CANDIDATE ID: 51

CANDIDATE ID: 51

NUMBER OF GENES: 9
AVERAGE SCORE:    9.9967853e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    7.7777778e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7665 (lptA) (b3200)
   Products of gene:
     - YHBN-MONOMER (LptA)
     - ABC-53-CPLX (LptABCFG ABC transporter)

- G7663 (kdsC) (b3198)
   Products of gene:
     - G7663-MONOMER (3-deoxy-D-manno-octulosonate 8-phosphate phosphatase monomer)
     - KDO-8PPHOSPHAT-CPLX (3-deoxy-D-manno-octulosonate 8-phosphate phosphatase)
       Reactions:
        3-deoxy-D-manno-octulosonate 8-P + H2O  ->  3-deoxy-D-manno-octulosonate + phosphate
         In pathways
         LPSSYN-PWY (superpathway of lipopolysaccharide biosynthesis)
         KDO-NAGLIPASYN-PWY (superpathway of KDO2-lipid A biosynthesis)
         PWY-5111 (PWY-5111)
         PWY-1269 (CMP-KDO biosynthesis I)

- G7662 (kdsD) (b3197)
   Products of gene:
     - G7662-MONOMER (D-arabinose 5-phosphate isomerase)
     - CPLX0-1262 (D-arabinose 5-phosphate isomerase)
       Reactions:
        D-arabinose 5-phosphate  =  D-ribulose-5-phosphate
         In pathways
         LPSSYN-PWY (superpathway of lipopolysaccharide biosynthesis)
         KDO-NAGLIPASYN-PWY (superpathway of KDO2-lipid A biosynthesis)
         PWY-1269 (CMP-KDO biosynthesis I)

- EG12146 (yhbJ) (b3205)
   Products of gene:
     - EG12146-MONOMER (predicted P-loop containing ATPase)

- EG11682 (ptsN) (b3204)
   Products of gene:
     - EG11682-MONOMER (phosphotransferase system enzyme IIA, regulates N metabolism)

- EG11681 (hpf) (b3203)
   Products of gene:
     - EG11681-MONOMER (predicted ribosome-associated, sigma 54 modulation protein)

- EG11680 (lptB) (b3201)
   Products of gene:
     - YHBG-MONOMER (LptB)
     - ABC-53-CPLX (LptABCFG ABC transporter)

- EG10973 (gutQ) (b2708)
   Products of gene:
     - EG10973-MONOMER (D-arabinose 5-phosphate isomerase)
     - CPLX0-3929 (D-arabinose 5-phosphate isomerase)
       Reactions:
        D-arabinose 5-phosphate  =  D-ribulose-5-phosphate
         In pathways
         LPSSYN-PWY (superpathway of lipopolysaccharide biosynthesis)
         KDO-NAGLIPASYN-PWY (superpathway of KDO2-lipid A biosynthesis)
         PWY-1269 (CMP-KDO biosynthesis I)

- EG10898 (rpoN) (b3202)
   Products of gene:
     - RPON-MONOMER (RNA polymerase, sigma 54 (sigma N) factor)
     - RNAP54-CPLX (RNA polymerase sigma 54)



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ORGANISMS CONTAINING AT LEAST 8 GENES FROM THE GROUP:

Total number of orgs: 168
Effective number of orgs (counting one per cluster within 468 clusters): 111

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317589
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329539
YPES386656 ncbi Yersinia pestis Pestoides F9
YPES377628 ncbi Yersinia pestis Nepal5169
YPES360102 ncbi Yersinia pestis Antiqua9
YPES349746 ncbi Yersinia pestis Angola9
YPES214092 ncbi Yersinia pestis CO929
YPES187410 ncbi Yersinia pestis KIM 109
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80819
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A9
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110189
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103319
XFAS405440 ncbi Xylella fastidiosa M128
XFAS183190 ncbi Xylella fastidiosa Temecula18
XFAS160492 ncbi Xylella fastidiosa 9a5c8
XCAM487884 Xanthomonas campestris pv. paulliniae9
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-109
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80049
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339139
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3069
VVUL216895 ncbi Vibrio vulnificus CMCP69
VVUL196600 ncbi Vibrio vulnificus YJ0169
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106338
VFIS312309 ncbi Vibrio fischeri ES1149
VEIS391735 ncbi Verminephrobacter eiseniae EF01-29
VCHO345073 ncbi Vibrio cholerae O3959
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169619
TTUR377629 ncbi Teredinibacter turnerae T79019
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252599
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT29
SSP94122 ncbi Shewanella sp. ANA-39
SSON300269 ncbi Shigella sonnei Ss0469
SSED425104 ncbi Shewanella sediminis HAW-EB39
SPRO399741 ncbi Serratia proteamaculans 5689
SPEA398579 ncbi Shewanella pealeana ATCC 7003458
SONE211586 ncbi Shewanella oneidensis MR-19
SLOI323850 ncbi Shewanella loihica PV-49
SHIGELLA ncbi Shigella flexneri 2a str. 2457T9
SHAL458817 ncbi Shewanella halifaxensis HAW-EB49
SGLO343509 ncbi Sodalis glossinidius morsitans9
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB8
SFLE373384 ncbi Shigella flexneri 5 str. 84019
SFLE198214 ncbi Shigella flexneri 2a str. 3019
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4769
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B679
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91509
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT189
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty29
SDYS300267 ncbi Shigella dysenteriae Sd1979
SDEN318161 ncbi Shewanella denitrificans OS2179
SDEG203122 ncbi Saccharophagus degradans 2-409
SBOY300268 ncbi Shigella boydii Sb2279
SBAL402882 ncbi Shewanella baltica OS1859
SBAL399599 ncbi Shewanella baltica OS1959
SACI56780 ncbi Syntrophus aciditrophicus SB9
RSOL267608 ncbi Ralstonia solanacearum GMI10009
RMET266264 ncbi Ralstonia metallidurans CH348
RFER338969 ncbi Rhodoferax ferrireducens T1188
REUT381666 ncbi Ralstonia eutropha H168
REUT264198 ncbi Ralstonia eutropha JMP1348
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30009
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a9
PSTU379731 ncbi Pseudomonas stutzeri A15019
PSP56811 Psychrobacter sp.8
PSP296591 ncbi Polaromonas sp. JS6669
PPUT76869 ncbi Pseudomonas putida GB-19
PPUT351746 ncbi Pseudomonas putida F19
PPUT160488 ncbi Pseudomonas putida KT24409
PPRO298386 ncbi Photobacterium profundum SS99
PNAP365044 ncbi Polaromonas naphthalenivorans CJ29
PMUL272843 ncbi Pasteurella multocida multocida Pm708
PMEN399739 ncbi Pseudomonas mendocina ymp9
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO19
PING357804 ncbi Psychromonas ingrahamii 379
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1259
PFLU220664 ncbi Pseudomonas fluorescens Pf-59
PFLU216595 ncbi Pseudomonas fluorescens SBW259
PFLU205922 ncbi Pseudomonas fluorescens Pf0-19
PENT384676 ncbi Pseudomonas entomophila L489
PCRY335284 ncbi Psychrobacter cryohalolentis K58
PCAR338963 ncbi Pelobacter carbinolicus DSM 23809
PATL342610 ncbi Pseudoalteromonas atlantica T6c9
PARC259536 ncbi Psychrobacter arcticus 273-48
PAER208964 ncbi Pseudomonas aeruginosa PAO19
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA149
NOCE323261 ncbi Nitrosococcus oceani ATCC 197079
NMEN272831 ncbi Neisseria meningitidis FAM188
NMEN122587 ncbi Neisseria meningitidis Z24918
NMEN122586 ncbi Neisseria meningitidis MC588
MXAN246197 ncbi Myxococcus xanthus DK 16228
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E8
MSP400668 ncbi Marinomonas sp. MWYL18
MPET420662 ncbi Methylibium petroleiphilum PM19
MFLA265072 ncbi Methylobacillus flagellatus KT8
MCAP243233 ncbi Methylococcus capsulatus Bath8
MAQU351348 ncbi Marinobacter aquaeolei VT89
LCHO395495 ncbi Leptothrix cholodnii SP-69
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785789
JSP375286 ncbi Janthinobacterium sp. Marseille9
ILOI283942 ncbi Idiomarina loihiensis L2TR9
HSOM228400 ncbi Haemophilus somnus 23368
HSOM205914 ncbi Haemophilus somnus 129PT8
HINF374930 ncbi Haemophilus influenzae PittEE8
HHAL349124 ncbi Halorhodospira halophila SL19
HCHE349521 ncbi Hahella chejuensis KCTC 23969
HARS204773 ncbi Herminiimonas arsenicoxydans9
GURA351605 ncbi Geobacter uraniireducens Rf49
GSUL243231 ncbi Geobacter sulfurreducens PCA9
GMET269799 ncbi Geobacter metallireducens GS-159
ESP42895 Enterobacter sp.9
EFER585054 ncbi Escherichia fergusonii ATCC 354699
ECOO157 ncbi Escherichia coli O157:H7 EDL9339
ECOL83334 Escherichia coli O157:H79
ECOL585397 ncbi Escherichia coli ED1a9
ECOL585057 ncbi Escherichia coli IAI399
ECOL585056 ncbi Escherichia coli UMN0269
ECOL585055 ncbi Escherichia coli 559899
ECOL585035 ncbi Escherichia coli S889
ECOL585034 ncbi Escherichia coli IAI19
ECOL481805 ncbi Escherichia coli ATCC 87399
ECOL469008 ncbi Escherichia coli BL21(DE3)9
ECOL439855 ncbi Escherichia coli SMS-3-59
ECOL413997 ncbi Escherichia coli B str. REL6069
ECOL409438 ncbi Escherichia coli SE119
ECOL405955 ncbi Escherichia coli APEC O19
ECOL364106 ncbi Escherichia coli UTI899
ECOL362663 ncbi Escherichia coli 5369
ECOL331111 ncbi Escherichia coli E24377A9
ECOL316407 ncbi Escherichia coli K-12 substr. W31109
ECOL199310 ncbi Escherichia coli CFT0739
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10439
DSHI398580 ncbi Dinoroseobacter shibae DFL 128
DOLE96561 ncbi Desulfococcus oleovorans Hxd38
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G208
DARO159087 ncbi Dechloromonas aromatica RCB9
CVIO243365 ncbi Chromobacterium violaceum ATCC 124729
CSP501479 Citreicella sp. SE458
CSAL290398 ncbi Chromohalobacter salexigens DSM 30439
CPSY167879 ncbi Colwellia psychrerythraea 34H9
CJAP155077 Cellvibrio japonicus9
BVIE269482 ncbi Burkholderia vietnamiensis G49
BTHA271848 ncbi Burkholderia thailandensis E2649
BSP36773 Burkholderia sp.9
BPSE320373 ncbi Burkholderia pseudomallei 6688
BPSE320372 ncbi Burkholderia pseudomallei 1710b9
BPSE272560 ncbi Burkholderia pseudomallei K962439
BPET94624 Bordetella petrii8
BPAR257311 ncbi Bordetella parapertussis 128228
BMAL320389 ncbi Burkholderia mallei NCTC 102479
BMAL320388 ncbi Burkholderia mallei SAVP19
BMAL243160 ncbi Burkholderia mallei ATCC 233449
BCEN331272 ncbi Burkholderia cenocepacia HI24249
BCEN331271 ncbi Burkholderia cenocepacia AU 10549
BBRO257310 ncbi Bordetella bronchiseptica RB508
BAMB398577 ncbi Burkholderia ambifaria MC40-69
BAMB339670 ncbi Burkholderia ambifaria AMMD9
ASP76114 ncbi Aromatoleum aromaticum EbN19
ASP62977 ncbi Acinetobacter sp. ADP18
ASP62928 ncbi Azoarcus sp. BH729
ASP232721 ncbi Acidovorax sp. JS428
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4499
AHYD196024 Aeromonas hydrophila dhakensis9
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232709
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-19
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C8
ABOR393595 ncbi Alcanivorax borkumensis SK29
ABAU360910 ncbi Bordetella avium 197N8
AAVE397945 ncbi Acidovorax citrulli AAC00-19


