CANDIDATE ID: 67

CANDIDATE ID: 67

NUMBER OF GENES: 8
AVERAGE SCORE:    9.9953075e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.2500000e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7340 (yphD) (b2546)
   Products of gene:
     - YPHD-MONOMER (YphD)
     - ABC-60-CPLX (YphD/YphE/YphF ABC transporter)

- EG20252 (xylF) (b3566)
   Products of gene:
     - XYLF-MONOMER (XylF)
     - ABC-33-CPLX (XylF/XylG/XylH xylose ABC transporter)
       Reactions:
        ATP + alpha-D-xylose[periplasmic space] + H2O  ->  ADP + phosphate + alpha-D-xylose[cytosol]

- EG12439 (yjfF) (b4231)
   Products of gene:
     - YJFF-MONOMER (YjfF)
     - ABC-46-CPLX (galactose ABC transporter)
       Reactions:
        ATP + beta-D-galactose[periplasmic space] + H2O  ->  ADP + phosphate + beta-D-galactose[cytosol]

- EG12276 (xylH) (b3568)
   Products of gene:
     - XYLH-MONOMER (XylH)
     - ABC-33-CPLX (XylF/XylG/XylH xylose ABC transporter)
       Reactions:
        ATP + alpha-D-xylose[periplasmic space] + H2O  ->  ADP + phosphate + alpha-D-xylose[cytosol]

- EG12275 (xylG) (b3567)
   Products of gene:
     - XYLG-MONOMER (XylG)
     - ABC-33-CPLX (XylF/XylG/XylH xylose ABC transporter)
       Reactions:
        ATP + alpha-D-xylose[periplasmic space] + H2O  ->  ADP + phosphate + alpha-D-xylose[cytosol]

- EG11958 (alsC) (b4086)
   Products of gene:
     - YJCV-MONOMER (AlsC)
     - ABC-42-CPLX (D-allose ABC transporter)
       Reactions:
        D-allose[periplasmic space] + ATP + H2O  ->  D-allose[cytosol] + ADP + phosphate

- EG10816 (rbsC) (b3750)
   Products of gene:
     - RBSC-MONOMER (RbsC)
     - ABC-28-CPLX (ribose ABC transporter)
       Reactions:
        ATP + beta-D-ribopyranose[periplasmic space] + H2O  ->  ADP + phosphate + beta-D-ribopyranose[cytosol]

- EG10814 (rbsA) (b3749)
   Products of gene:
     - RBSA-MONOMER (RbsA)
     - ABC-28-CPLX (ribose ABC transporter)
       Reactions:
        ATP + beta-D-ribopyranose[periplasmic space] + H2O  ->  ADP + phosphate + beta-D-ribopyranose[cytosol]



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ORGANISMS CONTAINING AT LEAST 7 GENES FROM THE GROUP:

Total number of orgs: 150
Effective number of orgs (counting one per cluster within 468 clusters): 94

