CANDIDATE ID: 50

CANDIDATE ID: 50

NUMBER OF GENES: 9
AVERAGE SCORE:    9.9965894e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7665 (lptA) (b3200)
   Products of gene:
     - YHBN-MONOMER (LptA)
     - ABC-53-CPLX (LptABCFG ABC transporter)

- G7663 (kdsC) (b3198)
   Products of gene:
     - G7663-MONOMER (3-deoxy-D-manno-octulosonate 8-phosphate phosphatase monomer)
     - KDO-8PPHOSPHAT-CPLX (3-deoxy-D-manno-octulosonate 8-phosphate phosphatase)
       Reactions:
        3-deoxy-D-manno-octulosonate 8-P + H2O  ->  3-deoxy-D-manno-octulosonate + phosphate
         In pathways
         LPSSYN-PWY (superpathway of lipopolysaccharide biosynthesis)
         KDO-NAGLIPASYN-PWY (superpathway of KDO2-lipid A biosynthesis)
         PWY-5111 (PWY-5111)
         PWY-1269 (CMP-KDO biosynthesis I)

- G7662 (kdsD) (b3197)
   Products of gene:
     - G7662-MONOMER (D-arabinose 5-phosphate isomerase)
     - CPLX0-1262 (D-arabinose 5-phosphate isomerase)
       Reactions:
        D-arabinose 5-phosphate  =  D-ribulose-5-phosphate
         In pathways
         LPSSYN-PWY (superpathway of lipopolysaccharide biosynthesis)
         KDO-NAGLIPASYN-PWY (superpathway of KDO2-lipid A biosynthesis)
         PWY-1269 (CMP-KDO biosynthesis I)

- EG12147 (npr) (b3206)
   Products of gene:
     - EG12147-MONOMER (phosphocarrier protein HPr-like NPr, nitrogen related, exchanges phosphate with Enzyme I, Hpr)

- EG12146 (yhbJ) (b3205)
   Products of gene:
     - EG12146-MONOMER (predicted P-loop containing ATPase)

- EG11682 (ptsN) (b3204)
   Products of gene:
     - EG11682-MONOMER (phosphotransferase system enzyme IIA, regulates N metabolism)

- EG11681 (hpf) (b3203)
   Products of gene:
     - EG11681-MONOMER (predicted ribosome-associated, sigma 54 modulation protein)

- EG11680 (lptB) (b3201)
   Products of gene:
     - YHBG-MONOMER (LptB)
     - ABC-53-CPLX (LptABCFG ABC transporter)

- EG10898 (rpoN) (b3202)
   Products of gene:
     - RPON-MONOMER (RNA polymerase, sigma 54 (sigma N) factor)
     - RNAP54-CPLX (RNA polymerase sigma 54)



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ORGANISMS CONTAINING AT LEAST 8 GENES FROM THE GROUP:

Total number of orgs: 160
Effective number of orgs (counting one per cluster within 468 clusters): 104

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317589
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329539
YPES386656 ncbi Yersinia pestis Pestoides F9
YPES377628 ncbi Yersinia pestis Nepal5169
YPES360102 ncbi Yersinia pestis Antiqua9
YPES349746 ncbi Yersinia pestis Angola9
YPES214092 ncbi Yersinia pestis CO929
YPES187410 ncbi Yersinia pestis KIM 109
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80819
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A9
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110189
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103319
XFAS405440 ncbi Xylella fastidiosa M128
XFAS183190 ncbi Xylella fastidiosa Temecula18
XFAS160492 ncbi Xylella fastidiosa 9a5c8
XCAM487884 Xanthomonas campestris pv. paulliniae9
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-109
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80049
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339139
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3069
VVUL216895 ncbi Vibrio vulnificus CMCP69
VVUL196600 ncbi Vibrio vulnificus YJ0169
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106338
VFIS312309 ncbi Vibrio fischeri ES1149
VEIS391735 ncbi Verminephrobacter eiseniae EF01-29
VCHO345073 ncbi Vibrio cholerae O3959
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169619
TTUR377629 ncbi Teredinibacter turnerae T79019
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252599
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT29
SSP94122 ncbi Shewanella sp. ANA-39
SSON300269 ncbi Shigella sonnei Ss0469
SSED425104 ncbi Shewanella sediminis HAW-EB39
SPRO399741 ncbi Serratia proteamaculans 5689
SPEA398579 ncbi Shewanella pealeana ATCC 7003458
SONE211586 ncbi Shewanella oneidensis MR-19
SLOI323850 ncbi Shewanella loihica PV-49
SHIGELLA ncbi Shigella flexneri 2a str. 2457T9
SHAL458817 ncbi Shewanella halifaxensis HAW-EB49
SGLO343509 ncbi Sodalis glossinidius morsitans9
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB8
SFLE373384 ncbi Shigella flexneri 5 str. 84019
SFLE198214 ncbi Shigella flexneri 2a str. 3019
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4769
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B679
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91509
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT189
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty29
SDYS300267 ncbi Shigella dysenteriae Sd1979
SDEN318161 ncbi Shewanella denitrificans OS2179
SDEG203122 ncbi Saccharophagus degradans 2-409
SBOY300268 ncbi Shigella boydii Sb2279
SBAL402882 ncbi Shewanella baltica OS1859
SBAL399599 ncbi Shewanella baltica OS1959
SACI56780 ncbi Syntrophus aciditrophicus SB9
RSOL267608 ncbi Ralstonia solanacearum GMI10009
RMET266264 ncbi Ralstonia metallidurans CH348
RFER338969 ncbi Rhodoferax ferrireducens T1188
REUT381666 ncbi Ralstonia eutropha H168
REUT264198 ncbi Ralstonia eutropha JMP1348
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30009
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a9
PSTU379731 ncbi Pseudomonas stutzeri A15019
PSP296591 ncbi Polaromonas sp. JS6669
PPUT76869 ncbi Pseudomonas putida GB-19
PPUT351746 ncbi Pseudomonas putida F19
PPUT160488 ncbi Pseudomonas putida KT24409
PPRO298386 ncbi Photobacterium profundum SS99
PNAP365044 ncbi Polaromonas naphthalenivorans CJ29
PMEN399739 ncbi Pseudomonas mendocina ymp9
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO19
PING357804 ncbi Psychromonas ingrahamii 379
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1259
PFLU220664 ncbi Pseudomonas fluorescens Pf-59
PFLU216595 ncbi Pseudomonas fluorescens SBW259
PFLU205922 ncbi Pseudomonas fluorescens Pf0-19
PENT384676 ncbi Pseudomonas entomophila L489
PCAR338963 ncbi Pelobacter carbinolicus DSM 23809
PATL342610 ncbi Pseudoalteromonas atlantica T6c9
PAER208964 ncbi Pseudomonas aeruginosa PAO19
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA149
NOCE323261 ncbi Nitrosococcus oceani ATCC 197079
NMEN272831 ncbi Neisseria meningitidis FAM188
NMEN122587 ncbi Neisseria meningitidis Z24918
NMEN122586 ncbi Neisseria meningitidis MC588
MXAN246197 ncbi Myxococcus xanthus DK 16228
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E8
MSP400668 ncbi Marinomonas sp. MWYL18
MPET420662 ncbi Methylibium petroleiphilum PM19
MFLA265072 ncbi Methylobacillus flagellatus KT8
MAQU351348 ncbi Marinobacter aquaeolei VT89
LCHO395495 ncbi Leptothrix cholodnii SP-69
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785789
JSP375286 ncbi Janthinobacterium sp. Marseille9
ILOI283942 ncbi Idiomarina loihiensis L2TR9
HHAL349124 ncbi Halorhodospira halophila SL19
HCHE349521 ncbi Hahella chejuensis KCTC 23969
HARS204773 ncbi Herminiimonas arsenicoxydans9
GURA351605 ncbi Geobacter uraniireducens Rf49
GSUL243231 ncbi Geobacter sulfurreducens PCA9
GMET269799 ncbi Geobacter metallireducens GS-159
ESP42895 Enterobacter sp.9
EFER585054 ncbi Escherichia fergusonii ATCC 354699
ECOO157 ncbi Escherichia coli O157:H7 EDL9339
ECOL83334 Escherichia coli O157:H79
ECOL585397 ncbi Escherichia coli ED1a9
ECOL585057 ncbi Escherichia coli IAI399
ECOL585056 ncbi Escherichia coli UMN0269
ECOL585055 ncbi Escherichia coli 559899
ECOL585035 ncbi Escherichia coli S889
ECOL585034 ncbi Escherichia coli IAI19
ECOL481805 ncbi Escherichia coli ATCC 87399
ECOL469008 ncbi Escherichia coli BL21(DE3)9
ECOL439855 ncbi Escherichia coli SMS-3-59
ECOL413997 ncbi Escherichia coli B str. REL6069
ECOL409438 ncbi Escherichia coli SE119
ECOL405955 ncbi Escherichia coli APEC O19
ECOL364106 ncbi Escherichia coli UTI899
ECOL362663 ncbi Escherichia coli 5369
ECOL331111 ncbi Escherichia coli E24377A9
ECOL316407 ncbi Escherichia coli K-12 substr. W31109
ECOL199310 ncbi Escherichia coli CFT0739
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10439
DSHI398580 ncbi Dinoroseobacter shibae DFL 128
DOLE96561 ncbi Desulfococcus oleovorans Hxd38
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G208
DARO159087 ncbi Dechloromonas aromatica RCB9
CVIO243365 ncbi Chromobacterium violaceum ATCC 124729
CSP501479 Citreicella sp. SE458
CSAL290398 ncbi Chromohalobacter salexigens DSM 30439
CPSY167879 ncbi Colwellia psychrerythraea 34H9
CJAP155077 Cellvibrio japonicus9
BVIE269482 ncbi Burkholderia vietnamiensis G49
BTHA271848 ncbi Burkholderia thailandensis E2649
BSP36773 Burkholderia sp.9
BPSE320373 ncbi Burkholderia pseudomallei 6688
BPSE320372 ncbi Burkholderia pseudomallei 1710b9
BPSE272560 ncbi Burkholderia pseudomallei K962439
BPET94624 Bordetella petrii8
BPAR257311 ncbi Bordetella parapertussis 128228
BMAL320389 ncbi Burkholderia mallei NCTC 102479
BMAL320388 ncbi Burkholderia mallei SAVP19
BMAL243160 ncbi Burkholderia mallei ATCC 233449
BCEN331272 ncbi Burkholderia cenocepacia HI24249
BCEN331271 ncbi Burkholderia cenocepacia AU 10549
BBRO257310 ncbi Bordetella bronchiseptica RB508
BAMB398577 ncbi Burkholderia ambifaria MC40-69
BAMB339670 ncbi Burkholderia ambifaria AMMD9
ASP76114 ncbi Aromatoleum aromaticum EbN19
ASP62977 ncbi Acinetobacter sp. ADP18
ASP62928 ncbi Azoarcus sp. BH729
ASP232721 ncbi Acidovorax sp. JS428
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4499
AHYD196024 Aeromonas hydrophila dhakensis9
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232709
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-19
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C8
ABOR393595 ncbi Alcanivorax borkumensis SK29
ABAU360910 ncbi Bordetella avium 197N8
AAVE397945 ncbi Acidovorax citrulli AAC00-19


