CANDIDATE ID: 56

CANDIDATE ID: 56

NUMBER OF GENES: 9
AVERAGE SCORE:    9.9968144e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:   1.0000000e-32

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7306 (hyfI) (b2489)
   Products of gene:
     - MONOMER0-151 (hydrogenase 4, small subunit)
     - CPLX0-250 (hydrogenase 4)
       Reactions:
        2 H+ + 2 e-  ->  H2

- G7304 (hyfG) (b2487)
   Products of gene:
     - MONOMER0-150 (hydrogenase 4, large subunit)
     - CPLX0-250 (hydrogenase 4)
       Reactions:
        2 H+ + 2 e-  ->  H2

- G7303 (hyfF) (b2486)
   Products of gene:
     - MONOMER0-143 (hydrogenase 4, component F)
     - CPLX0-250 (hydrogenase 4)
       Reactions:
        2 H+ + 2 e-  ->  H2

- G7300 (hyfC) (b2483)
   Products of gene:
     - MONOMER0-154 (hydrogenase 4, component C)
     - CPLX0-250 (hydrogenase 4)
       Reactions:
        2 H+ + 2 e-  ->  H2

- EG11282 (hyfB) (b2482)
   Products of gene:
     - MONOMER0-153 (hydrogenase 4, component B)
     - CPLX0-250 (hydrogenase 4)
       Reactions:
        2 H+ + 2 e-  ->  H2

- EG10480 (hycG) (b2719)
   Products of gene:
     - HYCG-MONOMER (hydrogenase 3 and formate hydrogenlyase complex, HycG subunit)
     - HYDROG3-CPLX (hydrogenase 3)
       Reactions:
        2 H+ + 2 e-  ->  H2
     - FHLMULTI-CPLX (formate hydrogenlyase complex)
       Reactions:
        formate + H+  ->  CO2 + H2
         In pathways
         ANARESP1-PWY (respiration (anaerobic))
         FERMENTATION-PWY (mixed acid fermentation)

- EG10478 (hycE) (b2721)
   Products of gene:
     - HYCELARGE-MONOMER (hydrogenase 3, large subunit)
     - HYDROG3-CPLX (hydrogenase 3)
       Reactions:
        2 H+ + 2 e-  ->  H2
     - FHLMULTI-CPLX (formate hydrogenlyase complex)
       Reactions:
        formate + H+  ->  CO2 + H2
         In pathways
         ANARESP1-PWY (respiration (anaerobic))
         FERMENTATION-PWY (mixed acid fermentation)

- EG10477 (hycD) (b2722)
   Products of gene:
     - HYCD-MONOMER (hydrogenase 3, membrane subunit)
     - HYDROG3-CPLX (hydrogenase 3)
       Reactions:
        2 H+ + 2 e-  ->  H2
     - FHLMULTI-CPLX (formate hydrogenlyase complex)
       Reactions:
        formate + H+  ->  CO2 + H2
         In pathways
         ANARESP1-PWY (respiration (anaerobic))
         FERMENTATION-PWY (mixed acid fermentation)

- EG10476 (hycC) (b2723)
   Products of gene:
     - HYCC-MONOMER (hydrogenase 3, membrane subunit)
     - HYDROG3-CPLX (hydrogenase 3)
       Reactions:
        2 H+ + 2 e-  ->  H2
     - FHLMULTI-CPLX (formate hydrogenlyase complex)
       Reactions:
        formate + H+  ->  CO2 + H2
         In pathways
         ANARESP1-PWY (respiration (anaerobic))
         FERMENTATION-PWY (mixed acid fermentation)



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ORGANISMS CONTAINING AT LEAST 8 GENES FROM THE GROUP:

Total number of orgs: 112
Effective number of orgs (counting one per cluster within 468 clusters): 79

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80819
XAUT78245 ncbi Xanthobacter autotrophicus Py29
WSUC273121 ncbi Wolinella succinogenes DSM 17409
UMET351160 ncbi uncultured methanogenic archaeon RC-I9
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB49
TPEN368408 ncbi Thermofilum pendens Hrk 59
TKOD69014 ncbi Thermococcus kodakarensis KOD19
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT28
SSP387093 ncbi Sulfurovum sp. NBC37-19
SSON300269 ncbi Shigella sonnei Ss0469
SPRO399741 ncbi Serratia proteamaculans 5689
SMEL266834 ncbi Sinorhizobium meliloti 10218
SMED366394 ncbi Sinorhizobium medicae WSM4199
SMAR399550 ncbi Staphylothermus marinus F18
SHIGELLA ncbi Shigella flexneri 2a str. 2457T9
SFLE373384 ncbi Shigella flexneri 5 str. 84019
SFLE198214 ncbi Shigella flexneri 2a str. 3019
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4768
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B678
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91508
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT188
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty28
SDYS300267 ncbi Shigella dysenteriae Sd1979
SBOY300268 ncbi Shigella boydii Sb2279
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111709
RPAL316058 ncbi Rhodopseudomonas palustris HaA29
RPAL316057 ncbi Rhodopseudomonas palustris BisB59
RPAL316056 ncbi Rhodopseudomonas palustris BisB189
RPAL316055 ncbi Rhodopseudomonas palustris BisA539
RMET266264 ncbi Ralstonia metallidurans CH349
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38419
RFER338969 ncbi Rhodoferax ferrireducens T1189
REUT381666 ncbi Ralstonia eutropha H169
PSP296591 ncbi Polaromonas sp. JS6669
PHOR70601 ncbi Pyrococcus horikoshii OT39
PFUR186497 ncbi Pyrococcus furiosus DSM 36389
PABY272844 ncbi Pyrococcus abyssi GE59
NSP387092 ncbi Nitratiruptor sp. SB155-29
NSP35761 Nocardioides sp.9
NOCE323261 ncbi Nitrosococcus oceani ATCC 197079
NMUL323848 ncbi Nitrosospira multiformis ATCC 251968
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra9
MTUB336982 ncbi Mycobacterium tuberculosis F119
MTHE264732 ncbi Moorella thermoacetica ATCC 390739
MTBRV ncbi Mycobacterium tuberculosis H37Rv9
MTBCDC ncbi Mycobacterium tuberculosis CDC15519
MMAZ192952 ncbi Methanosarcina mazei Go19
MMAG342108 ncbi Magnetospirillum magneticum AMB-19
MLAB410358 ncbi Methanocorpusculum labreanum Z9
MHUN323259 ncbi Methanospirillum hungatei JF-19
MCAP243233 ncbi Methylococcus capsulatus Bath9
MBUR259564 ncbi Methanococcoides burtonii DSM 62428
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P29
MBOV233413 ncbi Mycobacterium bovis AF2122/979
MAVI243243 ncbi Mycobacterium avium 1049
MAEO419665 ncbi Methanococcus aeolicus Nankai-39
MACE188937 ncbi Methanosarcina acetivorans C2A9
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785788
GURA351605 ncbi Geobacter uraniireducens Rf49
GSUL243231 ncbi Geobacter sulfurreducens PCA9
GMET269799 ncbi Geobacter metallireducens GS-159
ESP42895 Enterobacter sp.8
EFER585054 ncbi Escherichia fergusonii ATCC 354699
ECOO157 ncbi Escherichia coli O157:H7 EDL9339
ECOL83334 Escherichia coli O157:H79
ECOL585397 ncbi Escherichia coli ED1a8
ECOL585057 ncbi Escherichia coli IAI399
ECOL585056 ncbi Escherichia coli UMN0269
ECOL585055 ncbi Escherichia coli 559899
ECOL585035 ncbi Escherichia coli S888
ECOL585034 ncbi Escherichia coli IAI19
ECOL481805 ncbi Escherichia coli ATCC 87399
ECOL469008 ncbi Escherichia coli BL21(DE3)9
ECOL439855 ncbi Escherichia coli SMS-3-59
ECOL413997 ncbi Escherichia coli B str. REL6069
ECOL409438 ncbi Escherichia coli SE119
ECOL405955 ncbi Escherichia coli APEC O18
ECOL364106 ncbi Escherichia coli UTI898
ECOL362663 ncbi Escherichia coli 5368
ECOL331111 ncbi Escherichia coli E24377A8
ECOL316407 ncbi Escherichia coli K-12 substr. W31109
ECOL199310 ncbi Escherichia coli CFT0738
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10439
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough9
DSP255470 ncbi Dehalococcoides sp. CBDB19
DSP216389 ncbi Dehalococcoides sp. BAV19
DPSY177439 ncbi Desulfotalea psychrophila LSv549
DHAF138119 ncbi Desulfitobacterium hafniense Y519
DETH243164 ncbi Dehalococcoides ethenogenes 1959
CTEP194439 ncbi Chlorobium tepidum TLS8
CMET456442 ncbi Candidatus Methanoregula boonei 6A89
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29019
CFET360106 ncbi Campylobacter fetus fetus 82-409
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C8
CCUR360105 ncbi Campylobacter curvus 525.929
CCON360104 ncbi Campylobacter concisus 138269
CCHL340177 ncbi Chlorobium chlorochromatii CaD38
BXEN266265 ncbi Burkholderia xenovorans LB4008
BTHA271848 ncbi Burkholderia thailandensis E2648
BPSE320373 ncbi Burkholderia pseudomallei 6688
BPSE320372 ncbi Burkholderia pseudomallei 1710b8
BPSE272560 ncbi Burkholderia pseudomallei K962438
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1109
ASP76114 ncbi Aromatoleum aromaticum EbN19
ASP62977 ncbi Acinetobacter sp. ADP18
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4499
AHYD196024 Aeromonas hydrophila dhakensis9
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232709
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C9
ACRY349163 ncbi Acidiphilium cryptum JF-59
ACEL351607 ncbi Acidothermus cellulolyticus 11B8
ACAU438753 ncbi Azorhizobium caulinodans ORS 5719