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317588
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329538
YPES386656 ncbi Yersinia pestis Pestoides F8
YPES377628 ncbi Yersinia pestis Nepal5168
YPES360102 ncbi Yersinia pestis Antiqua8
YPES349746 ncbi Yersinia pestis Angola8
YPES214092 ncbi Yersinia pestis CO928
YPES187410 ncbi Yersinia pestis KIM 108
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80818
VVUL216895 ncbi Vibrio vulnificus CMCP68
VVUL196600 ncbi Vibrio vulnificus YJ0168
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106338
VFIS312309 ncbi Vibrio fischeri ES1148
VEIS391735 ncbi Verminephrobacter eiseniae EF01-28
VCHO345073 ncbi Vibrio cholerae O3958
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169618
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB48
TSP28240 Thermotoga sp.7
TSP1755 Thermoanaerobacter sp.8
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332238
TMAR243274 ncbi Thermotoga maritima MSB87
TLET416591 ncbi Thermotoga lettingae TMO7
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT28
SSP644076 Silicibacter sp. TrichCH4B7
SSON300269 ncbi Shigella sonnei Ss0467
SPRO399741 ncbi Serratia proteamaculans 5688
SPEA398579 ncbi Shewanella pealeana ATCC 7003457
SMEL266834 ncbi Sinorhizobium meliloti 10218
SMED366394 ncbi Sinorhizobium medicae WSM4198
SHIGELLA ncbi Shigella flexneri 2a str. 2457T8
SHAL458817 ncbi Shewanella halifaxensis HAW-EB48
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14357
SGLO343509 ncbi Sodalis glossinidius morsitans8
SFLE373384 ncbi Shigella flexneri 5 str. 84018
SFLE198214 ncbi Shigella flexneri 2a str. 3018
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23387
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4768
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B678
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT188
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty28
SDYS300267 ncbi Shigella dysenteriae Sd1977
SCO ncbi Streptomyces coelicolor A3(2)8
SBOY300268 ncbi Shigella boydii Sb2278
SAVE227882 ncbi Streptomyces avermitilis MA-46808
SAGA211110 ncbi Streptococcus agalactiae NEM3167
SAGA208435 ncbi Streptococcus agalactiae 2603V/R7
SAGA205921 ncbi Streptococcus agalactiae A9097
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99418
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38418
RFER338969 ncbi Rhodoferax ferrireducens T1187
RETL347834 ncbi Rhizobium etli CFN 428
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30007
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a8
PPRO298386 ncbi Photobacterium profundum SS98
PMUL272843 ncbi Pasteurella multocida multocida Pm708
PMOB403833 ncbi Petrotoga mobilis SJ957
PING357804 ncbi Psychromonas ingrahamii 378
PFLU216595 ncbi Pseudomonas fluorescens SBW257
OIHE221109 ncbi Oceanobacillus iheyensis HTE8318
OANT439375 ncbi Ochrobactrum anthropi ATCC 491888
MTHE264732 ncbi Moorella thermoacetica ATCC 390738
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E8
MSP400668 ncbi Marinomonas sp. MWYL17
MSME246196 ncbi Mycobacterium smegmatis MC2 1557
MLOT266835 ncbi Mesorhizobium loti MAFF3030998
LLAC272623 ncbi Lactococcus lactis lactis Il14037
LACI272621 ncbi Lactobacillus acidophilus NCFM7
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785788
HSOM228400 ncbi Haemophilus somnus 23368
HSOM205914 ncbi Haemophilus somnus 129PT7
HINF71421 ncbi Haemophilus influenzae Rd KW208
HINF374930 ncbi Haemophilus influenzae PittEE8
HINF281310 ncbi Haemophilus influenzae 86-028NP7
HCHE349521 ncbi Hahella chejuensis KCTC 23967
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-28
GKAU235909 ncbi Geobacillus kaustophilus HTA4268
ESP42895 Enterobacter sp.8
EFER585054 ncbi Escherichia fergusonii ATCC 354698
ECOO157 ncbi Escherichia coli O157:H7 EDL9338
ECOL83334 Escherichia coli O157:H78
ECOL585397 ncbi Escherichia coli ED1a8
ECOL585057 ncbi Escherichia coli IAI398
ECOL585056 ncbi Escherichia coli UMN0268
ECOL585055 ncbi Escherichia coli 559898
ECOL585035 ncbi Escherichia coli S888
ECOL585034 ncbi Escherichia coli IAI18
ECOL481805 ncbi Escherichia coli ATCC 87398
ECOL469008 ncbi Escherichia coli BL21(DE3)8
ECOL439855 ncbi Escherichia coli SMS-3-58
ECOL413997 ncbi Escherichia coli B str. REL6068
ECOL409438 ncbi Escherichia coli SE118
ECOL405955 ncbi Escherichia coli APEC O18
ECOL364106 ncbi Escherichia coli UTI898
ECOL362663 ncbi Escherichia coli 5368
ECOL331111 ncbi Escherichia coli E24377A8
ECOL316407 ncbi Escherichia coli K-12 substr. W31108
ECOL199310 ncbi Escherichia coli CFT0738
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10438
DRED349161 ncbi Desulfotomaculum reducens MI-17
CVIO243365 ncbi Chromobacterium violaceum ATCC 124728
CTET212717 ncbi Clostridium tetani E887
CNOV386415 ncbi Clostridium novyi NT8
CDIF272563 ncbi Clostridium difficile 6308
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6578
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B8
BXEN266265 ncbi Burkholderia xenovorans LB4008
BWEI315730 ncbi Bacillus weihenstephanensis KBAB48
BVIE269482 ncbi Burkholderia vietnamiensis G48
BTHU412694 ncbi Bacillus thuringiensis Al Hakam8
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-278
BTHA271848 ncbi Burkholderia thailandensis E2648
BSUI470137 ncbi Brucella suis ATCC 234458
BSUI204722 ncbi Brucella suis 13308
BSUB ncbi Bacillus subtilis subtilis 1688
BSP376 Bradyrhizobium sp.7
BSP36773 Burkholderia sp.8
BPUM315750 ncbi Bacillus pumilus SAFR-0328
BPSE320373 ncbi Burkholderia pseudomallei 6687
BPSE320372 ncbi Burkholderia pseudomallei 1710b7
BPSE272560 ncbi Burkholderia pseudomallei K962437
BOVI236 Brucella ovis8
BMEL359391 ncbi Brucella melitensis biovar Abortus 23088
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M8
BLIC279010 ncbi Bacillus licheniformis ATCC 145808
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1107
BHAL272558 ncbi Bacillus halodurans C-1258
BCLA66692 ncbi Bacillus clausii KSM-K168
BCER572264 ncbi Bacillus cereus 03BB1028
BCER405917 Bacillus cereus W8
BCER315749 ncbi Bacillus cytotoxicus NVH 391-988
BCER288681 ncbi Bacillus cereus E33L8
BCER226900 ncbi Bacillus cereus ATCC 145797
BCEN331272 ncbi Burkholderia cenocepacia HI24248
BCEN331271 ncbi Burkholderia cenocepacia AU 10548
BCAN483179 ncbi Brucella canis ATCC 233658
BANT592021 ncbi Bacillus anthracis A02488
BANT568206 ncbi Bacillus anthracis CDC 6848
BANT261594 ncbi Bacillus anthracis Ames Ancestor8
BANT260799 ncbi Bacillus anthracis Sterne8
BAMY326423 ncbi Bacillus amyloliquefaciens FZB428
BAMB398577 ncbi Burkholderia ambifaria MC40-68
BAMB339670 ncbi Burkholderia ambifaria AMMD8
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9418
AVAR240292 ncbi Anabaena variabilis ATCC 294137
ASP1667 Arthrobacter sp.7
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4497
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL038
APLE416269 ncbi Actinobacillus pleuropneumoniae L208
AMET293826 ncbi Alkaliphilus metalliredigens QYMF8
AHYD196024 Aeromonas hydrophila dhakensis8