Names of the homologs of the genes in the group in each of these orgs
  G7665   G7663   G7662   EG12147   EG12146   EG11682   EG11681   EG11680   EG10898   
YPSE349747 YPSIP31758_0443YPSIP31758_0445YPSIP31758_0446YPSIP31758_0437YPSIP31758_0438YPSIP31758_0439YPSIP31758_0440YPSIP31758_0442YPSIP31758_0441
YPSE273123 YPTB3524YPTB3522YPTB3521YPTB3530YPTB3529YPTB3528YPTB3527YPTB3525YPTB3526
YPES386656 YPDSF_0317YPDSF_0319YPDSF_0320YPDSF_0310YPDSF_0311YPDSF_0312YPDSF_0313YPDSF_0316YPDSF_0315
YPES377628 YPN_3462YPN_3460YPN_3459YPN_3469YPN_3468YPN_3467YPN_3466YPN_3463YPN_3464
YPES360102 YPA_3723YPA_3725YPA_3726YPA_3716YPA_3717YPA_3718YPA_3719YPA_3722YPA_3721
YPES349746 YPANGOLA_A1151YPANGOLA_A1149YPANGOLA_A1148YPANGOLA_A1157YPANGOLA_A1156YPANGOLA_A1155YPANGOLA_A1154YPANGOLA_A1152YPANGOLA_A1153
YPES214092 YPO3580YPO3578YPO3577YPO3587YPO3586YPO3585YPO3279YPO3581YPO3582
YPES187410 Y0152Y0150Y0149Y0159Y0158Y0157Y0156Y0153Y0154
YENT393305 YE3757YE3755YE3754YE3763YE3762YE3761YE3760YE3758YE3759
XORY360094 XOOORF_4032XOOORF_4030XOOORF_4029XOOORF_4041XOOORF_4038XOOORF_4036XOOORF_4035XOOORF_4033XOOORF_4034
XORY342109 XOO1185XOO1187XOO1188XOO1176XOO1179XOO1181XOO1182XOO1184XOO1183
XORY291331 XOO1286XOO1288XOO1289XOO1278XOO1280XOO1282XOO1283XOO1285XOO1284
XFAS405440 XFASM12_0758XFASM12_0760XFASM12_0761XFASM12_0751XFASM12_0753XFASM12_0755XFASM12_0757XFASM12_0756
XFAS183190 PD_0639PD_0641PD_0642PD_0632PD_0634PD_0636PD_0638PD_0637
XFAS160492 XF1410XF1412XF1413XF1403XF1405XF1407XF1409XF1408
XCAM487884 XCC-B100_1360XCC-B100_1362XCC-B100_1363XCC-B100_1352XCC-B100_1354XCC-B100_1356XCC-B100_1357XCC-B100_1359XCC-B100_1358
XCAM316273 XCAORF_3171XCAORF_3169XCAORF_3168XCAORF_3179XCAORF_3177XCAORF_3175XCAORF_3174XCAORF_3172XCAORF_3173
XCAM314565 XC_1313XC_1315XC_1316XC_1305XC_1307XC_1309XC_1310XC_1312XC_1311
XCAM190485 XCC2800XCC2798XCC2797XCC2808XCC2806XCC2804XCC2803XCC2801XCC2802
XAXO190486 XAC2970XAC2968XAC2967XAC2978XAC2976XAC2974XAC2973XAC2971XAC2972
VVUL216895 VV1_0690VV1_0688VV1_0687VV1_0697VV1_0695VV1_0694VV1_0693VV1_0691VV1_0692
VVUL196600 VV0450VV0452VV0453VV0444VV0445VV0446VV0447VV0449VV0448
VPAR223926 VP2668VP2666VP2674VP2673VP2672VP2671VP2669VP2670
VFIS312309 VF0389VF0391VF0392VF0383VF0384VF0385VF0386VF0388VF0387
VEIS391735 VEIS_0576VEIS_0153VEIS_0154VEIS_1281VEIS_1053VEIS_0601VEIS_0600VEIS_0577VEIS_0578
VCHO345073 VC0395_A2107VC0395_A2105VC0395_A2104VC0395_A2113VC0395_A2112VC0395_A2111VC0395_A2110VC0395_A2108VC0395_A2109
VCHO VC2527VC2524VC2523VC2533VC2532VC2531VC2530VC2528VC2529
TTUR377629 TERTU_3819TERTU_3817TERTU_3816TERTU_3825TERTU_3824TERTU_3823TERTU_3543TERTU_3820TERTU_3821
TDEN292415 TBD_0535TBD_0537TBD_0538TBD_2413TBD_0529TBD_0531TBD_0532TBD_0534TBD_0533
STYP99287 STM3318STM3316STM3315STM3324STM3323STM3322STM3321STM3319STM3320
SSP94122 SHEWANA3_0674SHEWANA3_0676SHEWANA3_0677SHEWANA3_0668SHEWANA3_0669SHEWANA3_0670SHEWANA3_0671SHEWANA3_0673SHEWANA3_0672
SSON300269 SSO_3348SSO_3346SSO_3345SSO_3354SSO_3353SSO_3352SSO_3351SSO_3349SSO_3350
SSED425104 SSED_0728SSED_0730SSED_0731SSED_0722SSED_0723SSED_0724SSED_0725SSED_0727SSED_0726
SPRO399741 SPRO_4365SPRO_4363SPRO_4362SPRO_4371SPRO_4370SPRO_4369SPRO_4368SPRO_4366SPRO_4367
SPEA398579 SPEA_3614SPEA_3612SPEA_3611SPEA_3621SPEA_3618SPEA_3617SPEA_3615SPEA_3616
SONE211586 SO_3959SO_3957SO_3956SO_3965SO_3964SO_3963SO_3962SO_3960SO_3961
SLOI323850 SHEW_3309SHEW_3307SHEW_3306SHEW_3315SHEW_3314SHEW_3313SHEW_3312SHEW_3310SHEW_3311
SHIGELLA YHBNYRBIYRBHPTSOYHBJPTSNYHBHYHBGRPON
SHAL458817 SHAL_3703SHAL_3701SHAL_3700SHAL_3709SHAL_3708SHAL_3707SHAL_3706SHAL_3704SHAL_3705
SGLO343509 SG0201SG0203SG0204SG0195SG0196SG0197SG0198SG0200SG0199
SFUM335543 SFUM_2073SFUM_0006SFUM_0773SFUM_2066SFUM_2067SFUM_2068SFUM_2070SFUM_2069
SFLE373384 SFV_3230SFV_3228SFV_3227SFV_3236SFV_3235SFV_3234SFV_3233SFV_3231SFV_3232
SFLE198214 AAN44706.1AAN44704.1AAN44703.1AAN44712.1AAN44711.1AAN44710.1AAN44709.1AAN44707.1AAN44708.1
SENT454169 SEHA_C3615SEHA_C3613SEHA_C3612SEHA_C3621SEHA_C3620SEHA_C3619SEHA_C3618SEHA_C3616SEHA_C3617
SENT321314 SCH_3256SCH_3254SCH_3253SCH_3262SCH_3261SCH_3260SCH_3259SCH_3257SCH_3258
SENT295319 SPA3185SPA3183SPA3182SPA3191SPA3190SPA3189SPA3188SPA3186SPA3187
SENT220341 STY3497STY3495STY3494STY3503STY3502STY3501STY3500STY3498STY3499
SENT209261 T3235T3233T3232T3241T3240T3239T3238T3236T3237
SDYS300267 SDY_3381SDY_3379SDY_3378SDY_3387SDY_3386SDY_3385SDY_3384SDY_3382SDY_3383
SDEN318161 SDEN_0491SDEN_0493SDEN_0494SDEN_0485SDEN_0486SDEN_0487SDEN_0488SDEN_0490SDEN_0489
SDEG203122 SDE_3177SDE_3175SDE_3174SDE_3182SDE_3181SDE_3180SDE_0532SDE_3178SDE_3179
SBOY300268 SBO_3182SBO_3184SBO_3185SBO_3176SBO_3177SBO_3178SBO_2635SBO_3181SBO_3180
SBAL402882 SHEW185_0688SHEW185_0690SHEW185_0691SHEW185_0682SHEW185_0683SHEW185_0684SHEW185_0685SHEW185_0687SHEW185_0686
SBAL399599 SBAL195_0718SBAL195_0720SBAL195_0721SBAL195_0712SBAL195_0713SBAL195_0714SBAL195_0715SBAL195_0717SBAL195_0716
SACI56780 SYN_00947SYN_00949SYN_00471SYN_01728SYN_00941SYN_00943SYN_00944SYN_00946SYN_00945
RSOL267608 RSC0410RSC0412RSC0413RSC0347RSC0403RSC0406RSC0407RSC0409RSC0408
RMET266264 RMET_0305RMET_0307RMET_0245RMET_0297RMET_0300RMET_0302RMET_0304RMET_0303
RFER338969 RFER_4236RFER_4237RFER_0602RFER_1653RFER_0751RFER_0750RFER_0777RFER_0778
REUT381666 H16_A0389H16_A0391H16_A0325H16_A0381H16_A0384H16_A0386H16_A0388H16_A0387
REUT264198 REUT_A0357REUT_A0359REUT_A0296REUT_A0350REUT_A0353REUT_A0354REUT_A0356REUT_A0355
PSYR223283 PSPTO_4451PSPTO_4449PSPTO_4448PSPTO_4457PSPTO_4456PSPTO_4455PSPTO_4454PSPTO_4452PSPTO_4453
PSYR205918 PSYR_4145PSYR_4143PSYR_4142PSYR_4151PSYR_4150PSYR_4149PSYR_4148PSYR_4146PSYR_4147
PSTU379731 PST_1033PST_1035PST_1036PST_1027PST_1028PST_1029PST_1030PST_1032PST_1031
PSP296591 BPRO_4487BPRO_4897BPRO_4898BPRO_0298BPRO_1300BPRO_4612BPRO_4613BPRO_4486BPRO_4485
PPUT76869 PPUTGB1_0961PPUTGB1_0963PPUTGB1_0964PPUTGB1_0955PPUTGB1_0956PPUTGB1_0957PPUTGB1_0958PPUTGB1_0960PPUTGB1_0959
PPUT351746 PPUT_0993PPUT_0995PPUT_0996PPUT_0987PPUT_0988PPUT_0989PPUT_0990PPUT_0992PPUT_0991
PPUT160488 PP_0954PP_0956PP_0957PP_0948PP_0949PP_0950PP_0951PP_0953PP_0952
PPRO298386 PBPRA3253PBPRA3251PBPRA3250PBPRA3259PBPRA3258PBPRA3257PBPRA3256PBPRA3254PBPRA3255
PNAP365044 PNAP_3708PNAP_4107PNAP_4108PNAP_0238PNAP_0906PNAP_3793PNAP_3794PNAP_3709PNAP_3710
PMEN399739 PMEN_0872PMEN_0874PMEN_0875PMEN_0866PMEN_0867PMEN_0868PMEN_0869PMEN_0871PMEN_0870
PLUM243265 PLU4039PLU4037PLU4036PLU4045PLU4044PLU4043PLU4042PLU4040PLU4041
PING357804 PING_2890PING_2888PING_0617PING_2895PING_2894PING_2893PING_0288PING_2891PING_2892
PHAL326442 PSHAA2549PSHAA2547PSHAA2546PSHAA2555PSHAA2554PSHAA2553PSHAA2552PSHAA2550PSHAA2551
PFLU220664 PFL_0917PFL_0919PFL_0920PFL_0911PFL_0912PFL_0913PFL_0914PFL_0916PFL_0915
PFLU216595 PFLU0884PFLU0886PFLU0887PFLU0878PFLU0879PFLU0880PFLU0881PFLU0883PFLU0882
PFLU205922 PFL_0859PFL_0861PFL_0862PFL_0853PFL_0854PFL_0855PFL_0856PFL_0858PFL_0857
PENT384676 PSEEN1095PSEEN1097PSEEN1098PSEEN1089PSEEN1090PSEEN1091PSEEN1092PSEEN1094PSEEN1093
PCAR338963 PCAR_1940PCAR_1942PCAR_1943PCAR_1930PCAR_1935PCAR_1936PCAR_1937PCAR_1939PCAR_1938
PATL342610 PATL_0566PATL_0564PATL_0563PATL_0572PATL_0571PATL_0570PATL_0569PATL_0567PATL_0568
PAER208964 PA4460PA4458PA4457PA4466PA4465PA4464PA4463PA4461PA4462
PAER208963 PA14_57920PA14_57900PA14_57890PA14_57980PA14_57970PA14_57960PA14_57950PA14_57930PA14_57940
NOCE323261 NOC_2791NOC_2789NOC_2788NOC_2799NOC_2797NOC_2795NOC_2794NOC_2792NOC_2793