Names of the homologs of the genes in the group in each of these orgs
  G7306   G7304   G7303   G7300   EG11282   EG10480   EG10478   EG10477   EG10476   
YENT393305 YE2806YE2804YE2803YE2800YE2799YE2806YE2804YE2800YE2799
XAUT78245 XAUT_0171XAUT_0170XAUT_0169XAUT_0167XAUT_0166XAUT_0171XAUT_0170XAUT_0167XAUT_0166
WSUC273121 WS1836WS1838WS1839WS1841WS1842WS1836WS1838WS1841WS1842
UMET351160 RCIX2382RCIX2383RCIX2384RCIX2386RCIX2387RCIX2382RCIX2383RCIX2386RCIX2387
TTEN273068 TTE1698TTE1700TTE1702TTE1705TTE1706TTE1698TTE1700TTE1705TTE1706
TPEN368408 TPEN_0181TPEN_0183TPEN_0185TPEN_0187TPEN_0188TPEN_0181TPEN_0183TPEN_0187TPEN_0188
TKOD69014 TK2089TK2091TK1220TK2092TK2087TK2089TK2091TK2092TK2087
STYP99287 STM2847STM2849STM2850STM2851STM2847STM2849STM2850STM2851
SSP387093 SUN_0264SUN_0263SUN_0259SUN_0260SUN_0259SUN_0845SUN_0846SUN_0260SUN_0259
SSON300269 SSO_2570SSO_2868SSO_2567SSO_2564SSO_2563SSO_2866SSO_2868SSO_2869SSO_2870
SPRO399741 SPRO_2428SPRO_2430SPRO_2432SPRO_2431SPRO_2432SPRO_2428SPRO_2430SPRO_2431SPRO_2432
SMEL266834 SMC01913SMA1529SMC03179SMA1516SMA1541SMC01913SMA1529SMA1536
SMED366394 SMED_0889SMED_3620SMED_2806SMED_3614SMED_2806SMED_0889SMED_3620SMED_3614SMED_3625
SMAR399550 SMAR_0018SMAR_1061SMAR_0645SMAR_1060SMAR_0018SMAR_1061SMAR_1060SMAR_0028
SHIGELLA HYFIHYCEHYFFHYFCHYCCHYFIHYCEHYCDHYCC
SFLE373384 SFV_2534SFV_2782SFV_2531SFV_2528SFV_2780SFV_2784SFV_2782SFV_2781SFV_2780
SFLE198214 AAN44035.1AAN44229.1AAN44031.1AAN44028.1AAN44231.1AAN44035.1AAN44229.1AAN44230.1AAN44231.1
SENT454169 SEHA_C3034SEHA_C3036SEHA_C3037SEHA_C3038SEHA_C3034SEHA_C3036SEHA_C3037SEHA_C3038
SENT321314 SCH_2780SCH_2782SCH_2783SCH_2784SCH_2780SCH_2782SCH_2783SCH_2784
SENT295319 SPA2705SPA2707SPA2708SPA2709SPA2705SPA2707SPA2708SPA2709
SENT220341 STY2969STY2971STY2972STY2973STY2969STY2971STY2972STY2973
SENT209261 T2749T2751T2752T2753T2749T2751T2752T2753
SDYS300267 SDY_2678SDY_2918SDY_2675SDY_2672SDY_2671SDY_2678SDY_2918SDY_2919SDY_2671
SBOY300268 SBO_2510SBO_2797SBO_2507SBO_2504SBO_2795SBO_2799SBO_2797SBO_2796SBO_2795
RRUB269796 RRU_A0321RRU_A0316RRU_A0320RRU_A0317RRU_A0315RRU_A0321RRU_A0316RRU_A0317RRU_A0315
RPAL316058 RPB_1265RPB_1264RPB_1263RPB_1261RPB_1260RPB_1265RPB_1264RPB_1261RPB_1260
RPAL316057 RPD_3850RPD_3851RPD_3852RPD_3854RPD_3855RPD_3850RPD_3851RPD_3854RPD_3855
RPAL316056 RPC_4568RPC_4570RPC_4571RPC_4574RPC_4575RPC_4568RPC_4570RPC_4574RPC_4575
RPAL316055 RPE_0957RPE_0956RPE_0955RPE_0953RPE_0952RPE_0957RPE_1712RPE_0953RPE_0952
RMET266264 RMET_4666RMET_4667RMET_4668RMET_4670RMET_4671RMET_4666RMET_4667RMET_4670RMET_4671
RLEG216596 PRL110292PRL110293PRL110294PRL110296PRL110297PRL110292PRL110293PRL110296PRL110297
RFER338969 RFER_3287RFER_3288RFER_3289RFER_3291RFER_3292RFER_3287RFER_3288RFER_3291RFER_3292
REUT381666 H16_A2201H16_A2200H16_A2199H16_A2197H16_A2196H16_A2201H16_A2200H16_A2197H16_A2196
PSP296591 BPRO_0921BPRO_0920BPRO_0919BPRO_0917BPRO_0916BPRO_0921BPRO_0920BPRO_0917BPRO_0916
PHOR70601 PH1434PH1437PH1452PH1439PH1431PH1434PH1437PH1439PH1431
PFUR186497 PF1432PF1434PF1430PF1435PF1430PF1432PF1434PF1435PF1430
PABY272844 PAB1890PAB1394PAB1888PAB1393PAB1392PAB1396PAB1394PAB1393PAB1392
NSP387092 NIS_0714NIS_0715NIS_0716NIS_0718NIS_0719NIS_0714NIS_0715NIS_0718NIS_0719
NSP35761 NOCA_4470NOCA_4465NOCA_4466NOCA_4468NOCA_4469NOCA_4470NOCA_4465NOCA_4468NOCA_4469
NOCE323261 NOC_2564NOC_1125NOC_1281NOC_1121NOC_1280NOC_2564NOC_1125NOC_1121NOC_2554
NMUL323848 NMUL_A1092NMUL_A1015NMUL_A1591NMUL_A1023NMUL_A1092NMUL_A1015NMUL_A1019NMUL_A1023
MTUB419947 MRA_0086MRA_0091MRA_0090MRA_0088MRA_0087MRA_0086MRA_0091MRA_0088MRA_0087
MTUB336982 TBFG_10083TBFG_10088TBFG_10087TBFG_10085TBFG_10084TBFG_10083TBFG_10088TBFG_10085TBFG_10084
MTHE264732 MOTH_2184MOTH_2186MOTH_2188MOTH_2190MOTH_2191MOTH_2184MOTH_2186MOTH_2190MOTH_2191
MTBRV RV0082RV0087RV0086RV0084RV0083RV0082RV0087RV0084RV0083
MTBCDC MT0089MT3236MT0093MT0091MT0090MT0089MT3236MT0091MT0090
MMAZ192952 MM2322MM2324MM1062MM1060MM1059MM2322MM1063MM1060MM1059
MMAG342108 AMB0206AMB0207AMB0208AMB0210AMB0211AMB0206AMB0207AMB0210AMB0211
MLAB410358 MLAB_1622MLAB_0959MLAB_0955MLAB_0960MLAB_0955MLAB_0957MLAB_0959MLAB_0960MLAB_0955
MHUN323259 MHUN_2588MHUN_2590MHUN_1819MHUN_1821MHUN_1822MHUN_2588MHUN_1745MHUN_1821MHUN_1822
MCAP243233 MCA_1137MCA_1138MCA_1139MCA_1141MCA_1142MCA_1137MCA_1138MCA_1141MCA_1142
MBUR259564 MBUR_1296MBUR_1294MBUR_0135MBUR_1293MBUR_0135MBUR_1294MBUR_1293MBUR_0135
MBOV410289 BCG_0115BCG_0120BCG_0119BCG_0117BCG_0116BCG_0115BCG_0120BCG_0117BCG_0116
MBOV233413 MB0085MB0090MB0089MB0087MB0086MB0085MB0090MB0087MB0086
MAVI243243 MAV_5114MAV_5109MAV_5110MAV_5112MAV_5113MAV_5114MAV_5109MAV_5112MAV_5113
MAEO419665 MAEO_0938MAEO_0306MAEO_0940MAEO_0942MAEO_0943MAEO_0938MAEO_0371MAEO_0942MAEO_0943
MACE188937 MA4373MA4372MA4371MA4369MA4368MA4373MA4372MA4369MA4368
KPNE272620 GKPORF_B2389GKPORF_B2391GKPORF_B2392GKPORF_B2393GKPORF_B2389GKPORF_B2391GKPORF_B2392GKPORF_B2393
GURA351605 GURA_2651GURA_0803GURA_0889GURA_0891GURA_0892GURA_2651GURA_0803GURA_0891GURA_4066
GSUL243231 GSU_0745GSU_3444GSU_0742GSU_0740GSU_0734GSU_0745GSU_3444GSU_0740GSU_0734
GMET269799 GMET_0369GMET_0153GMET_0372GMET_0374GMET_2601GMET_0369GMET_0153GMET_2600GMET_0375
ESP42895 ENT638_3192ENT638_3194ENT638_3195ENT638_3196ENT638_3192ENT638_3194ENT638_3195ENT638_3196
EFER585054 EFER_0686EFER_0688EFER_0689EFER_0692EFER_0693EFER_0358EFER_0688EFER_0355EFER_0354
ECOO157 HYFIHYCEHYFFHYFCHYFBHYCGHYCEHYCDHYCC
ECOL83334 ECS3351ECS3577ECS3348ECS3345ECS3344ECS3575ECS3577ECS3578ECS3579
ECOL585397 ECED1_3170ECED1_3172ECED1_3173ECED1_3174ECED1_3170ECED1_3172ECED1_3173ECED1_3174
ECOL585057 ECIAI39_2628ECIAI39_2909ECIAI39_2625ECIAI39_2622ECIAI39_2621ECIAI39_2907ECIAI39_2909ECIAI39_2910ECIAI39_2911
ECOL585056 ECUMN_2802ECUMN_3043ECUMN_2799ECUMN_2796ECUMN_2795ECUMN_3041ECUMN_3043ECUMN_3044ECUMN_3045
ECOL585055 EC55989_2774EC55989_2987EC55989_2771EC55989_2988EC55989_2765EC55989_2985EC55989_2987EC55989_2988EC55989_2989
ECOL585035 ECS88_2984ECS88_2986ECS88_2987ECS88_2988ECS88_2984ECS88_2986ECS88_2987ECS88_2988
ECOL585034 ECIAI1_2540ECIAI1_2815ECIAI1_2537ECIAI1_2534ECIAI1_2533ECIAI1_2813ECIAI1_2815ECIAI1_2816ECIAI1_2817
ECOL481805 ECOLC_1187ECOLC_1189ECOLC_1190ECOLC_0990ECOLC_1194ECOLC_0993ECOLC_1189ECOLC_0990ECOLC_0989
ECOL469008 ECBD_1199ECBD_1201ECBD_1202ECBD_1003ECBD_1207ECBD_1006ECBD_1201ECBD_1003ECBD_1002
ECOL439855 ECSMS35_2636ECSMS35_2846ECSMS35_2633ECSMS35_2630ECSMS35_2629ECSMS35_2844ECSMS35_2846ECSMS35_2847ECSMS35_2848
ECOL413997 ECB_02381ECB_02571ECB_02378ECB_02572ECB_02374ECB_02569ECB_02571ECB_02572ECB_02573
ECOL409438 ECSE_2774ECSE_2969ECSE_2771ECSE_2767ECSE_2766ECSE_2967ECSE_2969ECSE_2970ECSE_2971
ECOL405955 APECO1_3806APECO1_3804APECO1_3803APECO1_3802APECO1_3806APECO1_3804APECO1_3803APECO1_3802
ECOL364106 UTI89_C3082UTI89_C3084UTI89_C3085UTI89_C3086UTI89_C3082UTI89_C3084UTI89_C3085UTI89_C3086
ECOL362663 ECP_2682ECP_2684ECP_2685ECP_2686ECP_2682ECP_2684ECP_2685ECP_2686
ECOL331111 ECE24377A_2771ECE24377A_3009ECE24377A_2765ECE24377A_3011ECE24377A_3007ECE24377A_3009ECE24377A_3010ECE24377A_3011
ECOL316407 ECK2485:JW5805:B2489ECK2716:JW2691:B2721ECK2482:JW2471:B2486ECK2479:JW2468:B2483ECK2478:JW2467:B2482ECK2714:JW2689:B2719ECK2716:JW2691:B2721ECK2717:JW2692:B2722ECK2718:JW2693:B2723
ECOL199310 C3279C3281C3282C3283C3279C3281C3282C3283
ECAR218491 ECA1239ECA1241ECA1242ECA1245ECA1246ECA1239ECA1241ECA1245ECA1246
DVUL882 DVU_0432DVU_0430DVU_2286DVU_2287DVU_2286DVU_0432DVU_2291DVU_2287DVU_2286
DSP255470 CBDBA844CBDBA1653CBDBA1655CBDBA1658CBDBA1659CBDBA844CBDBA850CBDBA1658CBDBA1659
DSP216389 DEHABAV1_0780DEHABAV1_1317DEHABAV1_1318DEHABAV1_1320DEHABAV1_1321DEHABAV1_0780DEHABAV1_0785DEHABAV1_1320DEHABAV1_1321
DPSY177439 DP1042DP1043DP1044DP1046DP1047DP1042DP1318DP1046DP1047
DHAF138119 DSY3114DSY3115DSY3116DSY3118DSY3119DSY3114DSY3115DSY3118DSY3119
DETH243164 DET_0862DET_1571DET_1572DET_1574DET_1575DET_0862DET_0867DET_1574DET_1575
CTEP194439 CT_0767CT_0769CT_0774CT_0770CT_0775CT_0767CT_0769CT_0770
CMET456442 MBOO_0026MBOO_1123MBOO_1124MBOO_1126MBOO_1127MBOO_0026MBOO_1123MBOO_1126MBOO_1127
CHYD246194 CHY_1830CHY_1827CHY_1832CHY_1831CHY_1832CHY_1830CHY_1827CHY_1831CHY_1832
CFET360106 CFF8240_0125CFF8240_0127CFF8240_0128CFF8240_0131CFF8240_0132CFF8240_0125CFF8240_0127CFF8240_0131CFF8240_0132
CDES477974 DAUD_1100DAUD_1102DAUD_2161DAUD_1099DAUD_1100DAUD_1102DAUD_1099DAUD_2158
CCUR360105 CCV52592_1637CCV52592_1635CCV52592_1038CCV52592_1790CCV52592_1791CCV52592_1637CCV52592_1635CCV52592_1790CCV52592_1791
CCON360104 CCC13826_0713CCC13826_0711CCC13826_1911CCC13826_1913CCC13826_1914CCC13826_0713CCC13826_0711CCC13826_1913CCC13826_1914
CCHL340177 CAG_0635CAG_0637CAG_0642CAG_0638CAG_0643CAG_0635CAG_0637CAG_0638
BXEN266265 BXE_B0324BXE_B0325BXE_C0176BXE_B0329BXE_B0324BXE_B0325BXE_C0178BXE_B0329
BTHA271848 BTH_II1266BTH_II1265BTH_II1264BTH_II1261BTH_II1266BTH_II1265BTH_II1262BTH_II1261
BPSE320373 BURPS668_A1612BURPS668_A1613BURPS668_A1614BURPS668_A1617BURPS668_A1612BURPS668_A1613BURPS668_A1616BURPS668_A1617
BPSE320372 BURPS1710B_B0123BURPS1710B_B0124BURPS1710B_B0125BURPS1710B_B0128BURPS1710B_B0123BURPS1710B_B0124BURPS1710B_B0127BURPS1710B_B0128
BPSE272560 BPSS1142BPSS1143BPSS1144BPSS1147BPSS1142BPSS1143BPSS1146BPSS1147
BJAP224911 BLR6344BLR6343BLR6342BLR6340BLR6339BLR6344BLR6343BLR6340BLR6339
ASP76114 EBA4186EBA4187EBA4190EBA4192EBA4193EBA4186EBA4187EBA4192EBA4193
ASP62977 ACIAD0731ACIAD0733ACIAD0376ACIAD0737ACIAD0731ACIAD0733ACIAD0737ACIAD0741
ASAL382245 ASA_1810ASA_1812ASA_1814ASA_1813ASA_1814ASA_1810ASA_1812ASA_1813ASA_1814
AHYD196024 AHA_2504AHA_2502AHA_2500AHA_2501AHA_2500AHA_2504AHA_2502AHA_2501AHA_2500
AFER243159 AFE_0943AFE_0944AFE_0945AFE_0947AFE_0948AFE_0943AFE_0944AFE_0947AFE_0948
ADEH290397 ADEH_3660ADEH_3659ADEH_3658ADEH_3656ADEH_3655ADEH_3660ADEH_3659ADEH_3656ADEH_3655
ACRY349163 ACRY_1401ACRY_1400ACRY_1399ACRY_1397ACRY_1396ACRY_1401ACRY_1400ACRY_1397ACRY_1396
ACEL351607 ACEL_0727ACEL_0270ACEL_0729ACEL_0726ACEL_0727ACEL_0270ACEL_0731ACEL_0726
ACAU438753 AZC_4355AZC_4356AZC_4357AZC_4359AZC_4360AZC_4355AZC_4356AZC_4359AZC_4360


