CANDIDATE ID: 48

CANDIDATE ID: 48

NUMBER OF GENES: 10
AVERAGE SCORE:    9.9956978e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    2.0000000e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- EG12520 (ytfT) (b4230)
   Products of gene:
     - YTFT-MONOMER (YtfT)
     - ABC-46-CPLX (galactose ABC transporter)
       Reactions:
        ATP + beta-D-galactose[periplasmic space] + H2O  ->  ADP + phosphate + beta-D-galactose[cytosol]

- EG12518 (ytfR) (b4228 (obsolete))
   Products of gene:
     - YTFR-MONOMER (YtfR)
     - ABC-46-CPLX (galactose ABC transporter)
       Reactions:
        ATP + beta-D-galactose[periplasmic space] + H2O  ->  ADP + phosphate + beta-D-galactose[cytosol]

- EG12439 (yjfF) (b4231)
   Products of gene:
     - YJFF-MONOMER (YjfF)
     - ABC-46-CPLX (galactose ABC transporter)
       Reactions:
        ATP + beta-D-galactose[periplasmic space] + H2O  ->  ADP + phosphate + beta-D-galactose[cytosol]

- EG11959 (alsA) (b4087)
   Products of gene:
     - YJCW-MONOMER (AlsA)
     - ABC-42-CPLX (D-allose ABC transporter)
       Reactions:
        D-allose[periplasmic space] + ATP + H2O  ->  D-allose[cytosol] + ADP + phosphate

- EG11958 (alsC) (b4086)
   Products of gene:
     - YJCV-MONOMER (AlsC)
     - ABC-42-CPLX (D-allose ABC transporter)
       Reactions:
        D-allose[periplasmic space] + ATP + H2O  ->  D-allose[cytosol] + ADP + phosphate

- EG10816 (rbsC) (b3750)
   Products of gene:
     - RBSC-MONOMER (RbsC)
     - ABC-28-CPLX (ribose ABC transporter)
       Reactions:
        ATP + beta-D-ribopyranose[periplasmic space] + H2O  ->  ADP + phosphate + beta-D-ribopyranose[cytosol]

- EG10815 (rbsB) (b3751)
   Products of gene:
     - RBSB-MONOMER (RbsB)
     - ABC-28-CPLX (ribose ABC transporter)
       Reactions:
        ATP + beta-D-ribopyranose[periplasmic space] + H2O  ->  ADP + phosphate + beta-D-ribopyranose[cytosol]

- EG10814 (rbsA) (b3749)
   Products of gene:
     - RBSA-MONOMER (RbsA)
     - ABC-28-CPLX (ribose ABC transporter)
       Reactions:
        ATP + beta-D-ribopyranose[periplasmic space] + H2O  ->  ADP + phosphate + beta-D-ribopyranose[cytosol]

- EG10059 (araH) (b1898 (obsolete))
   Products of gene:
     - ARAH-MONOMER (high-affinity L-arabinose transport protein (ABC superfamily, membrane))
     - ABC-2-CPLX (arabinose ABC transporter)
       Reactions:
        alpha-L-arabinopyranose[periplasmic space] + ATP + H2O  ->  alpha-L-arabinopyranose[cytosol] + phosphate + ADP

- EG10058 (araG) (b1900)
   Products of gene:
     - ARAG-MONOMER (AraG)
     - ABC-2-CPLX (arabinose ABC transporter)
       Reactions:
        alpha-L-arabinopyranose[periplasmic space] + ATP + H2O  ->  alpha-L-arabinopyranose[cytosol] + phosphate + ADP



Back to top


ORGANISMS CONTAINING AT LEAST 9 GENES FROM THE GROUP:

Total number of orgs: 154
Effective number of orgs (counting one per cluster within 468 clusters): 96

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 3175810
YPSE273123 ncbi Yersinia pseudotuberculosis IP 3295310
YPES386656 ncbi Yersinia pestis Pestoides F10
YPES377628 ncbi Yersinia pestis Nepal51610
YPES360102 ncbi Yersinia pestis Antiqua10
YPES349746 ncbi Yersinia pestis Angola10
YPES214092 ncbi Yersinia pestis CO9210
YPES187410 ncbi Yersinia pestis KIM 1010
YENT393305 ncbi Yersinia enterocolitica enterocolitica 808110
VVUL216895 ncbi Vibrio vulnificus CMCP610
VVUL196600 ncbi Vibrio vulnificus YJ01610
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 221063310
VFIS312309 ncbi Vibrio fischeri ES11410
VEIS391735 ncbi Verminephrobacter eiseniae EF01-210
VCHO345073 ncbi Vibrio cholerae O39510
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N1696110
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB410
TSP1755 Thermoanaerobacter sp.10
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332239
TMAR243274 ncbi Thermotoga maritima MSB810
TLET416591 ncbi Thermotoga lettingae TMO9
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT210
SSON300269 ncbi Shigella sonnei Ss04610
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153059
SPRO399741 ncbi Serratia proteamaculans 56810
SPEA398579 ncbi Shewanella pealeana ATCC 70034510
SMEL266834 ncbi Sinorhizobium meliloti 102110
SMED366394 ncbi Sinorhizobium medicae WSM41910
SHIGELLA ncbi Shigella flexneri 2a str. 2457T9
SHAL458817 ncbi Shewanella halifaxensis HAW-EB49
SGLO343509 ncbi Sodalis glossinidius morsitans9
SFLE373384 ncbi Shigella flexneri 5 str. 84019
SFLE198214 ncbi Shigella flexneri 2a str. 3019
SERY405948 ncbi Saccharopolyspora erythraea NRRL 233810
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL47610
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B6710
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT1810
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty210
SDYS300267 ncbi Shigella dysenteriae Sd19710
SCO ncbi Streptomyces coelicolor A3(2)9
SBOY300268 ncbi Shigella boydii Sb22710
SAVE227882 ncbi Streptomyces avermitilis MA-468010
SAGA211110 ncbi Streptococcus agalactiae NEM31610
SAGA208435 ncbi Streptococcus agalactiae 2603V/R9
SAGA205921 ncbi Streptococcus agalactiae A90910
RXYL266117 ncbi Rubrobacter xylanophilus DSM 994110
RSP101510 ncbi Rhodococcus jostii RHA110
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 384110
RFER338969 ncbi Rhodoferax ferrireducens T11810
REUT381666 ncbi Ralstonia eutropha H169
REUT264198 ncbi Ralstonia eutropha JMP13410
RETL347834 ncbi Rhizobium etli CFN 4210
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC300010
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a10
PPRO298386 ncbi Photobacterium profundum SS910
PMUL272843 ncbi Pasteurella multocida multocida Pm7010
PMOB403833 ncbi Petrotoga mobilis SJ959
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO110
PING357804 ncbi Psychromonas ingrahamii 3710
PFLU216595 ncbi Pseudomonas fluorescens SBW2510
OIHE221109 ncbi Oceanobacillus iheyensis HTE83110
OANT439375 ncbi Ochrobactrum anthropi ATCC 4918810
MTHE264732 ncbi Moorella thermoacetica ATCC 3907310
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E10
MSP400668 ncbi Marinomonas sp. MWYL19
MLOT266835 ncbi Mesorhizobium loti MAFF30309910
LLAC272623 ncbi Lactococcus lactis lactis Il14039
LCAS321967 ncbi Lactobacillus casei ATCC 3349
LACI272621 ncbi Lactobacillus acidophilus NCFM10
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 7857810
HSOM228400 ncbi Haemophilus somnus 233610
HINF71421 ncbi Haemophilus influenzae Rd KW2010
HINF374930 ncbi Haemophilus influenzae PittEE10
HINF281310 ncbi Haemophilus influenzae 86-028NP10
HCHE349521 ncbi Hahella chejuensis KCTC 239610
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-210
GKAU235909 ncbi Geobacillus kaustophilus HTA42610
ESP42895 Enterobacter sp.10
EFER585054 ncbi Escherichia fergusonii ATCC 3546910
ECOO157 ncbi Escherichia coli O157:H7 EDL93310
ECOL83334 Escherichia coli O157:H710
ECOL585397 ncbi Escherichia coli ED1a10
ECOL585057 ncbi Escherichia coli IAI3910
ECOL585056 ncbi Escherichia coli UMN02610
ECOL585055 ncbi Escherichia coli 5598910
ECOL585035 ncbi Escherichia coli S8810
ECOL585034 ncbi Escherichia coli IAI110
ECOL481805 ncbi Escherichia coli ATCC 873910
ECOL469008 ncbi Escherichia coli BL21(DE3)10
ECOL439855 ncbi Escherichia coli SMS-3-510
ECOL413997 ncbi Escherichia coli B str. REL60610
ECOL409438 ncbi Escherichia coli SE1110
ECOL405955 ncbi Escherichia coli APEC O110
ECOL364106 ncbi Escherichia coli UTI8910
ECOL362663 ncbi Escherichia coli 53610
ECOL331111 ncbi Escherichia coli E24377A10
ECOL316407 ncbi Escherichia coli K-12 substr. W311010
ECOL199310 ncbi Escherichia coli CFT07310
ECAR218491 ncbi Pectobacterium atrosepticum SCRI104310
CVIO243365 ncbi Chromobacterium violaceum ATCC 1247210
CTET212717 ncbi Clostridium tetani E8810
CPER195103 ncbi Clostridium perfringens ATCC 131249
CPER195102 ncbi Clostridium perfringens 1310
CNOV386415 ncbi Clostridium novyi NT10
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130329
CDIF272563 ncbi Clostridium difficile 63010
CBOT515621 ncbi Clostridium botulinum Ba4 str. 65710
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B10
BXEN266265 ncbi Burkholderia xenovorans LB40010
BWEI315730 ncbi Bacillus weihenstephanensis KBAB410
BVIE269482 ncbi Burkholderia vietnamiensis G410
BTHU412694 ncbi Bacillus thuringiensis Al Hakam10
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-2710
BTHA271848 ncbi Burkholderia thailandensis E26410
BSUI470137 ncbi Brucella suis ATCC 234459
BSUI204722 ncbi Brucella suis 133010
BSUB ncbi Bacillus subtilis subtilis 16810
BSP376 Bradyrhizobium sp.10
BSP36773 Burkholderia sp.10
BPUM315750 ncbi Bacillus pumilus SAFR-03210
BPSE320373 ncbi Burkholderia pseudomallei 66810
BPSE320372 ncbi Burkholderia pseudomallei 1710b10
BPSE272560 ncbi Burkholderia pseudomallei K9624310
BMEL359391 ncbi Brucella melitensis biovar Abortus 230810
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M10
BMAL320389 ncbi Burkholderia mallei NCTC 102479
BMAL320388 ncbi Burkholderia mallei SAVP19
BMAL243160 ncbi Burkholderia mallei ATCC 233449
BLIC279010 ncbi Bacillus licheniformis ATCC 1458010
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1109
BHAL272558 ncbi Bacillus halodurans C-12510
BCLA66692 ncbi Bacillus clausii KSM-K1610
BCER572264 ncbi Bacillus cereus 03BB10210
BCER405917 Bacillus cereus W10
BCER315749 ncbi Bacillus cytotoxicus NVH 391-9810
BCER288681 ncbi Bacillus cereus E33L10
BCER226900 ncbi Bacillus cereus ATCC 145799
BCEN331272 ncbi Burkholderia cenocepacia HI242410
BCEN331271 ncbi Burkholderia cenocepacia AU 105410
BCAN483179 ncbi Brucella canis ATCC 2336510
BANT592021 ncbi Bacillus anthracis A024810
BANT568206 ncbi Bacillus anthracis CDC 68410
BANT261594 ncbi Bacillus anthracis Ames Ancestor10
BANT260799 ncbi Bacillus anthracis Sterne10
BAMY326423 ncbi Bacillus amyloliquefaciens FZB4210
BAMB398577 ncbi Burkholderia ambifaria MC40-610
BAMB339670 ncbi Burkholderia ambifaria AMMD10
BABO262698 ncbi Brucella abortus bv. 1 str. 9-94110
AVAR240292 ncbi Anabaena variabilis ATCC 294139
ASAL382245 ncbi Aeromonas salmonicida salmonicida A44910
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL0310
APLE416269 ncbi Actinobacillus pleuropneumoniae L2010
AMET293826 ncbi Alkaliphilus metalliredigens QYMF9
AHYD196024 Aeromonas hydrophila dhakensis10