NMEN272831 NMC1813NMC1815NMC1816NMC2025NMC0691NMC0689NMC1812NMC0212
NMEN122587 NMA2132NMA2134NMA2135NMA0391NMA0948NMA0946NMA2131NMA0049
NMEN122586 NMB_0355NMB_0353NMB_0352NMB_2045NMB_0738NMB_0736NMB_0356NMB_0217
MXAN246197 MXAN_1094MXAN_5923MXAN_6531MXAN_6564MXAN_1066MXAN_1065MXAN_1060MXAN_1061
MSUC221988 MS1715MS0995MS0996MS2180MS1718MS1717MS0352MS1716
MSP400668 MMWYL1_2416MMWYL1_1125MMWYL1_1123MMWYL1_2420MMWYL1_2419MMWYL1_3245MMWYL1_2417MMWYL1_2418
MPET420662 MPE_A0150MPE_A3808MPE_A3809MPE_A0324MPE_A3336MPE_A0225MPE_A0226MPE_A0149MPE_A0148
MFLA265072 MFLA_0140MFLA_0138MFLA_0137MFLA_0147MFLA_0145MFLA_0143MFLA_0141MFLA_0142
MAQU351348 MAQU_2713MAQU_2711MAQU_2710MAQU_2719MAQU_2718MAQU_2717MAQU_2716MAQU_2714MAQU_2715
LCHO395495 LCHO_4227LCHO_0183LCHO_0182LCHO_1031LCHO_3490LCHO_0472LCHO_0471LCHO_4226LCHO_4225
KPNE272620 GKPORF_B2945GKPORF_B2943GKPORF_B2942GKPORF_B2951GKPORF_B2950GKPORF_B2949GKPORF_B2948GKPORF_B2946GKPORF_B2947
JSP375286 MMA_3350MMA_3348MMA_3347MMA_0174MMA_3120MMA_3118MMA_3353MMA_3351MMA_3352
ILOI283942 IL0398IL0400IL0401IL0392IL0393IL0394IL0395IL0397IL0396
HHAL349124 HHAL_2124HHAL_2122HHAL_2121HHAL_2132HHAL_2130HHAL_2128HHAL_2127HHAL_2125HHAL_2126
HCHE349521 HCH_05318HCH_05316HCH_05315HCH_05325HCH_05324HCH_05323HCH_05322HCH_05319HCH_05320
HARS204773 HEAR3107HEAR3105HEAR3104HEAR0148HEAR2885HEAR2883HEAR3110HEAR3108HEAR3109
GURA351605 GURA_2974GURA_2976GURA_2977GURA_2966GURA_2968GURA_0893GURA_2971GURA_2973GURA_2972
GSUL243231 GSU_1889GSU_1892GSU_1893GSU_1882GSU_1884GSU_0735GSU_1886GSU_1888GSU_1887
GMET269799 GMET_1281GMET_1279GMET_1278GMET_1288GMET_1286GMET_2604GMET_1284GMET_1282GMET_1283
ESP42895 ENT638_3636ENT638_3634ENT638_3633ENT638_3642ENT638_3641ENT638_3640ENT638_3639ENT638_3637ENT638_3638
EFER585054 EFER_3177EFER_3175EFER_3174EFER_3183EFER_3182EFER_3181EFER_3180EFER_3178EFER_3179
ECOO157 YHBNYRBIYRBHPTSOYHBJPTSNYHBHYHBGRPON
ECOL83334 ECS4079ECS4077ECS4076ECS4085ECS4084ECS4083ECS4082ECS4080ECS4081
ECOL585397 ECED1_3858ECED1_3856ECED1_3855ECED1_3864ECED1_3863ECED1_3862ECED1_3861ECED1_3859ECED1_3860
ECOL585057 ECIAI39_3695ECIAI39_3693ECIAI39_3692ECIAI39_3701ECIAI39_3700ECIAI39_3699ECIAI39_3698ECIAI39_3696ECIAI39_3697
ECOL585056 ECUMN_3680ECUMN_3678ECUMN_3677ECUMN_3686ECUMN_3685ECUMN_3684ECUMN_3683ECUMN_3681ECUMN_3682
ECOL585055 EC55989_3618EC55989_3616EC55989_3615EC55989_3624EC55989_3623EC55989_3622EC55989_3621EC55989_3619EC55989_3620
ECOL585035 ECS88_3583ECS88_3581ECS88_3580ECS88_3590ECS88_3588ECS88_3587ECS88_3586ECS88_3584ECS88_3585
ECOL585034 ECIAI1_3348ECIAI1_3346ECIAI1_3345ECIAI1_3354ECIAI1_3353ECIAI1_3352ECIAI1_3351ECIAI1_3349ECIAI1_3350
ECOL481805 ECOLC_0500ECOLC_0502ECOLC_0503ECOLC_0494ECOLC_0495ECOLC_0496ECOLC_0497ECOLC_0499ECOLC_0498
ECOL469008 ECBD_0542ECBD_0544ECBD_0545ECBD_0536ECBD_0537ECBD_0538ECBD_0539ECBD_0541ECBD_0540
ECOL439855 ECSMS35_3496ECSMS35_3494ECSMS35_3493ECSMS35_3502ECSMS35_3501ECSMS35_3500ECSMS35_3499ECSMS35_3497ECSMS35_3498
ECOL413997 ECB_03065ECB_03063ECB_03062ECB_03071ECB_03070ECB_03069ECB_03068ECB_03066ECB_03067
ECOL409438 ECSE_3484ECSE_3482ECSE_3481ECSE_3490ECSE_3489ECSE_3488ECSE_3487ECSE_3485ECSE_3486
ECOL405955 APECO1_3235APECO1_3237APECO1_3238APECO1_3229APECO1_3230APECO1_3231APECO1_3232APECO1_3234APECO1_3233
ECOL364106 UTI89_C3636UTI89_C3634UTI89_C3633UTI89_C3642UTI89_C3641UTI89_C3640UTI89_C3639UTI89_C3637UTI89_C3638
ECOL362663 ECP_3288ECP_3286ECP_3285ECP_3294ECP_3293ECP_3292ECP_3291ECP_3289ECP_3290
ECOL331111 ECE24377A_3688ECE24377A_3686ECE24377A_3685ECE24377A_3694ECE24377A_3693ECE24377A_3692ECE24377A_3691ECE24377A_3689ECE24377A_3690
ECOL316407 ECK3189:JW3167:B3200ECK3187:JW3165:B3198ECK3186:JW3164:B3197ECK3195:JW3173:B3206ECK3194:JW3172:B3205ECK3193:JW3171:B3204ECK3192:JW3170:B3203ECK3190:JW3168:B3201ECK3191:JW3169:B3202
ECOL199310 C3960C3958C3957C3966C3965C3964C3963C3961C3962
ECAR218491 ECA0290ECA0292ECA0293ECA0284ECA0285ECA0286ECA0287ECA0289ECA0288
DSHI398580 DSHI_3586DSHI_3588DSHI_0207DSHI_0209DSHI_3582DSHI_3583DSHI_3585DSHI_3584
DOLE96561 DOLE_0510DOLE_2110DOLE_2699DOLE_0503DOLE_0504DOLE_0505DOLE_0507DOLE_0506
DDES207559 DDE_1767DDE_0335DDE_1090DDE_1774DDE_1773DDE_1772DDE_1770DDE_1771
DARO159087 DARO_3421DARO_3419DARO_3418DARO_4083DARO_0070DARO_4147DARO_4148DARO_4150DARO_4149
CVIO243365 CV_3330CV_3328CV_3327CV_0815CV_3336CV_3334CV_3333CV_3331CV_3332
CSP501479 CSE45_3596CSE45_5498CSE45_3334CSE45_4175CSE45_4173CSE45_3593CSE45_3595CSE45_0512
CSAL290398 CSAL_2224CSAL_2222CSAL_2221CSAL_2230CSAL_2229CSAL_2228CSAL_2227CSAL_2225CSAL_2226
CPSY167879 CPS_4541CPS_4539CPS_4538CPS_4547CPS_4546CPS_4545CPS_4544CPS_4542CPS_4543
CJAP155077 CJA_2803CJA_2801CJA_2800CJA_2810CJA_2809CJA_2808CJA_2807CJA_2804CJA_2806
BVIE269482 BCEP1808_2894BCEP1808_2892BCEP1808_2891BCEP1808_2961BCEP1808_2900BCEP1808_2898BCEP1808_2897BCEP1808_2895BCEP1808_2896
BTHA271848 BTH_I0488BTH_I0490BTH_I0491BTH_I0412BTH_I0482BTH_I0484BTH_I0485BTH_I0487BTH_I0486
BSP36773 BCEP18194_A6119BCEP18194_A6117BCEP18194_A6116BCEP18194_A6190BCEP18194_A6125BCEP18194_A6123BCEP18194_A6122BCEP18194_A6120BCEP18194_A6121
BPSE320373 BURPS668_0583BURPS668_0585BURPS668_0586BURPS668_0473BURPS668_0577BURPS668_0579BURPS668_0582BURPS668_0581
BPSE320372 BURPS1710B_A0809BURPS1710B_A0811BURPS1710B_A0812BURPS1710B_A0698BURPS1710B_A0803BURPS1710B_A0805BURPS1710B_A0806BURPS1710B_A0808BURPS1710B_A0807
BPSE272560 BPSL0535BPSL0537BPSL0538BPSL0439BPSL0529BPSL0531BPSL0532BPSL0534BPSL0533
BPET94624 BPET0452BPET0453BPET2830BPET0443BPET0447BPET0448BPET0449BPET0085
BPAR257311 BPP4029BPP4028BPP1967BPP4038BPP4034BPP4033BPP4032BPP4336
BMAL320389 BMA10247_2944BMA10247_2946BMA10247_2947BMA10247_2833BMA10247_2938BMA10247_2940BMA10247_2941BMA10247_2943BMA10247_2942
BMAL320388 BMASAVP1_A0074BMASAVP1_A0072BMASAVP1_A0071BMASAVP1_A0186BMASAVP1_A0080BMASAVP1_A0078BMASAVP1_A0077BMASAVP1_A0075BMASAVP1_A0076
BMAL243160 BMA_3105BMA_3103BMA_3102BMA_3212BMA_3112BMA_3110BMA_3109BMA_3107BMA_3108
BCEN331272 BCEN2424_2789BCEN2424_2787BCEN2424_2786BCEN2424_2861BCEN2424_2795BCEN2424_2793BCEN2424_2792BCEN2424_2790BCEN2424_2791
BCEN331271 BCEN_2175BCEN_2173BCEN_2172BCEN_2247BCEN_2181BCEN_2179BCEN_2178BCEN_2176BCEN_2177
BBRO257310 BB4502BB4501BB2154BB4511BB4507BB4506BB4505BB4922
BAMB398577 BAMMC406_2707BAMMC406_2705BAMMC406_2704BAMMC406_2778BAMMC406_2713BAMMC406_2711BAMMC406_2710BAMMC406_2708BAMMC406_2709
BAMB339670 BAMB_2849BAMB_2847BAMB_2846BAMB_2916BAMB_2855BAMB_2853BAMB_2852BAMB_2850BAMB_2851
ASP76114 EBA1320EBA1316EBA1315EBD68EBA3650EBA3391EBB108EBA3394EBA3393
ASP62977 ACIAD1485ACIAD1483ACIAD1482ACIAD3058ACIAD3059ACIAD0658ACIAD1486ACIAD0657
ASP62928 AZO0791AZO0793AZO0794AZO3781AZO0399AZO0502AZO0503AZO0505AZO0504
ASP232721 AJS_4131AJS_4132AJS_0296AJS_0902AJS_3926AJS_3927AJS_0347AJS_0348
ASAL382245 ASA_0313ASA_0311ASA_0310ASA_0319ASA_0318ASA_0317ASA_0316ASA_0314ASA_0315
AHYD196024 AHA_3925AHA_3927AHA_3928AHA_3919AHA_3920AHA_3921AHA_3922AHA_3924AHA_3923
AFER243159 AFE_0083AFE_0081AFE_0080AFE_0091AFE_0089AFE_0087AFE_0086AFE_0084AFE_0085
AEHR187272 MLG_2228MLG_2226MLG_2225MLG_2234MLG_2233MLG_2232MLG_2231MLG_2229MLG_2230
ADEH290397 ADEH_4172ADEH_4064ADEH_0152ADEH_0147ADEH_4165ADEH_4166ADEH_4168ADEH_4167
ABOR393595 ABO_0554ABO_0556ABO_0557ABO_0548ABO_0549ABO_0550ABO_0551ABO_0553ABO_0552
ABAU360910 BAV3115BAV3114BAV1397BAV3158BAV3156BAV3155BAV3118BAV3349
AAVE397945 AAVE_0417AAVE_4784AAVE_4785AAVE_0353AAVE_3603AAVE_4557AAVE_4558AAVE_0418AAVE_0419