Names of the homologs of the genes in the group in each of these orgs
  G7665   G7663   G7662   EG12146   EG11682   EG11681   EG11680   EG10973   EG10898   
YPSE349747 YPSIP31758_0443YPSIP31758_0445YPSIP31758_0446YPSIP31758_0438YPSIP31758_0439YPSIP31758_0440YPSIP31758_0442YPSIP31758_0446YPSIP31758_0441
YPSE273123 YPTB3524YPTB3522YPTB3521YPTB3529YPTB3528YPTB3527YPTB3525YPTB3521YPTB3526
YPES386656 YPDSF_0317YPDSF_0319YPDSF_0320YPDSF_0311YPDSF_0312YPDSF_0313YPDSF_0316YPDSF_0320YPDSF_0315
YPES377628 YPN_3462YPN_3460YPN_3459YPN_3468YPN_3467YPN_3466YPN_3463YPN_3459YPN_3464
YPES360102 YPA_3723YPA_3725YPA_3726YPA_3717YPA_3718YPA_3719YPA_3722YPA_3726YPA_3721
YPES349746 YPANGOLA_A1151YPANGOLA_A1149YPANGOLA_A1148YPANGOLA_A1156YPANGOLA_A1155YPANGOLA_A1154YPANGOLA_A1152YPANGOLA_A1148YPANGOLA_A1153
YPES214092 YPO3580YPO3578YPO3577YPO3586YPO3585YPO3279YPO3581YPO3577YPO3582
YPES187410 Y0152Y0150Y0149Y0158Y0157Y0156Y0153Y0149Y0154
YENT393305 YE3757YE3755YE3754YE3762YE3761YE3760YE3758YE1092YE3759
XORY360094 XOOORF_4032XOOORF_4030XOOORF_4029XOOORF_4038XOOORF_4036XOOORF_4035XOOORF_4033XOOORF_4029XOOORF_4034
XORY342109 XOO1185XOO1187XOO1188XOO1179XOO1181XOO1182XOO1184XOO1188XOO1183
XORY291331 XOO1286XOO1288XOO1289XOO1280XOO1282XOO1283XOO1285XOO1289XOO1284
XFAS405440 XFASM12_0758XFASM12_0760XFASM12_0761XFASM12_0753XFASM12_0755XFASM12_0757XFASM12_0761XFASM12_0756
XFAS183190 PD_0639PD_0641PD_0642PD_0634PD_0636PD_0638PD_0642PD_0637
XFAS160492 XF1410XF1412XF1413XF1405XF1407XF1409XF1413XF1408
XCAM487884 XCC-B100_1360XCC-B100_1362XCC-B100_1363XCC-B100_1354XCC-B100_1356XCC-B100_1357XCC-B100_1359XCC-B100_1363XCC-B100_1358
XCAM316273 XCAORF_3171XCAORF_3169XCAORF_3168XCAORF_3177XCAORF_3175XCAORF_3174XCAORF_3172XCAORF_3168XCAORF_3173
XCAM314565 XC_1313XC_1315XC_1316XC_1307XC_1309XC_1310XC_1312XC_1316XC_1311
XCAM190485 XCC2800XCC2798XCC2797XCC2806XCC2804XCC2803XCC2801XCC2797XCC2802
XAXO190486 XAC2970XAC2968XAC2967XAC2976XAC2974XAC2973XAC2971XAC2967XAC2972
VVUL216895 VV1_0690VV1_0688VV1_0687VV1_0695VV1_0694VV1_0693VV1_0691VV1_0687VV1_0692
VVUL196600 VV0450VV0452VV0453VV0445VV0446VV0447VV0449VV0453VV0448
VPAR223926 VP2668VP2666VP2673VP2672VP2671VP2669VP2666VP2670
VFIS312309 VF0389VF0391VF0392VF0384VF0385VF0386VF0388VF0392VF0387
VEIS391735 VEIS_0576VEIS_0153VEIS_0154VEIS_1053VEIS_0601VEIS_0600VEIS_0577VEIS_0154VEIS_0578
VCHO345073 VC0395_A2107VC0395_A2105VC0395_A2104VC0395_A2112VC0395_A2111VC0395_A2110VC0395_A2108VC0395_A2104VC0395_A2109
VCHO VC2527VC2524VC2523VC2532VC2531VC2530VC2528VC2523VC2529
TTUR377629 TERTU_3819TERTU_3817TERTU_3816TERTU_3824TERTU_3823TERTU_3543TERTU_3820TERTU_3816TERTU_3821
TDEN292415 TBD_0535TBD_0537TBD_0538TBD_0529TBD_0531TBD_0532TBD_0534TBD_0538TBD_0533
STYP99287 STM3318STM3316STM3315STM3323STM3322STM3321STM3319STM2838STM3320
SSP94122 SHEWANA3_0674SHEWANA3_0676SHEWANA3_0677SHEWANA3_0669SHEWANA3_0670SHEWANA3_0671SHEWANA3_0673SHEWANA3_0677SHEWANA3_0672
SSON300269 SSO_3348SSO_3346SSO_3345SSO_3353SSO_3352SSO_3351SSO_3349SSO_2852SSO_3350
SSED425104 SSED_0728SSED_0730SSED_0731SSED_0723SSED_0724SSED_0725SSED_0727SSED_0731SSED_0726
SPRO399741 SPRO_4365SPRO_4363SPRO_4362SPRO_4370SPRO_4369SPRO_4368SPRO_4366SPRO_3575SPRO_4367
SPEA398579 SPEA_3614SPEA_3612SPEA_3611SPEA_3618SPEA_3617SPEA_3615SPEA_3611SPEA_3616
SONE211586 SO_3959SO_3957SO_3956SO_3964SO_3963SO_3962SO_3960SO_3956SO_3961
SLOI323850 SHEW_3309SHEW_3307SHEW_3306SHEW_3314SHEW_3313SHEW_3312SHEW_3310SHEW_3306SHEW_3311
SHIGELLA YHBNYRBIYRBHYHBJPTSNYHBHYHBGGUTQRPON
SHAL458817 SHAL_3703SHAL_3701SHAL_3700SHAL_3708SHAL_3707SHAL_3706SHAL_3704SHAL_3700SHAL_3705
SGLO343509 SG0201SG0203SG0204SG0196SG0197SG0198SG0200SG0204SG0199
SFUM335543 SFUM_2073SFUM_0006SFUM_2066SFUM_2067SFUM_2068SFUM_2070SFUM_0006SFUM_2069
SFLE373384 SFV_3230SFV_3228SFV_3227SFV_3235SFV_3234SFV_3233SFV_3231SFV_2797SFV_3232
SFLE198214 AAN44706.1AAN44704.1AAN44703.1AAN44711.1AAN44710.1AAN44709.1AAN44707.1AAN44222.1AAN44708.1
SENT454169 SEHA_C3615SEHA_C3613SEHA_C3612SEHA_C3620SEHA_C3619SEHA_C3618SEHA_C3616SEHA_C3024SEHA_C3617
SENT321314 SCH_3256SCH_3254SCH_3253SCH_3261SCH_3260SCH_3259SCH_3257SCH_2771SCH_3258
SENT295319 SPA3185SPA3183SPA3182SPA3190SPA3189SPA3188SPA3186SPA2696SPA3187
SENT220341 STY3497STY3495STY3494STY3502STY3501STY3500STY3498STY2960STY3499
SENT209261 T3235T3233T3232T3240T3239T3238T3236T2740T3237
SDYS300267 SDY_3381SDY_3379SDY_3378SDY_3386SDY_3385SDY_3384SDY_3382SDY_2905SDY_3383
SDEN318161 SDEN_0491SDEN_0493SDEN_0494SDEN_0486SDEN_0487SDEN_0488SDEN_0490SDEN_0494SDEN_0489
SDEG203122 SDE_3177SDE_3175SDE_3174SDE_3181SDE_3180SDE_0532SDE_3178SDE_3174SDE_3179
SBOY300268 SBO_3182SBO_3184SBO_3185SBO_3177SBO_3178SBO_2635SBO_3181SBO_2810SBO_3180
SBAL402882 SHEW185_0688SHEW185_0690SHEW185_0691SHEW185_0683SHEW185_0684SHEW185_0685SHEW185_0687SHEW185_0691SHEW185_0686
SBAL399599 SBAL195_0718SBAL195_0720SBAL195_0721SBAL195_0713SBAL195_0714SBAL195_0715SBAL195_0717SBAL195_0721SBAL195_0716
SACI56780 SYN_00947SYN_00949SYN_00471SYN_00941SYN_00943SYN_00944SYN_00946SYN_00471SYN_00945
RSOL267608 RSC0410RSC0412RSC0413RSC0403RSC0406RSC0407RSC0409RSC0413RSC0408
RMET266264 RMET_0305RMET_0307RMET_0297RMET_0300RMET_0302RMET_0304RMET_0307RMET_0303
RFER338969 RFER_4236RFER_4237RFER_1653RFER_0751RFER_0750RFER_0777RFER_4237RFER_0778
REUT381666 H16_A0389H16_A0391H16_A0381H16_A0384H16_A0386H16_A0388H16_A0391H16_A0387
REUT264198 REUT_A0357REUT_A0359REUT_A0350REUT_A0353REUT_A0354REUT_A0356REUT_A0359REUT_A0355
PSYR223283 PSPTO_4451PSPTO_4449PSPTO_4448PSPTO_4456PSPTO_4455PSPTO_4454PSPTO_4452PSPTO_4448PSPTO_4453
PSYR205918 PSYR_4145PSYR_4143PSYR_4142PSYR_4150PSYR_4149PSYR_4148PSYR_4146PSYR_4142PSYR_4147
PSTU379731 PST_1033PST_1035PST_1036PST_1028PST_1029PST_1030PST_1032PST_1036PST_1031
PSP56811 PSYCPRWF_0825PSYCPRWF_0823PSYCPRWF_0822PSYCPRWF_2129PSYCPRWF_0353PSYCPRWF_0826PSYCPRWF_0822PSYCPRWF_0352
PSP296591 BPRO_4487BPRO_4897BPRO_4898BPRO_1300BPRO_4612BPRO_4613BPRO_4486BPRO_4898BPRO_4485
PPUT76869 PPUTGB1_0961PPUTGB1_0963PPUTGB1_0964PPUTGB1_0956PPUTGB1_0957PPUTGB1_0958PPUTGB1_0960PPUTGB1_0964PPUTGB1_0959
PPUT351746 PPUT_0993PPUT_0995PPUT_0996PPUT_0988PPUT_0989PPUT_0990PPUT_0992PPUT_0996PPUT_0991
PPUT160488 PP_0954PP_0956PP_0957PP_0949PP_0950PP_0951PP_0953PP_0957PP_0952
PPRO298386 PBPRA3253PBPRA3251PBPRA3250PBPRA3258PBPRA3257PBPRA3256PBPRA3254PBPRA3250PBPRA3255
PNAP365044 PNAP_3708PNAP_4107PNAP_4108PNAP_0906PNAP_3793PNAP_3794PNAP_3709PNAP_4108PNAP_3710
PMUL272843 PM0172PM0524PM0525PM0169PM0170PM0092PM0171PM0525
PMEN399739 PMEN_0872PMEN_0874PMEN_0875PMEN_0867PMEN_0868PMEN_0869PMEN_0871PMEN_0875PMEN_0870
PLUM243265 PLU4039PLU4037PLU4036PLU4044PLU4043PLU4042PLU4040PLU4036PLU4041
PING357804 PING_2890PING_2888PING_0617PING_2894PING_2893PING_0288PING_2891PING_0617PING_2892
PHAL326442 PSHAA2549PSHAA2547PSHAA2546PSHAA2554PSHAA2553PSHAA2552PSHAA2550PSHAA2546PSHAA2551
PFLU220664 PFL_0917PFL_0919PFL_0920PFL_0912PFL_0913PFL_0914PFL_0916PFL_0920PFL_0915
PFLU216595 PFLU0884PFLU0886PFLU0887PFLU0879PFLU0880PFLU0881PFLU0883PFLU0887PFLU0882
PFLU205922 PFL_0859PFL_0861PFL_0862PFL_0854PFL_0855PFL_0856PFL_0858PFL_0862PFL_0857
PENT384676 PSEEN1095PSEEN1097PSEEN1098PSEEN1090PSEEN1091PSEEN1092PSEEN1094PSEEN1098PSEEN1093
PCRY335284 PCRYO_1489PCRYO_1491PCRYO_1492PCRYO_0127PCRYO_0224PCRYO_1488PCRYO_1492PCRYO_0223
PCAR338963 PCAR_1940PCAR_1942PCAR_1943PCAR_1935PCAR_1936PCAR_1937PCAR_1939PCAR_1943PCAR_1938
PATL342610 PATL_0566PATL_0564PATL_0563PATL_0571PATL_0570PATL_0569PATL_0567PATL_0563PATL_0568
PARC259536 PSYC_0925PSYC_0923PSYC_0922PSYC_0118PSYC_0204PSYC_0926PSYC_0922PSYC_0203
PAER208964 PA4460PA4458PA4457PA4465PA4464PA4463PA4461PA4457PA4462
PAER208963 PA14_57920PA14_57900PA14_57890PA14_57970PA14_57960PA14_57950PA14_57930PA14_57890PA14_57940
NOCE323261 NOC_2791NOC_2789NOC_2788NOC_2797NOC_2795NOC_2794NOC_2792NOC_2788NOC_2793