Names of the homologs of the genes in the group in each of these orgs
  EG12520   EG12518   EG12439   EG11959   EG11958   EG10816   EG10815   EG10814   EG10059   EG10058   
YPSE349747 YPSIP31758_0149YPSIP31758_0148YPSIP31758_0151YPSIP31758_0813YPSIP31758_4029YPSIP31758_1509YPSIP31758_1507YPSIP31758_2466YPSIP31758_1883YPSIP31758_2972
YPSE273123 YPTB0129YPTB0128YPTB0130YPTB3230YPTB3806YPTB2535YPTB2537YPTB1523YPTB2176YPTB2175
YPES386656 YPDSF_3518YPDSF_3519YPDSF_3517YPDSF_0556YPDSF_3327YPDSF_1910YPDSF_1913YPDSF_1469YPDSF_0557YPDSF_2672
YPES377628 YPN_0061YPN_0060YPN_0062YPN_3156YPN_3612YPN_2093YPN_2095YPN_2471YPN_1726YPN_1725
YPES360102 YPA_0116YPA_0115YPA_0117YPA_0306YPA_3791YPA_1994YPA_1996YPA_0803YPA_1617YPA_2519
YPES349746 YPANGOLA_A0477YPANGOLA_A0476YPANGOLA_A0479YPANGOLA_A0157YPANGOLA_A4097YPANGOLA_A1759YPANGOLA_A1761YPANGOLA_A3018YPANGOLA_A2263YPANGOLA_A1873
YPES214092 YPO3906YPO3907YPO3905YPO0958YPO3963YPO2499YPO2501YPO1508YPO2257YPO2256
YPES187410 Y0330Y0329Y0331Y3345Y3866Y1689Y1687Y2661Y2098Y1150
YENT393305 YE0143YE0142YE0144YE2814YE0010YE0010YE0011YE0009YE2005YE2004
VVUL216895 VV2_0063VV2_0062VV2_0063VV2_0062VV2_0063VV2_0063VV2_0064VV2_0062VV2_0063VV2_0062
VVUL196600 VVA0570VVA0569VVA0570VVA0162VVA0570VVA0570VVA0571VVA0569VVA0570VVA0569
VPAR223926 VPA1085VPA1672VPA1085VPA1086VPA1085VPA1085VPA1084VPA1086VPA1671VPA1672
VFIS312309 VF1446VF1445VF1446VF1445VF1446VF1446VF1447VF1445VF1446VF1445
VEIS391735 VEIS_2045VEIS_2025VEIS_2687VEIS_1088VEIS_2045VEIS_2045VEIS_2682VEIS_1088VEIS_3775VEIS_3776
VCHO345073 VC0395_0009VC0395_0010VC0395_0009VC0395_A0944VC0395_0009VC0395_0009VC0395_0008VC0395_0010VC0395_0009VC0395_0010
VCHO VCA0129VCA0128VCA0129VC1327VCA0129VCA0129VCA0130VCA0128VCA0129VCA0128
TTEN273068 TTE0205TTE0204TTE0205TTE0763TTE0764TTE0205TTE0206TTE0204TTE0764TTE0204
TSP1755 TETH514_0165TETH514_0164TETH514_0165TETH514_0164TETH514_0165TETH514_0165TETH514_0166TETH514_0164TETH514_0990TETH514_0164
TPSE340099 TETH39_2039TETH39_2040TETH39_2039TETH39_2040TETH39_2039TETH39_2039TETH39_2038TETH39_2040TETH39_2040
TMAR243274 TM_0955TM_0956TM_0955TM_0115TM_0955TM_0955TM_0958TM_0956TM_0112TM_0956
TLET416591 TLET_1328TLET_0184TLET_0390TLET_0185TLET_1328TLET_1325TLET_1327TLET_0358TLET_1327
STYP99287 STM3883STM3882STM3883STM3882STM3883STM3883STM3884STM3882STM3883STM3882
SSON300269 SSO_4411SSO_4410SSO_4412SSO_2205SSO_3920SSO_3920SSO_4409SSO_3919SSO_1219SSO_1218
SSAP342451 SSP1393SSP1394SSP1393SSP1394SSP1393SSP1393SSP1392SSP1394SSP1393
SPRO399741 SPRO_4766SPRO_4767SPRO_4765SPRO_1029SPRO_4899SPRO_4899SPRO_4898SPRO_4900SPRO_2247SPRO_2246
SPEA398579 SPEA_2283SPEA_0515SPEA_0516SPEA_2284SPEA_0516SPEA_0516SPEA_0517SPEA_0515SPEA_0516SPEA_0515
SMEL266834 SMB21589SMB21588SMB21590SMB21376SMC02772SMB20352SMB21345SMC02325SMB20506SMB20507
SMED366394 SMED_4910SMED_4909SMED_4911SMED_4768SMED_5745SMED_3767SMED_4740SMED_0226SMED_3602SMED_3601
SHIGELLA YTFTYTFRRBSCMGLARBSCRBSCMGLAARAHARAG
SHAL458817 SHAL_2011SHAL_0580SHAL_2010SHAL_0580SHAL_0580SHAL_0581SHAL_0579SHAL_0580SHAL_0579
SGLO343509 SG0613SG0964SG2401SG0964SG0613SG0613SG0614SG0964SG0964
SFLE373384 SFV_4262SFV_4263SFV_4261SFV_2224SFV_3749SFV_3749SFV_3973SFV_1942SFV_1943
SFLE198214 AAN45679.1AAN45680.1AAN45678.1AAN43755.1AAN45272.1AAN45272.1AAN43755.1AAN43497.1AAN43498.1
SERY405948 SACE_2988SACE_5659SACE_5660SACE_5659SACE_1882SACE_5660SACE_5660SACE_5659SACE_5660SACE_2987
SENT454169 SEHA_C4216SEHA_C4215SEHA_C4216SEHA_C4215SEHA_C4216SEHA_C4216SEHA_C4217SEHA_C4215SEHA_C4216SEHA_C4215
SENT321314 SCH_3796SCH_3795SCH_3796SCH_3795SCH_3796SCH_3796SCH_3797SCH_3795SCH_3796SCH_3795
SENT220341 STY3895STY3896STY3895STY3896STY3895STY3895STY3894STY3896STY3895STY3896
SENT209261 T3636T3637T3636T3637T3636T3636T3635T3637T3636T3637
SDYS300267 SDY_4248SDY_4247SDY_4249SDY_4128SDY_3997SDY_3997SDY_4130SDY_1121SDY_1122SDY_1121
SCO SCO6568SCO2746SCO2747SCO2405SCO2747SCO2747SCO2747SCO2746SCO2746
SBOY300268 SBO_4216SBO_3126SBO_4215SBO_2178SBO_3764SBO_3764SBO_4218SBO_3575SBO_1107SBO_1106
SAVE227882 SAV1827SAV970SAV968SAV7416SAV5318SAV5318SAV5318SAV7416SAV968SAV5319
SAGA211110 GBS0114GBS0115GBS0114GBS0115GBS0114GBS0114GBS0113GBS0115GBS0114GBS0115
SAGA208435 SAG_0115SAG_0115SAG_0116SAG_0115SAG_0115SAG_0114SAG_0116SAG_0115SAG_0116
SAGA205921 SAK_0167SAK_0168SAK_0167SAK_0168SAK_0167SAK_0167SAK_0166SAK_0168SAK_0167SAK_0168
RXYL266117 RXYL_3002RXYL_0946RXYL_3002RXYL_3003RXYL_3002RXYL_0947RXYL_0948RXYL_0946RXYL_3002RXYL_0946
RSP101510 RHA1_RO00821RHA1_RO08205RHA1_RO00821RHA1_RO04085RHA1_RO00821RHA1_RO00821RHA1_RO00819RHA1_RO04085RHA1_RO00821RHA1_RO04085
RLEG216596 RL2378RL2377RL2379RL2449RL1746RL1746RL2721RL4654RL4229RL4230
RFER338969 RFER_0439RFER_3129RFER_0439RFER_3129RFER_0439RFER_3130RFER_1903RFER_3129RFER_0439RFER_3129
REUT381666 H16_B1499H16_B1498H16_B1499H16_B1498H16_B1499H16_B1499H16_B1498H16_B1499H16_B1498
REUT264198 REUT_A1652REUT_A1653REUT_B4134REUT_A1653REUT_A1652REUT_A1652REUT_B4136REUT_A1653REUT_B4134REUT_B4133
RETL347834 RHE_CH02087RHE_CH02086RHE_CH02088RHE_PB00077RHE_CH01211RHE_PF00034RHE_CH00612RHE_CH03989RHE_CH03693RHE_CH03694
PSYR223283 PSPTO_2400PSPTO_3489PSPTO_2400PSPTO_3489PSPTO_3488PSPTO_3488PSPTO_2399PSPTO_3489PSPTO_2640PSPTO_2639
PSYR205918 PSYR_2570PSYR_3264PSYR_2570PSYR_3264PSYR_2570PSYR_2570PSYR_2151PSYR_3264PSYR_2373PSYR_2372
PPRO298386 PBPRB1558PBPRB0473PBPRB1558PBPRB1871PBPRB1558PBPRB1558PBPRB1559PBPRB1557PBPRB1558PBPRB0473
PMUL272843 PM1378PM0155PM1378PM1326PM0154PM0154PM0153PM0155PM0154PM1379
PMOB403833 PMOB_0922PMOB_1601PMOB_0922PMOB_1601PMOB_1602PMOB_0922PMOB_0923PMOB_0922PMOB_1601
PLUM243265 PLU0057PLU0056PLU0057PLU0056PLU0057PLU0057PLU0058PLU0056PLU0057PLU0056
PING357804 PING_2807PING_2808PING_0342PING_0341PING_0342PING_0342PING_0343PING_0341PING_0342PING_2808
PFLU216595 PFLU2585PFLU3995PFLU3726PFLU3119PFLU3994PFLU3994PFLU3996PFLU2584PFLU4682PFLU4683
OIHE221109 OB2573OB2574OB2573OB2574OB2573OB2573OB2572OB2574OB2573OB2574
OANT439375 OANT_1416OANT_1417OANT_1415OANT_0291OANT_4066OANT_4066OANT_0292OANT_3347OANT_0290OANT_2808
MTHE264732 MOTH_0614MOTH_0613MOTH_0614MOTH_0613MOTH_0614MOTH_0614MOTH_0612MOTH_0613MOTH_0614MOTH_0613
MSUC221988 MS0199MS0062MS1610MS0642MS0199MS0199MS1612MS0062MS0061MS0062
MSP400668 MMWYL1_3533MMWYL1_3534MMWYL1_3532MMWYL1_1986MMWYL1_3108MMWYL1_1987MMWYL1_3110MMWYL1_1987MMWYL1_1986
MLOT266835 MLL7665MLL3598MLL7665MLL5705MLL2145MLL7011MLL1012MLL3598MLL1013MLL3598
LLAC272623 L83296L83296L84240L83296L83296L82310L84240L83296L84240
LCAS321967 LSEI_0309LSEI_0308LSEI_0309LSEI_0308LSEI_0309LSEI_0309LSEI_0310LSEI_0308LSEI_0309
LACI272621 LBA1482LBA1483LBA1482LBA1483LBA1482LBA1482LBA1481LBA1483LBA1482LBA1483
KPNE272620 GKPORF_B3986GKPORF_B3985GKPORF_B3987GKPORF_B4919GKPORF_B3497GKPORF_B3497GKPORF_B3498GKPORF_B3496GKPORF_B1556GKPORF_B1557
HSOM228400 HSM_0822HSM_0431HSM_0432HSM_0557HSM_0558HSM_0091HSM_0092HSM_0090HSM_0091HSM_0823
HINF71421 HI_0503HI_0502HI_0503HI_0823HI_0503HI_0503HI_0504HI_0502HI_0503HI_0502
HINF374930 CGSHIEE_00475CGSHIEE_00480CGSHIEE_00475CGSHIEE_07945CGSHIEE_00475CGSHIEE_00475CGSHIEE_00470CGSHIEE_00480CGSHIEE_00475CGSHIEE_00480
HINF281310 NTHI0631NTHI0630NTHI0631NTHI0630NTHI0631NTHI0631NTHI0632NTHI0630NTHI0631NTHI0630
HCHE349521 HCH_02470HCH_02469HCH_02470HCH_01167HCH_02470HCH_02470HCH_02467HCH_01167HCH_02470HCH_01167
GTHE420246 GTNG_3171GTNG_3172GTNG_1814GTNG_3172GTNG_3171GTNG_3171GTNG_3170GTNG_3172GTNG_3171GTNG_3172
GKAU235909 GK1893GK3228GK3227GK3228GK3227GK3227GK3226GK3228GK3227GK3228
ESP42895 ENT638_0414ENT638_0413ENT638_0415ENT638_0289ENT638_0288ENT638_4114ENT638_4113ENT638_4115ENT638_2474ENT638_2475
EFER585054 EFER_4308EFER_4307EFER_4309EFER_4283EFER_4284EFER_4049EFER_4050EFER_4048EFER_1125EFER_1124
ECOO157 YTFTZ5839YJFFMGLAZ5690RBSCRBSBRBSAARAH_BARAG
ECOL83334 ECS5207ECS5206ECS5208ECS3041ECS5072ECS4692ECS4693ECS4691ECS2607ECS2608