Organism features enriched in list (features available for 152 out of the 160 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 1.204e-6792
Disease:Bubonic_plague 0.000291766
Disease:Dysentery 0.000291766
Disease:Gastroenteritis 0.00014081013
Endospores:No 4.614e-633211
Endospores:Yes 9.970e-6253
GC_Content_Range4:0-40 4.045e-332213
GC_Content_Range4:40-60 1.475e-1295224
GC_Content_Range4:60-100 0.000102655145
GC_Content_Range7:30-40 1.550e-232166
GC_Content_Range7:50-60 3.615e-1562107
GC_Content_Range7:60-70 0.000015754134
Genome_Size_Range5:2-4 2.822e-825197
Genome_Size_Range5:4-6 1.141e-27103184
Genome_Size_Range5:6-10 0.00008202447
Genome_Size_Range9:2-3 1.005e-612120
Genome_Size_Range9:4-5 3.048e-105196
Genome_Size_Range9:5-6 5.678e-135288
Genome_Size_Range9:6-8 0.00001332238
Gram_Stain:Gram_Neg 1.471e-27140333
Habitat:Multiple 0.007977457178
Habitat:Specialized 0.0037731653
Motility:No 8.177e-1013151
Motility:Yes 4.481e-14109267
Oxygen_Req:Anaerobic 6.574e-610102
Oxygen_Req:Facultative 2.920e-778201
Pathogenic_in:No 0.001960345226
Pathogenic_in:Plant 0.00012601115
Shape:Coccus 0.0000165782
Shape:Rod 5.942e-18133347
Shape:Spiral 0.0003152134
Temp._range:Mesophilic 0.0001061138473