Organism features enriched in list (features available for 108 out of the 112 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.0003016692
Arrangment:Pairs 0.002798031112
Disease:Dysentery 0.000036066
Disease:Gastroenteritis 0.0034160713
Disease:Melioidosis 0.006213633
Disease:Tuberculosis 0.006213633
GC_Content_Range4:0-40 2.465e-166213
GC_Content_Range4:40-60 2.217e-867224
GC_Content_Range7:0-30 0.0004972147
GC_Content_Range7:30-40 8.230e-125166
GC_Content_Range7:50-60 2.386e-1146107
GC_Content_Range7:60-70 0.007312834134
Genome_Size_Range5:0-2 0.000035313155
Genome_Size_Range5:2-4 0.001510624197
Genome_Size_Range5:4-6 5.614e-960184
Genome_Size_Range9:1-2 0.001806813128
Genome_Size_Range9:2-3 0.009381914120
Genome_Size_Range9:4-5 0.00006193296
Genome_Size_Range9:5-6 0.00046742888
Gram_Stain:Gram_Neg 0.000684376333
Gram_Stain:Gram_Pos 0.000078713150
Motility:No 0.004651418151
Motility:Yes 2.098e-671267
Oxygen_Req:Aerobic 0.001531022185
Oxygen_Req:Anaerobic 0.009208827102
Oxygen_Req:Facultative 0.002959449201
Shape:Coccus 0.0001094482
Shape:Irregular_coccus 0.0010271917
Shape:Rod 0.000461679347