ECOL585397 ECED1_5086ECED1_5085ECED1_5086ECED1_4821ECED1_4820ECED1_4440ECED1_4441ECED1_4439ECED1_2164ECED1_2165
ECOL585057 ECIAI39_4700ECIAI39_4699ECIAI39_2749ECIAI39_4511ECIAI39_4510ECIAI39_4355ECIAI39_4356ECIAI39_4354ECIAI39_1154ECIAI39_1153
ECOL585056 ECUMN_4763ECUMN_4762ECUMN_4764ECUMN_2482ECUMN_4280ECUMN_4280ECUMN_4281ECUMN_4279ECUMN_2193ECUMN_2194
ECOL585055 EC55989_4788EC55989_4787EC55989_4789EC55989_2399EC55989_4225EC55989_4225EC55989_4226EC55989_4224EC55989_2075EC55989_2076
ECOL585035 ECS88_4820ECS88_4819ECS88_4821ECS88_4588ECS88_4172ECS88_4172ECS88_4173ECS88_4171ECS88_1954ECS88_1955
ECOL585034 ECIAI1_4462ECIAI1_4461ECIAI1_4463ECIAI1_2226ECIAI1_3934ECIAI1_3934ECIAI1_3935ECIAI1_3933ECIAI1_1983ECIAI1_1984
ECOL481805 ECOLC_3781ECOLC_3782ECOLC_3780ECOLC_3939ECOLC_3940ECOLC_4244ECOLC_4243ECOLC_4245ECOLC_1736ECOLC_1735
ECOL469008 ECBD_3804ECBD_3805ECBD_3803ECBD_3943ECBD_3944ECBD_4280ECBD_4279ECBD_4281ECBD_1742ECBD_1741
ECOL439855 ECSMS35_4707ECSMS35_4706ECSMS35_4708ECSMS35_4553ECSMS35_4552ECSMS35_4118ECSMS35_4119ECSMS35_4117ECSMS35_1287ECSMS35_1286
ECOL413997 ECB_04098ECB_04097ECB_04099ECB_03959ECB_03958ECB_03636ECB_03637ECB_03635ECB_01867ECB_01868
ECOL409438 ECSE_4535ECSE_4534ECSE_4536ECSE_4385ECSE_4384ECSE_4040ECSE_4041ECSE_4039ECSE_2131ECSE_2132
ECOL405955 APECO1_2162APECO1_2163APECO1_2161APECO1_2363APECO1_2364APECO1_2713APECO1_2712APECO1_2714APECO1_944APECO1_945
ECOL364106 UTI89_C4834UTI89_C4833UTI89_C4835UTI89_C4682UTI89_C4305UTI89_C4305UTI89_C4306UTI89_C4304UTI89_C2099UTI89_C2100
ECOL362663 ECP_4479ECP_4478ECP_4480ECP_4330ECP_3344ECP_3671ECP_3951ECP_3948ECP_1840ECP_1841
ECOL331111 ECE24377A_4799ECE24377A_4798ECE24377A_4800ECE24377A_2444ECE24377A_4266ECE24377A_4266ECE24377A_4267ECE24377A_4265ECE24377A_2130ECE24377A_2131
ECOL316407 ECK4225:JW5753:B4230ECK4224:JW5752:B4485ECK4226:JW5754:B4231ECK4080:JW4048:B4087ECK4079:JW4047:B4086ECK3744:JW3729:B3750ECK3745:JW3730:B3751ECK3743:JW3728:B3749ECK1897:JW1887:B4460ECK1898:JW1888:B1900
ECOL199310 C5327C5326C5328C5093C5092C4678C4679C4677C2312C2313
ECAR218491 ECA4234ECA4235ECA4233ECA0011ECA1461ECA0012ECA0013ECA0011ECA2271ECA2272
CVIO243365 CV_3017CV_3018CV_3017CV_3018CV_3017CV_3017CV_3016CV_3018CV_3017CV_3018
CTET212717 CTC_02349CTC_02350CTC_02349CTC_00905CTC_02349CTC_02349CTC_02347CTC_02350CTC_02349CTC_02350
CPER195103 CPF_1881CPF_1549CPF_1881CPF_1882CPF_1881CPF_1881CPF_1882CPF_1881CPF_1882
CPER195102 CPE1629CPE1342CPE1629CPE1630CPE1629CPE1629CPE1628CPE1630CPE1629CPE1630
CNOV386415 NT01CX_0163NT01CX_0164NT01CX_0163NT01CX_0164NT01CX_0163NT01CX_0163NT01CX_0162NT01CX_0164NT01CX_0163NT01CX_0164
CGLU196627 CG1412CG1411CG1412CG1411CG1412CG1412CG1413CG1412CG1411
CDIF272563 CD0302CD0301CD0302CD0301CD1588CD0302CD0300CD0301CD0302CD0301
CBOT515621 CLJ_B1313CLJ_B1312CLJ_B1313CLJ_B1312CLJ_B1313CLJ_B1313CLJ_B1315CLJ_B1312CLJ_B1313CLJ_B1312
CBOT508765 CLL_A1530CLL_A1529CLL_A1530CLL_A1529CLL_A1530CLL_A1530CLL_A1531CLL_A1529CLL_A1530CLL_A1529
BXEN266265 BXE_B1397BXE_C1350BXE_B1397BXE_C1350BXE_B1397BXE_C1349BXE_B0894BXE_C1350BXE_B1397BXE_C1350
BWEI315730 BCERKBAB4_0582BCERKBAB4_0581BCERKBAB4_0582BCERKBAB4_0581BCERKBAB4_0582BCERKBAB4_0582BCERKBAB4_0583BCERKBAB4_0581BCERKBAB4_0582BCERKBAB4_0581
BVIE269482 BCEP1808_6550BCEP1808_6551BCEP1808_6549BCEP1808_1389BCEP1808_1507BCEP1808_3381BCEP1808_1558BCEP1808_1389BCEP1808_0598BCEP1808_0597
BTHU412694 BALH_0611BALH_0609BALH_0611BALH_0609BALH_0611BALH_0611BALH_0612BALH_0609BALH_0611BALH_0609
BTHU281309 BT9727_0579BT9727_0578BT9727_0579BT9727_0578BT9727_0579BT9727_0579BT9727_0580BT9727_0578BT9727_0579BT9727_0578
BTHA271848 BTH_I2344BTH_I2343BTH_I2345BTH_I2434BTH_I2433BTH_I2433BTH_I2435BTH_II0211BTH_I1181BTH_I1180
BSUI470137 BSUIS_A1690BSUIS_B0929BSUIS_A1690BSUIS_B0929BSUIS_A1690BSUIS_A1690BSUIS_B0850BSUIS_A1691BSUIS_A1690
BSUI204722 BR_1631BR_A0936BR_1631BR_A0936BR_1631BR_1631BR_A0858BR_1632BR_1631BR_A1151
BSUB BSU35950BSU35940BSU35950BSU35940BSU35950BSU35950BSU35960BSU35940BSU35950BSU35940
BSP376 BRADO1809BRADO1808BRADO1810BRADO1394BRADO1819BRADO1809BRADO1807BRADO1394BRADO2362BRADO1394
BSP36773 BCEP18194_A4682BCEP18194_B2370BCEP18194_A4682BCEP18194_B0624BCEP18194_B0886BCEP18194_B0886BCEP18194_B0884BCEP18194_A4569BCEP18194_A3705BCEP18194_A3704
BPUM315750 BPUM_3267BPUM_3266BPUM_3267BPUM_3266BPUM_3267BPUM_3267BPUM_3268BPUM_3266BPUM_3267BPUM_3266
BPSE320373 BURPS668_A0456BURPS668_1908BURPS668_A0456BURPS668_A0286BURPS668_1909BURPS668_1909BURPS668_1907BURPS668_A0286BURPS668_3446BURPS668_3447
BPSE320372 BURPS1710B_B1955BURPS1710B_A2229BURPS1710B_B2111BURPS1710B_B1956BURPS1710B_A2230BURPS1710B_A2230BURPS1710B_A2228BURPS1710B_B1956BURPS1710B_A3759BURPS1710B_A3760
BPSE272560 BPSS0141BPSL2967BPSS0256BPSS0142BPSL1791BPSL1791BPSL1793BPSS0142BPSL2966BPSL2967
BMEL359391 BAB1_1649BAB2_0299BAB1_1649BAB2_0299BAB1_1649BAB1_1649BAB2_0377BAB2_1110BAB1_1649BAB2_1110
BMEL224914 BMEI0392BMEII0361BMEI0392BMEII0361BMEI0392BMEI0392BMEII0435BMEII0145BMEI0392BMEII0145
BMAL320389 BMA10247_0858BMA10247_0857BMA10247_0857BMA10247_0858BMA10247_0858BMA10247_0856BMA10247_3300BMA10247_3301BMA10247_3300
BMAL320388 BMASAVP1_A1640BMASAVP1_A1641BMASAVP1_A1641BMASAVP1_A1640BMASAVP1_A1640BMASAVP1_A1642BMASAVP1_A0405BMASAVP1_A0404BMASAVP1_A0405
BMAL243160 BMA_1196BMA_1197BMA_1197BMA_1196BMA_1196BMA_1198BMA_2485BMA_2484BMA_2485
BLIC279010 BL02442BL02441BL01748BL02441BL02442BL02442BL02443BL02441BL02442BL02441
BJAP224911 BLR3202BLR3201BLR3203BLR2270BLL2676BLR1122BLR3200BLR1122BLL5784
BHAL272558 BH2321BH3730BH3731BH3730BH3731BH3731BH3732BH3730BH3731BH2322
BCLA66692 ABC3545ABC3546ABC0411ABC3546ABC3545ABC3545ABC3544ABC3546ABC3545ABC3546
BCER572264 BCA_0706BCA_0705BCA_0706BCA_0705BCA_0706BCA_0706BCA_0707BCA_0705BCA_0706BCA_0705
BCER405917 BCE_0736BCE_0735BCE_0736BCE_0735BCE_0736BCE_0736BCE_0737BCE_0735BCE_0736BCE_0735
BCER315749 BCER98_0563BCER98_0562BCER98_0563BCER98_0562BCER98_0563BCER98_0563BCER98_0564BCER98_0562BCER98_0563BCER98_0562
BCER288681 BCE33L0578BCE33L0577BCE33L0578BCE33L0577BCE33L0578BCE33L0578BCE33L0579BCE33L0577BCE33L0578BCE33L0577
BCER226900 BC_0663BC_0662BC_0663BC_0662BC_0663BC_0663BC_0662BC_0663BC_0662
BCEN331272 BCEN2424_5990BCEN2424_5991BCEN2424_5989BCEN2424_5039BCEN2424_4818BCEN2424_4818BCEN2424_4820BCEN2424_1425BCEN2424_0623BCEN2424_0622
BCEN331271 BCEN_5625BCEN_5626BCEN_5624BCEN_3328BCEN_3549BCEN_3549BCEN_3547BCEN_0943BCEN_0140BCEN_0139
BCAN483179 BCAN_A1668BCAN_B0956BCAN_A1668BCAN_B0956BCAN_A1668BCAN_A1668BCAN_B0875BCAN_A1669BCAN_A1668BCAN_B1180
BANT592021 BAA_0752BAA_0751BAA_0752BAA_0751BAA_0752BAA_0752BAA_0753BAA_0751BAA_0752BAA_0751
BANT568206 BAMEG_3918BAMEG_3919BAMEG_3918BAMEG_3919BAMEG_3918BAMEG_3918BAMEG_3917BAMEG_3919BAMEG_3918BAMEG_3919
BANT261594 GBAA0668GBAA0667GBAA0668GBAA0667GBAA0668GBAA0668GBAA0669GBAA0667GBAA0668GBAA0667
BANT260799 BAS0635BAS0634BAS0635BAS0634BAS0635BAS0635BAS0636BAS0634BAS0635BAS0634
BAMY326423 RBAM_033120RBAM_033110RBAM_033120RBAM_033110RBAM_033120RBAM_033120RBAM_033130RBAM_033110RBAM_033120RBAM_033110
BAMB398577 BAMMC406_5926BAMMC406_5925BAMMC406_5927BAMMC406_4967BAMMC406_4722BAMMC406_4722BAMMC406_4724BAMMC406_1344BAMMC406_0548BAMMC406_0547
BAMB339670 BAMB_6195BAMB_6194BAMB_6196BAMB_4447BAMB_4199BAMB_4199BAMB_4201BAMB_4447BAMB_0524BAMB_0523
BABO262698 BRUAB1_1619BRUAB2_0297BRUAB1_1619BRUAB2_0297BRUAB1_1619BRUAB1_1619BRUAB2_0373BRUAB2_1088BRUAB1_1619BRUAB2_1088
AVAR240292 AVA_2173AVA_2172AVA_2173AVA_2172AVA_2173AVA_2173AVA_2171AVA_2172AVA_2172
ASAL382245 ASA_2138ASA_2139ASA_2137ASA_0215ASA_1969ASA_1969ASA_1968ASA_2395ASA_2394ASA_2395
APLE434271 APJL_1702APJL_1701APJL_1702APJL_1451APJL_1702APJL_1702APJL_1703APJL_1701APJL_1702APJL_1701
APLE416269 APL_1671APL_1670APL_1671APL_1419APL_1671APL_1671APL_1672APL_1670APL_1671APL_1670
AMET293826 AMET_0458AMET_0587AMET_3797AMET_0587AMET_0588AMET_0588AMET_2813AMET_0588AMET_2813
AHYD196024 AHA_2311AHA_2310AHA_2311AHA_2310AHA_2311AHA_2311AHA_2312AHA_2310AHA_1905AHA_1904