NMEN272831 NMC1813NMC1815NMC1816NMC0691NMC0689NMC1812NMC1816NMC0212
NMEN122587 NMA2132NMA2134NMA2135NMA0948NMA0946NMA2131NMA2135NMA0049
NMEN122586 NMB_0355NMB_0353NMB_0352NMB_0738NMB_0736NMB_0356NMB_0352NMB_0217
MXAN246197 MXAN_1094MXAN_5923MXAN_6564MXAN_1066MXAN_1065MXAN_1060MXAN_5923MXAN_1061
MSUC221988 MS1715MS0995MS0996MS1718MS1717MS0352MS1716MS0996
MSP400668 MMWYL1_2416MMWYL1_1125MMWYL1_1123MMWYL1_2419MMWYL1_3245MMWYL1_2417MMWYL1_1123MMWYL1_2418
MPET420662 MPE_A0150MPE_A3808MPE_A3809MPE_A3336MPE_A0225MPE_A0226MPE_A0149MPE_A3809MPE_A0148
MFLA265072 MFLA_0140MFLA_0138MFLA_0137MFLA_0145MFLA_0143MFLA_0141MFLA_0137MFLA_0142
MCAP243233 MCA_0743MCA_0745MCA_0746MCA_0739MCA_0740MCA_0742MCA_0746MCA_0741
MAQU351348 MAQU_2713MAQU_2711MAQU_2710MAQU_2718MAQU_2717MAQU_2716MAQU_2714MAQU_2710MAQU_2715
LCHO395495 LCHO_4227LCHO_0183LCHO_0182LCHO_3490LCHO_0472LCHO_0471LCHO_4226LCHO_0182LCHO_4225
KPNE272620 GKPORF_B2945GKPORF_B2943GKPORF_B2942GKPORF_B2950GKPORF_B2949GKPORF_B2948GKPORF_B2946GKPORF_B2372GKPORF_B2947
JSP375286 MMA_3350MMA_3348MMA_3347MMA_3120MMA_3118MMA_3353MMA_3351MMA_3347MMA_3352
ILOI283942 IL0398IL0400IL0401IL0393IL0394IL0395IL0397IL0401IL0396
HSOM228400 HSM_1592HSM_1397HSM_1396HSM_1595HSM_1594HSM_0761HSM_1593HSM_1396
HSOM205914 HS_1175HS_0919HS_0918HS_1178HS_1177HS_0462HS_1176HS_0918
HINF374930 CGSHIEE_06300CGSHIEE_03665CGSHIEE_03670CGSHIEE_06315CGSHIEE_06310CGSHIEE_01780CGSHIEE_06305CGSHIEE_03670
HHAL349124 HHAL_2124HHAL_2122HHAL_2121HHAL_2130HHAL_2128HHAL_2127HHAL_2125HHAL_2121HHAL_2126
HCHE349521 HCH_05318HCH_05316HCH_05315HCH_05324HCH_05323HCH_05322HCH_05319HCH_05315HCH_05320
HARS204773 HEAR3107HEAR3105HEAR3104HEAR2885HEAR2883HEAR3110HEAR3108HEAR3104HEAR3109
GURA351605 GURA_2974GURA_2976GURA_2977GURA_2968GURA_0893GURA_2971GURA_2973GURA_2977GURA_2972
GSUL243231 GSU_1889GSU_1892GSU_1893GSU_1884GSU_0735GSU_1886GSU_1888GSU_1893GSU_1887
GMET269799 GMET_1281GMET_1279GMET_1278GMET_1286GMET_2604GMET_1284GMET_1282GMET_1278GMET_1283
ESP42895 ENT638_3636ENT638_3634ENT638_3633ENT638_3641ENT638_3640ENT638_3639ENT638_3637ENT638_3180ENT638_3638
EFER585054 EFER_3177EFER_3175EFER_3174EFER_3182EFER_3181EFER_3180EFER_3178EFER_0370EFER_3179
ECOO157 YHBNYRBIYRBHYHBJPTSNYHBHYHBGGUTQRPON
ECOL83334 ECS4079ECS4077ECS4076ECS4084ECS4083ECS4082ECS4080ECS3564ECS4081
ECOL585397 ECED1_3858ECED1_3856ECED1_3855ECED1_3863ECED1_3862ECED1_3861ECED1_3859ECED1_3157ECED1_3860
ECOL585057 ECIAI39_3695ECIAI39_3693ECIAI39_3692ECIAI39_3700ECIAI39_3699ECIAI39_3698ECIAI39_3696ECIAI39_2894ECIAI39_3697
ECOL585056 ECUMN_3680ECUMN_3678ECUMN_3677ECUMN_3685ECUMN_3684ECUMN_3683ECUMN_3681ECUMN_3029ECUMN_3682
ECOL585055 EC55989_3618EC55989_3616EC55989_3615EC55989_3623EC55989_3622EC55989_3621EC55989_3619EC55989_2970EC55989_3620
ECOL585035 ECS88_3583ECS88_3581ECS88_3580ECS88_3588ECS88_3587ECS88_3586ECS88_3584ECS88_2971ECS88_3585
ECOL585034 ECIAI1_3348ECIAI1_3346ECIAI1_3345ECIAI1_3353ECIAI1_3352ECIAI1_3351ECIAI1_3349ECIAI1_2800ECIAI1_3350
ECOL481805 ECOLC_0500ECOLC_0502ECOLC_0503ECOLC_0495ECOLC_0496ECOLC_0497ECOLC_0499ECOLC_1004ECOLC_0498
ECOL469008 ECBD_0542ECBD_0544ECBD_0545ECBD_0537ECBD_0538ECBD_0539ECBD_0541ECBD_1017ECBD_0540
ECOL439855 ECSMS35_3496ECSMS35_3494ECSMS35_3493ECSMS35_3501ECSMS35_3500ECSMS35_3499ECSMS35_3497ECSMS35_2832ECSMS35_3498
ECOL413997 ECB_03065ECB_03063ECB_03062ECB_03070ECB_03069ECB_03068ECB_03066ECB_02558ECB_03067
ECOL409438 ECSE_3484ECSE_3482ECSE_3481ECSE_3489ECSE_3488ECSE_3487ECSE_3485ECSE_2956ECSE_3486
ECOL405955 APECO1_3235APECO1_3237APECO1_3238APECO1_3230APECO1_3231APECO1_3232APECO1_3234APECO1_3818APECO1_3233
ECOL364106 UTI89_C3636UTI89_C3634UTI89_C3633UTI89_C3641UTI89_C3640UTI89_C3639UTI89_C3637UTI89_C3070UTI89_C3638
ECOL362663 ECP_3288ECP_3286ECP_3285ECP_3293ECP_3292ECP_3291ECP_3289ECP_2668ECP_3290
ECOL331111 ECE24377A_3688ECE24377A_3686ECE24377A_3685ECE24377A_3693ECE24377A_3692ECE24377A_3691ECE24377A_3689ECE24377A_2993ECE24377A_3690
ECOL316407 ECK3189:JW3167:B3200ECK3187:JW3165:B3198ECK3186:JW3164:B3197ECK3194:JW3172:B3205ECK3193:JW3171:B3204ECK3192:JW3170:B3203ECK3190:JW3168:B3201ECK2703:JW5431:B2708ECK3191:JW3169:B3202
ECOL199310 C3960C3958C3957C3965C3964C3963C3961C3262C3962
ECAR218491 ECA0290ECA0292ECA0293ECA0285ECA0286ECA0287ECA0289ECA0293ECA0288
DSHI398580 DSHI_3586DSHI_3588DSHI_0209DSHI_3582DSHI_3583DSHI_3585DSHI_3588DSHI_3584
DOLE96561 DOLE_0510DOLE_2110DOLE_0503DOLE_0504DOLE_0505DOLE_0507DOLE_2110DOLE_0506
DDES207559 DDE_1767DDE_0335DDE_1774DDE_1773DDE_1772DDE_1770DDE_0335DDE_1771
DARO159087 DARO_3421DARO_3419DARO_3418DARO_0070DARO_4147DARO_4148DARO_4150DARO_3418DARO_4149
CVIO243365 CV_3330CV_3328CV_3327CV_3336CV_3334CV_3333CV_3331CV_3327CV_3332
CSP501479 CSE45_3596CSE45_5498CSE45_3334CSE45_4173CSE45_3593CSE45_3595CSE45_3334CSE45_0512
CSAL290398 CSAL_2224CSAL_2222CSAL_2221CSAL_2229CSAL_2228CSAL_2227CSAL_2225CSAL_2221CSAL_2226
CPSY167879 CPS_4541CPS_4539CPS_4538CPS_4546CPS_4545CPS_4544CPS_4542CPS_4538CPS_4543
CJAP155077 CJA_2803CJA_2801CJA_2800CJA_2809CJA_2808CJA_2807CJA_2804CJA_2800CJA_2806
BVIE269482 BCEP1808_2894BCEP1808_2892BCEP1808_2891BCEP1808_2900BCEP1808_2898BCEP1808_2897BCEP1808_2895BCEP1808_2891BCEP1808_2896
BTHA271848 BTH_I0488BTH_I0490BTH_I0491BTH_I0482BTH_I0484BTH_I0485BTH_I0487BTH_I0491BTH_I0486
BSP36773 BCEP18194_A6119BCEP18194_A6117BCEP18194_A6116BCEP18194_A6125BCEP18194_A6123BCEP18194_A6122BCEP18194_A6120BCEP18194_A6116BCEP18194_A6121
BPSE320373 BURPS668_0583BURPS668_0585BURPS668_0586BURPS668_0577BURPS668_0579BURPS668_0582BURPS668_0586BURPS668_0581
BPSE320372 BURPS1710B_A0809BURPS1710B_A0811BURPS1710B_A0812BURPS1710B_A0803BURPS1710B_A0805BURPS1710B_A0806BURPS1710B_A0808BURPS1710B_A0812BURPS1710B_A0807
BPSE272560 BPSL0535BPSL0537BPSL0538BPSL0529BPSL0531BPSL0532BPSL0534BPSL0538BPSL0533
BPET94624 BPET0452BPET0453BPET0443BPET0447BPET0448BPET0449BPET0453BPET0085
BPAR257311 BPP4029BPP4028BPP4038BPP4034BPP4033BPP4032BPP4028BPP4336
BMAL320389 BMA10247_2944BMA10247_2946BMA10247_2947BMA10247_2938BMA10247_2940BMA10247_2941BMA10247_2943BMA10247_2947BMA10247_2942
BMAL320388 BMASAVP1_A0074BMASAVP1_A0072BMASAVP1_A0071BMASAVP1_A0080BMASAVP1_A0078BMASAVP1_A0077BMASAVP1_A0075BMASAVP1_A0071BMASAVP1_A0076
BMAL243160 BMA_3105BMA_3103BMA_3102BMA_3112BMA_3110BMA_3109BMA_3107BMA_3102BMA_3108
BCEN331272 BCEN2424_2789BCEN2424_2787BCEN2424_2786BCEN2424_2795BCEN2424_2793BCEN2424_2792BCEN2424_2790BCEN2424_2786BCEN2424_2791
BCEN331271 BCEN_2175BCEN_2173BCEN_2172BCEN_2181BCEN_2179BCEN_2178BCEN_2176BCEN_2172BCEN_2177
BBRO257310 BB4502BB4501BB4511BB4507BB4506BB4505BB4501BB4922
BAMB398577 BAMMC406_2707BAMMC406_2705BAMMC406_2704BAMMC406_2713BAMMC406_2711BAMMC406_2710BAMMC406_2708BAMMC406_2704BAMMC406_2709
BAMB339670 BAMB_2849BAMB_2847BAMB_2846BAMB_2855BAMB_2853BAMB_2852BAMB_2850BAMB_2846BAMB_2851
ASP76114 EBA1320EBA1316EBA1315EBA3650EBA3391EBB108EBA3394EBA1315EBA3393
ASP62977 ACIAD1485ACIAD1483ACIAD1482ACIAD3059ACIAD0658ACIAD1486ACIAD1482ACIAD0657
ASP62928 AZO0791AZO0793AZO0794AZO0399AZO0502AZO0503AZO0505AZO0794AZO0504
ASP232721 AJS_4131AJS_4132AJS_0902AJS_3926AJS_3927AJS_0347AJS_4132AJS_0348
ASAL382245 ASA_0313ASA_0311ASA_0310ASA_0318ASA_0317ASA_0316ASA_0314ASA_0310ASA_0315
AHYD196024 AHA_3925AHA_3927AHA_3928AHA_3920AHA_3921AHA_3922AHA_3924AHA_3928AHA_3923
AFER243159 AFE_0083AFE_0081AFE_0080AFE_0089AFE_0087AFE_0086AFE_0084AFE_0080AFE_0085
AEHR187272 MLG_2228MLG_2226MLG_2225MLG_2233MLG_2232MLG_2231MLG_2229MLG_2225MLG_2230
ADEH290397 ADEH_4172ADEH_4064ADEH_0147ADEH_4165ADEH_4166ADEH_4168ADEH_4064ADEH_4167
ABOR393595 ABO_0554ABO_0556ABO_0557ABO_0549ABO_0550ABO_0551ABO_0553ABO_0557ABO_0552
ABAU360910 BAV3115BAV3114BAV3158BAV3156BAV3155BAV3118BAV3114BAV3349
AAVE397945 AAVE_0417AAVE_4784AAVE_4785AAVE_3603AAVE_4557AAVE_4558AAVE_0418AAVE_4785AAVE_0419