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 165
Effective number of orgs (counting one per cluster within 468 clusters): 127

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM40
VVUL216895 ncbi Vibrio vulnificus CMCP60
VVUL196600 ncbi Vibrio vulnificus YJ0160
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106330
VFIS312309 ncbi Vibrio fischeri ES1140
VCHO345073 ncbi Vibrio cholerae O3951
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TTUR377629 ncbi Teredinibacter turnerae T79010
TPET390874 ncbi Thermotoga petrophila RKU-10
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TLET416591 ncbi Thermotoga lettingae TMO0
TDEN243275 ncbi Treponema denticola ATCC 354050
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen0
STHE322159 ncbi Streptococcus thermophilus LMD-90
STHE299768 ncbi Streptococcus thermophilus CNRZ10660
STHE264199 ncbi Streptococcus thermophilus LMG 183110
SSUI391296 ncbi Streptococcus suis 98HAH330
SSUI391295 ncbi Streptococcus suis 05ZYH330
SSP94122 ncbi Shewanella sp. ANA-30
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370552 ncbi Streptococcus pyogenes MGAS102700
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103940
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SPNE488221 ncbi Streptococcus pneumoniae 705850
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-60
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-140
SPNE171101 ncbi Streptococcus pneumoniae R60
SPNE170187 ncbi Streptococcus pneumoniae G540
SPNE1313 Streptococcus pneumoniae0
SPEA398579 ncbi Shewanella pealeana ATCC 7003451
SMUT210007 ncbi Streptococcus mutans UA1590
SLOI323850 ncbi Shewanella loihica PV-40
SHAL458817 ncbi Shewanella halifaxensis HAW-EB41
SGOR29390 Streptococcus gordonii Challis0
SELO269084 ncbi Synechococcus elongatus PCC 63011
SDEN318161 ncbi Shewanella denitrificans OS2170
SDEG203122 ncbi Saccharophagus degradans 2-400
SBAL402882 ncbi Shewanella baltica OS1850
SBAL399599 ncbi Shewanella baltica OS1950
SAGA211110 ncbi Streptococcus agalactiae NEM3160
SAGA208435 ncbi Streptococcus agalactiae 2603V/R0
SAGA205921 ncbi Streptococcus agalactiae A9090
SACI56780 ncbi Syntrophus aciditrophicus SB0
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332091
RALB246199 Ruminococcus albus 80
PTHE370438 ncbi Pelotomaculum thermopropionicum SI0
PSP117 Pirellula sp.1
PPRO298386 ncbi Photobacterium profundum SS90
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257450
PMUL272843 ncbi Pasteurella multocida multocida Pm700
PGIN242619 ncbi Porphyromonas gingivalis W830
PDIS435591 ncbi Parabacteroides distasonis ATCC 85030
PATL342610 ncbi Pseudoalteromonas atlantica T6c0
PAST100379 Onion yellows phytoplasma0
PAER178306 ncbi Pyrobaculum aerophilum IM21
PACN267747 ncbi Propionibacterium acnes KPA1712020
NMEN374833 ncbi Neisseria meningitidis 0534420
MXAN246197 ncbi Myxococcus xanthus DK 16221
MSYN262723 ncbi Mycoplasma synoviae 530
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E0
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MLEP272631 ncbi Mycobacterium leprae TN0
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MART243272 ncbi Mycoplasma arthritidis 158L3-10
LXYL281090 ncbi Leifsonia xyli xyli CTCB070
LSAK314315 ncbi Lactobacillus sakei sakei 23K0
LREU557436 ncbi Lactobacillus reuteri DSM 200160
LPLA220668 ncbi Lactobacillus plantarum WCFS10
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82930
LLAC272623 ncbi Lactococcus lactis lactis Il14030
LLAC272622 ncbi Lactococcus lactis cremoris SK110
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-000
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LCAS321967 ncbi Lactobacillus casei ATCC 3340
LBRE387344 ncbi Lactobacillus brevis ATCC 3670
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1971
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5501
LACI272621 ncbi Lactobacillus acidophilus NCFM0
KRAD266940 ncbi Kineococcus radiotolerans SRS302161
HSOM228400 ncbi Haemophilus somnus 23360
HSOM205914 ncbi Haemophilus somnus 129PT0
HINF71421 ncbi Haemophilus influenzae Rd KW200
HINF374930 ncbi Haemophilus influenzae PittEE0
HINF281310 ncbi Haemophilus influenzae 86-028NP0
HDUC233412 ncbi Haemophilus ducreyi 35000HP0
GOXY290633 ncbi Gluconobacter oxydans 621H0
GFOR411154 ncbi Gramella forsetii KT08030
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255860
FMAG334413 ncbi Finegoldia magna ATCC 293280
EFAE226185 ncbi Enterococcus faecalis V5830
DOLE96561 ncbi Desulfococcus oleovorans Hxd30
DNOD246195 ncbi Dichelobacter nodosus VCS1703A0
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G200
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPER289380 ncbi Clostridium perfringens SM1010
CPER195103 ncbi Clostridium perfringens ATCC 131240
CPER195102 ncbi Clostridium perfringens 130
CNOV386415 ncbi Clostridium novyi NT0
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3821
CMIC31964 ncbi Clavibacter michiganensis sepedonicus1
CMAQ397948 ncbi Caldivirga maquilingensis IC-1671
CKLU431943 ncbi Clostridium kluyveri DSM 5550
CJEI306537 ncbi Corynebacterium jeikeium K4111
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130321
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CEFF196164 ncbi Corynebacterium efficiens YS-3141
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131291
CDIF272563 ncbi Clostridium difficile 6300
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto0
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6570
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B0
CBOT498213 ncbi Clostridium botulinum B1 str. Okra0
CBOT441772 ncbi Clostridium botulinum F str. Langeland0
CBOT441771 ncbi Clostridium botulinum A str. Hall0
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193970
CBOT36826 Clostridium botulinum A0
CACE272562 ncbi Clostridium acetobutylicum ATCC 8240
CABO218497 ncbi Chlamydophila abortus S26/30
BTUR314724 ncbi Borrelia turicatae 91E1350
BLON206672 ncbi Bifidobacterium longum NCC27050
BHER314723 ncbi Borrelia hermsii DAH0
BGAR290434 ncbi Borrelia garinii PBi0
BBUR224326 ncbi Borrelia burgdorferi B310
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP1667 Arthrobacter sp.1
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL030
APLE416269 ncbi Actinobacillus pleuropneumoniae L200
AORE350688 ncbi Alkaliphilus oremlandii OhILAs0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
AAUR290340 ncbi Arthrobacter aurescens TC10