Organism features enriched in list (features available for 147 out of the 154 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Pairs 0.001965340112
Disease:Anthrax 0.003919344
Disease:Brucellosis 0.000968055
Disease:Bubonic_plague 0.000237866
Disease:Dysentery 0.000237866
Disease:Gastroenteritis 0.00010331013
Endospores:No 0.000018733211
Endospores:Yes 2.309e-73053
GC_Content_Range4:0-40 0.000066135213
GC_Content_Range4:40-60 1.400e-783224
GC_Content_Range7:30-40 0.001007428166
GC_Content_Range7:50-60 4.419e-748107
Genome_Size_Range5:0-2 1.036e-165155
Genome_Size_Range5:2-4 0.000475134197
Genome_Size_Range5:4-6 1.197e-1180184
Genome_Size_Range5:6-10 1.423e-72847
Genome_Size_Range9:1-2 1.380e-125128
Genome_Size_Range9:2-3 0.001163818120
Genome_Size_Range9:4-5 0.00004834096
Genome_Size_Range9:5-6 3.692e-64088
Genome_Size_Range9:6-8 0.00003132138
Genome_Size_Range9:8-10 0.001198079
Gram_Stain:Gram_Neg 0.001930798333
Habitat:Aquatic 0.00049601191
Habitat:Multiple 0.002224958178
Habitat:Terrestrial 0.00021301731
Motility:No 0.000055021151
Motility:Yes 0.000031188267
Oxygen_Req:Aerobic 0.002675434185
Oxygen_Req:Anaerobic 0.002235915102
Oxygen_Req:Facultative 9.574e-1285201
Pathogenic_in:Animal 0.00128112766
Pathogenic_in:Human 0.000013375213
Pathogenic_in:No 0.000136939226
Shape:Coccus 0.0001218882
Shape:Rod 5.123e-13123347
Temp._range:Mesophilic 0.0027399130473