Names of the homologs of the genes in the group in each of these orgs
  G7340   EG20252   EG12439   EG12276   EG12275   EG11958   EG10816   EG10814   
YPSE349747 YPSIP31758_4029YPSIP31758_4101YPSIP31758_0151YPSIP31758_4099YPSIP31758_4100YPSIP31758_4029YPSIP31758_1509YPSIP31758_2466
YPSE273123 YPTB3806YPTB3890YPTB0130YPTB3888YPTB3889YPTB3806YPTB2535YPTB1523
YPES386656 YPDSF_3327YPDSF_3779YPDSF_3517YPDSF_3777YPDSF_3778YPDSF_3327YPDSF_1910YPDSF_1469
YPES377628 YPN_3612YPN_3684YPN_0062YPN_3682YPN_3683YPN_3612YPN_2093YPN_2471
YPES360102 YPA_3791YPA_4127YPA_0117YPA_4125YPA_4126YPA_3791YPA_1994YPA_0803
YPES349746 YPANGOLA_A4097YPANGOLA_A4160YPANGOLA_A0479YPANGOLA_A4156YPANGOLA_A4157YPANGOLA_A4097YPANGOLA_A1759YPANGOLA_A3018
YPES214092 YPO3963YPO4037YPO3905YPO4035YPO4036YPO3963YPO2499YPO1508
YPES187410 Y3866Y4056Y0331Y4054Y4055Y3866Y1689Y2661
YENT393305 YE0010YE4121YE0144YE4119YE4120YE0010YE0010YE0009
VVUL216895 VV2_0063VV2_0064VV2_0063VV2_0063VV2_0062VV2_0063VV2_0063VV2_0062
VVUL196600 VVA0570VVA0571VVA0570VVA0570VVA0569VVA0570VVA0570VVA0569
VPAR223926 VPA1085VPA1084VPA1085VPA1085VPA1086VPA1085VPA1085VPA1086
VFIS312309 VF1446VF1447VF1446VF1446VF1445VF1446VF1446VF1445
VEIS391735 VEIS_3417VEIS_0736VEIS_2687VEIS_0739VEIS_0738VEIS_2045VEIS_2045VEIS_1088
VCHO345073 VC0395_0009VC0395_0008VC0395_0009VC0395_0009VC0395_0010VC0395_0009VC0395_0009VC0395_0010
VCHO VCA0129VCA0130VCA0129VCA0129VCA0128VCA0129VCA0129VCA0128
TTEN273068 TTE0205TTE0289TTE0205TTE0292TTE0204TTE0764TTE0205TTE0204
TSP28240 TRQ2_0835TRQ2_0974TRQ2_0974TRQ2_0975TRQ2_0974TRQ2_0974TRQ2_0975
TSP1755 TETH514_0158TETH514_0155TETH514_0165TETH514_0158TETH514_0157TETH514_0165TETH514_0165TETH514_0164
TPSE340099 TETH39_2039TETH39_2038TETH39_2039TETH39_2039TETH39_2040TETH39_2039TETH39_2039TETH39_2040
TMAR243274 TM_0955TM_0955TM_0955TM_0956TM_0955TM_0955TM_0956
TLET416591 TLET_0389TLET_0390TLET_1328TLET_1327TLET_0185TLET_1328TLET_1327
STYP99287 STM3883STM3884STM3883STM3883STM3882STM3883STM3883STM3882
SSP644076 SCH4B_0703SCH4B_0742SCH4B_0703SCH4B_3690SCH4B_3689SCH4B_0703SCH4B_0703
SSON300269 SSO_2629SSO_4412SSO_2629SSO_3919SSO_3920SSO_3920SSO_3919
SPRO399741 SPRO_4227SPRO_0099SPRO_4765SPRO_0101SPRO_0100SPRO_4899SPRO_4899SPRO_4900
SPEA398579 SPEA_0516SPEA_0516SPEA_2283SPEA_0515SPEA_0516SPEA_0516SPEA_0515
SMEL266834 SMB21375SMB20902SMB21590SMB20893SMB20894SMC02772SMB20352SMC02325
SMED366394 SMED_4767SMED_4467SMED_4911SMED_4475SMED_4474SMED_5745SMED_3767SMED_0226
SHIGELLA YPHDXYLFRBSCXYLHXYLGRBSCRBSCMGLA
SHAL458817 SHAL_0580SHAL_0581SHAL_0580SHAL_2011SHAL_0579SHAL_0580SHAL_0580SHAL_0579
SHAE279808 SH0178SH0179SH0178SH0178SH0178SH0178SH0177
SGLO343509 SG0613SG0176SG2401SG0965SG0964SG0613SG0613SG0964
SFLE373384 SFV_2594SFV_3974SFV_4261SFV_2594SFV_3973SFV_3749SFV_3749SFV_3973
SFLE198214 AAN44091.1AAN45059.1AAN45678.1AAN45061.1AAN45060.1AAN45272.1AAN45272.1AAN43755.1
SERY405948 SACE_5660SACE_5660SACE_5660SACE_5659SACE_1882SACE_5660SACE_5659
SENT454169 SEHA_C4216SEHA_C4217SEHA_C4216SEHA_C4216SEHA_C4215SEHA_C4216SEHA_C4216SEHA_C4215
SENT321314 SCH_3796SCH_3797SCH_3796SCH_3796SCH_3795SCH_3796SCH_3796SCH_3795
SENT220341 STY3895STY3894STY3895STY3895STY3896STY3895STY3895STY3896
SENT209261 T3636T3635T3636T3636T3637T3636T3636T3637
SDYS300267 SDY_3997SDY_4130SDY_4249SDY_3997SDY_3997SDY_3997SDY_1121
SCO SCO2747SCO6009SCO2747SCO2406SCO2405SCO2747SCO2747SCO2746
SBOY300268 SBO_2572SBO_3574SBO_4215SBO_3576SBO_3575SBO_3764SBO_3764SBO_3575
SAVE227882 SAV1827SAV2247SAV968SAV5767SAV5768SAV5318SAV5318SAV7416
SAGA211110 GBS0114GBS0114GBS0114GBS0115GBS0114GBS0114GBS0115
SAGA208435 SAG_0115SAG_0115SAG_0115SAG_0116SAG_0115SAG_0115SAG_0116
SAGA205921 SAK_0167SAK_0167SAK_0167SAK_0168SAK_0167SAK_0167SAK_0168
RXYL266117 RXYL_1889RXYL_0948RXYL_3002RXYL_1682RXYL_0946RXYL_3002RXYL_0947RXYL_0946
RLEG216596 PRL90223RL3624RL2379RL3615RL3616RL1746RL1746RL4654
RFER338969 RFER_0439RFER_0439RFER_3130RFER_3129RFER_0439RFER_3130RFER_3129
RETL347834 RHE_CH03189RHE_CH03172RHE_CH02088RHE_CH03163RHE_CH03164RHE_CH01211RHE_PF00034RHE_CH03989
PSYR223283 PSPTO_3003PSPTO_2400PSPTO_3005PSPTO_3004PSPTO_3488PSPTO_3488PSPTO_3489