Organism features enriched in list (features available for 159 out of the 168 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 1.674e-6892
Arrangment:Pairs 0.002736542112
Disease:Bubonic_plague 0.000383866
Disease:Dysentery 0.000383866
Disease:Gastroenteritis 0.00021321013
Endospores:No 5.651e-733211
Endospores:Yes 4.489e-6253
GC_Content_Range4:0-40 2.248e-305213
GC_Content_Range4:40-60 1.885e-1298224
GC_Content_Range4:60-100 0.000205756145
GC_Content_Range7:30-40 8.780e-215166
GC_Content_Range7:50-60 5.764e-1462107
GC_Content_Range7:60-70 0.000031955134
Genome_Size_Range5:0-2 1.841e-241155
Genome_Size_Range5:2-4 2.181e-631197
Genome_Size_Range5:4-6 5.049e-25103184
Genome_Size_Range5:6-10 0.00017932447
Genome_Size_Range9:1-2 2.351e-191128
Genome_Size_Range9:2-3 0.000029516120
Genome_Size_Range9:4-5 2.240e-95196
Genome_Size_Range9:5-6 5.249e-125288
Genome_Size_Range9:6-8 0.00002952238
Gram_Stain:Gram_Neg 1.260e-28146333
Habitat:Multiple 0.008870059178
Habitat:Specialized 0.0059774753
Motility:No 2.273e-915151
Motility:Yes 7.952e-12109267
Optimal_temp.:35-37 0.0074891813
Oxygen_Req:Anaerobic 1.921e-610102
Oxygen_Req:Facultative 8.536e-882201
Pathogenic_in:No 0.001470347226
Pathogenic_in:Plant 0.00019681115
Shape:Coccus 0.0000241882
Shape:Rod 7.623e-19139347
Shape:Spiral 0.0001880134
Temp._range:Mesophilic 0.0006044142473
Temp._range:Psychrophilic 0.000178289
Temp._range:Thermophilic 0.0001378135