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 113
Effective number of orgs (counting one per cluster within 468 clusters): 99

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I1
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TROS309801 ncbi Thermomicrobium roseum DSM 51590
TPEN368408 ncbi Thermofilum pendens Hrk 51
TMAR243274 ncbi Thermotoga maritima MSB81
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
STRO369723 ncbi Salinispora tropica CNB-4401
STOK273063 ncbi Sulfolobus tokodaii 71
SSOL273057 ncbi Sulfolobus solfataricus P21
SMAR399550 ncbi Staphylothermus marinus F10
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RSP357808 ncbi Roseiflexus sp. RS-11
RSP101510 ncbi Rhodococcus jostii RHA11
RALB246199 Ruminococcus albus 81
PTOR263820 ncbi Picrophilus torridus DSM 97900
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PHOR70601 ncbi Pyrococcus horikoshii OT30
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PAER178306 ncbi Pyrobaculum aerophilum IM20
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
NFAR247156 ncbi Nocardia farcinica IFM 101521
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-11
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra1
MTUB336982 ncbi Mycobacterium tuberculosis F111
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H1
MTBRV ncbi Mycobacterium tuberculosis H37Rv1
MTBCDC ncbi Mycobacterium tuberculosis CDC15511
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSP189918 ncbi Mycobacterium sp. KMS1
MSP164757 ncbi Mycobacterium sp. JLS1
MSP164756 ncbi Mycobacterium sp. MCS1
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1291
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG11
MMOB267748 ncbi Mycoplasma mobile 163K1
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MLEP272631 ncbi Mycobacterium leprae TN1
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2321
MHYO262722 ncbi Mycoplasma hyopneumoniae 74481
MHYO262719 ncbi Mycoplasma hyopneumoniae J1
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK1
MGEN243273 ncbi Mycoplasma genitalium G371
MFLO265311 ncbi Mesoplasma florum L11
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273431
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P21
MBOV233413 ncbi Mycobacterium bovis AF2122/971
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MAVI243243 ncbi Mycobacterium avium 1041
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A1
MABS561007 ncbi Mycobacterium abscessus ATCC 199771
LXYL281090 ncbi Leifsonia xyli xyli CTCB071
KRAD266940 ncbi Kineococcus radiotolerans SRS302161
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167901
HSP64091 ncbi Halobacterium sp. NRC-10
HSAL478009 ncbi Halobacterium salinarum R10
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
FSP1855 Frankia sp. EAN1pec1
FSP106370 ncbi Frankia sp. CcI31
FALN326424 ncbi Frankia alni ACN14a1
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DSP255470 ncbi Dehalococcoides sp. CBDB10
DSP216389 ncbi Dehalococcoides sp. BAV10
DETH243164 ncbi Dehalococcoides ethenogenes 1950
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF81
CJEI306537 ncbi Corynebacterium jeikeium K4111
BXEN266265 ncbi Burkholderia xenovorans LB4001
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)0
BCIC186490 Candidatus Baumannia cicadellinicola1
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K10
ANAE240017 Actinomyces oris MG11
AMAR234826 ncbi Anaplasma marginale St. Maries0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040