PSYR205918 PSYR_2570PSYR_2884PSYR_2570PSYR_2886PSYR_2885PSYR_2570PSYR_2570PSYR_3264
PPRO298386 PBPRB1558PBPRA0462PBPRB1558PBPRA0464PBPRA0463PBPRB1558PBPRB1558PBPRB1557
PMUL272843 PM0154PM1325PM1378PM0154PM0155PM0154PM0154PM0155
PMOB403833 PMOB_1602PMOB_0923PMOB_0922PMOB_1602PMOB_0921PMOB_1602PMOB_0922
PING357804 PING_0342PING_0343PING_0342PING_0342PING_0341PING_0342PING_0342PING_0341
PFLU216595 PFLU2300PFLU3726PFLU2298PFLU2299PFLU3994PFLU3994PFLU2584
OIHE221109 OB2573OB2572OB2573OB2573OB2574OB2573OB2573OB2574
OANT439375 OANT_0290OANT_3414OANT_1415OANT_3416OANT_3415OANT_4066OANT_4066OANT_3347
MTHE264732 MOTH_0614MOTH_2022MOTH_0614MOTH_2020MOTH_2021MOTH_0614MOTH_0614MOTH_0613
MSUC221988 MS0199MS1612MS1610MS0199MS0062MS0199MS0199MS0062
MSP400668 MMWYL1_1867MMWYL1_1865MMWYL1_3532MMWYL1_1867MMWYL1_1866MMWYL1_3108MMWYL1_1987
MSME246196 MSMEG_4001MSMEG_6020MSMEG_1709MSMEG_1706MSMEG_1705MSMEG_4171MSMEG_4171
MLOT266835 MLL1013MLL3713MLL7665MLL5656MLL5657MLL2145MLL7011MLL3598
LLAC272623 L83296L83296L83296L84240L83296L83296L84240
LACI272621 LBA1481LBA1482LBA1482LBA1483LBA1482LBA1482LBA1483
KPNE272620 GKPORF_B3497GKPORF_B3282GKPORF_B3987GKPORF_B3284GKPORF_B3283GKPORF_B3497GKPORF_B3497GKPORF_B3496
HSOM228400 HSM_0091HSM_0935HSM_0432HSM_0933HSM_0934HSM_0558HSM_0091HSM_0090
HSOM205914 HS_0584HS_0586HS_1579HS_0584HS_0585HS_0584HS_0769
HINF71421 HI_0503HI_1111HI_0503HI_1109HI_1110HI_0503HI_0503HI_0502
HINF374930 CGSHIEE_06515CGSHIEE_06500CGSHIEE_00475CGSHIEE_06515CGSHIEE_00480CGSHIEE_00475CGSHIEE_00475CGSHIEE_00480
HINF281310 NTHI0631NTHI0631NTHI0631NTHI0630NTHI0631NTHI0631NTHI0630
HCHE349521 HCH_01166HCH_02470HCH_02470HCH_01167HCH_02470HCH_02470HCH_01167
GTHE420246 GTNG_3171GTNG_1801GTNG_1814GTNG_1799GTNG_1800GTNG_3171GTNG_3171GTNG_3172
GKAU235909 GK3227GK1881GK3227GK1879GK1880GK3227GK3227GK3228
ESP42895 ENT638_4114ENT638_0155ENT638_0415ENT638_0153ENT638_0289ENT638_0288ENT638_4114ENT638_4115
EFER585054 EFER_4049EFER_0342EFER_4309EFER_0341EFER_4048EFER_4284EFER_4049EFER_4048
ECOO157 YPHDXYLFYJFFXYLHXYLGZ5690RBSCRBSA
ECOL83334 ECS3412ECS4449ECS5208ECS4451ECS4450ECS5072ECS4692ECS4691
ECOL585397 ECED1_2973ECED1_4251ECED1_5086ECED1_4254ECED1_4439ECED1_4820ECED1_4440ECED1_4439
ECOL585057 ECIAI39_2749ECIAI39_4078ECIAI39_2749ECIAI39_4080ECIAI39_4079ECIAI39_4510ECIAI39_4355ECIAI39_4354
ECOL585056 ECUMN_2866ECUMN_4077ECUMN_4764ECUMN_4079ECUMN_4078ECUMN_4280ECUMN_4280ECUMN_4279
ECOL585055 EC55989_2832EC55989_4021EC55989_4789EC55989_4023EC55989_4022EC55989_4225EC55989_4225EC55989_4224
ECOL585035 ECS88_2716ECS88_3984ECS88_4821ECS88_3986ECS88_3985ECS88_4172ECS88_4172ECS88_4171
ECOL585034 ECIAI1_2599ECIAI1_3731ECIAI1_4463ECIAI1_3733ECIAI1_3732ECIAI1_3934ECIAI1_3934ECIAI1_3933
ECOL481805 ECOLC_1131ECOLC_0148ECOLC_3780ECOLC_0146ECOLC_0147ECOLC_3940ECOLC_4244ECOLC_4245
ECOL469008 ECBD_1138ECBD_0168ECBD_3803ECBD_0166ECBD_4281ECBD_3944ECBD_4280ECBD_4281
ECOL439855 ECSMS35_2699ECSMS35_3889ECSMS35_4708ECSMS35_3891ECSMS35_3890ECSMS35_4552ECSMS35_4118ECSMS35_4117
ECOL413997 ECB_02438ECB_03418ECB_04099ECB_03420ECB_03635ECB_03958ECB_03636ECB_03635
ECOL409438 ECSE_2833ECSE_3841ECSE_4536ECSE_3843ECSE_3842ECSE_4384ECSE_4040ECSE_4039
ECOL405955 APECO1_3985APECO1_2883APECO1_2161APECO1_28812APECO1_2882APECO1_2364APECO1_2713APECO1_2714
ECOL364106 UTI89_C2865UTI89_C4107UTI89_C4835UTI89_C4109UTI89_C4108UTI89_C4305UTI89_C4305UTI89_C4304
ECOL362663 ECP_2547ECP_3669ECP_4480ECP_3671ECP_3670ECP_3344ECP_3671ECP_3948
ECOL331111 ECE24377A_2831ECE24377A_4062ECE24377A_4800ECE24377A_4064ECE24377A_4063ECE24377A_4266ECE24377A_4266ECE24377A_4265
ECOL316407 ECK2543:JW2530:B2546ECK3555:JW3538:B3566ECK4226:JW5754:B4231ECK3557:JW3540:B3568ECK3556:JW3539:B3567ECK4079:JW4047:B4086ECK3744:JW3729:B3750ECK3743:JW3728:B3749
ECOL199310 C3068C4386C5328C4388C4387C5092C4678C4677
ECAR218491 ECA0012ECA0098ECA4233ECA0100ECA0099ECA1461ECA0012ECA0011
DRED349161 DRED_2522DRED_2523DRED_2523DRED_2524DRED_2523DRED_2523DRED_2524
CVIO243365 CV_3017CV_3016CV_3017CV_3017CV_3018CV_3017CV_3017CV_3018
CTET212717 CTC_00906CTC_02349CTC_02349CTC_02350CTC_02349CTC_02349CTC_02350
CNOV386415 NT01CX_0163NT01CX_0162NT01CX_0163NT01CX_0163NT01CX_0164NT01CX_0163NT01CX_0163NT01CX_0164