Back to top


ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 410
Effective number of orgs (counting one per cluster within 468 clusters): 320

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM40
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A0
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110180
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103310
XFAS405440 ncbi Xylella fastidiosa M120
XFAS183190 ncbi Xylella fastidiosa Temecula10
XFAS160492 ncbi Xylella fastidiosa 9a5c0
XCAM487884 Xanthomonas campestris pv. paulliniae0
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-100
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80040
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339130
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3060
XAUT78245 ncbi Xanthobacter autotrophicus Py20
WSUC273121 ncbi Wolinella succinogenes DSM 17400
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/271
TWHI203267 ncbi Tropheryma whipplei Twist1
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTUR377629 ncbi Teredinibacter turnerae T79010
TTHE300852 ncbi Thermus thermophilus HB80
TTHE262724 ncbi Thermus thermophilus HB270
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TFUS269800 ncbi Thermobifida fusca YX0
TERY203124 ncbi Trichodesmium erythraeum IMS1011
TELO197221 ncbi Thermosynechococcus elongatus BP-10
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12510
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252590
TDEN243275 ncbi Treponema denticola ATCC 354051
TCRU317025 ncbi Thiomicrospira crunogena XCL-20
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen1
STRO369723 ncbi Salinispora tropica CNB-4400
STOK273063 ncbi Sulfolobus tokodaii 70
STHE322159 ncbi Streptococcus thermophilus LMD-90
STHE299768 ncbi Streptococcus thermophilus CNRZ10660
STHE264199 ncbi Streptococcus thermophilus LMG 183110
SSUI391296 ncbi Streptococcus suis 98HAH330
SSUI391295 ncbi Streptococcus suis 05ZYH330
SSP84588 ncbi Synechococcus sp. WH 81020
SSP64471 ncbi Synechococcus sp. CC93110
SSP387093 ncbi Sulfurovum sp. NBC37-10
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)0
SSP321327 ncbi Synechococcus sp. JA-3-3Ab0
SSP1148 ncbi Synechocystis sp. PCC 68030
SSP1131 Synechococcus sp. CC96050
SSOL273057 ncbi Sulfolobus solfataricus P20
SSED425104 ncbi Shewanella sediminis HAW-EB30
SRUB309807 ncbi Salinibacter ruber DSM 138550
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370552 ncbi Streptococcus pyogenes MGAS102700
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103940
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SPNE488221 ncbi Streptococcus pneumoniae 705850
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-60
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-140
SPNE171101 ncbi Streptococcus pneumoniae R60
SPNE170187 ncbi Streptococcus pneumoniae G540
SPNE1313 Streptococcus pneumoniae0
SONE211586 ncbi Shewanella oneidensis MR-10
SMUT210007 ncbi Streptococcus mutans UA1590
SMAR399550 ncbi Staphylothermus marinus F10
SLOI323850 ncbi Shewanella loihica PV-40
SLAC55218 Ruegeria lacuscaerulensis0
SGOR29390 Streptococcus gordonii Challis0
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB0
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122280
SEPI176279 ncbi Staphylococcus epidermidis RP62A0
SELO269084 ncbi Synechococcus elongatus PCC 63010
SDEN318161 ncbi Shewanella denitrificans OS2170
SBAL402882 ncbi Shewanella baltica OS1850
SBAL399599 ncbi Shewanella baltica OS1950
SAUR93062 ncbi Staphylococcus aureus aureus COL0
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83250
SAUR426430 ncbi Staphylococcus aureus aureus Newman0
SAUR418127 ncbi Staphylococcus aureus aureus Mu30
SAUR367830 Staphylococcus aureus aureus USA3000
SAUR359787 ncbi Staphylococcus aureus aureus JH10
SAUR359786 ncbi Staphylococcus aureus aureus JH90
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4760
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2520
SAUR273036 ncbi Staphylococcus aureus RF1220
SAUR196620 ncbi Staphylococcus aureus aureus MW20
SAUR158879 ncbi Staphylococcus aureus aureus N3150
SAUR158878 ncbi Staphylococcus aureus aureus Mu500
SARE391037 ncbi Salinispora arenicola CNS-2050
SALA317655 ncbi Sphingopyxis alaskensis RB22560
SACI56780 ncbi Syntrophus aciditrophicus SB0
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RTYP257363 ncbi Rickettsia typhi Wilmington0
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170250
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332091
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RPOM246200 ncbi Ruegeria pomeroyi DSS-30
RPAL316058 ncbi Rhodopseudomonas palustris HaA20
RPAL316057 ncbi Rhodopseudomonas palustris BisB50
RPAL316056 ncbi Rhodopseudomonas palustris BisB180
RPAL316055 ncbi Rhodopseudomonas palustris BisA530
RPAL258594 ncbi Rhodopseudomonas palustris CGA0090
RMET266264 ncbi Ralstonia metallidurans CH340
RMAS416276 ncbi Rickettsia massiliae MTU50
RFEL315456 ncbi Rickettsia felis URRWXCal20
RCON272944 ncbi Rickettsia conorii Malish 70
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RALB246199 Ruminococcus albus 80
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97900
PTHE370438 ncbi Pelotomaculum thermopropionicum SI0
PSTU379731 ncbi Pseudomonas stutzeri A15010
PSP56811 Psychrobacter sp.0
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-10
PRUM264731 ncbi Prevotella ruminicola 230
PPUT76869 ncbi Pseudomonas putida GB-11
PPUT351746 ncbi Pseudomonas putida F11
PPUT160488 ncbi Pseudomonas putida KT24401
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257450
PMEN399739 ncbi Pseudomonas mendocina ymp0
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74547 ncbi Prochlorococcus marinus MIT 93130
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR59920 ncbi Prochlorococcus marinus NATL2A0
PMAR167555 ncbi Prochlorococcus marinus NATL1A0
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13750
PMAR146891 ncbi Prochlorococcus marinus AS96010
PLUT319225 ncbi Chlorobium luteolum DSM 2730
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 170
PHOR70601 ncbi Pyrococcus horikoshii OT30
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1250
PGIN242619 ncbi Porphyromonas gingivalis W830
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PENT384676 ncbi Pseudomonas entomophila L481
PDIS435591 ncbi Parabacteroides distasonis ATCC 85030
PCRY335284 ncbi Psychrobacter cryohalolentis K50
PCAR338963 ncbi Pelobacter carbinolicus DSM 23800
PATL342610 ncbi Pseudoalteromonas atlantica T6c0
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PARC259536 ncbi Psychrobacter arcticus 273-40
PAER208964 ncbi Pseudomonas aeruginosa PAO11
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA141
PAER178306 ncbi Pyrobaculum aerophilum IM20
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
OCAR504832 ncbi Oligotropha carboxidovorans OM50
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2550
NSP387092 ncbi Nitratiruptor sp. SB155-20
NSP103690 ncbi Nostoc sp. PCC 71200
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
NOCE323261 ncbi Nitrosococcus oceani ATCC 197070
NMUL323848 ncbi Nitrosospira multiformis ATCC 251960
NMEN374833 ncbi Neisseria meningitidis 0534420
NMEN272831 ncbi Neisseria meningitidis FAM180
NMEN122587 ncbi Neisseria meningitidis Z24910
NMEN122586 ncbi Neisseria meningitidis MC580
NHAM323097 ncbi Nitrobacter hamburgensis X140
NGON242231 ncbi Neisseria gonorrhoeae FA 10900
NFAR247156 ncbi Nocardia farcinica IFM 101520
NEUT335283 ncbi Nitrosomonas eutropha C910
NEUR228410 ncbi Nitrosomonas europaea ATCC 197180
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124440
MXAN246197 ncbi Myxococcus xanthus DK 16220
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-10
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra0
MTUB336982 ncbi Mycobacterium tuberculosis F110
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MTBRV ncbi Mycobacterium tuberculosis H37Rv0
MTBCDC ncbi Mycobacterium tuberculosis CDC15510
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSP409 Methylobacterium sp.0
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPET420662 ncbi Methylibium petroleiphilum PM10
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR394221 ncbi Maricaulis maris MCS100
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MMAG342108 ncbi Magnetospirillum magneticum AMB-10
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2321
MHYO262722 ncbi Mycoplasma hyopneumoniae 74481
MHYO262719 ncbi Mycoplasma hyopneumoniae J1
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK0
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MFLA265072 ncbi Methylobacillus flagellatus KT0
MEXT419610 ncbi Methylobacterium extorquens PA10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MCAP243233 ncbi Methylococcus capsulatus Bath0
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P20
MBOV233413 ncbi Mycobacterium bovis AF2122/970
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MAVI243243 ncbi Mycobacterium avium 1040
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAQU351348 ncbi Marinobacter aquaeolei VT80
MAER449447 ncbi Microcystis aeruginosa NIES-8430
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
MABS561007 ncbi Mycobacterium abscessus ATCC 199770
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53340
LSPH444177 ncbi Lysinibacillus sphaericus C3-410
LSAK314315 ncbi Lactobacillus sakei sakei 23K0
LREU557436 ncbi Lactobacillus reuteri DSM 200160
LPNE400673 ncbi Legionella pneumophila Corby0
LPNE297246 ncbi Legionella pneumophila Paris0
LPNE297245 ncbi Legionella pneumophila Lens0
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 10
LPLA220668 ncbi Lactobacillus plantarum WCFS10
LMON265669 ncbi Listeria monocytogenes 4b F23650
LMON169963 ncbi Listeria monocytogenes EGD-e0
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82930
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-000
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1300
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566010
LINN272626 ncbi Listeria innocua Clip112620
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LBRE387344 ncbi Lactobacillus brevis ATCC 3670
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1970
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5500
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)0
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)0
JSP375286 ncbi Janthinobacterium sp. Marseille0
ILOI283942 ncbi Idiomarina loihiensis L2TR0
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSAL478009 ncbi Halobacterium salinarum R10
HPYL85963 ncbi Helicobacter pylori J990
HPYL357544 ncbi Helicobacter pylori HPAG10
HPY ncbi Helicobacter pylori 266950
HNEP81032 Hyphomonas neptunium0
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMAR272569 ncbi Haloarcula marismortui ATCC 430490
HHEP235279 ncbi Helicobacter hepaticus ATCC 514490
HHAL349124 ncbi Halorhodospira halophila SL10
HDUC233412 ncbi Haemophilus ducreyi 35000HP0
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HARS204773 ncbi Herminiimonas arsenicoxydans0
HACI382638 ncbi Helicobacter acinonychis Sheeba0
GURA351605 ncbi Geobacter uraniireducens Rf40
GSUL243231 ncbi Geobacter sulfurreducens PCA0
GOXY290633 ncbi Gluconobacter oxydans 621H0
GMET269799 ncbi Geobacter metallireducens GS-150
GFOR411154 ncbi Gramella forsetii KT08030
GBET391165 ncbi Granulibacter bethesdensis CGDNIH10
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-000
FTUL418136 ncbi Francisella tularensis tularensis WY96-34180
FTUL401614 ncbi Francisella novicida U1120
FTUL393115 ncbi Francisella tularensis tularensis FSC1980
FTUL393011 ncbi Francisella tularensis holarctica OSU180
FTUL351581 Francisella tularensis holarctica FSC2000
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S850
FSP1855 Frankia sp. EAN1pec1
FSP106370 ncbi Frankia sp. CcI30
FRANT ncbi Francisella tularensis tularensis SCHU S40
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250170
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B10
FMAG334413 ncbi Finegoldia magna ATCC 293280
FJOH376686 ncbi Flavobacterium johnsoniae UW1010
FALN326424 ncbi Frankia alni ACN14a0
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ELIT314225 ncbi Erythrobacter litoralis HTCC25940
EFAE226185 ncbi Enterococcus faecalis V5830
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough0
DSP255470 ncbi Dehalococcoides sp. CBDB10
DSP216389 ncbi Dehalococcoides sp. BAV10
DRAD243230 ncbi Deinococcus radiodurans R10
DPSY177439 ncbi Desulfotalea psychrophila LSv540
DOLE96561 ncbi Desulfococcus oleovorans Hxd30
DNOD246195 ncbi Dichelobacter nodosus VCS1703A0
DHAF138119 ncbi Desulfitobacterium hafniense Y510
DETH243164 ncbi Dehalococcoides ethenogenes 1950
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G200
DARO159087 ncbi Dechloromonas aromatica RCB0
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA0
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTEP194439 ncbi Chlorobium tepidum TLS0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CSP78 Caulobacter sp.0
CSP501479 Citreicella sp. SE451
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)0
CPSY167879 ncbi Colwellia psychrerythraea 34H0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE250
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10620
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CKLU431943 ncbi Clostridium kluyveri DSM 5550
CJEJ407148 ncbi Campylobacter jejuni jejuni 811160
CJEJ360109 ncbi Campylobacter jejuni doylei 269.970
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1760
CJEJ195099 ncbi Campylobacter jejuni RM12210
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111680
CJEI306537 ncbi Corynebacterium jeikeium K4110
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29011
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334060
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3810
CFET360106 ncbi Campylobacter fetus fetus 82-400
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CEFF196164 ncbi Corynebacterium efficiens YS-3140
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131290
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C0
CCUR360105 ncbi Campylobacter curvus 525.920
CCON360104 ncbi Campylobacter concisus 138260
CCHL340177 ncbi Chlorobium chlorochromatii CaD30
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1110
CBUR360115 ncbi Coxiella burnetii RSA 3310
CBUR227377 ncbi Coxiella burnetii RSA 4930
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto0
CBOT498213 ncbi Clostridium botulinum B1 str. Okra0
CBOT441772 ncbi Clostridium botulinum F str. Langeland0
CBOT441771 ncbi Clostridium botulinum A str. Hall0
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193970
CBOT36826 Clostridium botulinum A0
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN0
CBLO203907 ncbi Candidatus Blochmannia floridanus0
CACE272562 ncbi Clostridium acetobutylicum ATCC 8241
CABO218497 ncbi Chlamydophila abortus S26/30
BTUR314724 ncbi Borrelia turicatae 91E1350
BTRI382640 ncbi Bartonella tribocorum CIP 1054760
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54820
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)0
BQUI283165 ncbi Bartonella quintana Toulouse0
BPET94624 Bordetella petrii0
BPER257313 ncbi Bordetella pertussis Tohama I0
BPAR257311 ncbi Bordetella parapertussis 128220
BHER314723 ncbi Borrelia hermsii DAH0
BHEN283166 ncbi Bartonella henselae Houston-10
BGAR290434 ncbi Borrelia garinii PBi0
BFRA295405 ncbi Bacteroides fragilis YCH460
BFRA272559 ncbi Bacteroides fragilis NCTC 93430
BCIC186490 Candidatus Baumannia cicadellinicola0
BBUR224326 ncbi Borrelia burgdorferi B310
BBRO257310 ncbi Bordetella bronchiseptica RB500
BBAC360095 ncbi Bartonella bacilliformis KC5830
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1000
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)0
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP76114 ncbi Aromatoleum aromaticum EbN10
ASP62977 ncbi Acinetobacter sp. ADP10
ASP62928 ncbi Azoarcus sp. BH720
ASP232721 ncbi Acidovorax sp. JS420
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K10
AORE350688 ncbi Alkaliphilus oremlandii OhILAs0
ANAE240017 Actinomyces oris MG10
AMAR329726 ncbi Acaryochloris marina MBIC110170
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232700
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-10
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C0
ACEL351607 ncbi Acidothermus cellulolyticus 11B1
ABUT367737 ncbi Arcobacter butzleri RM40180
ABOR393595 ncbi Alcanivorax borkumensis SK20
ABAU360910 ncbi Bordetella avium 197N0
AAEO224324 ncbi Aquifex aeolicus VF50


Names of the homologs of the genes in the group in each of these orgs
  EG12520   EG12518   EG12439   EG11959   EG11958   EG10816   EG10815   EG10814   EG10059   EG10058   
ZMOB264203
XORY360094
XORY342109
XORY291331
XFAS405440
XFAS183190
XFAS160492
XCAM487884
XCAM316273
XCAM314565
XCAM190485
XAXO190486
XAUT78245
WSUC273121
WPIP955
WPIP80849
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496 TW0418
TWHI203267 TW329
TVOL273116
TTUR377629
TTHE300852
TTHE262724
TPEN368408
TPAL243276
TKOD69014
TFUS269800
TERY203124 TERY_0800
TELO197221
TDEN326298
TDEN292415
TDEN243275 TDE_2216
TCRU317025
TACI273075
SWOL335541 SWOL_0425
STRO369723
STOK273063
STHE322159
STHE299768
STHE264199
SSUI391296
SSUI391295
SSP84588
SSP64471
SSP387093
SSP321332
SSP321327
SSP1148
SSP1131
SSOL273057
SSED425104
SRUB309807
SPYO370554
SPYO370553
SPYO370552
SPYO370551
SPYO319701
SPYO293653
SPYO286636
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SPNE488221
SPNE487214
SPNE487213
SPNE171101
SPNE170187
SPNE1313
SONE211586
SMUT210007
SMAR399550
SLOI323850
SLAC55218
SGOR29390
SFUM335543
SEPI176280
SEPI176279
SELO269084
SDEN318161
SBAL402882
SBAL399599
SAUR93062
SAUR93061
SAUR426430
SAUR418127
SAUR367830
SAUR359787
SAUR359786
SAUR282459
SAUR282458
SAUR273036
SAUR196620
SAUR158879
SAUR158878
SARE391037
SALA317655
SACI56780
SACI330779
RTYP257363
RSPH349102
RSAL288705 RSAL33209_0263
RRIC452659
RRIC392021
RPRO272947
RPOM246200
RPAL316058
RPAL316057
RPAL316056
RPAL316055
RPAL258594
RMET266264
RMAS416276
RFEL315456
RCON272944
RCAN293613
RBEL391896
RBEL336407
RALB246199
RAKA293614
PTOR263820
PTHE370438
PSTU379731
PSP56811
PSP312153
PRUM264731
PPUT76869 PPUTGB1_3492
PPUT351746 PPUT_3236
PPUT160488 PP_2454
PPEN278197
PMEN399739
PMAR93060
PMAR74547
PMAR74546
PMAR59920
PMAR167555
PMAR167546
PMAR167542
PMAR167540
PMAR167539
PMAR146891
PLUT319225
PISL384616
PINT246198
PHOR70601
PHAL326442
PGIN242619
PFUR186497
PENT384676 PSEEN1952
PDIS435591
PCRY335284
PCAR338963
PATL342610
PAST100379
PARS340102
PARC259536
PAER208964 PA1946
PAER208963 PA14_39350
PAER178306
PABY272844
OTSU357244
OCAR504832
NWIN323098
NSP387092
NSP103690
NSEN222891
NPHA348780
NOCE323261
NMUL323848
NMEN374833
NMEN272831
NMEN122587
NMEN122586
NHAM323097
NGON242231
NFAR247156
NEUT335283
NEUR228410
NARO279238
MXAN246197
MVAN350058
MTUB419947
MTUB336982
MTHE349307
MTHE187420
MTBRV
MTBCDC
MSYN262723
MSTA339860
MSP409
MSED399549
MPUL272635
MPNE272634
MPET420662
MPEN272633
MMYC272632
MMOB267748
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR394221
MMAR368407
MMAR267377
MMAG342108
MLEP272631
MLAB410358
MKAN190192
MJAN243232
MHYO295358 MHP146
MHYO262722 MHP7448_0233
MHYO262719 MHJ_0226
MHUN323259
MGIL350054
MGEN243273
MFLO265311
MFLA265072
MEXT419610
MCAP340047
MCAP243233
MBUR259564
MBOV410289
MBOV233413
MBAR269797
MAVI243243
MART243272
MAQU351348
MAER449447
MAEO419665
MACE188937
MABS561007
LWEL386043
LSPH444177
LSAK314315
LREU557436
LPNE400673
LPNE297246
LPNE297245
LPNE272624
LPLA220668
LMON265669
LMON169963
LMES203120
LJOH257314
LINT363253
LINT267671
LINT189518
LINN272626
LHEL405566
LGAS324831
LDEL390333
LDEL321956
LBRE387344
LBOR355277
LBOR355276
LBIF456481
LBIF355278
JSP375286
ILOI283942
IHOS453591
HWAL362976
HSP64091
HSAL478009
HPYL85963
HPYL357544
HPY
HNEP81032
HMUK485914
HMAR272569
HHEP235279
HHAL349124
HDUC233412
HBUT415426
HARS204773
HACI382638
GURA351605
GSUL243231
GOXY290633
GMET269799
GFOR411154
GBET391165
FTUL458234
FTUL418136
FTUL401614
FTUL393115
FTUL393011
FTUL351581
FSUC59374
FSP1855 FRANEAN1_7032
FSP106370
FRANT
FPHI484022
FNOD381764
FMAG334413
FJOH376686
FALN326424
ERUM302409
ERUM254945
ELIT314225
EFAE226185
ECHA205920
ECAN269484
DVUL882
DSP255470
DSP216389
DRAD243230
DPSY177439
DOLE96561
DNOD246195
DHAF138119
DETH243164
DDES207559
DARO159087
CVES412965
CTRA471473
CTRA471472
CTEP194439
CSUL444179
CSP78
CSP501479 CSE45_3702
CRUT413404
CPSY167879
CPRO264201
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPEL335992
CMUR243161
CMET456442
CMAQ397948
CKOR374847
CKLU431943
CJEJ407148
CJEJ360109
CJEJ354242
CJEJ195099
CJEJ192222
CJEI306537
CHYD246194 CHY_1535
CHUT269798
CHOM360107
CFET360106
CFEL264202
CEFF196164
CDIP257309
CDES477974
CCUR360105
CCON360104
CCHL340177
CCAV227941
CBUR434922
CBUR360115
CBUR227377
CBOT536232
CBOT498213
CBOT441772
CBOT441771
CBOT441770
CBOT36826
CBLO291272
CBLO203907
CACE272562 CAC1351
CABO218497
BTUR314724
BTRI382640
BTHE226186
BSP107806
BQUI283165
BPET94624
BPER257313
BPAR257311
BHER314723
BHEN283166
BGAR290434
BFRA295405
BFRA272559
BCIC186490
BBUR224326
BBRO257310
BBAC360095
BBAC264462
BAPH372461
BAPH198804
BAFZ390236
AYEL322098
AURANTIMONAS
ASP76114
ASP62977
ASP62928
ASP232721
APHA212042
APER272557
AORE350688
ANAE240017
AMAR329726
AMAR234826
ALAI441768
AFUL224325
AFER243159
AEHR187272
ADEH290397
ACEL351607 ACEL_1049
ABUT367737
ABOR393595
ABAU360910
AAEO224324