Names of the homologs of the genes in the group in each of these orgs
  G7665   G7663   G7662   EG12147   EG12146   EG11682   EG11681   EG11680   EG10898   
WPIP955
WPIP80849
UURE95667
UURE95664
UPAR505682
UMET351160 RCIX953
TWHI218496
TWHI203267
TVOL273116
TROS309801
TPEN368408 TPEN_1091
TMAR243274 TM_1054
TKOD69014
TACI273075
STRO369723 STROP_3101
STOK273063 ST1422
SSOL273057 SSO0094
SMAR399550
SACI330779
RSP357808 ROSERS_3303
RSP101510 RHA1_RO07174
RALB246199 GRAORF_1682
PTOR263820
PISL384616
PHOR70601
PFUR186497
PAST100379
PARS340102
PAER178306
PABY272844
OTSU357244
NSEN222891
NPHA348780
NFAR247156 NFA35930
MVAN350058 MVAN_2698
MTUB419947 MRA_1430
MTUB336982 TBFG_11450
MTHE349307
MTHE187420 MTH1071
MTBRV RV1421
MTBCDC MT1464
MSYN262723
MSTA339860
MSP189918 MKMS_2443
MSP164757 MJLS_2437
MSP164756 MMCS_2396
MSED399549
MPUL272635
MPNE272634 MPN053
MMYC272632 MSC_0842
MMOB267748 MMOB4060
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR368407
MMAR267377
MLEP272631 ML0563
MLAB410358
MKAN190192
MJAN243232
MHYO295358 MHP628
MHYO262722 MHP7448_0609
MHYO262719 MHJ_0611
MHUN323259
MGIL350054 MFLV_3714
MGEN243273 MG_041
MFLO265311 MFL181
MCAP340047 MCAP_0853
MBUR259564
MBOV410289 BCG_1482
MBOV233413 MB1456
MBAR269797
MAVI243243 MAV_3359
MART243272
MAEO419665
MACE188937 MA3766
MABS561007 MAB_2783C
LXYL281090 LXX11490
KRAD266940 KRAD_2934
IHOS453591
HWAL362976 HQ2708A
HSP64091
HSAL478009
HMUK485914
HBUT415426
FSP1855 FRANEAN1_2060
FSP106370 FRANCCI3_1634
FALN326424 FRAAL4592
ERUM302409
ERUM254945
ECHA205920
ECAN269484
DSP255470
DSP216389
DETH243164
CSUL444179
CMET456442
CMAQ397948
CKOR374847 KCR_1255
CJEI306537 JK1004
BXEN266265 BXE_B1172
BSP107806
BCIC186490 BCI_0034
BAPH372461
BAPH198804
AYEL322098
AURANTIMONAS
APHA212042
APER272557
ANAE240017 ANA_0711
AMAR234826
AFUL224325


Organism features enriched in list (features available for 103 out of the 113 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Aggregates 0.009489059
Arrangment:Chains 6.695e-6392
Arrangment:Pairs 0.00086559112
Arrangment:Singles 0.000615865286
Disease:Tuberculosis 0.005382633
Endospores:No 1.228e-1472211
Endospores:Yes 0.0015347253
GC_Content_Range7:0-30 0.00002002047
GC_Content_Range7:30-40 0.000932517166
GC_Content_Range7:50-60 0.008760911107
Genome_Size_Range5:0-2 8.500e-1155155
Genome_Size_Range5:2-4 0.003955724197
Genome_Size_Range5:4-6 0.000210718184
Genome_Size_Range9:0-1 6.897e-101927
Genome_Size_Range9:1-2 0.000332036128
Genome_Size_Range9:3-4 0.0017988577
Genome_Size_Range9:4-5 0.0067071996
Gram_Stain:Gram_Neg 4.462e-1129333
Habitat:Multiple 8.643e-614178
Habitat:Specialized 0.00001162253
Motility:No 0.000046943151
Motility:Yes 0.001360534267
Optimal_temp.:- 0.003806134257
Optimal_temp.:100 0.005382633
Optimal_temp.:35-40 0.005382633
Optimal_temp.:85 0.000928044
Oxygen_Req:Anaerobic 3.425e-635102
Oxygen_Req:Facultative 0.000121220201
Pathogenic_in:Human 7.253e-619213
Pathogenic_in:No 0.004414751226
Pathogenic_in:Ruminant 0.005382633
Shape:Irregular_coccus 4.982e-141717
Shape:Rod 1.449e-934347
Shape:Sphere 4.134e-91519
Temp._range:Hyperthermophilic 1.124e-101823
Temp._range:Mesophilic 7.063e-863473
Temp._range:Thermophilic 0.00751641235



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ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 4
Effective number of orgs (counting one per cluster within 468 clusters): 4

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
SACI56780 ncbi Syntrophus aciditrophicus SB 0.001825011809
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 23270 0.004345312999
NOCE323261 ncbi Nitrosococcus oceani ATCC 19707 0.007118113729
HHAL349124 ncbi Halorhodospira halophila SL1 0.007501613809


Names of the homologs of the genes in the group in each of these orgs
  G7665   G7663   G7662   EG12147   EG12146   EG11682   EG11681   EG11680   EG10898   
SACI56780 SYN_00947SYN_00949SYN_00471SYN_01728SYN_00941SYN_00943SYN_00944SYN_00946SYN_00945
AFER243159 AFE_0083AFE_0081AFE_0080AFE_0091AFE_0089AFE_0087AFE_0086AFE_0084AFE_0085
NOCE323261 NOC_2791NOC_2789NOC_2788NOC_2799NOC_2797NOC_2795NOC_2794NOC_2792NOC_2793
HHAL349124 HHAL_2124HHAL_2122HHAL_2121HHAL_2132HHAL_2130HHAL_2128HHAL_2127HHAL_2125HHAL_2126


Organism features enriched in list (features available for 4 out of the 4 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  