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 123
Effective number of orgs (counting one per cluster within 468 clusters): 111

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I1
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TROS309801 ncbi Thermomicrobium roseum DSM 51590
TPEN368408 ncbi Thermofilum pendens Hrk 50
TMAR243274 ncbi Thermotoga maritima MSB81
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
STRO369723 ncbi Salinispora tropica CNB-4401
STOK273063 ncbi Sulfolobus tokodaii 71
SSOL273057 ncbi Sulfolobus solfataricus P21
SMAR399550 ncbi Staphylothermus marinus F10
SARE391037 ncbi Salinispora arenicola CNS-2051
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RSP357808 ncbi Roseiflexus sp. RS-10
RSP101510 ncbi Rhodococcus jostii RHA11
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332091
RCAS383372 ncbi Roseiflexus castenholzii DSM 139411
RALB246199 Ruminococcus albus 81
PTOR263820 ncbi Picrophilus torridus DSM 97900
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PHOR70601 ncbi Pyrococcus horikoshii OT30
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PAER178306 ncbi Pyrobaculum aerophilum IM20
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
NFAR247156 ncbi Nocardia farcinica IFM 101521
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-11
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra1
MTUB336982 ncbi Mycobacterium tuberculosis F111
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H1
MTBRV ncbi Mycobacterium tuberculosis H37Rv1
MTBCDC ncbi Mycobacterium tuberculosis CDC15511
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSP164757 ncbi Mycobacterium sp. JLS1
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-21
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG11
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MLEP272631 ncbi Mycobacterium leprae TN1
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK1
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L11
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273431
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P21
MBOV233413 ncbi Mycobacterium bovis AF2122/971
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MAVI243243 ncbi Mycobacterium avium 1041
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A1
MABS561007 ncbi Mycobacterium abscessus ATCC 199771
LXYL281090 ncbi Leifsonia xyli xyli CTCB071
KRAD266940 ncbi Kineococcus radiotolerans SRS302161
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSAL478009 ncbi Halobacterium salinarum R10
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
FSP1855 Frankia sp. EAN1pec1
FSP106370 ncbi Frankia sp. CcI31
FALN326424 ncbi Frankia alni ACN14a1
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DSP255470 ncbi Dehalococcoides sp. CBDB10
DSP216389 ncbi Dehalococcoides sp. BAV10
DETH243164 ncbi Dehalococcoides ethenogenes 1950
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3821
CMIC31964 ncbi Clavibacter michiganensis sepedonicus1
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF81
CJEI306537 ncbi Corynebacterium jeikeium K4111
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130321
CEFF196164 ncbi Corynebacterium efficiens YS-3141
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131291
BXEN266265 ncbi Burkholderia xenovorans LB4001
BTUR314724 ncbi Borrelia turicatae 91E1351
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)0
BHER314723 ncbi Borrelia hermsii DAH1
BCIC186490 Candidatus Baumannia cicadellinicola1
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP1667 Arthrobacter sp.1
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K10
ANAE240017 Actinomyces oris MG11
AMAR234826 ncbi Anaplasma marginale St. Maries0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040


