121345
VCHO345073:1:Tno-10110121213141556
VEIS391735:1:Tyes--41211-321098
VFIS312309:2:Tyes7890121011121345
VPAR223926:0:Tyes--------0---
VPAR223926:1:Tyes7890121011-1345
VVUL196600:2:Tyes-890121011121345
VVUL216895:1:Tno-54131211321098
WSUC273121:0:Tyes--1844011891738-16471648-13151316
XAXO190486:0:Tyes8-10013-12131456
XCAM190485:0:Tyes--90-21011121345
XCAM314565:0:Tno--413-11-21098
XCAM316273:0:Tno8-100-21112131445
XCAM487884:0:Tno--100-31112131456
XORY291331:0:Tno6-4131211-21098
XORY342109:0:Tyes6-4131211-21098
XORY360094:0:Tno12-8282622-4201816
YENT393305:1:Tyes654131211321098
YPES187410:5:Tno654131211321098
YPES214092:3:Tno7890121011121345
YPES349746:2:Tno-1710171132117121713171417150-
YPES360102:3:Tyes7890121011121345
YPES377628:2:Tno654131211321098
YPES386656:2:Tno654131211321098
YPSE273123:2:Tno7890121011121345
YPSE349747:2:Tno65415141332101110
ZMOB264203:0:Tyes---17-15-3101211



Back to top