CDIF272563 CD1588CD1589CD0302CD1588CD0301CD1588CD0302CD0301
CBOT515621 CLJ_B1313CLJ_B1315CLJ_B1313CLJ_B1313CLJ_B1312CLJ_B1313CLJ_B1313CLJ_B1312
CBOT508765 CLL_A1530CLL_A1531CLL_A1530CLL_A1530CLL_A1529CLL_A1530CLL_A1530CLL_A1529
BXEN266265 BXE_B1397BXE_B2621BXE_B1397BXE_B2619BXE_B2620BXE_B1397BXE_C1349BXE_C1350
BWEI315730 BCERKBAB4_0582BCERKBAB4_0583BCERKBAB4_0582BCERKBAB4_0582BCERKBAB4_0581BCERKBAB4_0582BCERKBAB4_0582BCERKBAB4_0581
BVIE269482 BCEP1808_3838BCEP1808_6449BCEP1808_6549BCEP1808_6447BCEP1808_6448BCEP1808_1507BCEP1808_3381BCEP1808_1389
BTHU412694 BALH_0611BALH_0612BALH_0611BALH_0611BALH_0609BALH_0611BALH_0611BALH_0609
BTHU281309 BT9727_0579BT9727_0580BT9727_0579BT9727_0579BT9727_0578BT9727_0579BT9727_0579BT9727_0578
BTHA271848 BTH_I2433BTH_I2339BTH_I2345BTH_I2341BTH_I2340BTH_I2433BTH_I2433BTH_II0211
BSUI470137 BSUIS_A1690BSUIS_B1379BSUIS_A1690BSUIS_B1381BSUIS_B0929BSUIS_A1690BSUIS_A1690BSUIS_A1691
BSUI204722 BR_1631BR_A1150BR_1631BR_A1152BR_A1151BR_1631BR_1631BR_1632
BSUB BSU35950BSU35960BSU35950BSU35950BSU35940BSU35950BSU35950BSU35940
BSP376 BRADO1817BRADO1810BRADO1819BRADO1818BRADO1819BRADO1809BRADO1394
BSP36773 BCEP18194_B0047BCEP18194_A4568BCEP18194_A4682BCEP18194_B0625BCEP18194_A4683BCEP18194_B0886BCEP18194_B0886BCEP18194_A4569
BPUM315750 BPUM_3267BPUM_3268BPUM_3267BPUM_3267BPUM_3266BPUM_3267BPUM_3267BPUM_3266
BPSE320373 BURPS668_A0457BURPS668_A0456BURPS668_A0285BURPS668_A0286BURPS668_1909BURPS668_1909BURPS668_A0286
BPSE320372 BURPS1710B_B2112BURPS1710B_B2111BURPS1710B_B1955BURPS1710B_B1956BURPS1710B_A2230BURPS1710B_A2230BURPS1710B_B1956
BPSE272560 BPSS0257BPSS0256BPSS0141BPSS0142BPSL1791BPSL1791BPSS0142
BOVI236 GBOORF1646GBOORFA0262GBOORF1646GBOORFA1147GBOORFA0965GBOORF1646GBOORF1646GBOORF1647
BMEL359391 BAB1_1649BAB2_1109BAB1_1649BAB2_1111BAB2_1110BAB1_1649BAB1_1649BAB2_1110
BMEL224914 BMEI0392BMEII0146BMEI0392BMEII0144BMEII0145BMEI0392BMEI0392BMEII0145
BLIC279010 BL02442BL00167BL01748BL01748BL01747BL02442BL02442BL02441
BJAP224911 BLR1122BLR3208BLR3203BLR3210BLR3209BLL2676BLR1122
BHAL272558 BH3731BH3442BH3731BH3440BH3441BH3731BH3731BH3730
BCLA66692 ABC3545ABC0409ABC0411ABC0411ABC0410ABC3545ABC3545ABC3546
BCER572264 BCA_0706BCA_0707BCA_0706BCA_0706BCA_0705BCA_0706BCA_0706BCA_0705
BCER405917 BCE_0736BCE_0737BCE_0736BCE_0736BCE_0735BCE_0736BCE_0736BCE_0735
BCER315749 BCER98_0563BCER98_0564BCER98_0563BCER98_0563BCER98_0562BCER98_0563BCER98_0563BCER98_0562
BCER288681 BCE33L0578BCE33L0579BCE33L0578BCE33L0578BCE33L0577BCE33L0578BCE33L0578BCE33L0577
BCER226900 BC_0663BC_0663BC_0663BC_0662BC_0663BC_0663BC_0662
BCEN331272 BCEN2424_5639BCEN2424_6738BCEN2424_5989BCEN2424_6736BCEN2424_6737BCEN2424_4818BCEN2424_4818BCEN2424_1425
BCEN331271 BCEN_5220BCEN_6504BCEN_5624BCEN_6502BCEN_6503BCEN_3549BCEN_3549BCEN_0943
BCAN483179 BCAN_A1668BCAN_B1179BCAN_A1668BCAN_B1181BCAN_B1180BCAN_A1668BCAN_A1668BCAN_A1669
BANT592021 BAA_0752BAA_0753BAA_0752BAA_0752BAA_0751BAA_0752BAA_0752BAA_0751
BANT568206 BAMEG_3918BAMEG_3917BAMEG_3918BAMEG_3918BAMEG_3919BAMEG_3918BAMEG_3918BAMEG_3919
BANT261594 GBAA0668GBAA0669GBAA0668GBAA0668GBAA0667GBAA0668GBAA0668GBAA0667
BANT260799 BAS0635BAS0636BAS0635BAS0635BAS0634BAS0635BAS0635BAS0634
BAMY326423 RBAM_033120RBAM_033130RBAM_033120RBAM_033120RBAM_033110RBAM_033120RBAM_033120RBAM_033110
BAMB398577 BAMMC406_1253BAMMC406_6034BAMMC406_5927BAMMC406_6036BAMMC406_6035BAMMC406_4722BAMMC406_4722BAMMC406_1344
BAMB339670 BAMB_6336BAMB_6334BAMB_6196BAMB_6336BAMB_6335BAMB_4199BAMB_4199BAMB_4447
BABO262698 BRUAB1_1619BRUAB2_1087BRUAB1_1619BRUAB2_1089BRUAB2_1088BRUAB1_1619BRUAB1_1619BRUAB2_1088
AVAR240292 AVA_2173AVA_2171AVA_2173AVA_2172AVA_2173AVA_2173AVA_2172
ASP1667 ARTH_1826ARTH_1102ARTH_1826ARTH_1103ARTH_1104ARTH_1826ARTH_1826
ASAL382245 ASA_1969ASA_2137ASA_1969ASA_0215ASA_1969ASA_1969ASA_2395
APLE434271 APJL_1702APJL_1956APJL_1702APJL_1958APJL_1957APJL_1702APJL_1702APJL_1701
APLE416269 APL_1671APL_1909APL_1671APL_1911APL_1910APL_1671APL_1671APL_1670
AMET293826 AMET_0458AMET_2814AMET_3797AMET_2812AMET_2813AMET_0588AMET_0588AMET_2813
AHYD196024 AHA_2311AHA_2312AHA_2311AHA_2311AHA_2310AHA_2311AHA_2311AHA_2310