Organism features enriched in list (features available for 384 out of the 410 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Pairs 0.000236958112
Disease:Gastroenteritis 0.0015831313
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 0.00963231111
Disease:Wide_range_of_infections 0.00963231111
Endospores:No 0.0000423160211
Endospores:Yes 5.128e-71853
GC_Content_Range4:0-40 7.022e-9171213
GC_Content_Range4:40-60 0.0005254130224
GC_Content_Range4:60-100 0.002072682145
GC_Content_Range7:30-40 4.802e-7134166
GC_Content_Range7:50-60 0.000021152107
GC_Content_Range7:60-70 0.008767478134
Genome_Size_Range5:0-2 5.045e-25149155
Genome_Size_Range5:2-4 0.0013404145197
Genome_Size_Range5:4-6 3.960e-1776184
Genome_Size_Range5:6-10 1.238e-71447
Genome_Size_Range9:0-1 9.183e-62727
Genome_Size_Range9:1-2 8.472e-19122128
Genome_Size_Range9:2-3 0.000381594120
Genome_Size_Range9:4-5 6.333e-74296
Genome_Size_Range9:5-6 9.240e-93488
Genome_Size_Range9:6-8 6.879e-61238
Genome_Size_Range9:8-10 0.008042629
Gram_Stain:Gram_Neg 0.0043969206333
Habitat:Aquatic 0.00249267191
Habitat:Host-associated 0.0013975151206
Habitat:Multiple 0.000109998178
Habitat:Specialized 0.00527424353
Habitat:Terrestrial 0.0000155931
Motility:No 0.0010894114151
Motility:Yes 0.0000232153267
Optimal_temp.:30-37 0.00462161718
Oxygen_Req:Anaerobic 0.002060579102
Oxygen_Req:Facultative 2.902e-7105201
Shape:Coccus 0.00035566782
Shape:Irregular_coccus 0.00073031717
Shape:Rod 2.365e-16184347
Shape:Sphere 0.00316881819
Shape:Spiral 7.797e-63334
Temp._range:Mesophilic 0.0029829300473



Back to top


ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 37
Effective number of orgs (counting one per cluster within 468 clusters): 31

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
LACI272621 ncbi Lactobacillus acidophilus NCFM 1.987e-668410
TMAR243274 ncbi Thermotoga maritima MSB8 0.000015984110
SAGA211110 ncbi Streptococcus agalactiae NEM316 0.000021386610
SAGA205921 ncbi Streptococcus agalactiae A909 0.000022387010
CTET212717 ncbi Clostridium tetani E88 0.0000923100210
CNOV386415 ncbi Clostridium novyi NT 0.0002131108910
BXEN266265 ncbi Burkholderia xenovorans LB400 0.0003144113210
TLET416591 ncbi Thermotoga lettingae TMO 0.00046227999
PMOB403833 ncbi Petrotoga mobilis SJ95 0.00047268019
CPER195102 ncbi Clostridium perfringens 13 0.0005507119710
TSP1755 Thermoanaerobacter sp. 0.0008304124710
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B 0.0008371124810
SAGA208435 ncbi Streptococcus agalactiae 2603V/R 0.00097358699
RXYL266117 ncbi Rubrobacter xylanophilus DSM 9941 0.0012320129710
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB4 0.0012904130310
CDIF272563 ncbi Clostridium difficile 630 0.0013722131110
LLAC272623 ncbi Lactococcus lactis lactis Il1403 0.00143589089
MTHE264732 ncbi Moorella thermoacetica ATCC 39073 0.0014922132210
CBOT515621 ncbi Clostridium botulinum Ba4 str. 657 0.0016338133410
CGLU196627 ncbi Corynebacterium glutamicum ATCC 13032 0.00198739429
LCAS321967 ncbi Lactobacillus casei ATCC 334 0.00216149519
SERY405948 ncbi Saccharopolyspora erythraea NRRL 2338 0.0038503145310
SAVE227882 ncbi Streptomyces avermitilis MA-4680 0.0044767147510
RSP101510 ncbi Rhodococcus jostii RHA1 0.0046945148210
OIHE221109 ncbi Oceanobacillus iheyensis HTE831 0.0052634149910
HINF374930 ncbi Haemophilus influenzae PittEE 0.0053343150110
BMEL359391 ncbi Brucella melitensis biovar Abortus 2308 0.0060516152010
BABO262698 ncbi Brucella abortus bv. 1 str. 9-941 0.0060916152110
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 15305 0.008241111079
HSOM228400 ncbi Haemophilus somnus 2336 0.0082659156810
BCAN483179 ncbi Brucella canis ATCC 23365 0.0083722157010
BSUI204722 ncbi Brucella suis 1330 0.0086987157610
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M 0.0087542157710
HINF281310 ncbi Haemophilus influenzae 86-028NP 0.0088662157910
BCER315749 ncbi Bacillus cytotoxicus NVH 391-98 0.0090940158310
BHAL272558 ncbi Bacillus halodurans C-125 0.0095055159010
BPUM315750 ncbi Bacillus pumilus SAFR-032 0.0099961159810


Names of the homologs of the genes in the group in each of these orgs
  EG12520   EG12518   EG12439   EG11959   EG11958   EG10816   EG10815   EG10814   EG10059   EG10058   
LACI272621 LBA1482LBA1483LBA1482LBA1483LBA1482LBA1482LBA1481LBA1483LBA1482LBA1483
TMAR243274 TM_0955TM_0956TM_0955TM_0115TM_0955TM_0955TM_0958TM_0956TM_0112TM_0956
SAGA211110 GBS0114GBS0115GBS0114GBS0115GBS0114GBS0114GBS0113GBS0115GBS0114GBS0115
SAGA205921 SAK_0167SAK_0168SAK_0167SAK_0168SAK_0167SAK_0167SAK_0166SAK_0168SAK_0167SAK_0168
CTET212717 CTC_02349CTC_02350CTC_02349CTC_00905CTC_02349CTC_02349CTC_02347CTC_02350CTC_02349CTC_02350
CNOV386415 NT01CX_0163NT01CX_0164NT01CX_0163NT01CX_0164NT01CX_0163NT01CX_0163NT01CX_0162NT01CX_0164NT01CX_0163NT01CX_0164
BXEN266265 BXE_B1397BXE_C1350BXE_B1397BXE_C1350BXE_B1397BXE_C1349BXE_B0894BXE_C1350BXE_B1397BXE_C1350
TLET416591 TLET_1328TLET_0184TLET_0390TLET_0185TLET_1328TLET_1325TLET_1327TLET_0358TLET_1327
PMOB403833 PMOB_0922PMOB_1601PMOB_0922PMOB_1601PMOB_1602PMOB_0922PMOB_0923PMOB_0922PMOB_1601
CPER195102 CPE1629CPE1342CPE1629CPE1630CPE1629CPE1629CPE1628CPE1630CPE1629CPE1630
TSP1755 TETH514_0165TETH514_0164TETH514_0165TETH514_0164TETH514_0165TETH514_0165TETH514_0166TETH514_0164TETH514_0990TETH514_0164
CBOT508765 CLL_A1530CLL_A1529CLL_A1530CLL_A1529CLL_A1530CLL_A1530CLL_A1531CLL_A1529CLL_A1530CLL_A1529
SAGA208435 SAG_0115SAG_0115SAG_0116SAG_0115SAG_0115SAG_0114SAG_0116SAG_0115SAG_0116
RXYL266117 RXYL_3002RXYL_0946RXYL_3002RXYL_3003RXYL_3002RXYL_0947RXYL_0948RXYL_0946RXYL_3002RXYL_0946
TTEN273068 TTE0205TTE0204TTE0205TTE0763TTE0764TTE0205TTE0206TTE0204TTE0764TTE0204
CDIF272563 CD0302CD0301CD0302CD0301CD1588CD0302CD0300CD0301CD0302CD0301
LLAC272623 L83296L83296L84240L83296L83296L82310L84240L83296L84240
MTHE264732 MOTH_0614MOTH_0613MOTH_0614MOTH_0613MOTH_0614MOTH_0614MOTH_0612MOTH_0613MOTH_0614MOTH_0613
CBOT515621 CLJ_B1313CLJ_B1312CLJ_B1313CLJ_B1312CLJ_B1313CLJ_B1313CLJ_B1315CLJ_B1312CLJ_B1313CLJ_B1312
CGLU196627 CG1412CG1411CG1412CG1411CG1412CG1412CG1413CG1412CG1411
LCAS321967 LSEI_0309LSEI_0308LSEI_0309LSEI_0308LSEI_0309LSEI_0309LSEI_0310LSEI_0308LSEI_0309
SERY405948 SACE_2988SACE_5659SACE_5660SACE_5659SACE_1882SACE_5660SACE_5660SACE_5659SACE_5660SACE_2987
SAVE227882 SAV1827SAV970SAV968SAV7416SAV5318SAV5318SAV5318SAV7416SAV968SAV5319
RSP101510 RHA1_RO00821RHA1_RO08205RHA1_RO00821RHA1_RO04085RHA1_RO00821RHA1_RO00821RHA1_RO00819RHA1_RO04085RHA1_RO00821RHA1_RO04085
OIHE221109 OB2573OB2574OB2573OB2574OB2573OB2573OB2572OB2574OB2573OB2574
HINF374930 CGSHIEE_00475CGSHIEE_00480CGSHIEE_00475CGSHIEE_07945CGSHIEE_00475CGSHIEE_00475CGSHIEE_00470CGSHIEE_00480CGSHIEE_00475CGSHIEE_00480
BMEL359391 BAB1_1649BAB2_0299BAB1_1649BAB2_0299BAB1_1649BAB1_1649BAB2_0377BAB2_1110BAB1_1649BAB2_1110
BABO262698 BRUAB1_1619BRUAB2_0297BRUAB1_1619BRUAB2_0297BRUAB1_1619BRUAB1_1619BRUAB2_0373BRUAB2_1088BRUAB1_1619BRUAB2_1088
SSAP342451 SSP1393SSP1394SSP1393SSP1394SSP1393SSP1393SSP1392SSP1394SSP1393
HSOM228400 HSM_0822HSM_0431HSM_0432HSM_0557HSM_0558HSM_0091HSM_0092HSM_0090HSM_0091HSM_0823
BCAN483179 BCAN_A1668BCAN_B0956BCAN_A1668BCAN_B0956BCAN_A1668BCAN_A1668BCAN_B0875BCAN_A1669BCAN_A1668BCAN_B1180
BSUI204722 BR_1631BR_A0936BR_1631BR_A0936BR_1631BR_1631BR_A0858BR_1632BR_1631BR_A1151
BMEL224914 BMEI0392BMEII0361BMEI0392BMEII0361BMEI0392BMEI0392BMEII0435BMEII0145BMEI0392BMEII0145
HINF281310 NTHI0631NTHI0630NTHI0631NTHI0630NTHI0631NTHI0631NTHI0632NTHI0630NTHI0631NTHI0630
BCER315749 BCER98_0563BCER98_0562BCER98_0563BCER98_0562BCER98_0563BCER98_0563BCER98_0564BCER98_0562BCER98_0563BCER98_0562
BHAL272558 BH2321BH3730BH3731BH3730BH3731BH3731BH3732BH3730BH3731BH2322
BPUM315750 BPUM_3267BPUM_3266BPUM_3267BPUM_3266BPUM_3267BPUM_3267BPUM_3268BPUM_3266BPUM_3267BPUM_3266