Names of the homologs of the genes in the group in each of these orgs
  G7306   G7304   G7303   G7300   EG11282   EG10480   EG10478   EG10477   EG10476   
ZMOB264203
VVUL216895
VVUL196600
VPAR223926
VFIS312309
VCHO345073 VC0395_1123
UURE95667
UURE95664
UPAR505682
TWHI218496
TWHI203267
TTUR377629
TPET390874
TPAL243276
TLET416591
TDEN243275
SWOL335541
STHE322159
STHE299768
STHE264199
SSUI391296
SSUI391295
SSP94122
SPYO370554
SPYO370553
SPYO370552
SPYO370551
SPYO319701
SPYO293653
SPYO286636
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SPNE488221
SPNE487214
SPNE487213
SPNE171101
SPNE170187
SPNE1313
SPEA398579 SPEA_3284
SMUT210007
SLOI323850
SHAL458817 SHAL_3361
SGOR29390
SELO269084 SYC2348_C
SDEN318161
SDEG203122
SBAL402882
SBAL399599
SAGA211110
SAGA208435
SAGA205921
SACI56780
RSAL288705 RSAL33209_2210
RALB246199
PTHE370438
PSP117 RB1431
PPRO298386
PPEN278197
PMUL272843
PGIN242619
PDIS435591
PATL342610
PAST100379
PAER178306 PAE2928
PACN267747
NMEN374833
MXAN246197 MXAN_1082
MSYN262723
MSUC221988
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MLEP272631
MHYO295358
MHYO262722
MHYO262719
MGEN243273
MFLO265311
MCAP340047
MART243272
LXYL281090
LSAK314315
LREU557436
LPLA220668
LMES203120
LLAC272623
LLAC272622
LJOH257314
LINT363253
LHEL405566
LGAS324831
LDEL390333
LDEL321956
LCAS321967
LBRE387344
LBOR355277 LBJ_0510
LBOR355276 LBL_2569
LACI272621
KRAD266940 KRAD_0046
HSOM228400
HSOM205914
HINF71421
HINF374930
HINF281310
HDUC233412
GOXY290633
GFOR411154
FNUC190304
FMAG334413
EFAE226185
DOLE96561
DNOD246195
DDES207559
CTRA471473
CTRA471472
CSUL444179
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPER289380
CPER195103
CPER195102
CNOV386415
CMUR243161
CMIC443906 CMM_1089
CMIC31964 CMS1407
CMAQ397948 CMAQ_0428
CKLU431943
CJEI306537 JK1986
CGLU196627 CG0326
CFEL264202
CEFF196164 CE1397
CDIP257309 DIP0293
CDIF272563
CCAV227941
CBOT536232
CBOT515621
CBOT508765
CBOT498213
CBOT441772
CBOT441771
CBOT441770
CBOT36826
CACE272562
CABO218497
BTUR314724
BLON206672
BHER314723
BGAR290434
BBUR224326
BAFZ390236
AYEL322098
AURANTIMONAS
ASP1667 ARTH_4497
APLE434271
APLE416269
AORE350688
ALAI441768
AFUL224325
AAUR290340


Organism features enriched in list (features available for 155 out of the 165 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 1.802e-115292
Disease:Botulism 0.001266255
Disease:Meningitis 0.001706267
Disease:Pharyngitis 0.000021888
Disease:Pneumonia 0.0033010812
Disease:Wide_range_of_infections 3.588e-71111
Disease:bronchitis_and_pneumonitis 0.000021888
Disease:otitis_media 0.004855044
Disease:sinusitis 0.004855044
Endospores:No 0.000010478211
GC_Content_Range4:0-40 9.410e-986213
GC_Content_Range4:60-100 1.260e-1110145
GC_Content_Range7:0-30 3.165e-93147
GC_Content_Range7:30-40 0.006721855166
GC_Content_Range7:40-50 0.001171544117
GC_Content_Range7:50-60 0.000327815107
GC_Content_Range7:60-70 1.361e-127134
Genome_Size_Range5:0-2 5.900e-867155
Genome_Size_Range5:4-6 3.100e-725184
Genome_Size_Range5:6-10 0.0000423247
Genome_Size_Range9:0-1 1.549e-72027
Genome_Size_Range9:1-2 0.001399747128
Genome_Size_Range9:4-5 0.00045851396
Genome_Size_Range9:5-6 0.00088111288
Genome_Size_Range9:6-8 0.0000754138
Gram_Stain:Gram_Neg 0.000085469333
Gram_Stain:Gram_Pos 2.742e-1070150
Habitat:Aquatic 0.00558711591
Habitat:Host-associated 0.000016576206
Habitat:Specialized 0.0009537553
Motility:No 0.000015460151
Motility:Yes 0.000027950267
Optimal_temp.:- 3.760e-645257
Optimal_temp.:30-35 0.001706267
Optimal_temp.:37 7.027e-851106
Oxygen_Req:Aerobic 6.492e-922185
Oxygen_Req:Anaerobic 0.005485237102
Oxygen_Req:Facultative 4.758e-881201
Pathogenic_in:Human 0.000073076213
Pathogenic_in:No 0.001073545226
Pathogenic_in:Swine 0.001266255
Salinity:Non-halophilic 2.067e-852106
Shape:Coccus 0.00011753682
Shape:Sphere 1.739e-61519
Temp._range:Mesophilic 0.0000662141473
Temp._range:Thermophilic 0.0052769335



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ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 48
Effective number of orgs (counting one per cluster within 468 clusters): 41