Names of the homologs of the genes in the group in each of these orgs
  G7665   G7663   G7662   EG12146   EG11682   EG11681   EG11680   EG10973   EG10898   
WPIP955
WPIP80849
UURE95667
UURE95664
UPAR505682
UMET351160 RCIX953
TWHI218496
TWHI203267
TVOL273116
TROS309801
TPEN368408
TMAR243274 TM_1054
TKOD69014
TACI273075
STRO369723 STROP_3101
STOK273063 ST1422
SSOL273057 SSO0094
SMAR399550
SARE391037 SARE_3328
SACI330779
RSP357808
RSP101510 RHA1_RO07174
RSAL288705 RSAL33209_2275
RCAS383372 RCAS_2299
RALB246199 GRAORF_1682
PTOR263820
PISL384616
PHOR70601
PFUR186497
PAST100379
PARS340102
PAER178306
PABY272844
OTSU357244
NSEN222891
NPHA348780
NFAR247156 NFA35930
MVAN350058 MVAN_2698
MTUB419947 MRA_1430
MTUB336982 TBFG_11450
MTHE349307
MTHE187420 MTH1071
MTBRV RV1421
MTBCDC MT1464
MSYN262723
MSTA339860
MSP164757 MJLS_2437
MSED399549
MPUL272635
MPNE272634
MPEN272633 MYPE7670
MMYC272632 MSC_0842
MMOB267748
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR368407
MMAR267377
MLEP272631 ML0563
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGIL350054 MFLV_3714
MGEN243273
MFLO265311 MFL181
MCAP340047 MCAP_0853
MBUR259564
MBOV410289 BCG_1482
MBOV233413 MB1456
MBAR269797
MAVI243243 MAV_3359
MART243272
MAEO419665
MACE188937 MA3766
MABS561007 MAB_2783C
LXYL281090 LXX11490
KRAD266940 KRAD_2934
IHOS453591
HWAL362976
HSP64091
HSAL478009
HMUK485914
HBUT415426
FSP1855 FRANEAN1_2060
FSP106370 FRANCCI3_1634
FALN326424 FRAAL4592
ERUM302409
ERUM254945
ECHA205920
ECAN269484
DSP255470
DSP216389
DETH243164
CSUL444179
CMIC443906 CMM_1747
CMIC31964 CMS1991
CMET456442
CMAQ397948
CKOR374847 KCR_1255
CJEI306537 JK1004
CGLU196627 CG1794
CEFF196164 CE1710
CDIP257309 DIP1313
BXEN266265 BXE_B1172
BTUR314724 BT0466
BSP107806
BHER314723 BH0466
BCIC186490 BCI_0034
BAPH372461
BAPH198804
AYEL322098
AURANTIMONAS
ASP1667 ARTH_2083
APHA212042
APER272557
ANAE240017 ANA_0711
AMAR234826
AFUL224325


Organism features enriched in list (features available for 112 out of the 123 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 1.339e-6392
Arrangment:Pairs 0.003554712112
Arrangment:Singles 0.000026074286
Disease:Tuberculosis 0.006936933
Endospores:No 2.020e-1780211
Endospores:Yes 0.0029088353
GC_Content_Range7:0-30 1.047e-62347
GC_Content_Range7:30-40 0.000148617166
GC_Content_Range7:70-100 0.0075081611
Genome_Size_Range5:0-2 1.102e-1058155
Genome_Size_Range5:4-6 0.000061519184
Genome_Size_Range9:0-1 1.789e-112127
Genome_Size_Range9:1-2 0.000921537128
Genome_Size_Range9:4-5 0.0023872996
Gram_Stain:Gram_Neg 3.919e-1330333
Habitat:Multiple 0.000060418178
Habitat:Specialized 0.00004922253
Motility:No 7.594e-750151
Motility:Yes 0.000853437267
Optimal_temp.:- 0.000774635257
Optimal_temp.:100 0.006936933
Optimal_temp.:35-40 0.006936933
Optimal_temp.:85 0.001303744
Oxygen_Req:Anaerobic 0.000029835102
Oxygen_Req:Facultative 0.000813925201
Pathogenic_in:Animal 0.0099426666
Pathogenic_in:Human 0.000027623213
Pathogenic_in:Ruminant 0.006936933
Shape:Irregular_coccus 2.330e-131717
Shape:Rod 2.050e-1037347
Shape:Sphere 7.634e-101619
Temp._range:Hyperthermophilic 5.278e-101823
Temp._range:Mesophilic 3.331e-771473
Temp._range:Thermophilic 0.00547811335



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ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 4
Effective number of orgs (counting one per cluster within 468 clusters): 4

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
SACI56780 ncbi Syntrophus aciditrophicus SB 0.001825011809
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 23270 0.004345312999
NOCE323261 ncbi Nitrosococcus oceani ATCC 19707 0.007118113729
HHAL349124 ncbi Halorhodospira halophila SL1 0.007501613809


Names of the homologs of the genes in the group in each of these orgs
  G7665   G7663   G7662   EG12146   EG11682   EG11681   EG11680   EG10973   EG10898   
SACI56780 SYN_00947SYN_00949SYN_00471SYN_00941SYN_00943SYN_00944SYN_00946SYN_00471SYN_00945
AFER243159 AFE_0083AFE_0081AFE_0080AFE_0089AFE_0087AFE_0086AFE_0084AFE_0080AFE_0085
NOCE323261 NOC_2791NOC_2789NOC_2788NOC_2797NOC_2795NOC_2794NOC_2792NOC_2788NOC_2793
HHAL349124 HHAL_2124HHAL_2122HHAL_2121HHAL_2130HHAL_2128HHAL_2127HHAL_2125HHAL_2121HHAL_2126


Organism features enriched in list (features available for 4 out of the 4 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  



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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181460.6614
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951370.6584
GLYCOCAT-PWY (glycogen degradation I)2461540.6486
AST-PWY (arginine degradation II (AST pathway))120990.6112
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3001640.6016
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251400.5973
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)1761190.5747
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)1491070.5666
PWY-5918 (heme biosynthesis I)2721510.5663
PWY-1269 (CMP-KDO biosynthesis I)3251650.5601
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2901540.5496
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2911540.5475
ECASYN-PWY (enterobacterial common antigen biosynthesis)1911210.5452
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2961550.5445
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2861520.5435
PWY-4041 (γ-glutamyl cycle)2791480.5293
PWY-5386 (methylglyoxal degradation I)3051550.5264
PWY-5148 (acyl-CoA hydrolysis)2271310.5245
NAGLIPASYN-PWY (lipid IVA biosynthesis)3481650.5183
PWY-5913 (TCA cycle variation IV)3011520.5127
TYRFUMCAT-PWY (tyrosine degradation I)1841140.5104
PWY-5755 (4-hydroxybenzoate biosynthesis II (bacteria and fungi))81690.5071
LIPASYN-PWY (phospholipases)2121230.5025
GLUTATHIONESYN-PWY (glutathione biosynthesis)3391590.4908
GALACTITOLCAT-PWY (galactitol degradation)73630.4871
GLUCONSUPER-PWY (D-gluconate degradation)2291260.4820
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491320.4789
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491320.4789
PWY-5857 (ubiquinone-10 biosynthesis (prokaryotic))1831090.4737
PWY0-541 (cyclopropane fatty acid (CFA) biosynthesis)3001460.4713
PWY0-981 (taurine degradation IV)106770.4660
GLUCARDEG-PWY (D-glucarate degradation I)152950.4549
REDCITCYC (TCA cycle variation II)1741030.4521
PWY-5855 (ubiquinone-7 biosynthesis (prokaryotic))1911090.4510
GDPRHAMSYN-PWY (GDP-D-rhamnose biosynthesis)156960.4503
PWY0-1182 (trehalose degradation II (trehalase))70580.4481
PWY0-845 (superpathway of pyridoxal 5'-phosphate biosynthesis and salvage)3291500.4440
PWY-5856 (ubiquinone-9 biosynthesis (prokaryotic))2551290.4431
PWY-6196 (serine racemization)102720.4349
PWY0-1329 (succinate to cytochrome bo oxidase electron transfer)96690.4319
PWY-3162 (tryptophan degradation V (side chain pathway))94680.4310
SULFATE-CYS-PWY (superpathway of sulfate assimilation and cysteine biosynthesis)3651570.4301
CHOLINE-BETAINE-ANA-PWY (choline degradation I)135850.4266
P601-PWY (D-camphor degradation)95680.4264
BETSYN-PWY (glycine betaine biosynthesis I (Gram-negative bacteria))138860.4249
P184-PWY (protocatechuate degradation I (meta-cleavage pathway))94670.4209
UBISYN-PWY (ubiquinol-8 biosynthesis (prokaryotic))3981630.4192
4AMINOBUTMETAB-PWY (superpathway of 4-aminobutyrate degradation)2121120.4186
P344-PWY (acrylonitrile degradation)2101110.4160
GLUCARGALACTSUPER-PWY (superpathway of D-glucarate and D-galactarate degradation)135830.4091
PWY-5669 (phosphatidylethanolamine biosynthesis I)4161650.4056
PYRIDOXSYN-PWY (pyridoxal 5'-phosphate biosynthesis I)4221660.4039
PWY-5340 (sulfate activation for sulfonation)3851580.4033
PWY-6134 (tyrosine biosynthesis IV)89630.4031
GLYOXYLATE-BYPASS (glyoxylate cycle)169950.4021



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G7663   G7662   EG12146   EG11682   EG11681   EG11680   EG10973   EG10898   
G76650.9997630.9997230.9996230.99970.9996740.9998980.9996550.999775
G76630.9998450.999560.9995660.9996190.9997280.9997910.999641
G76620.999460.9995440.9995690.9996930.9999930.999531
EG121460.9997350.9997250.9996440.9993280.999739
EG116820.999770.9998650.9994290.999801
EG116810.9997350.9994770.999835
EG116800.9996290.999952
EG109730.999412
EG10898



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PAIRWISE BLAST SCORES:

  G7665   G7663   G7662   EG12146   EG11682   EG11681   EG11680   EG10973   EG10898   
G76650.0f0--------
G7663-0.0f0-------
G7662--0.0f0----7.2e-64-
EG12146---0.0f0-----
EG11682----0.0f0----
EG11681-----0.0f0---
EG11680------0.0f0--
EG10973--2.0e-59----0.0f0-
EG10898--------0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- KDO-NAGLIPASYN-PWY (superpathway of KDO2-lipid A biosynthesis) (degree of match pw to cand: 0.187, degree of match cand to pw: 0.333, average score: 0.609)
  Genes in pathway or complex:
             0.8162 0.6435 EG10520 (waaA) KDOTRANS-MONOMER (KDO transferase)
             0.0577 0.0012 EG10545 (lpxA) UDPNACETYLGLUCOSAMACYLTRANS-MONOMER (LpxA)
             0.9434 0.8872 EG10265 (lpxC) UDPACYLGLCNACDEACETYL-MONOMER (UDP-3-O-acyl-N-acetylglucosamine deacetylase)
             0.1122 0.0003 EG10316 (lpxD) UDPHYDROXYMYRGLUCOSAMNACETYLTRANS-MONO (UDP-3-O-[3-hydroxymyristoyl]glucosamine N-acetyltransferase)
             0.0624 0.0031 EG12666 (lpxH) EG12666-MONOMER (UDP-2,3-diacylglucosamine hydrolase)
             0.3324 0.0792 EG11409 (lpxK) TETRAACYLDISACC4KIN-MONOMER (tetraacyldisaccharide 4'-kinase)
             0.0694 0.0003 EG10546 (lpxB) LIPIDADISACCHARIDESYNTH-MONOMER (LpxB)
             0.8139 0.7047 EG10464 (lpxL) LAUROYLACYLTRAN-MONOMER (lauroyl acyltransferase)
             0.9354 0.8955 G7241 (lpxP) PALMITOTRANS-MONOMER (palmitoleoyl acyltransferase)
             0.5918 0.3737 EG10614 (lpxM) MYRISTOYLACYLTRAN-MONOMER (myristoyl-acyl carrier protein (ACP)-dependent acyltransferase)
   *in cand* 0.9996 0.9993 EG10973 (gutQ) EG10973-MONOMER (D-arabinose 5-phosphate isomerase)
   *in cand* 0.9997 0.9995 G7662 (kdsD) G7662-MONOMER (D-arabinose 5-phosphate isomerase)
             0.7758 0.2060 EG10518 (kdsA) KDO-8PSYNTH-MONOMER (3-deoxy-D-manno-octulosonate 8-phosphate synthase)
   *in cand* 0.9997 0.9996 G7663 (kdsC) G7663-MONOMER (3-deoxy-D-manno-octulosonate 8-phosphate phosphatase monomer)
             0.7936 0.3948 EG10519 (kdsB) CPM-KDOSYNTH-MONOMER (3-deoxy-D-manno-octulosonate cytidylyltransferase)
             0.0015 0.0003 EG50003 (acpP) TRANS-DELTA3-CIS-DELTA5-DODECENOYL-ACP (trans-Δ3-cis-Δ5-dodecenoyl-ACP)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9997 0.9994 EG10898 (rpoN) RPON-MONOMER (RNA polymerase, sigma 54 (sigma N) factor)
   *in cand* 0.9998 0.9996 EG11680 (lptB) YHBG-MONOMER (LptB)
   *in cand* 0.9997 0.9995 EG11681 (hpf) EG11681-MONOMER (predicted ribosome-associated, sigma 54 modulation protein)
   *in cand* 0.9997 0.9994 EG11682 (ptsN) EG11682-MONOMER (phosphotransferase system enzyme IIA, regulates N metabolism)
   *in cand* 0.9996 0.9993 EG12146 (yhbJ) EG12146-MONOMER (predicted P-loop containing ATPase)
   *in cand* 0.9998 0.9996 G7665 (lptA) YHBN-MONOMER (LptA)

- ABC-53-CPLX (LptABCFG ABC transporter) (degree of match pw to cand: 0.400, degree of match cand to pw: 0.222, average score: 0.907)
  Genes in pathway or complex:
             0.9993 0.9988 G7664 (lptC) G7664-MONOMER (LptC)
   *in cand* 0.9998 0.9996 EG11680 (lptB) YHBG-MONOMER (LptB)
   *in cand* 0.9998 0.9996 G7665 (lptA) YHBN-MONOMER (LptA)
             0.7093 0.5874 G7888 (lptF) G7888-MONOMER (LptF)
             0.8037 0.6083 G7889 (lptG) G7889-MONOMER (LptG)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9997 0.9994 EG10898 (rpoN) RPON-MONOMER (RNA polymerase, sigma 54 (sigma N) factor)
   *in cand* 0.9996 0.9993 EG10973 (gutQ) EG10973-MONOMER (D-arabinose 5-phosphate isomerase)
   *in cand* 0.9997 0.9995 EG11681 (hpf) EG11681-MONOMER (predicted ribosome-associated, sigma 54 modulation protein)
   *in cand* 0.9997 0.9994 EG11682 (ptsN) EG11682-MONOMER (phosphotransferase system enzyme IIA, regulates N metabolism)
   *in cand* 0.9996 0.9993 EG12146 (yhbJ) EG12146-MONOMER (predicted P-loop containing ATPase)
   *in cand* 0.9997 0.9995 G7662 (kdsD) G7662-MONOMER (D-arabinose 5-phosphate isomerase)
   *in cand* 0.9997 0.9996 G7663 (kdsC) G7663-MONOMER (3-deoxy-D-manno-octulosonate 8-phosphate phosphatase monomer)

- LPSSYN-PWY (superpathway of lipopolysaccharide biosynthesis) (degree of match pw to cand: 0.120, degree of match cand to pw: 0.333, average score: 0.607)
  Genes in pathway or complex:
             0.0577 0.0012 EG10545 (lpxA) UDPNACETYLGLUCOSAMACYLTRANS-MONOMER (LpxA)
             0.9434 0.8872 EG10265 (lpxC) UDPACYLGLCNACDEACETYL-MONOMER (UDP-3-O-acyl-N-acetylglucosamine deacetylase)
             0.1122 0.0003 EG10316 (lpxD) UDPHYDROXYMYRGLUCOSAMNACETYLTRANS-MONO (UDP-3-O-[3-hydroxymyristoyl]glucosamine N-acetyltransferase)
             0.0624 0.0031 EG12666 (lpxH) EG12666-MONOMER (UDP-2,3-diacylglucosamine hydrolase)
             0.3324 0.0792 EG11409 (lpxK) TETRAACYLDISACC4KIN-MONOMER (tetraacyldisaccharide 4'-kinase)
             0.0694 0.0003 EG10546 (lpxB) LIPIDADISACCHARIDESYNTH-MONOMER (LpxB)
   *in cand* 0.9996 0.9993 EG10973 (gutQ) EG10973-MONOMER (D-arabinose 5-phosphate isomerase)
   *in cand* 0.9997 0.9995 G7662 (kdsD) G7662-MONOMER (D-arabinose 5-phosphate isomerase)
             0.7758 0.2060 EG10518 (kdsA) KDO-8PSYNTH-MONOMER (3-deoxy-D-manno-octulosonate 8-phosphate synthase)
   *in cand* 0.9997 0.9996 G7663 (kdsC) G7663-MONOMER (3-deoxy-D-manno-octulosonate 8-phosphate phosphatase monomer)
             0.7936 0.3948 EG10519 (kdsB) CPM-KDOSYNTH-MONOMER (3-deoxy-D-manno-octulosonate cytidylyltransferase)
             0.8162 0.6435 EG10520 (waaA) KDOTRANS-MONOMER (KDO transferase)
             0.5918 0.3737 EG10614 (lpxM) MYRISTOYLACYLTRAN-MONOMER (myristoyl-acyl carrier protein (ACP)-dependent acyltransferase)
             0.8139 0.7047 EG10464 (lpxL) LAUROYLACYLTRAN-MONOMER (lauroyl acyltransferase)
             0.7330 0.5386 EG11423 (waaK) EG11423-MONOMER (lipopolysaccharide core biosynthesis; heptosyl transferase IV; probably hexose transferase)
             0.8153 0.5749 EG11353 (waaJ) EG11353-MONOMER (UDP-glucose:(glucosyl)LPS α-1,2-glucosyltransferase)
             0.8175 0.6211 EG11352 (waaI) EG11352-MONOMER (UDP-D-glucose:(glucosyl)LPS α-1,3-glucosyltransferase)
             0.5911 0.3179 EG11351 (waaB) EG11351-MONOMER (UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase)
             0.7878 0.5001 EG11425 (waaY) EG11425-MONOMER (lipopolysaccharide core heptose (II) kinase)
             0.7807 0.6892 EG11341 (waaQ) EG11341-MONOMER (lipopolysaccharide core heptosyl transferase III)
             0.7844 0.5612 EG11340 (waaP) EG11340-MONOMER (lipopolysaccharide core heptose (I) kinase)
             0.6633 0.3633 EG11339 (waaG) EG11339-MONOMER (lipopolysaccharide glucosyltransferase I)
             0.8364 0.6749 EG12210 (waaF) EG12210-MONOMER (ADP-heptose:LPS heptosyltransferase II)
             0.7069 0.4008 EG11189 (waaC) EG11189-MONOMER (ADP-heptose:LPS heptosyl transferase I)
             0.0015 0.0003 EG50003 (acpP) TRANS-DELTA3-CIS-DELTA5-DODECENOYL-ACP (trans-Δ3-cis-Δ5-dodecenoyl-ACP)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9997 0.9994 EG10898 (rpoN) RPON-MONOMER (RNA polymerase, sigma 54 (sigma N) factor)
   *in cand* 0.9998 0.9996 EG11680 (lptB) YHBG-MONOMER (LptB)
   *in cand* 0.9997 0.9995 EG11681 (hpf) EG11681-MONOMER (predicted ribosome-associated, sigma 54 modulation protein)
   *in cand* 0.9997 0.9994 EG11682 (ptsN) EG11682-MONOMER (phosphotransferase system enzyme IIA, regulates N metabolism)
   *in cand* 0.9996 0.9993 EG12146 (yhbJ) EG12146-MONOMER (predicted P-loop containing ATPase)
   *in cand* 0.9998 0.9996 G7665 (lptA) YHBN-MONOMER (LptA)