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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951340.6649
GLYCOCAT-PWY (glycogen degradation I)2461510.6601
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181410.6549
AST-PWY (arginine degradation II (AST pathway))120990.6352
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251350.5906
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3001570.5879
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)1491060.5834
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)1761160.5778
PWY-5918 (heme biosynthesis I)2721450.5567
PWY-1269 (CMP-KDO biosynthesis I)3251580.5482
ECASYN-PWY (enterobacterial common antigen biosynthesis)1911170.5414
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2901470.5342
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2911470.5322
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2961480.5296
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2861450.5275
PWY-4041 (γ-glutamyl cycle)2791430.5271
PWY-5148 (acyl-CoA hydrolysis)2271270.5245
PWY-5386 (methylglyoxal degradation I)3051480.5121
LIPASYN-PWY (phospholipases)2121200.5083
NAGLIPASYN-PWY (lipid IVA biosynthesis)3481580.5078
TYRFUMCAT-PWY (tyrosine degradation I)1841100.5053
PWY-5913 (TCA cycle variation IV)3011450.4977
GLUCONSUPER-PWY (D-gluconate degradation)2291240.4968
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491300.4954
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491300.4954
PWY0-981 (taurine degradation IV)106770.4867
GLUTATHIONESYN-PWY (glutathione biosynthesis)3391530.4864
PWY-5755 (4-hydroxybenzoate biosynthesis II (bacteria and fungi))81650.4828
GALACTITOLCAT-PWY (galactitol degradation)73610.4827
GLUCARDEG-PWY (D-glucarate degradation I)152950.4787
PWY0-541 (cyclopropane fatty acid (CFA) biosynthesis)3001420.4776
GDPRHAMSYN-PWY (GDP-D-rhamnose biosynthesis)156950.4659
PWY0-1182 (trehalose degradation II (trehalase))70580.4656
PWY-5857 (ubiquinone-10 biosynthesis (prokaryotic))1831040.4598
REDCITCYC (TCA cycle variation II)1741000.4530
PWY0-1329 (succinate to cytochrome bo oxidase electron transfer)96690.4513
SULFATE-CYS-PWY (superpathway of sulfate assimilation and cysteine biosynthesis)3651530.4420
PWY-3162 (tryptophan degradation V (side chain pathway))94670.4399
PWY0-845 (superpathway of pyridoxal 5'-phosphate biosynthesis and salvage)3291440.4380
PWY-5855 (ubiquinone-7 biosynthesis (prokaryotic))1911040.4378
P601-PWY (D-camphor degradation)95670.4354
PWY-6196 (serine racemization)102700.4349
CHOLINE-BETAINE-ANA-PWY (choline degradation I)135830.4310
GLUCARGALACTSUPER-PWY (superpathway of D-glucarate and D-galactarate degradation)135830.4310
PWY-5856 (ubiquinone-9 biosynthesis (prokaryotic))2551230.4297
BETSYN-PWY (glycine betaine biosynthesis I (Gram-negative bacteria))138840.4296
GALACTARDEG-PWY (D-galactarate degradation I)151880.4220
P344-PWY (acrylonitrile degradation)2101080.4202
UBISYN-PWY (ubiquinol-8 biosynthesis (prokaryotic))3981570.4191
PWY0-901 (selenocysteine biosynthesis I (bacteria))2301140.4182
GLYOXYLATE-BYPASS (glyoxylate cycle)169940.4181
PWY-5340 (sulfate activation for sulfonation)3851540.4168
4AMINOBUTMETAB-PWY (superpathway of 4-aminobutyrate degradation)2121080.4153
PWY-561 (superpathway of glyoxylate cycle)162910.4137
PWY-6134 (tyrosine biosynthesis IV)89620.4110
P184-PWY (protocatechuate degradation I (meta-cleavage pathway))94640.4091
PWY0-1299 (arginine dependent acid resistance)1991030.4089
SO4ASSIM-PWY (sulfate reduction I (assimilatory))3111350.4051
PWY0-1335 (NADH to cytochrome bo oxidase electron transfer)112710.4041
PWY-5028 (histidine degradation II)130780.4034



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G7663   G7662   EG12147   EG12146   EG11682   EG11681   EG11680   EG10898   
G76650.9997630.9997230.9995040.9996230.99970.9996740.9998980.999775
G76630.9998450.9993860.999560.9995660.9996190.9997280.999641
G76620.9993080.999460.9995440.9995690.9996930.999531
EG121470.9997440.999550.9994930.9995010.999523
EG121460.9997350.9997250.9996440.999739
EG116820.999770.9998650.999801
EG116810.9997350.999835
EG116800.999952
EG10898



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PAIRWISE BLAST SCORES:

  G7665   G7663   G7662   EG12147   EG12146   EG11682   EG11681   EG11680   EG10898   
G76650.0f0--------
G7663-0.0f0-------
G7662--0.0f0------
EG12147---0.0f0-----
EG12146----0.0f0----
EG11682-----0.0f0---
EG11681------0.0f0--
EG11680-------0.0f0-
EG10898--------0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- KDO-NAGLIPASYN-PWY (superpathway of KDO2-lipid A biosynthesis) (degree of match pw to cand: 0.125, degree of match cand to pw: 0.222, average score: 0.609)
  Genes in pathway or complex:
             0.8441 0.7608 EG10520 (waaA) KDOTRANS-MONOMER (KDO transferase)
             0.0430 0.0003 EG10545 (lpxA) UDPNACETYLGLUCOSAMACYLTRANS-MONOMER (LpxA)
             0.9448 0.8872 EG10265 (lpxC) UDPACYLGLCNACDEACETYL-MONOMER (UDP-3-O-acyl-N-acetylglucosamine deacetylase)
             0.1045 0.0003 EG10316 (lpxD) UDPHYDROXYMYRGLUCOSAMNACETYLTRANS-MONO (UDP-3-O-[3-hydroxymyristoyl]glucosamine N-acetyltransferase)
             0.0667 0.0034 EG12666 (lpxH) EG12666-MONOMER (UDP-2,3-diacylglucosamine hydrolase)
             0.2546 0.0792 EG11409 (lpxK) TETRAACYLDISACC4KIN-MONOMER (tetraacyldisaccharide 4'-kinase)
             0.0531 0.0003 EG10546 (lpxB) LIPIDADISACCHARIDESYNTH-MONOMER (LpxB)
             0.8035 0.7047 EG10464 (lpxL) LAUROYLACYLTRAN-MONOMER (lauroyl acyltransferase)
             0.9323 0.8955 G7241 (lpxP) PALMITOTRANS-MONOMER (palmitoleoyl acyltransferase)
             0.5450 0.2885 EG10614 (lpxM) MYRISTOYLACYLTRAN-MONOMER (myristoyl-acyl carrier protein (ACP)-dependent acyltransferase)
             0.9995 0.9991 EG10973 (gutQ) EG10973-MONOMER (D-arabinose 5-phosphate isomerase)
   *in cand* 0.9996 0.9993 G7662 (kdsD) G7662-MONOMER (D-arabinose 5-phosphate isomerase)
             0.6947 0.1951 EG10518 (kdsA) KDO-8PSYNTH-MONOMER (3-deoxy-D-manno-octulosonate 8-phosphate synthase)
   *in cand* 0.9997 0.9994 G7663 (kdsC) G7663-MONOMER (3-deoxy-D-manno-octulosonate 8-phosphate phosphatase monomer)
             0.7576 0.3948 EG10519 (kdsB) CPM-KDOSYNTH-MONOMER (3-deoxy-D-manno-octulosonate cytidylyltransferase)
             0.0015 0.0003 EG50003 (acpP) TRANS-DELTA3-CIS-DELTA5-DODECENOYL-ACP (trans-Δ3-cis-Δ5-dodecenoyl-ACP)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9998 0.9995 EG10898 (rpoN) RPON-MONOMER (RNA polymerase, sigma 54 (sigma N) factor)
   *in cand* 0.9998 0.9995 EG11680 (lptB) YHBG-MONOMER (LptB)
   *in cand* 0.9997 0.9995 EG11681 (hpf) EG11681-MONOMER (predicted ribosome-associated, sigma 54 modulation protein)
   *in cand* 0.9997 0.9995 EG11682 (ptsN) EG11682-MONOMER (phosphotransferase system enzyme IIA, regulates N metabolism)
   *in cand* 0.9997 0.9995 EG12146 (yhbJ) EG12146-MONOMER (predicted P-loop containing ATPase)
   *in cand* 0.9996 0.9993 EG12147 (npr) EG12147-MONOMER (phosphocarrier protein HPr-like NPr, nitrogen related, exchanges phosphate with Enzyme I, Hpr)
   *in cand* 0.9997 0.9995 G7665 (lptA) YHBN-MONOMER (LptA)

- ABC-53-CPLX (LptABCFG ABC transporter) (degree of match pw to cand: 0.400, degree of match cand to pw: 0.222, average score: 0.907)
  Genes in pathway or complex:
             0.9993 0.9991 G7664 (lptC) G7664-MONOMER (LptC)
   *in cand* 0.9998 0.9995 EG11680 (lptB) YHBG-MONOMER (LptB)
   *in cand* 0.9997 0.9995 G7665 (lptA) YHBN-MONOMER (LptA)
             0.6965 0.4725 G7888 (lptF) G7888-MONOMER (LptF)
             0.7695 0.4104 G7889 (lptG) G7889-MONOMER (LptG)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9998 0.9995 EG10898 (rpoN) RPON-MONOMER (RNA polymerase, sigma 54 (sigma N) factor)
   *in cand* 0.9997 0.9995 EG11681 (hpf) EG11681-MONOMER (predicted ribosome-associated, sigma 54 modulation protein)
   *in cand* 0.9997 0.9995 EG11682 (ptsN) EG11682-MONOMER (phosphotransferase system enzyme IIA, regulates N metabolism)
   *in cand* 0.9997 0.9995 EG12146 (yhbJ) EG12146-MONOMER (predicted P-loop containing ATPase)
   *in cand* 0.9996 0.9993 EG12147 (npr) EG12147-MONOMER (phosphocarrier protein HPr-like NPr, nitrogen related, exchanges phosphate with Enzyme I, Hpr)
   *in cand* 0.9996 0.9993 G7662 (kdsD) G7662-MONOMER (D-arabinose 5-phosphate isomerase)
   *in cand* 0.9997 0.9994 G7663 (kdsC) G7663-MONOMER (3-deoxy-D-manno-octulosonate 8-phosphate phosphatase monomer)