Organism features enriched in list (features available for 139 out of the 150 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Pairs 0.001222139112
Disease:Anthrax 0.003125844
Disease:Brucellosis 0.000728855
Disease:Bubonic_plague 0.000169066
Disease:Dysentery 0.000169066
Disease:Gastroenteritis 0.00006121013
Endospores:No 0.000066432211
Endospores:Yes 2.597e-72953
GC_Content_Range4:0-40 0.000219734213
GC_Content_Range4:40-60 2.826e-881224
GC_Content_Range4:60-100 0.004991324145
GC_Content_Range7:30-40 0.006169729166
GC_Content_Range7:50-60 1.796e-747107
GC_Content_Range7:60-70 0.001740120134
Genome_Size_Range5:0-2 2.181e-155155
Genome_Size_Range5:2-4 0.000632932197
Genome_Size_Range5:4-6 4.095e-1176184
Genome_Size_Range5:6-10 9.135e-72647
Genome_Size_Range9:1-2 1.427e-115128
Genome_Size_Range9:2-3 0.003274918120
Genome_Size_Range9:4-5 0.00001054096
Genome_Size_Range9:5-6 0.00005243688
Genome_Size_Range9:6-8 0.00005062038
Genome_Size_Range9:8-10 0.006456769
Gram_Stain:Gram_Neg 0.001231194333
Habitat:Aquatic 0.00304411291
Habitat:Multiple 0.007268553178
Habitat:Terrestrial 0.00039831631
Motility:No 4.994e-715151
Motility:Yes 5.992e-686267
Oxygen_Req:Aerobic 0.005460233185
Oxygen_Req:Anaerobic 0.002615714102
Oxygen_Req:Facultative 6.020e-1282201
Pathogenic_in:Human 0.000010672213
Pathogenic_in:No 0.000474638226
Shape:Coccus 0.0001002782
Shape:Rod 5.093e-12116347
Temp._range:Mesophilic 0.0066600122473