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
MAEO419665 ncbi Methanococcus aeolicus Nankai-3 2.575e-83449
TPEN368408 ncbi Thermofilum pendens Hrk 5 2.644e-83459
MLAB410358 ncbi Methanocorpusculum labreanum Z 4.201e-83639
PHOR70601 ncbi Pyrococcus horikoshii OT3 7.700e-83889
CMET456442 ncbi Candidatus Methanoregula boonei 6A8 1.300e-74119
PABY272844 ncbi Pyrococcus abyssi GE5 3.340e-74569
PFUR186497 ncbi Pyrococcus furiosus DSM 3638 3.688e-74619
TKOD69014 ncbi Thermococcus kodakarensis KOD1 4.147e-74679
SMAR399550 ncbi Staphylothermus marinus F1 4.541e-72738
MHUN323259 ncbi Methanospirillum hungatei JF-1 5.846e-74859
UMET351160 ncbi uncultured methanogenic archaeon RC-I 2.335e-65659
DETH243164 ncbi Dehalococcoides ethenogenes 195 2.694e-65749
DSP216389 ncbi Dehalococcoides sp. BAV1 3.200e-65859
DSP255470 ncbi Dehalococcoides sp. CBDB1 3.510e-65919
MMAZ192952 ncbi Methanosarcina mazei Go1 4.025e-66009
MACE188937 ncbi Methanosarcina acetivorans C2A 8.665e-66539
CFET360106 ncbi Campylobacter fetus fetus 82-40 0.00002127219
CCON360104 ncbi Campylobacter concisus 13826 0.00002937479
MBUR259564 ncbi Methanococcoides burtonii DSM 6242 0.00003134638
CCUR360105 ncbi Campylobacter curvus 525.92 0.00003427609
NSP387092 ncbi Nitratiruptor sp. SB155-2 0.00005698049
MTBCDC ncbi Mycobacterium tuberculosis CDC1551 0.00010148579
MTBRV ncbi Mycobacterium tuberculosis H37Rv 0.00011158669
MBOV233413 ncbi Mycobacterium bovis AF2122/97 0.00011268679
MTUB336982 ncbi Mycobacterium tuberculosis F11 0.00011628709
SSP387093 ncbi Sulfurovum sp. NBC37-1 0.00011628709
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P2 0.00011628709
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra 0.00011748719
WSUC273121 ncbi Wolinella succinogenes DSM 1740 0.00011998739
MAVI243243 ncbi Mycobacterium avium 104 0.00023399409
TVOL273116 ncbi Thermoplasma volcanium GSS1 0.00212293056
CCHL340177 ncbi Chlorobium chlorochromatii CaD3 0.00227527958
NSP35761 Nocardioides sp. 0.002773912369
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-2901 0.003070812509
APHA212042 ncbi Anaplasma phagocytophilum HZ 0.00325733286
WPIP80849 Wolbachia endosymbiont of Brugia malayi 0.00356033336
DPSY177439 ncbi Desulfotalea psychrophila LSv54 0.003698012769
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough 0.003777312799
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 23270 0.004345312999
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB4 0.004467613039
CTEP194439 ncbi Chlorobium tepidum TLS 0.00458188698
ACEL351607 ncbi Acidothermus cellulolyticus 11B 0.00458188698
MTHE264732 ncbi Moorella thermoacetica ATCC 39073 0.005091313229
NOCE323261 ncbi Nitrosococcus oceani ATCC 19707 0.007118113729
WPIP955 Wolbachia pipientis 0.00808293836
RTYP257363 ncbi Rickettsia typhi Wilmington 0.00871923886
RPRO272947 ncbi Rickettsia prowazekii Madrid E 0.00885133896
MBAR269797 ncbi Methanosarcina barkeri Fusaro 0.00897616267


Names of the homologs of the genes in the group in each of these orgs
  G7306   G7304   G7303   G7300   EG11282   EG10480   EG10478   EG10477   EG10476   
MAEO419665 MAEO_0938MAEO_0306MAEO_0940MAEO_0942MAEO_0943MAEO_0938MAEO_0371MAEO_0942MAEO_0943
TPEN368408 TPEN_0181TPEN_0183TPEN_0185TPEN_0187TPEN_0188TPEN_0181TPEN_0183TPEN_0187TPEN_0188
MLAB410358 MLAB_1622MLAB_0959MLAB_0955MLAB_0960MLAB_0955MLAB_0957MLAB_0959MLAB_0960MLAB_0955
PHOR70601 PH1434PH1437PH1452PH1439PH1431PH1434PH1437PH1439PH1431
CMET456442 MBOO_0026MBOO_1123MBOO_1124MBOO_1126MBOO_1127MBOO_0026MBOO_1123MBOO_1126MBOO_1127
PABY272844 PAB1890PAB1394PAB1888PAB1393PAB1392PAB1396PAB1394PAB1393PAB1392
PFUR186497 PF1432PF1434PF1430PF1435PF1430PF1432PF1434PF1435PF1430
TKOD69014 TK2089TK2091TK1220TK2092TK2087TK2089TK2091TK2092TK2087
SMAR399550 SMAR_0018SMAR_1061SMAR_0645SMAR_1060SMAR_0018SMAR_1061SMAR_1060SMAR_0028
MHUN323259 MHUN_2588MHUN_2590MHUN_1819MHUN_1821MHUN_1822MHUN_2588MHUN_1745MHUN_1821MHUN_1822
UMET351160 RCIX2382RCIX2383RCIX2384RCIX2386RCIX2387RCIX2382RCIX2383RCIX2386RCIX2387
DETH243164 DET_0862DET_1571DET_1572DET_1574DET_1575DET_0862DET_0867DET_1574DET_1575
DSP216389 DEHABAV1_0780DEHABAV1_1317DEHABAV1_1318DEHABAV1_1320DEHABAV1_1321DEHABAV1_0780DEHABAV1_0785DEHABAV1_1320DEHABAV1_1321
DSP255470 CBDBA844CBDBA1653CBDBA1655CBDBA1658CBDBA1659CBDBA844CBDBA850CBDBA1658CBDBA1659
MMAZ192952 MM2322MM2324MM1062MM1060MM1059MM2322MM1063MM1060MM1059
MACE188937 MA4373MA4372MA4371MA4369MA4368MA4373MA4372MA4369MA4368
CFET360106 CFF8240_0125CFF8240_0127CFF8240_0128CFF8240_0131CFF8240_0132CFF8240_0125CFF8240_0127CFF8240_0131CFF8240_0132
CCON360104 CCC13826_0713CCC13826_0711CCC13826_1911CCC13826_1913CCC13826_1914CCC13826_0713CCC13826_0711CCC13826_1913CCC13826_1914
MBUR259564 MBUR_1296MBUR_1294MBUR_0135MBUR_1293MBUR_0135MBUR_1294MBUR_1293MBUR_0135
CCUR360105 CCV52592_1637CCV52592_1635CCV52592_1038CCV52592_1790CCV52592_1791CCV52592_1637CCV52592_1635CCV52592_1790CCV52592_1791
NSP387092 NIS_0714NIS_0715NIS_0716NIS_0718NIS_0719NIS_0714NIS_0715NIS_0718NIS_0719
MTBCDC MT0089MT3236MT0093MT0091MT0090MT0089MT3236MT0091MT0090
MTBRV RV0082RV0087RV0086RV0084RV0083RV0082RV0087RV0084RV0083
MBOV233413 MB0085MB0090MB0089MB0087MB0086MB0085MB0090MB0087MB0086
MTUB336982 TBFG_10083TBFG_10088TBFG_10087TBFG_10085TBFG_10084TBFG_10083TBFG_10088TBFG_10085TBFG_10084
SSP387093 SUN_0264SUN_0263SUN_0259SUN_0260SUN_0259SUN_0845SUN_0846SUN_0260SUN_0259
MBOV410289 BCG_0115BCG_0120BCG_0119BCG_0117BCG_0116BCG_0115BCG_0120BCG_0117BCG_0116
MTUB419947 MRA_0086MRA_0091MRA_0090MRA_0088MRA_0087MRA_0086MRA_0091MRA_0088MRA_0087
WSUC273121 WS1836WS1838WS1839WS1841WS1842WS1836WS1838WS1841WS1842
MAVI243243 MAV_5114MAV_5109MAV_5110MAV_5112MAV_5113MAV_5114MAV_5109MAV_5112MAV_5113
TVOL273116 TVN1115TVN1455TVN1453TVN1113TVN1453TVN1106
CCHL340177 CAG_0635CAG_0637CAG_0642CAG_0638CAG_0643CAG_0635CAG_0637CAG_0638
NSP35761 NOCA_4470NOCA_4465NOCA_4466NOCA_4468NOCA_4469NOCA_4470NOCA_4465NOCA_4468NOCA_4469
CHYD246194 CHY_1830CHY_1827CHY_1832CHY_1831CHY_1832CHY_1830CHY_1827CHY_1831CHY_1832
APHA212042 APH_0520APH_0732APH_0044APH_0520APH_0732APH_0711
WPIP80849 WB_0377WB_0208WB_0024WB_0024WB_0377WB_0208
DPSY177439 DP1042DP1043DP1044DP1046DP1047DP1042DP1318DP1046DP1047
DVUL882 DVU_0432DVU_0430DVU_2286DVU_2287DVU_2286DVU_0432DVU_2291DVU_2287DVU_2286
AFER243159 AFE_0943AFE_0944AFE_0945AFE_0947AFE_0948AFE_0943AFE_0944AFE_0947AFE_0948
TTEN273068 TTE1698TTE1700TTE1702TTE1705TTE1706TTE1698TTE1700TTE1705TTE1706
CTEP194439 CT_0767CT_0769CT_0774CT_0770CT_0775CT_0767CT_0769CT_0770
ACEL351607 ACEL_0727ACEL_0270ACEL_0729ACEL_0726ACEL_0727ACEL_0270ACEL_0731ACEL_0726
MTHE264732 MOTH_2184MOTH_2186MOTH_2188MOTH_2190MOTH_2191MOTH_2184MOTH_2186MOTH_2190MOTH_2191
NOCE323261 NOC_2564NOC_1125NOC_1281NOC_1121NOC_1280NOC_2564NOC_1125NOC_1121NOC_2554
WPIP955 WD_1123WD_0560WD_1107WD_1107WD_1123WD_0560
RTYP257363 RT0345RT0343RT0780RT0345RT0343RT0783
RPRO272947 RP356RP354RP793RP356RP354RP796
MBAR269797 MBAR_A2455MBAR_A0148MBAR_A0151MBAR_A2455MBAR_A0148MBAR_A0151MBAR_A3402