Organism features enriched in list (features available for 36 out of the 37 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00034011492
Arrangment:Groups 0.003713522
Disease:Brucellosis 0.000058445
Disease:and_meningitis 0.003713522
Disease:septicemia 0.000819834
Endospores:Yes 0.00001871253
GC_Content_Range4:0-40 0.007852720213
GC_Content_Range7:60-70 0.00384672134
Genome_Size_Range5:2-4 0.000025724197
Genome_Size_Range5:4-6 0.00255094184
Genome_Size_Range9:3-4 0.00289641177
Genome_Size_Range9:8-10 0.001171249
Gram_Stain:Gram_Neg 0.004643813333
Gram_Stain:Gram_Pos 3.046e-622150
Optimal_temp.:- 0.00781279257



Back to top


ORGANISMS DEPLETED FOR GROUP:




Back to top


PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
GALACTITOLCAT-PWY (galactitol degradation)73650.5432
GLUTAMINDEG-PWY (glutamine degradation I)1911110.5148
PWY-6196 (serine racemization)102740.4906
PWY-6374 (vibriobactin biosynthesis)77610.4745
RIBOKIN-PWY (ribose degradation)2791320.4717
XYLCAT-PWY (xylose degradation I)2171130.4636
TREDEGLOW-PWY (trehalose degradation I (low osmolarity))121790.4617
GLUTDEG-PWY (glutamate degradation II)1941030.4423
GLUCUROCAT-PWY (β-D-glucuronide and D-glucuronate degradation)2081060.4307
GLUAMCAT-PWY (N-acetylglucosamine degradation I)3561420.4060
PWY-5861 (superpathway of demethylmenaquinone-8 biosynthesis)50420.4059
GLUCARDEG-PWY (D-glucarate degradation I)152840.4022
GALACTCAT-PWY (D-galactonate degradation)104660.4020



Back to top


PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG12518   EG12439   EG11959   EG11958   EG10816   EG10815   EG10814   EG10059   EG10058   
EG125200.9997580.9998260.9994480.9996960.9996560.9996340.9995290.9995170.9994
EG125180.9997150.9995720.9996110.9996170.9995330.9996220.9994550.999562
EG124390.9993540.9996320.9996270.9996250.9994780.9995640.999331
EG119590.999590.9995530.9994360.9996740.999370.999456
EG119580.9997910.9996860.9996370.9995770.999441
EG108160.9997490.9997110.9995250.999484
EG108150.9995660.9994760.999334
EG108140.9994990.99963
EG100590.999693
EG10058



Back to top


PAIRWISE BLAST SCORES:

  EG12520   EG12518   EG12439   EG11959   EG11958   EG10816   EG10815   EG10814   EG10059   EG10058   
EG125200.0f0----4.3e-27----
EG12518-0.0f0-----2.9e-60-2.5e-8
EG12439--0.0f0--1.7e-30----
EG11959---0.0f0---4.0e-95--
EG11958----0.0f06.9e-43----
EG10816-----0.0f0----
EG10815------0.0f0---
EG10814-------0.0f0-7.1e-105
EG10059----1.3e-132.0e-15--0.0f0-
EG10058-------7.1e-105-0.0f0



Back to top


PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- ABC-42-CPLX (D-allose ABC transporter) (degree of match pw to cand: 0.667, degree of match cand to pw: 0.200, average score: 0.993)
  Genes in pathway or complex:
             0.7603 0.1361 EG12458 (alsB) YJCX-MONOMER (AlsB)
   *in cand* 0.9997 0.9994 EG11958 (alsC) YJCV-MONOMER (AlsC)
   *in cand* 0.9995 0.9994 EG11959 (alsA) YJCW-MONOMER (AlsA)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9995 0.9993 EG10058 (araG) ARAG-MONOMER (AraG)
   *in cand* 0.9996 0.9994 EG10059 (araH) ARAH-MONOMER (high-affinity L-arabinose transport protein (ABC superfamily, membrane))
   *in cand* 0.9996 0.9995 EG10814 (rbsA) RBSA-MONOMER (RbsA)
   *in cand* 0.9996 0.9993 EG10815 (rbsB) RBSB-MONOMER (RbsB)
   *in cand* 0.9997 0.9995 EG10816 (rbsC) RBSC-MONOMER (RbsC)
   *in cand* 0.9996 0.9993 EG12439 (yjfF) YJFF-MONOMER (YjfF)
   *in cand* 0.9996 0.9995 EG12518 (ytfR) YTFR-MONOMER (YtfR)
   *in cand* 0.9996 0.9994 EG12520 (ytfT) YTFT-MONOMER (YtfT)

- ABC-2-CPLX (arabinose ABC transporter) (degree of match pw to cand: 0.667, degree of match cand to pw: 0.200, average score: 1.000)
  Genes in pathway or complex:
             0.9980 0.9958 EG10057 (araF) ARAF-MONOMER (AraF)
   *in cand* 0.9996 0.9994 EG10059 (araH) ARAH-MONOMER (high-affinity L-arabinose transport protein (ABC superfamily, membrane))
   *in cand* 0.9995 0.9993 EG10058 (araG) ARAG-MONOMER (AraG)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9996 0.9995 EG10814 (rbsA) RBSA-MONOMER (RbsA)
   *in cand* 0.9996 0.9993 EG10815 (rbsB) RBSB-MONOMER (RbsB)
   *in cand* 0.9997 0.9995 EG10816 (rbsC) RBSC-MONOMER (RbsC)
   *in cand* 0.9997 0.9994 EG11958 (alsC) YJCV-MONOMER (AlsC)
   *in cand* 0.9995 0.9994 EG11959 (alsA) YJCW-MONOMER (AlsA)
   *in cand* 0.9996 0.9993 EG12439 (yjfF) YJFF-MONOMER (YjfF)
   *in cand* 0.9996 0.9995 EG12518 (ytfR) YTFR-MONOMER (YtfR)
   *in cand* 0.9996 0.9994 EG12520 (ytfT) YTFT-MONOMER (YtfT)

- ABC-28-CPLX (ribose ABC transporter) (degree of match pw to cand: 1.000, degree of match cand to pw: 0.300, average score: 1.000)
  Genes in pathway or complex:
   *in cand* 0.9996 0.9993 EG10815 (rbsB) RBSB-MONOMER (RbsB)
   *in cand* 0.9997 0.9995 EG10816 (rbsC) RBSC-MONOMER (RbsC)
   *in cand* 0.9996 0.9995 EG10814 (rbsA) RBSA-MONOMER (RbsA)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9995 0.9993 EG10058 (araG) ARAG-MONOMER (AraG)
   *in cand* 0.9996 0.9994 EG10059 (araH) ARAH-MONOMER (high-affinity L-arabinose transport protein (ABC superfamily, membrane))
   *in cand* 0.9997 0.9994 EG11958 (alsC) YJCV-MONOMER (AlsC)
   *in cand* 0.9995 0.9994 EG11959 (alsA) YJCW-MONOMER (AlsA)
   *in cand* 0.9996 0.9993 EG12439 (yjfF) YJFF-MONOMER (YjfF)
   *in cand* 0.9996 0.9995 EG12518 (ytfR) YTFR-MONOMER (YtfR)
   *in cand* 0.9996 0.9994 EG12520 (ytfT) YTFT-MONOMER (YtfT)

- ABC-46-CPLX (galactose ABC transporter) (degree of match pw to cand: 0.750, degree of match cand to pw: 0.300, average score: 1.000)
  Genes in pathway or complex:
             0.9996 0.9993 EG12517 (ytfQ) YTFQ-MONOMER (YtfQ)
   *in cand* 0.9996 0.9994 EG12520 (ytfT) YTFT-MONOMER (YtfT)
   *in cand* 0.9996 0.9995 EG12518 (ytfR) YTFR-MONOMER (YtfR)
   *in cand* 0.9996 0.9993 EG12439 (yjfF) YJFF-MONOMER (YjfF)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9995 0.9993 EG10058 (araG) ARAG-MONOMER (AraG)
   *in cand* 0.9996 0.9994 EG10059 (araH) ARAH-MONOMER (high-affinity L-arabinose transport protein (ABC superfamily, membrane))
   *in cand* 0.9996 0.9995 EG10814 (rbsA) RBSA-MONOMER (RbsA)
   *in cand* 0.9996 0.9993 EG10815 (rbsB) RBSB-MONOMER (RbsB)
   *in cand* 0.9997 0.9995 EG10816 (rbsC) RBSC-MONOMER (RbsC)
   *in cand* 0.9997 0.9994 EG11958 (alsC) YJCV-MONOMER (AlsC)
   *in cand* 0.9995 0.9994 EG11959 (alsA) YJCW-MONOMER (AlsA)