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 402
Effective number of orgs (counting one per cluster within 468 clusters): 315

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM40
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A0
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110180
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103310
XFAS405440 ncbi Xylella fastidiosa M120
XFAS183190 ncbi Xylella fastidiosa Temecula10
XFAS160492 ncbi Xylella fastidiosa 9a5c0
XCAM487884 Xanthomonas campestris pv. paulliniae0
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-100
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80040
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339130
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3060
XAUT78245 ncbi Xanthobacter autotrophicus Py20
WSUC273121 ncbi Wolinella succinogenes DSM 17400
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTUR377629 ncbi Teredinibacter turnerae T79010
TTHE300852 ncbi Thermus thermophilus HB80
TTHE262724 ncbi Thermus thermophilus HB270
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TERY203124 ncbi Trichodesmium erythraeum IMS1011
TELO197221 ncbi Thermosynechococcus elongatus BP-10
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12510
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252590
TDEN243275 ncbi Treponema denticola ATCC 354050
TCRU317025 ncbi Thiomicrospira crunogena XCL-20
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen0
STOK273063 ncbi Sulfolobus tokodaii 70
STHE322159 ncbi Streptococcus thermophilus LMD-90
STHE299768 ncbi Streptococcus thermophilus CNRZ10660
STHE264199 ncbi Streptococcus thermophilus LMG 183110
SSUI391296 ncbi Streptococcus suis 98HAH330
SSUI391295 ncbi Streptococcus suis 05ZYH330
SSP94122 ncbi Shewanella sp. ANA-31
SSP84588 ncbi Synechococcus sp. WH 81020
SSP64471 ncbi Synechococcus sp. CC93110
SSP387093 ncbi Sulfurovum sp. NBC37-10
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)0
SSP321327 ncbi Synechococcus sp. JA-3-3Ab0
SSP1148 ncbi Synechocystis sp. PCC 68030
SSP1131 Synechococcus sp. CC96050
SSOL273057 ncbi Sulfolobus solfataricus P20
SSED425104 ncbi Shewanella sediminis HAW-EB30
SRUB309807 ncbi Salinibacter ruber DSM 138550
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370552 ncbi Streptococcus pyogenes MGAS102700
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103940
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SPNE488221 ncbi Streptococcus pneumoniae 705850
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-60
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-140
SPNE171101 ncbi Streptococcus pneumoniae R60
SPNE170187 ncbi Streptococcus pneumoniae G540
SPNE1313 Streptococcus pneumoniae0
SONE211586 ncbi Shewanella oneidensis MR-10
SMUT210007 ncbi Streptococcus mutans UA1590
SMAR399550 ncbi Staphylothermus marinus F10
SLOI323850 ncbi Shewanella loihica PV-40
SLAC55218 Ruegeria lacuscaerulensis0
SGOR29390 Streptococcus gordonii Challis1
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB0
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122280
SEPI176279 ncbi Staphylococcus epidermidis RP62A0
SELO269084 ncbi Synechococcus elongatus PCC 63010
SDEN318161 ncbi Shewanella denitrificans OS2170
SDEG203122 ncbi Saccharophagus degradans 2-401
SBAL402882 ncbi Shewanella baltica OS1850
SBAL399599 ncbi Shewanella baltica OS1950
SAUR93062 ncbi Staphylococcus aureus aureus COL0
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83250
SAUR426430 ncbi Staphylococcus aureus aureus Newman0
SAUR418127 ncbi Staphylococcus aureus aureus Mu30
SAUR367830 Staphylococcus aureus aureus USA3000
SAUR359787 ncbi Staphylococcus aureus aureus JH10
SAUR359786 ncbi Staphylococcus aureus aureus JH90
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4760
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2520
SAUR273036 ncbi Staphylococcus aureus RF1220
SAUR196620 ncbi Staphylococcus aureus aureus MW20
SAUR158879 ncbi Staphylococcus aureus aureus N3150
SAUR158878 ncbi Staphylococcus aureus aureus Mu500
SALA317655 ncbi Sphingopyxis alaskensis RB22560
SACI56780 ncbi Syntrophus aciditrophicus SB0
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RTYP257363 ncbi Rickettsia typhi Wilmington0
RSP357808 ncbi Roseiflexus sp. RS-11
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RPAL316058 ncbi Rhodopseudomonas palustris HaA20
RPAL316057 ncbi Rhodopseudomonas palustris BisB50
RPAL316056 ncbi Rhodopseudomonas palustris BisB180
RPAL316055 ncbi Rhodopseudomonas palustris BisA530
RPAL258594 ncbi Rhodopseudomonas palustris CGA0090
RMET266264 ncbi Ralstonia metallidurans CH340
RMAS416276 ncbi Rickettsia massiliae MTU50
RFEL315456 ncbi Rickettsia felis URRWXCal20
RCON272944 ncbi Rickettsia conorii Malish 70
RCAS383372 ncbi Roseiflexus castenholzii DSM 139410
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RALB246199 Ruminococcus albus 80
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97900
PTHE370438 ncbi Pelotomaculum thermopropionicum SI1
PSTU379731 ncbi Pseudomonas stutzeri A15010
PSP56811 Psychrobacter sp.0
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-10
PSP296591 ncbi Polaromonas sp. JS6661
PRUM264731 ncbi Prevotella ruminicola 230
PPUT76869 ncbi Pseudomonas putida GB-10
PPUT351746 ncbi Pseudomonas putida F10
PPUT160488 ncbi Pseudomonas putida KT24400
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257450
PNAP365044 ncbi Polaromonas naphthalenivorans CJ21
PMEN399739 ncbi Pseudomonas mendocina ymp0
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74547 ncbi Prochlorococcus marinus MIT 93130
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR59920 ncbi Prochlorococcus marinus NATL2A0
PMAR167555 ncbi Prochlorococcus marinus NATL1A0
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13750
PMAR146891 ncbi Prochlorococcus marinus AS96010
PLUT319225 ncbi Chlorobium luteolum DSM 2730
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 170
PHOR70601 ncbi Pyrococcus horikoshii OT30
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1250
PGIN242619 ncbi Porphyromonas gingivalis W830
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PENT384676 ncbi Pseudomonas entomophila L480
PDIS435591 ncbi Parabacteroides distasonis ATCC 85030
PCRY335284 ncbi Psychrobacter cryohalolentis K50
PCAR338963 ncbi Pelobacter carbinolicus DSM 23800
PATL342610 ncbi Pseudoalteromonas atlantica T6c0
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PARC259536 ncbi Psychrobacter arcticus 273-40
PAER208964 ncbi Pseudomonas aeruginosa PAO10
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA140
PAER178306 ncbi Pyrobaculum aerophilum IM20
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
OCAR504832 ncbi Oligotropha carboxidovorans OM50
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2550
NSP387092 ncbi Nitratiruptor sp. SB155-20
NSP103690 ncbi Nostoc sp. PCC 71200
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
NOCE323261 ncbi Nitrosococcus oceani ATCC 197070
NMUL323848 ncbi Nitrosospira multiformis ATCC 251960
NMEN374833 ncbi Neisseria meningitidis 0534420
NMEN272831 ncbi Neisseria meningitidis FAM180
NMEN122587 ncbi Neisseria meningitidis Z24910
NMEN122586 ncbi Neisseria meningitidis MC580
NHAM323097 ncbi Nitrobacter hamburgensis X140
NGON242231 ncbi Neisseria gonorrhoeae FA 10900
NFAR247156 ncbi Nocardia farcinica IFM 101520
NEUT335283 ncbi Nitrosomonas eutropha C910
NEUR228410 ncbi Nitrosomonas europaea ATCC 197180
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124440
MXAN246197 ncbi Myxococcus xanthus DK 16220
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra0
MTUB336982 ncbi Mycobacterium tuberculosis F110
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MTBRV ncbi Mycobacterium tuberculosis H37Rv0
MTBCDC ncbi Mycobacterium tuberculosis CDC15510
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSP409 Methylobacterium sp.0
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP1
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPET420662 ncbi Methylibium petroleiphilum PM10
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K1
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR394221 ncbi Maricaulis maris MCS100
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MMAG342108 ncbi Magnetospirillum magneticum AMB-10
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK0
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MFLA265072 ncbi Methylobacillus flagellatus KT0
MEXT419610 ncbi Methylobacterium extorquens PA10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MCAP243233 ncbi Methylococcus capsulatus Bath0