Organism features enriched in list (features available for 45 out of the 48 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Aggregates 0.002725849
Disease:Tuberculosis 0.000431933
Endospores:No 0.006347824211
GC_Content_Range4:40-60 0.002994026224
GC_Content_Range7:40-50 0.000755318117
Genome_Size_Range9:1-2 0.005501217128
Gram_Stain:Gram_Neg 0.000162814333
Habitat:Multiple 0.00922307178
Optimal_temp.:58 0.005835422
Oxygen_Req:Anaerobic 1.239e-925102
Oxygen_Req:Facultative 6.127e-63201
Pathogenic_in:No 0.001424227226
Shape:Irregular_coccus 6.346e-7917
Shape:Rod 0.006489219347
Temp._range:Hyperthermophilic 0.0001220823
Temp._range:Mesophilic 0.000343027473



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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
PWY0-1355 (formate to trimethylamine N-oxide electron transfer)31270.4119
PWY0-1315 (L-lactaldehyde degradation (anaerobic))45330.4022



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G7304   G7303   G7300   EG11282   EG10480   EG10478   EG10477   EG10476   
G73060.9997550.9996170.9995650.9995070.999980.9997520.9997630.999491
G73040.9996120.999640.999560.999730.9999740.9998260.999548
G73030.9996180.9998790.9995990.9995840.9997150.999839
G73000.9996970.999510.9996190.9997950.999668
EG112820.999470.999530.9997540.999892
EG104800.9997290.9997350.999488
EG104780.9998330.999532
EG104770.999726
EG10476



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PAIRWISE BLAST SCORES:

  G7306   G7304   G7303   G7300   EG11282   EG10480   EG10478   EG10477   EG10476   
G73060.0f0----1.2e-72---
G7304-0.0f0----0--
G7303--0.0f0-9.0e-32----
G7300---0.0f0---4.7e-60-
EG11282----0.0f0---3.5e-70
EG104802.0e-77----0.0f0---
EG10478-0----0.0f0--
EG10477---8.1e-72---0.0f0-
EG10476--2.9e-13-1.5e-77---0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- HYDROG3-CPLX (hydrogenase 3) (degree of match pw to cand: 0.667, degree of match cand to pw: 0.444, average score: 0.999)
  Genes in pathway or complex:
   *in cand* 0.9997 0.9995 EG10478 (hycE) HYCELARGE-MONOMER (hydrogenase 3, large subunit)
             0.9983 0.9967 EG10475 (hycB) HYCBSMALL-MONOMER (hydrogenase 3, Fe-S subunit)
   *in cand* 0.9997 0.9995 EG10480 (hycG) HYCG-MONOMER (hydrogenase 3 and formate hydrogenlyase complex, HycG subunit)
             0.9996 0.9993 EG10479 (hycF) HYCF-MONOMER (formate hydrogenlyase complex iron-sulfur protein)
   *in cand* 0.9997 0.9995 EG10476 (hycC) HYCC-MONOMER (hydrogenase 3, membrane subunit)
   *in cand* 0.9998 0.9997 EG10477 (hycD) HYCD-MONOMER (hydrogenase 3, membrane subunit)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9997 0.9995 EG11282 (hyfB) MONOMER0-153 (hydrogenase 4, component B)
   *in cand* 0.9997 0.9995 G7300 (hyfC) MONOMER0-154 (hydrogenase 4, component C)
   *in cand* 0.9997 0.9996 G7303 (hyfF) MONOMER0-143 (hydrogenase 4, component F)
   *in cand* 0.9997 0.9995 G7304 (hyfG) MONOMER0-150 (hydrogenase 4, large subunit)
   *in cand* 0.9997 0.9995 G7306 (hyfI) MONOMER0-151 (hydrogenase 4, small subunit)

- FERMENTATION-PWY (mixed acid fermentation) (degree of match pw to cand: 0.143, degree of match cand to pw: 0.444, average score: 0.597)
  Genes in pathway or complex:
             0.8472 0.6904 EG20173 (pta) PHOSACETYLTRANS-MONOMER (Pta)
             0.8542 0.5483 EG10027 (ackA) ACETATEKINA-MONOMER (propionate kinase / acetate kinase)
             0.3284 0.1507 G7627 (tdcE) KETOBUTFORMLY-MONOMER (2-ketobutyrate formate-lyase / pyruvate formate-lyase 4)
             0.3500 0.1785 EG10701 (pflB) PYRUVFORMLY-MONOMER (PflB)
             0.4690 0.1906 G6775 (adhP) ADHP-MONOMER (ethanol dehydrogenase)
             0.6168 0.4832 EG10031 (adhE) ADHE-MONOMER (AdhE)
             0.4223 0.2154 EG10803 (pykA) PKII-MONOMER (pyruvate kinase II monomer)
             0.4508 0.2555 EG10804 (pykF) PKI-MONOMER (pyruvate kinase I monomer)
             0.7605 0.5960 G592 (ldhA) DLACTDEHYDROGNAD-MONOMER (D-lactate dehydrogenase)
             0.6175 0.3326 EG10358 (fumC) FUMC-MONOMER (fumarase C monomer)
             0.7532 0.5090 EG10357 (fumB) FUMB-MONOMER (fumarase B monomer)
             0.7969 0.5893 EG10356 (fumA) FUMA-MONOMER (fumarase A monomer)
             0.7071 0.5604 EG10576 (mdh) MALATE-DEHASE-MONOMER (Mdh)
             0.2080 0.0771 EG10756 (ppc) PEPCARBOX-MONOMER (Ppc)
   *in cand* 0.9998 0.9997 EG10477 (hycD) HYCD-MONOMER (hydrogenase 3, membrane subunit)
   *in cand* 0.9997 0.9995 EG10476 (hycC) HYCC-MONOMER (hydrogenase 3, membrane subunit)
             0.9996 0.9993 EG10479 (hycF) HYCF-MONOMER (formate hydrogenlyase complex iron-sulfur protein)
   *in cand* 0.9997 0.9995 EG10480 (hycG) HYCG-MONOMER (hydrogenase 3 and formate hydrogenlyase complex, HycG subunit)
             0.9983 0.9967 EG10475 (hycB) HYCBSMALL-MONOMER (hydrogenase 3, Fe-S subunit)
   *in cand* 0.9997 0.9995 EG10478 (hycE) HYCELARGE-MONOMER (hydrogenase 3, large subunit)
                NIL    NIL EG10285 (fdhF) FORMATEDEHYDROGH-MONOMER (formate dehydrogenase H)
             0.1504 0.0834 EG10333 (frdD) FUM-MEMB2 (fumarate reductase membrane protein)
             0.0922 0.0737 EG10332 (frdC) FUM-MEMB1 (fumarate reductase membrane protein)
             0.4900 0.1709 EG10331 (frdB) FUM-FE-S (fumarate reductase iron-sulfur protein)
             0.3700 0.1925 EG10330 (frdA) FUM-FLAVO (fumarate reductase flavoprotein)
             0.6735 0.0975 EG10402 (gltA) CITSYN-MONOMER (citrate synthase monomer)
             0.3252 0.0548 EG12316 (acnB) ACONITATEDEHYDRB-MONOMER (bifunctional aconitate hydratase 2 and 2-methylisocitrate dehydratase)
             0.4114 0.0780 EG10489 (icd) ISOCITDEH-SUBUNIT (Icd)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9997 0.9995 EG11282 (hyfB) MONOMER0-153 (hydrogenase 4, component B)
   *in cand* 0.9997 0.9995 G7300 (hyfC) MONOMER0-154 (hydrogenase 4, component C)
   *in cand* 0.9997 0.9996 G7303 (hyfF) MONOMER0-143 (hydrogenase 4, component F)
   *in cand* 0.9997 0.9995 G7304 (hyfG) MONOMER0-150 (hydrogenase 4, large subunit)
   *in cand* 0.9997 0.9995 G7306 (hyfI) MONOMER0-151 (hydrogenase 4, small subunit)