- PWY-1269 (CMP-KDO biosynthesis I) (degree of match pw to cand: 0.600, degree of match cand to pw: 0.333, average score: 0.969)
  Genes in pathway or complex:
             0.7936 0.3948 EG10519 (kdsB) CPM-KDOSYNTH-MONOMER (3-deoxy-D-manno-octulosonate cytidylyltransferase)
   *in cand* 0.9997 0.9996 G7663 (kdsC) G7663-MONOMER (3-deoxy-D-manno-octulosonate 8-phosphate phosphatase monomer)
             0.7758 0.2060 EG10518 (kdsA) KDO-8PSYNTH-MONOMER (3-deoxy-D-manno-octulosonate 8-phosphate synthase)
   *in cand* 0.9997 0.9995 G7662 (kdsD) G7662-MONOMER (D-arabinose 5-phosphate isomerase)
   *in cand* 0.9996 0.9993 EG10973 (gutQ) EG10973-MONOMER (D-arabinose 5-phosphate isomerase)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9997 0.9994 EG10898 (rpoN) RPON-MONOMER (RNA polymerase, sigma 54 (sigma N) factor)
   *in cand* 0.9998 0.9996 EG11680 (lptB) YHBG-MONOMER (LptB)
   *in cand* 0.9997 0.9995 EG11681 (hpf) EG11681-MONOMER (predicted ribosome-associated, sigma 54 modulation protein)
   *in cand* 0.9997 0.9994 EG11682 (ptsN) EG11682-MONOMER (phosphotransferase system enzyme IIA, regulates N metabolism)
   *in cand* 0.9996 0.9993 EG12146 (yhbJ) EG12146-MONOMER (predicted P-loop containing ATPase)
   *in cand* 0.9998 0.9996 G7665 (lptA) YHBN-MONOMER (LptA)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10898 EG11680 EG11681 EG11682 EG12146 G7662 G7663 G7665 (centered at EG10898)
EG10973 (centered at EG10973)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7665   G7663   G7662   EG12146   EG11682   EG11681   EG11680   EG10973   EG10898   
191/623249/623332/623381/623344/623346/623388/623334/623340/623
AAEO224324:0:Tyes12411239794---0794132
AAUR290340:2:Tyes---1511--0--
AAVE397945:0:Tyes042914292313040704071142922
ABAC204669:0:Tyes-272902742--6040605
ABAU360910:0:Tyes-1044424040238
ABOR393595:0:Tyes578012483
ABUT367737:0:Tyes-9230---12190-
ACAU438753:0:Tyes--368-0-36243683623
ACEL351607:0:Tyes---200--0--
ACRY349163:8:Tyes--12220--122512221575
ADEH290397:0:Tyes-40623954040554056405839544057
AEHR187272:0:Tyes310876405
AFER243159:0:Tyes310976405
AHYD196024:0:Tyes578012483
ALAI441768:0:Tyes----1290---
AMAR329726:9:Tyes-30--88518190-
AMET293826:0:Tyes---3197390--2728
ANAE240017:0:Tyes---0-----
AORE350688:0:Tyes---0-1971--378
APLE416269:0:Tyes2930343290291-292343-
APLE434271:0:Tno2990352296297-298352-
ASAL382245:5:Tyes310876405
ASP1667:3:Tyes---0-----
ASP232721:2:Tyes-3693369454834923493036941
ASP62928:0:Tyes4004024030104105107403106
ASP62977:0:Tyes7897877862232-17907860
ASP76114:2:Tyes310136212171218122001219
AVAR240292:3:Tyes-----22490--
BABO262698:0:Tno--0----0-
BABO262698:1:Tno----4-0-1
BAFZ390236:2:Fyes------23-0
BAMB339670:3:Tno310976405
BAMB398577:3:Tno310976405
BAMY326423:0:Tyes---7790826--731
BANT260799:0:Tno---145501490--1442
BANT261594:2:Tno---145901493--1447
BANT568206:2:Tyes---452904564--4517
BANT592021:2:Tno---149601532--1484
BBAC264462:0:Tyes-190---30031
BBAC360095:0:Tyes--0-960-9630-
BBRO257310:0:Tyes-10106540424
BBUR224326:21:Fno------16-0
BCAN483179:0:Tno--0----0-
BCAN483179:1:Tno----4-0-1
BCEN331271:2:Tno310976405
BCEN331272:3:Tyes310976405
BCER226900:1:Tyes---140501439--1392
BCER288681:0:Tno---139001425--1372
BCER315749:1:Tyes---126301289--1250
BCER405917:1:Tyes---145801491--1445
BCER572264:1:Tno---142601461--1397
BCIC186490:0:Tyes---0-----
BCLA66692:0:Tyes---263002663--2619
BFRA272559:1:Tyes-29030---366503928
BFRA295405:0:Tno-31510---396804260
BGAR290434:2:Fyes------21-0
BHAL272558:0:Tyes---278002819--2774
BHEN283166:0:Tyes--145-1-0145-
BHER314723:0:Fyes------0--
BJAP224911:0:Fyes--7069-3-070691
BLIC279010:0:Tyes---200402048--1956
BLON206672:0:Tyes---0--1023--
BMAL243160:1:Tno310976405
BMAL320388:1:Tno310976405
BMAL320389:1:Tyes689023594
BMEL224914:0:Tno--0----0-
BMEL224914:1:Tno----0-4-3
BMEL359391:0:Tno--0----0-
BMEL359391:1:Tno----4-0-1
BOVI236:0:Tyes--0----0-
BOVI236:1:Tyes----3-0-1
BPAR257311:0:Tno-10106540294
BPER257313:0:Tyes-503504496499-5005040
BPET94624:0:Tyes-3693703603643653663700
BPSE272560:1:Tyes689023594
BPSE320372:1:Tno689023594
BPSE320373:1:Tno56702-473
BPUM315750:0:Tyes---292302987--2870
BQUI283165:0:Tyes--133-1-0133-
BSP36773:2:Tyes310976405
BSP376:0:Tyes--5823-0-358232
BSUB:0:Tyes---280166228540-2743
BSUI204722:0:Tyes--0----0-
BSUI204722:1:Tyes----4-0-1
BSUI470137:0:Tno--0----0-
BSUI470137:1:Tno----4-0-1
BTHA271848:1:Tno689023594
BTHE226186:0:Tyes-4417050--22451705903
BTHU281309:1:Tno---136001396--1348
BTHU412694:1:Tno---127601312--1263
BTRI382640:1:Tyes--154-1-0154-
BTUR314724:0:Fyes------0--
BVIE269482:7:Tyes310976405
BWEI315730:4:Tyes---147001504--1455
BXEN266265:1:Tyes--------0
CABO218497:0:Tyes--204-317-0204928
CACE272562:1:Tyes---29202630--487
CAULO:0:Tyes--0-1356-136001359
CBEI290402:0:Tyes---434513950--162
CBLO203907:0:Tyes1-412---0412-
CBLO291272:0:Tno1-424---0424-
CBOT36826:1:Tno---317017860--51
CBOT441770:0:Tyes---313016830--52
CBOT441771:0:Tno---298916820--51
CBOT441772:1:Tno---320617830--52
CBOT498213:1:Tno---321817570--56
CBOT508765:1:Tyes-1795-2796-0--2522
CBOT515621:2:Tyes---336519370--53
CBOT536232:0:Tno---347119150--51
CBUR227377:1:Tyes245--015-
CBUR360115:1:Tno310--540-
CBUR434922:2:Tno245--015-
CCAV227941:1:Tyes--200-328-0200960
CCHL340177:0:Tyes-828225---0225535
CCON360104:2:Tyes3683701059---010591
CCUR360105:0:Tyes-5830---102201021
CDES477974:0:Tyes---0-1747---
CDIF272563:1:Tyes--5889655770-588738
CDIP257309:0:Tyes---0-----
CEFF196164:0:Fyes---0-----
CFEL264202:1:Tyes--784-652-9967840
CFET360106:0:Tyes-334930---09301
CGLU196627:0:Tyes---0-----
CHOM360107:1:Tyes-01399---7461399-
CHUT269798:0:Tyes-29650---331602831
CHYD246194:0:Tyes---116-02018-123
CJAP155077:0:Tyes310987406
CJEI306537:0:Tyes---0-----
CJEJ192222:0:Tyes-0774---1677417
CJEJ195099:0:Tno-0837---1883719
CJEJ354242:2:Tyes-0738---1973820
CJEJ360109:0:Tyes-22418---14180
CJEJ407148:0:Tno-0763---1876319
CKLU431943:1:Tyes---802-8560-268
CKOR374847:0:Tyes------0--
CMIC31964:2:Tyes---0-----
CMIC443906:2:Tyes---0-----
CMUR243161:1:Tyes--646-533-0646865
CNOV386415:0:Tyes---0-1615--117
CPEL335992:0:Tyes--2---02-
CPER195102:1:Tyes---0-1832--957
CPER195103:0:Tno---02162051--1156
CPER289380:3:Tyes---0-1780--958
CPHY357809:0:Tyes---76-03247--
CPNE115711:1:Tyes--202-683-02021065
CPNE115713:0:Tno--468-0-677468726
CPNE138677:0:Tno--473-0-684473735
CPNE182082:0:Tno--495-0-712495762
CPRO264201:0:Fyes--1551-07510515511674
CPSY167879:0:Tyes310876405
CRUT413404:0:Tyes090072--34483472-
CSAL290398:0:Tyes310876405
CSP501479:1:Fyes-0-------
CSP501479:6:Fyes---0-----
CSP501479:7:Fyes260-0-257-2590-
CSP501479:8:Fyes--------0
CSP78:2:Tyes--0-3789-378503786
CTEP194439:0:Tyes-5450---16050908
CTET212717:0:Tyes--5341992-0-53447
CTRA471472:0:Tyes--647-535-0647870
CTRA471473:0:Tno--647-535-0647870
CVES412965:0:Tyes-7490--2476910-
CVIO243365:0:Tyes310976405
DARO159087:0:Tyes338133793378041084109411133784110
DDES207559:0:Tyes-14520145914581457145501456
DGEO319795:1:Tyes---136-7900--
DHAF138119:0:Tyes---3-29--0
DNOD246195:0:Tyes131-1330-210130133129
DOLE96561:0:Tyes-71624012416243
DPSY177439:2:Tyes-343381---03811
DRAD243230:3:Tyes---350-01029--
DRED349161:0:Tyes---61-86--0
DSHI398580:5:Tyes3418-3420034143415341734203416
DVUL882:1:Tyes-1459014651464-146101462
ECAR218491:0:Tyes578012483
ECOL199310:0:Tno6836816806886876866840685
ECOL316407:0:Tno4864844834914904894870488
ECOL331111:6:Tno6726706696776766756730674
ECOL362663:0:Tno6216196186266256246220623
ECOL364106:1:Tno5665645635715705695670568
ECOL405955:2:Tyes5615595585665655645620563
ECOL409438:6:Tyes5365345335415405395370538
ECOL413997:0:Tno5115095085165155145120513
ECOL439855:4:Tno6376356346426416406380639
ECOL469008:0:Tno57801244843
ECOL481805:0:Tno57801245123
ECOL585034:0:Tno5415395385465455445420543
ECOL585035:0:Tno5975955946026016005980599
ECOL585055:0:Tno6346326316396386376350636
ECOL585056:2:Tno6416396386466456446420643
ECOL585057:0:Tno8138118108188178168140815
ECOL585397:0:Tno6856836826906896886860687
ECOL83334:0:Tno5265245235315305295270528
ECOLI:0:Tno4994974965045035025000501
ECOO157:0:Tno5295275265345335325300531
EFAE226185:3:Tyes---6701026--81
EFER585054:1:Tyes280127992798280628052804280202803
ELIT314225:0:Tyes---02202-2459-2458
ESP42895:1:Tyes4574554544624614604580459
FALN326424:0:Tyes---0-----
FJOH376686:0:Tyes-27080---30307
FMAG334413:1:Tyes---7159210---
FNOD381764:0:Tyes---1093--0-1119
FNUC190304:0:Tyes-06908761278248482690-
FPHI484022:1:Tyes-33182--033482-
FRANT:0:Tno-2260--4532230-
FSP106370:0:Tyes---0-----
FSP1855:0:Tyes---0-----
FSUC59374:0:Tyes----342-1-0
FTUL351581:0:Tno-0328--1033328-
FTUL393011:0:Tno-0293--913293-
FTUL393115:0:Tyes-2240--4492210-
FTUL401614:0:Tyes-3318--3920318-
FTUL418136:0:Tno-32525--032225-
FTUL458234:0:Tno-0294--902294-
GBET391165:0:Tyes--3050--302305301
GFOR411154:0:Tyes-1717497---4944970
GKAU235909:1:Tyes---1253012961163-1247
GMET269799:1:Tyes310813336405
GOXY290633:5:Tyes--10220--101910221018
GSUL243231:0:Tyes114711501151114201144114611511145
GTHE420246:1:Tyes---882901220-83
GURA351605:0:Tyes207920812082207302076207820822077
GVIO251221:0:Tyes---3418-02509--
HACI382638:1:Tyes-14460---7600759
HARS204773:0:Tyes21621421320219217213218
HAUR316274:2:Tyes-----4202--0
HCHE349521:0:Tyes310876405
HDUC233412:0:Tyes2530775250251-252775-
HHAL349124:0:Tyes310976405
HHEP235279:0:Tyes25625499---1990
HINF281310:0:Tyes359359201-2592-
HINF374930:0:Tyes7713173187747730772318-
HINF71421:0:Tno352452301-2523-
HMAR272569:7:Tyes----0----
HMAR272569:8:Tyes------0--
HMOD498761:0:Tyes---374-4150-370
HNEP81032:0:Tyes0-809-3033-18092
HPY:0:Tno-867726---17260
HPYL357544:1:Tyes-844678---16780
HPYL85963:0:Tno-818666---16660
HSOM205914:1:Tyes7144574567177160715456-
HSOM228400:0:Tno8366366358398380837635-
ILOI283942:0:Tyes578012483
JSP290400:1:Tyes154-0471151-1530-
JSP375286:0:Tyes23423223120237235231236
KPNE272620:2:Tyes5675655645725715705680569
KRAD266940:2:Fyes---0-----
LACI272621:0:Tyes---1810460---
LBIF355278:2:Tyes--1669---016691
LBIF456481:2:Tno--1734---017341
LBOR355276:1:Tyes--1990-012977981990797
LBOR355277:1:Tno--0-20401934124901248
LBRE387344:2:Tyes---25-0---
LCAS321967:1:Tyes---3116790---
LCHO395495:0:Tyes4078103336295294407704076
LDEL321956:0:Tyes---1311070---
LDEL390333:0:Tyes---1210510---
LGAS324831:0:Tyes---111601133---
LHEL405566:0:Tyes---138580---
LINN272626:1:Tno--54221602253-542153
LINT189518:1:Tyes--0-5941156238002379
LINT267671:1:Tno--0-28622419148401485
LINT363253:3:Tyes-3680374--3710372
LJOH257314:0:Tyes---5750554---
LLAC272622:5:Tyes---3533400---
LLAC272623:0:Tyes---318-0---
LMES203120:1:Tyes--533--0-533-
LMON169963:0:Tno--75210302140-752089
LMON265669:0:Tyes--87198702024-871975
LPLA220668:0:Tyes---3611530--43
LPNE272624:0:Tno360362363--03593631
LPNE297245:1:Fno352354355--03513551
LPNE297246:1:Fyes356358359--03553591
LPNE400673:0:Tno310--40240401
LREU557436:0:Tyes---22-0---
LSAK314315:0:Tyes---325580---
LSPH444177:1:Tyes---347-10854452-0
LWEL386043:0:Tyes---203602073--2024
LXYL281090:0:Tyes---0-----
MABS561007:1:Tyes---0-----
MACE188937:0:Tyes-0-------
MAER449447:0:Tyes-----04020--
MAQU351348:2:Tyes310876405
MAVI243243:0:Tyes---0-----
MBOV233413:0:Tno---0-----
MBOV410289:0:Tno---0-----
MCAP243233:0:Tyes4670-1372
MCAP340047:0:Tyes----0----
MEXT419610:0:Tyes--1098-3-010981
MFLA265072:0:Tyes3108-6405
MFLO265311:0:Tyes----0----
MGIL350054:3:Tyes---0-----
MLEP272631:0:Tyes---0-----
MLOT266835:2:Tyes--0-132-1350134
MMAG342108:0:Tyes--04635-304
MMAR394221:0:Tyes--2384-0-323842
MMYC272632:0:Tyes----0----
MPEN272633:0:Tyes----0----
MPET420662:1:Tyes23653365431817778136540
MSME246196:0:Tyes---1848--0--
MSP164756:1:Tno---0---392-
MSP164757:0:Tno---0-----
MSP189918:2:Tyes---0---386-
MSP266779:3:Tyes--0-932-9350934
MSP400668:0:Tyes131720-13202156131801319
MSP409:2:Tyes--0-192-1840183
MSUC221988:0:Tyes14136766771416141501414677-
MTBCDC:0:Tno---0-----
MTBRV:0:Tno---0-----
MTHE187420:0:Tyes-0-------
MTHE264732:0:Tyes---2390208--242
MTUB336982:0:Tno---0-----
MTUB419947:0:Tyes---0-----
MVAN350058:0:Tyes---0-----
MXAN246197:0:Tyes-334700532354047001
NARO279238:0:Tyes--62328360-189623190
NEUR228410:0:Tyes4--1816013-2
NEUT335283:2:Tyes730--0734733731-732
NFAR247156:2:Tyes---0-----
NGON242231:0:Tyes11741176117720-11731177-
NHAM323097:2:Tyes--3122-0-531222
NMEN122586:0:Tno129127126505503-1301260
NMEN122587:0:Tyes198919911992857855-198819920
NMEN272831:0:Tno140414061407442440-140314070
NMEN374833:0:Tno10771079108020-10761080-
NMUL323848:3:Tyes57-0-24-3
NOCE323261:1:Tyes310976405
NSP103690:6:Tyes-----0890--
NSP35761:1:Tyes---1099-0---
NSP387092:0:Tyes-7470---8220-
NWIN323098:0:Tyes--766-5-07663
OANT439375:4:Tyes--0----0-
OANT439375:5:Tyes----3-0-1
OCAR504832:0:Tyes--473-3-04731
OIHE221109:0:Tyes---165901689--1631
PACN267747:0:Tyes---01408----
PAER208963:0:Tyes310876405
PAER208964:0:Tno310876405
PARC259536:0:Tyes8108088070-8981180788
PATL342610:0:Tyes310876405
PCAR338963:0:Tyes578012483
PCRY335284:1:Tyes1357135913600-971356136096
PDIS435591:0:Tyes-027183624--221727182986
PENT384676:0:Tyes578012483
PFLU205922:0:Tyes578012483
PFLU216595:1:Tyes578012483
PFLU220664:0:Tyes578012483
PGIN242619:0:Tyes-5060---4810896
PHAL326442:1:Tyes310876405
PING357804:0:Tyes2444244231624482447024453162446
PINT246198:0:Tyes-0-------
PINT246198:1:Tyes--18451290--01845457
PLUM243265:0:Fyes310876405
PLUT319225:0:Tyes-9611425-1465-01425615
PMAR146891:0:Tyes-----0373--
PMAR167539:0:Tyes-----0445--
PMAR167540:0:Tyes-----0368--
PMAR167542:0:Tyes-----0362--
PMAR167546:0:Tyes-----0405--
PMAR167555:0:Tyes-----0347--
PMAR59920:0:Tno-----15990--
PMAR74546:0:Tyes-----0379--
PMAR74547:0:Tyes-17321731--03671731-
PMAR93060:0:Tyes-----0384--
PMEN399739:0:Tyes578012483
PMOB403833:0:Tyes---0--450--
PMUL272843:1:Tyes804324337778079433-
PNAP365044:8:Tyes282532183219029102911282632192827
PPEN278197:0:Tyes---2970274--303
PPRO298386:2:Tyes310876405
PPUT160488:0:Tno578012483
PPUT351746:0:Tyes578012483
PPUT76869:0:Tno578012483
PRUM264731:0:Tyes-11411553204--04042757
PSP117:0:Tyes-25722573-1921-02573758
PSP296591:2:Tyes316535653566032873288316435663163
PSP312153:0:Tyes-1086540-
PSP56811:2:Tyes4824804791806-14834790
PSTU379731:0:Tyes578012483
PSYR205918:0:Tyes310876405
PSYR223283:2:Tyes310876405
PTHE370438:0:Tyes---5-30--0
RAKA293614:0:Fyes--3---03-
RALB246199:0:Tyes---0-----
RBEL336407:0:Tyes--0---30-
RBEL391896:0:Fno--0---30-
RCAN293613:0:Fyes--0---30-
RCAS383372:0:Tyes------0--
RCON272944:0:Tno--3---03-
RDEN375451:4:Tyes2-09425-30-
RETL347834:5:Tyes0-3127-5-131272
REUT264198:3:Tyes7-9034695
REUT381666:2:Tyes8-100357106
RFEL315456:2:Tyes--3---03-
RFER338969:1:Tyes-348634879031027348728
RLEG216596:6:Tyes--3663-4-036631
RMAS416276:1:Tyes--3---03-
RMET266264:2:Tyes8-100357106
RPAL258594:0:Tyes--841-3-08411
RPAL316055:0:Tyes-3777265-3-02651
RPAL316056:0:Tyes--356-0-33562
RPAL316057:0:Tyes--699-3-06991
RPAL316058:0:Tyes--3904-0-339042
RPOM246200:1:Tyes--561601253640
RPRO272947:0:Tyes--0---30-
RRIC392021:0:Fno--3---03-
RRIC452659:0:Tyes--4---04-
RRUB269796:1:Tyes--534280-251
RSAL288705:0:Tyes---0-----
RSOL267608:1:Tyes79100346105
RSP101510:3:Fyes---0-----
RSPH272943:4:Tyes--254302548-254625431895
RSPH349101:2:Tno--251802523-252125181874
RSPH349102:5:Tyes--1500128914951496149715000
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