Back to top


GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG12439 EG12518 EG12520 (centered at EG12520)
EG10058 EG10059 (centered at EG10058)
EG11958 EG11959 (centered at EG11959)
EG10814 EG10815 EG10816 (centered at EG10816)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  EG12520   EG12518   EG12439   EG11959   EG11958   EG10816   EG10815   EG10814   EG10059   EG10058   
192/623202/623191/623183/623194/623177/623193/623176/623182/623176/623
AAUR290340:2:Tyes01505181-0517515-01505
AAVE397945:0:Tyes120---1909---
ABAC204669:0:Tyes-1--0--1-1
ACAU438753:0:Tyes10-01-3--0
ACEL351607:0:Tyes--------0-
ACRY349163:8:Tyes173517361734-0560559-1734-
AHYD196024:0:Tyes40039940039940040040139910
AMET293826:0:Tyes01283267128129129-23061292306
APLE416269:0:Tyes2722712720272272273271272271
APLE434271:0:Tno2722712720272272273271272271
ASAL382245:5:Tyes1861186218600169916991698211021092110
ASP1667:3:Tyes0810-00--87-
AVAR240292:3:Tyes21212201-1
BABO262698:0:Tno-0-0--75744-744
BABO262698:1:Tno0-0-00--0-
BAMB339670:1:Tno102-------
BAMB339670:2:Tno---246002246--
BAMB339670:3:Tno--------10
BAMB398577:1:Tno102-------
BAMB398577:2:Tno---238002---
BAMB398577:3:Tno-------80410
BAMY326423:0:Tyes1010112010
BANT260799:0:Tno1010112010
BANT261594:2:Tno1010112010
BANT568206:2:Tyes1212110212
BANT592021:2:Tno1010112010
BCAN483179:0:Tno-77-77--0--292
BCAN483179:1:Tno0-0-00-10-
BCEN331271:0:Tno120-------
BCEN331271:1:Tno---0221221219---
BCEN331271:2:Tno-------81910
BCEN331272:1:Tyes120-------
BCEN331272:2:Tyes---221002---
BCEN331272:3:Tyes-------80210
BCER226900:1:Tyes101011-010
BCER288681:0:Tno1010112010
BCER315749:1:Tyes1010112010
BCER405917:1:Tyes1010112010
BCER572264:1:Tno1010112010
BCLA66692:0:Tyes3173317403174317331733172317431733174
BHAL272558:0:Tyes0142414251424142514251426142414251
BJAP224911:0:Fyes2094209320951159156802092-04697
BLIC279010:0:Tyes3300329903299330033003301329933003299
BLON206672:0:Tyes102-----1-
BMAL243160:1:Tno01-1002114911481149
BMAL320388:1:Tno12121213-1213121212121214101
BMAL320389:1:Tyes21-1220239423952394
BMEL224914:0:Tno-227-227--3020-0
BMEL224914:1:Tno0-0-00--0-
BMEL359391:0:Tno-0-0--75740-740
BMEL359391:1:Tno0-0-00--0-
BOVI236:0:Tyes-0-0------
BOVI236:1:Tyes0-0-00-10-
BPSE272560:0:Tyes0-1151---1--
BPSE272560:1:Tyes-1198--002-11971198
BPSE320372:0:Tno0-1561---1--
BPSE320372:1:Tno-1--220-14251426
BPSE320373:0:Tno169-1690---0--
BPSE320373:1:Tno-1--220-14791480
BPUM315750:0:Tyes1010112010
BSP36773:1:Tyes-1746-0263263261---
BSP36773:2:Tyes994-994----88010
BSP376:0:Tyes394393395040439439209070
BSUB:0:Tyes1010112010
BSUI204722:0:Tyes-77-77--0--279
BSUI204722:1:Tyes0-0-00-10-
BSUI470137:0:Tno-77-77--0---
BSUI470137:1:Tno0-0-00-10-
BTHA271848:0:Tno-------0--
BTHA271848:1:Tno1140113911411230122912291231-10
BTHU281309:1:Tno1010112010
BTHU412694:1:Tno1010112010
BVIE269482:5:Tyes120-------
BVIE269482:6:Tyes-----0----
BVIE269482:7:Tyes---788905-95678810
BWEI315730:4:Tyes1010112010
BXEN266265:0:Tyes-1-1-0-1-1
BXEN266265:1:Tyes0-0-0-493-0-
CACE272562:1:Tyes------0---
CAULO:0:Tyes-121220--1
CBEI290402:0:Tyes272826532--29532-0
CBOT508765:1:Tyes1010112010
CBOT515621:2:Tyes1010113010
CDIF272563:1:Tyes2121132120121
CGLU196627:0:Tyes1010112-10
CHYD246194:0:Tyes-0--------
CJAP155077:0:Tyes102-------
CMIC31964:2:Tyes-01-------
CMIC443906:2:Tyes120-------
CNOV386415:0:Tyes1212110212
CPER195102:1:Tyes2880288289288288287289288289
CPER195103:0:Tno3220322323322322-323322323
CPER289380:3:Tyes-0-253--251253252253
CPHY357809:0:Tyes-121248680--86821242125
CSAL290398:0:Tyes06810-001-682681
CSP501479:7:Fyes-0--------
CTET212717:0:Tyes1326132713260132613261325132713261327
CVIO243365:0:Tyes1212110212
DGEO319795:0:Tyes-02790-279-0-0
DRED349161:0:Tyes1-1-11021-
DSHI398580:5:Tyes-2-21--20-
ECAR218491:0:Tyes4291429242900147712022832284
ECOL199310:0:Tno2970296929712740273923322333233101
ECOL316407:0:Tno2309230823102165216416051604160601
ECOL331111:6:Tno255425532555299205420542055205301
ECOL362663:0:Tno2632263126332482151318372113211201
ECOL364106:1:Tno2716271527172564219621962197219501
ECOL405955:2:Tyes2588258725892382238120132014201201
ECOL409438:6:Tyes2476247524772322232119491950194801
ECOL413997:0:Tno2277227622782135213417891790178801
ECOL439855:4:Tno3312331133133162316127592760275810
ECOL469008:0:Tno2034203520332176217725342533253510
ECOL481805:0:Tno2044204520432202220325312530253210
ECOL585034:0:Tno242424232425248192519251926192401
ECOL585035:0:Tno2757275627582539215221522153215101
ECOL585055:0:Tno265526542656317210721072108210601
ECOL585056:2:Tno256425632565298208420842085208301
ECOL585057:0:Tno3539353815703357335631903191318910
ECOL585397:0:Tno2850284928502610260922292230222801
ECOL83334:0:Tno268526842686446254621372138213601
ECOLI:0:Tno2366236523672221222018811882188001
ECOO157:0:Tno262126202622412247721152116211402
EFER585054:1:Tyes3147314631483123312428982899289710
ESP42895:1:Tyes1291281301038683867386922012202
FNUC190304:0:Tyes---0---0--
FSP1855:0:Tyes------0---
GKAU235909:1:Tyes0136013591360135913591358136013591360
GTHE420246:1:Tyes1342134301343134213421341134313421343
GVIO251221:0:Tyes936-936-9369360-936-
HAUR316274:2:Tyes120-1551-87---
HCHE349521:0:Tyes1253125212530125312531251012530
HINF281310:0:Tyes1010112010
HINF374930:0:Tyes1211310110212
HINF71421:0:Tno101318112010
HMOD498761:0:Tyes10--11201-
HSOM205914:1:Tyes9889899881820183181-988-
HSOM228400:0:Tno7433443454764771201744
JSP290400:1:Tyes-501-501502-50005050
KPNE272620:2:Tyes2361236023623275190219021903190101
KRAD266940:2:Fyes030790-0---03079
LACI272621:0:Tyes1212110212
LCAS321967:1:Tyes101011201-
LCHO395495:0:Tyes11096-1096981109501096-1096
LLAC272622:5:Tyes-1-1--01-1
LLAC272623:0:Tyes1-12110212
LXYL281090:0:Tyes-12---0---
MHYO262719:0:Tyes--0-------
MHYO262722:0:Tno--0-------
MHYO295358:0:Tno--0-------
MLOT266835:2:Tyes528220045282365887247530200412004
MSME246196:0:Tyes120-244524451377-1371-
MSP164756:1:Tno23--2-0---
MSP164757:0:Tno23--2-0--3
MSP189918:2:Tyes23--2-0---
MSP266779:3:Tyes21020210221012102-2100-21022101
MSP400668:0:Tyes1573157415720114811150-10
MSUC221988:0:Tyes142116026041421421604101
MTHE264732:0:Tyes2121220121
NSP35761:1:Tyes-3240312-0---724-
OANT439375:4:Tyes----12521252-536-0
OANT439375:5:Tyes1148114911471--2-0-
OIHE221109:0:Tyes1212110212
PACN267747:0:Tyes101-112-1-
PAER208963:0:Tyes------0---
PAER208964:0:Tno------0---
PENT384676:0:Tyes------0---
PFLU205922:0:Tyes-385-12231-0223222312232
PFLU216595:1:Tyes113741109523137313731375020312032
PFLU220664:0:Tyes492491-4914924920491-491
PING357804:0:Tyes2311231210112012312
PLUM243265:0:Fyes1010112010
PMOB403833:0:Tyes0658065865901-0658
PMUL272843:1:Tyes1225212251173110211226
PNAP365044:8:Tyes2---2-0---
PPRO298386:1:Tyes1084010841397108410841085108310840
PPUT160488:0:Tno------0---
PPUT351746:0:Tyes------0---
PPUT76869:0:Tno------0---
PSP117:0:Tyes33337-23302-2
PSP296591:2:Tyes1---1-0---
PSYR205918:0:Tyes4181112418111241841801112219218
PSYR223283:2:Tyes11069110691068106801069238237
RCAS383372:0:Tyes-1770----0---
RDEN375451:4:Tyes-343024252424--2425--
RETL347834:0:Tyes---0------
RETL347834:4:Tyes-----0----
RETL347834:5:Tyes146514641466-592-0334330523053
REUT264198:2:Tyes--1---3-10
REUT264198:3:Tyes01-100-1--
REUT381666:1:Tyes101011-010
RFER338969:1:Tyes0269002690026911464269002690
RLEG216596:6:Tyes63263163370300972290124792480
RRUB269796:1:Tyes0-0-00--11111
RSAL288705:0:Tyes--0-------
RSOL267608:1:Tyes240239-239-240023917781779
RSP101510:2:Fyes-0--------
RSP101510:3:Fyes2-23253220325323253
RSP357808:0:Tyes-0-0--17410--
RSPH272943:3:Tyes0-0-------
RSPH349101:1:Tno0-0-------
RXYL266117:0:Tyes2047020472048204712020470
SAGA205921:0:Tno1212110212
SAGA208435:0:Tno1-12110212
SAGA211110:0:Tyes1212110212
SAVE227882:1:Fyes864206536441444144414653604415
SBOY300268:1:Tyes2950191329491016252625262951234810
SCO:2:Fyes41983483490349349349348-348
SDEG203122:0:Tyes102-----1-
SDYS300267:1:Tyes2917291629182806268526852808010
SENT209261:0:Tno1212110212
SENT220341:0:Tno1212110212
SENT295319:0:Tno-0-0--10-0
SENT321314:2:Tno1010112010
SENT454169:2:Tno1010112010
SERY405948:0:Tyes1077366336643663036643664366336641076
SFLE198214:0:Tyes22622263226127118271827-27101
SFLE373384:0:Tno22092210220826317201720-193701
SGLO343509:3:Tyes03591830359001359-359
SHAE279808:0:Tyes1-1011201-
SHAL458817:0:Tyes1484-11483112010
SHIGELLA:0:Tno22182219167626016761676-26001
SMED366394:1:Tyes----0-----
SMED366394:2:Tyes1278127712791150-1651122-10
SMED366394:3:Tyes-------0--
SMEL266834:1:Tyes691690692616-0583-150151
SMEL266834:2:Tyes----0--623--
SPEA398579:0:Tno1839011840112010
SPRO399741:1:Tyes3783378437820392639263925392712381237
SSAP342451:2:Tyes121211021-
SSON300269:1:Tyes302130203022936256825683019256710
SSP292414:1:Tyes----0---15-
SSP292414:2:Tyes---0------
SSP644076:4:Fyes3232330-3-
SSP94122:1:Tyes213---0---
STHE292459:0:Tyes---15971596-0159715961597
STYP99287:1:Tyes1010112010
SWOL335541:0:Tyes--------0-
TDEN243275:0:Tyes---0------
TERY203124:0:Tyes-0--------
TLET416591:0:Tyes11560206-11156115311551741155
TMAR243274:0:Tyes82582682538258258288260826
TPET390874:0:Tno9860-098698698703-
TPSE340099:0:Tyes12121102-2
TROS309801:0:Tyes-0-0180--0-0
TSP1755:0:Tyes101011208080
TSP28240:0:Tyes-138137138137137-1380138
TTEN273068:0:Tyes1015305311205310
TWHI203267:0:Tyes--0-------
TWHI218496:0:Tno--0-------
VCHO:0:Tyes---0------
VCHO:1:Fyes101-112010
VCHO345073:0:Tno121-110212
VCHO345073:1:Tno---0------
VEIS391735:1:Tyes942924158309429421578026602661
VFIS312309:2:Tyes1010112010
VPAR223926:0:Tyes1589121102588589
VVUL196600:1:Tyes4164154160416416417415416415
VVUL216895:0:Tno1010112010
YENT393305:1:Tyes1431421442714112019471946
YPES187410:5:Tno102305235771385138323531790841
YPES214092:3:Tno285428552853029131490149253912491248
YPES349746:2:Tno3043033050382915461548277220351660
YPES360102:3:Tyes10219537371912191470515332447
YPES377628:2:Tno1023160362420732075245917041703
YPES386656:2:Tno297229732971027781356135790612120
YPSE273123:2:Tno1023149371524442446143320882087
YPSE349747:2:Tno102654383713441342229417172793



Back to top