- FHLMULTI-CPLX (formate hydrogenlyase complex) (degree of match pw to cand: 0.571, degree of match cand to pw: 0.444, average score: 0.999)
  Genes in pathway or complex:
   *in cand* 0.9998 0.9997 EG10477 (hycD) HYCD-MONOMER (hydrogenase 3, membrane subunit)
   *in cand* 0.9997 0.9995 EG10476 (hycC) HYCC-MONOMER (hydrogenase 3, membrane subunit)
             0.9996 0.9993 EG10479 (hycF) HYCF-MONOMER (formate hydrogenlyase complex iron-sulfur protein)
   *in cand* 0.9997 0.9995 EG10480 (hycG) HYCG-MONOMER (hydrogenase 3 and formate hydrogenlyase complex, HycG subunit)
             0.9983 0.9967 EG10475 (hycB) HYCBSMALL-MONOMER (hydrogenase 3, Fe-S subunit)
   *in cand* 0.9997 0.9995 EG10478 (hycE) HYCELARGE-MONOMER (hydrogenase 3, large subunit)
                NIL    NIL EG10285 (fdhF) FORMATEDEHYDROGH-MONOMER (formate dehydrogenase H)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9997 0.9995 EG11282 (hyfB) MONOMER0-153 (hydrogenase 4, component B)
   *in cand* 0.9997 0.9995 G7300 (hyfC) MONOMER0-154 (hydrogenase 4, component C)
   *in cand* 0.9997 0.9996 G7303 (hyfF) MONOMER0-143 (hydrogenase 4, component F)
   *in cand* 0.9997 0.9995 G7304 (hyfG) MONOMER0-150 (hydrogenase 4, large subunit)
   *in cand* 0.9997 0.9995 G7306 (hyfI) MONOMER0-151 (hydrogenase 4, small subunit)

- ANARESP1-PWY (respiration (anaerobic)) (degree of match pw to cand: 0.148, degree of match cand to pw: 0.444, average score: 0.592)
  Genes in pathway or complex:
             0.4223 0.2154 EG10803 (pykA) PKII-MONOMER (pyruvate kinase II monomer)
             0.4508 0.2555 EG10804 (pykF) PKI-MONOMER (pyruvate kinase I monomer)
             0.4136 0.1192 EG10543 (lpd) E3-MONOMER (E3 monomer)
             0.1780 0.0561 EG10025 (aceF) ACEF-LIPOATE (AceF-lipoate)
             0.2626 0.1238 EG10024 (aceE) E1P-MONOMER (subunit of E1p component of pyruvate dehydrogenase complex)
             0.6735 0.0975 EG10402 (gltA) CITSYN-MONOMER (citrate synthase monomer)
             0.3252 0.0548 EG12316 (acnB) ACONITATEDEHYDRB-MONOMER (bifunctional aconitate hydratase 2 and 2-methylisocitrate dehydratase)
             0.4114 0.0780 EG10489 (icd) ISOCITDEH-SUBUNIT (Icd)
             0.2080 0.0771 EG10756 (ppc) PEPCARBOX-MONOMER (Ppc)
             0.7071 0.5604 EG10576 (mdh) MALATE-DEHASE-MONOMER (Mdh)
             0.6175 0.3326 EG10358 (fumC) FUMC-MONOMER (fumarase C monomer)
             0.7532 0.5090 EG10357 (fumB) FUMB-MONOMER (fumarase B monomer)
             0.7969 0.5893 EG10356 (fumA) FUMA-MONOMER (fumarase A monomer)
             0.3284 0.1507 G7627 (tdcE) KETOBUTFORMLY-MONOMER (2-ketobutyrate formate-lyase / pyruvate formate-lyase 4)
             0.3500 0.1785 EG10701 (pflB) PYRUVFORMLY-MONOMER (PflB)
             0.8783 0.5036 EG10258 (eno) ENOLASE-MONOMER (Eno)
   *in cand* 0.9998 0.9997 EG10477 (hycD) HYCD-MONOMER (hydrogenase 3, membrane subunit)
   *in cand* 0.9997 0.9995 EG10476 (hycC) HYCC-MONOMER (hydrogenase 3, membrane subunit)
             0.9996 0.9993 EG10479 (hycF) HYCF-MONOMER (formate hydrogenlyase complex iron-sulfur protein)
   *in cand* 0.9997 0.9995 EG10480 (hycG) HYCG-MONOMER (hydrogenase 3 and formate hydrogenlyase complex, HycG subunit)
             0.9983 0.9967 EG10475 (hycB) HYCBSMALL-MONOMER (hydrogenase 3, Fe-S subunit)
   *in cand* 0.9997 0.9995 EG10478 (hycE) HYCELARGE-MONOMER (hydrogenase 3, large subunit)
                NIL    NIL EG10285 (fdhF) FORMATEDEHYDROGH-MONOMER (formate dehydrogenase H)
             0.1504 0.0834 EG10333 (frdD) FUM-MEMB2 (fumarate reductase membrane protein)
             0.0922 0.0737 EG10332 (frdC) FUM-MEMB1 (fumarate reductase membrane protein)
             0.4900 0.1709 EG10331 (frdB) FUM-FE-S (fumarate reductase iron-sulfur protein)
             0.3700 0.1925 EG10330 (frdA) FUM-FLAVO (fumarate reductase flavoprotein)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9997 0.9995 EG11282 (hyfB) MONOMER0-153 (hydrogenase 4, component B)
   *in cand* 0.9997 0.9995 G7300 (hyfC) MONOMER0-154 (hydrogenase 4, component C)
   *in cand* 0.9997 0.9996 G7303 (hyfF) MONOMER0-143 (hydrogenase 4, component F)
   *in cand* 0.9997 0.9995 G7304 (hyfG) MONOMER0-150 (hydrogenase 4, large subunit)
   *in cand* 0.9997 0.9995 G7306 (hyfI) MONOMER0-151 (hydrogenase 4, small subunit)

- CPLX0-250 (hydrogenase 4) (degree of match pw to cand: 0.556, degree of match cand to pw: 0.556, average score: 0.999)
  Genes in pathway or complex:
             0.9994 0.9989 G7305 (hyfH) MONOMER0-144 (hydrogenase 4, component H)
   *in cand* 0.9997 0.9996 G7303 (hyfF) MONOMER0-143 (hydrogenase 4, component F)
             0.9994 0.9993 G7302 (hyfE) MONOMER0-142 (hydrogenase 4, component E)
             0.9993 0.9986 G7301 (hyfD) MONOMER0-141 (hydrogenase 4, component D)
   *in cand* 0.9997 0.9995 G7300 (hyfC) MONOMER0-154 (hydrogenase 4, component C)
   *in cand* 0.9997 0.9995 EG11282 (hyfB) MONOMER0-153 (hydrogenase 4, component B)
             0.9983 0.9976 EG11150 (hyfA) MONOMER0-152 (hydrogenase 4, component A)
   *in cand* 0.9997 0.9995 G7306 (hyfI) MONOMER0-151 (hydrogenase 4, small subunit)
   *in cand* 0.9997 0.9995 G7304 (hyfG) MONOMER0-150 (hydrogenase 4, large subunit)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9997 0.9995 EG10476 (hycC) HYCC-MONOMER (hydrogenase 3, membrane subunit)
   *in cand* 0.9998 0.9997 EG10477 (hycD) HYCD-MONOMER (hydrogenase 3, membrane subunit)
   *in cand* 0.9997 0.9995 EG10478 (hycE) HYCELARGE-MONOMER (hydrogenase 3, large subunit)
   *in cand* 0.9997 0.9995 EG10480 (hycG) HYCG-MONOMER (hydrogenase 3 and formate hydrogenlyase complex, HycG subunit)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG11282 G7300 G7303 G7304 G7306 (centered at G7303)
EG10476 EG10477 EG10478 EG10480 (centered at EG10477)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7306   G7304   G7303   G7300   EG11282   EG10480   EG10478   EG10477   EG10476   
314/623275/623290/623131/623270/623290/623281/623299/623262/623
AAEO224324:0:Tyes0159--0153-
AAVE397945:0:Tyes0---11--6-
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