- LPSSYN-PWY (superpathway of lipopolysaccharide biosynthesis) (degree of match pw to cand: 0.080, degree of match cand to pw: 0.222, average score: 0.607)
  Genes in pathway or complex:
             0.0430 0.0003 EG10545 (lpxA) UDPNACETYLGLUCOSAMACYLTRANS-MONOMER (LpxA)
             0.9448 0.8872 EG10265 (lpxC) UDPACYLGLCNACDEACETYL-MONOMER (UDP-3-O-acyl-N-acetylglucosamine deacetylase)
             0.1045 0.0003 EG10316 (lpxD) UDPHYDROXYMYRGLUCOSAMNACETYLTRANS-MONO (UDP-3-O-[3-hydroxymyristoyl]glucosamine N-acetyltransferase)
             0.0667 0.0034 EG12666 (lpxH) EG12666-MONOMER (UDP-2,3-diacylglucosamine hydrolase)
             0.2546 0.0792 EG11409 (lpxK) TETRAACYLDISACC4KIN-MONOMER (tetraacyldisaccharide 4'-kinase)
             0.0531 0.0003 EG10546 (lpxB) LIPIDADISACCHARIDESYNTH-MONOMER (LpxB)
             0.9995 0.9991 EG10973 (gutQ) EG10973-MONOMER (D-arabinose 5-phosphate isomerase)
   *in cand* 0.9996 0.9993 G7662 (kdsD) G7662-MONOMER (D-arabinose 5-phosphate isomerase)
             0.6947 0.1951 EG10518 (kdsA) KDO-8PSYNTH-MONOMER (3-deoxy-D-manno-octulosonate 8-phosphate synthase)
   *in cand* 0.9997 0.9994 G7663 (kdsC) G7663-MONOMER (3-deoxy-D-manno-octulosonate 8-phosphate phosphatase monomer)
             0.7576 0.3948 EG10519 (kdsB) CPM-KDOSYNTH-MONOMER (3-deoxy-D-manno-octulosonate cytidylyltransferase)
             0.8441 0.7608 EG10520 (waaA) KDOTRANS-MONOMER (KDO transferase)
             0.5450 0.2885 EG10614 (lpxM) MYRISTOYLACYLTRAN-MONOMER (myristoyl-acyl carrier protein (ACP)-dependent acyltransferase)
             0.8035 0.7047 EG10464 (lpxL) LAUROYLACYLTRAN-MONOMER (lauroyl acyltransferase)
             0.7344 0.5386 EG11423 (waaK) EG11423-MONOMER (lipopolysaccharide core biosynthesis; heptosyl transferase IV; probably hexose transferase)
             0.8003 0.5749 EG11353 (waaJ) EG11353-MONOMER (UDP-glucose:(glucosyl)LPS α-1,2-glucosyltransferase)
             0.8045 0.6211 EG11352 (waaI) EG11352-MONOMER (UDP-D-glucose:(glucosyl)LPS α-1,3-glucosyltransferase)
             0.5901 0.3179 EG11351 (waaB) EG11351-MONOMER (UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase)
             0.8232 0.7695 EG11425 (waaY) EG11425-MONOMER (lipopolysaccharide core heptose (II) kinase)
             0.8037 0.7201 EG11341 (waaQ) EG11341-MONOMER (lipopolysaccharide core heptosyl transferase III)
             0.8166 0.7785 EG11340 (waaP) EG11340-MONOMER (lipopolysaccharide core heptose (I) kinase)
             0.6814 0.3633 EG11339 (waaG) EG11339-MONOMER (lipopolysaccharide glucosyltransferase I)
             0.8689 0.6957 EG12210 (waaF) EG12210-MONOMER (ADP-heptose:LPS heptosyltransferase II)
             0.7537 0.5875 EG11189 (waaC) EG11189-MONOMER (ADP-heptose:LPS heptosyl transferase I)
             0.0015 0.0003 EG50003 (acpP) TRANS-DELTA3-CIS-DELTA5-DODECENOYL-ACP (trans-Δ3-cis-Δ5-dodecenoyl-ACP)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9998 0.9995 EG10898 (rpoN) RPON-MONOMER (RNA polymerase, sigma 54 (sigma N) factor)
   *in cand* 0.9998 0.9995 EG11680 (lptB) YHBG-MONOMER (LptB)
   *in cand* 0.9997 0.9995 EG11681 (hpf) EG11681-MONOMER (predicted ribosome-associated, sigma 54 modulation protein)
   *in cand* 0.9997 0.9995 EG11682 (ptsN) EG11682-MONOMER (phosphotransferase system enzyme IIA, regulates N metabolism)
   *in cand* 0.9997 0.9995 EG12146 (yhbJ) EG12146-MONOMER (predicted P-loop containing ATPase)
   *in cand* 0.9996 0.9993 EG12147 (npr) EG12147-MONOMER (phosphocarrier protein HPr-like NPr, nitrogen related, exchanges phosphate with Enzyme I, Hpr)
   *in cand* 0.9997 0.9995 G7665 (lptA) YHBN-MONOMER (LptA)

- PWY-1269 (CMP-KDO biosynthesis I) (degree of match pw to cand: 0.400, degree of match cand to pw: 0.222, average score: 0.969)
  Genes in pathway or complex:
             0.7576 0.3948 EG10519 (kdsB) CPM-KDOSYNTH-MONOMER (3-deoxy-D-manno-octulosonate cytidylyltransferase)
   *in cand* 0.9997 0.9994 G7663 (kdsC) G7663-MONOMER (3-deoxy-D-manno-octulosonate 8-phosphate phosphatase monomer)
             0.6947 0.1951 EG10518 (kdsA) KDO-8PSYNTH-MONOMER (3-deoxy-D-manno-octulosonate 8-phosphate synthase)
   *in cand* 0.9996 0.9993 G7662 (kdsD) G7662-MONOMER (D-arabinose 5-phosphate isomerase)
             0.9995 0.9991 EG10973 (gutQ) EG10973-MONOMER (D-arabinose 5-phosphate isomerase)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9998 0.9995 EG10898 (rpoN) RPON-MONOMER (RNA polymerase, sigma 54 (sigma N) factor)
   *in cand* 0.9998 0.9995 EG11680 (lptB) YHBG-MONOMER (LptB)
   *in cand* 0.9997 0.9995 EG11681 (hpf) EG11681-MONOMER (predicted ribosome-associated, sigma 54 modulation protein)
   *in cand* 0.9997 0.9995 EG11682 (ptsN) EG11682-MONOMER (phosphotransferase system enzyme IIA, regulates N metabolism)
   *in cand* 0.9997 0.9995 EG12146 (yhbJ) EG12146-MONOMER (predicted P-loop containing ATPase)
   *in cand* 0.9996 0.9993 EG12147 (npr) EG12147-MONOMER (phosphocarrier protein HPr-like NPr, nitrogen related, exchanges phosphate with Enzyme I, Hpr)
   *in cand* 0.9997 0.9995 G7665 (lptA) YHBN-MONOMER (LptA)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10898 EG11680 EG11681 EG11682 EG12146 EG12147 G7662 G7663 G7665 (centered at EG10898)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7665   G7663   G7662   EG12147   EG12146   EG11682   EG11681   EG11680   EG10898   
191/623249/623332/623309/623381/623344/623346/623388/623340/623
AAEO224324:0:Tyes12411239794----0132
AAUR290340:2:Tyes---01865--354-
AAVE397945:0:Tyes644355435603194413441356566
ABAC204669:0:Tyes-27290-2742--604605
ABAU360910:0:Tyes-17241723017671765176317271961
ABOR393595:0:Tyes689012354
ABUT367737:0:Tyes-9230----1219-
ACAU438753:0:Tyes--3683769-0-36243623
ACEL351607:0:Tyes----200--0-
ACRY349163:8:Tyes--122402--12271577
ADEH290397:0:Tyes-40623954504055405640584057
AEHR187272:0:Tyes310987645
AFER243159:0:Tyes3101197645
AHYD196024:0:Tyes689012354
ALAI441768:0:Tyes---74-1290--
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