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P20
MBOV233413 ncbi Mycobacterium bovis AF2122/970
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MAVI243243 ncbi Mycobacterium avium 1040
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAQU351348 ncbi Marinobacter aquaeolei VT80
MAER449447 ncbi Microcystis aeruginosa NIES-8430
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
MABS561007 ncbi Mycobacterium abscessus ATCC 199770
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53340
LSPH444177 ncbi Lysinibacillus sphaericus C3-410
LSAK314315 ncbi Lactobacillus sakei sakei 23K0
LREU557436 ncbi Lactobacillus reuteri DSM 200160
LPNE400673 ncbi Legionella pneumophila Corby0
LPNE297246 ncbi Legionella pneumophila Paris0
LPNE297245 ncbi Legionella pneumophila Lens0
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 10
LPLA220668 ncbi Lactobacillus plantarum WCFS10
LMON265669 ncbi Listeria monocytogenes 4b F23650
LMON169963 ncbi Listeria monocytogenes EGD-e0
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82930
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-000
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1300
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566010
LINN272626 ncbi Listeria innocua Clip112620
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LBRE387344 ncbi Lactobacillus brevis ATCC 3670
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1970
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5500
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)0
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)0
JSP375286 ncbi Janthinobacterium sp. Marseille0
ILOI283942 ncbi Idiomarina loihiensis L2TR0
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSAL478009 ncbi Halobacterium salinarum R10
HPYL85963 ncbi Helicobacter pylori J990
HPYL357544 ncbi Helicobacter pylori HPAG10
HPY ncbi Helicobacter pylori 266950
HNEP81032 Hyphomonas neptunium0
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMAR272569 ncbi Haloarcula marismortui ATCC 430490
HHEP235279 ncbi Helicobacter hepaticus ATCC 514490
HHAL349124 ncbi Halorhodospira halophila SL10
HDUC233412 ncbi Haemophilus ducreyi 35000HP0
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HARS204773 ncbi Herminiimonas arsenicoxydans0
HACI382638 ncbi Helicobacter acinonychis Sheeba0
GURA351605 ncbi Geobacter uraniireducens Rf40
GSUL243231 ncbi Geobacter sulfurreducens PCA0
GOXY290633 ncbi Gluconobacter oxydans 621H0
GMET269799 ncbi Geobacter metallireducens GS-150
GFOR411154 ncbi Gramella forsetii KT08030
GBET391165 ncbi Granulibacter bethesdensis CGDNIH10
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-000
FTUL418136 ncbi Francisella tularensis tularensis WY96-34180
FTUL401614 ncbi Francisella novicida U1120
FTUL393115 ncbi Francisella tularensis tularensis FSC1980
FTUL393011 ncbi Francisella tularensis holarctica OSU180
FTUL351581 Francisella tularensis holarctica FSC2000
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S850
FSP106370 ncbi Frankia sp. CcI30
FRANT ncbi Francisella tularensis tularensis SCHU S40
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250170
FMAG334413 ncbi Finegoldia magna ATCC 293280
FJOH376686 ncbi Flavobacterium johnsoniae UW1010
FALN326424 ncbi Frankia alni ACN14a0
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ELIT314225 ncbi Erythrobacter litoralis HTCC25940
EFAE226185 ncbi Enterococcus faecalis V5830
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough0
DSP255470 ncbi Dehalococcoides sp. CBDB10
DSP216389 ncbi Dehalococcoides sp. BAV10
DRAD243230 ncbi Deinococcus radiodurans R10
DPSY177439 ncbi Desulfotalea psychrophila LSv540
DOLE96561 ncbi Desulfococcus oleovorans Hxd30
DNOD246195 ncbi Dichelobacter nodosus VCS1703A0
DHAF138119 ncbi Desulfitobacterium hafniense Y510
DETH243164 ncbi Dehalococcoides ethenogenes 1950
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G200
DARO159087 ncbi Dechloromonas aromatica RCB0
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA0
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTEP194439 ncbi Chlorobium tepidum TLS0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CSP78 Caulobacter sp.0
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)0
CPSY167879 ncbi Colwellia psychrerythraea 34H0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE250
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10620
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CKLU431943 ncbi Clostridium kluyveri DSM 5550
CJEJ407148 ncbi Campylobacter jejuni jejuni 811160
CJEJ360109 ncbi Campylobacter jejuni doylei 269.970
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1760
CJEJ195099 ncbi Campylobacter jejuni RM12210
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111680
CJEI306537 ncbi Corynebacterium jeikeium K4110
CJAP155077 Cellvibrio japonicus1
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29010
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334060
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3810
CFET360106 ncbi Campylobacter fetus fetus 82-400
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CEFF196164 ncbi Corynebacterium efficiens YS-3140
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131290
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C0
CCUR360105 ncbi Campylobacter curvus 525.920
CCON360104 ncbi Campylobacter concisus 138260
CCHL340177 ncbi Chlorobium chlorochromatii CaD30
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1110
CBUR360115 ncbi Coxiella burnetii RSA 3310
CBUR227377 ncbi Coxiella burnetii RSA 4930
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto0
CBOT498213 ncbi Clostridium botulinum B1 str. Okra0
CBOT441772 ncbi Clostridium botulinum F str. Langeland0
CBOT441771 ncbi Clostridium botulinum A str. Hall0
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193970
CBOT36826 Clostridium botulinum A0
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN0
CBLO203907 ncbi Candidatus Blochmannia floridanus0
CACE272562 ncbi Clostridium acetobutylicum ATCC 8241
CABO218497 ncbi Chlamydophila abortus S26/30
BTUR314724 ncbi Borrelia turicatae 91E1350
BTRI382640 ncbi Bartonella tribocorum CIP 1054760
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54820
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)0
BQUI283165 ncbi Bartonella quintana Toulouse0
BPET94624 Bordetella petrii0
BPER257313 ncbi Bordetella pertussis Tohama I0
BPAR257311 ncbi Bordetella parapertussis 128220
BHER314723 ncbi Borrelia hermsii DAH0
BHEN283166 ncbi Bartonella henselae Houston-10
BGAR290434 ncbi Borrelia garinii PBi0
BFRA295405 ncbi Bacteroides fragilis YCH460
BFRA272559 ncbi Bacteroides fragilis NCTC 93430
BCIC186490 Candidatus Baumannia cicadellinicola0
BBUR224326 ncbi Borrelia burgdorferi B310
BBRO257310 ncbi Bordetella bronchiseptica RB500
BBAC360095 ncbi Bartonella bacilliformis KC5830
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1000
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)0
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP76114 ncbi Aromatoleum aromaticum EbN10
ASP62977 ncbi Acinetobacter sp. ADP10
ASP62928 ncbi Azoarcus sp. BH720
ASP232721 ncbi Acidovorax sp. JS420
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K10
AORE350688 ncbi Alkaliphilus oremlandii OhILAs0
ANAE240017 Actinomyces oris MG10
AMAR329726 ncbi Acaryochloris marina MBIC110170
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232700
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-10
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C0
ACAU438753 ncbi Azorhizobium caulinodans ORS 5711
ABUT367737 ncbi Arcobacter butzleri RM40180
ABOR393595 ncbi Alcanivorax borkumensis SK20
ABAU360910 ncbi Bordetella avium 197N0
AAEO224324 ncbi Aquifex aeolicus VF50


Names of the homologs of the genes in the group in each of these orgs
  G7340   EG20252   EG12439   EG12276   EG12275   EG11958   EG10816   EG10814   
ZMOB264203
XORY360094
XORY342109
XORY291331
XFAS405440
XFAS183190
XFAS160492
XCAM487884
XCAM316273
XCAM314565
XCAM190485
XAXO190486
XAUT78245
WSUC273121
WPIP955
WPIP80849
UURE95667
UURE95664
UPAR505682
UMET351160
TVOL273116
TTUR377629
TTHE300852
TTHE262724
TPEN368408
TPAL243276
TKOD69014
TERY203124 TERY_0800
TELO197221
TDEN326298
TDEN292415
TDEN243275
TCRU317025
TACI273075
SWOL335541
STOK273063
STHE322159
STHE299768
STHE264199
SSUI391296
SSUI391295
SSP94122 SHEWANA3_2076
SSP84588
SSP64471
SSP387093
SSP321332
SSP321327
SSP1148
SSP1131
SSOL273057
SSED425104
SRUB309807
SPYO370554
SPYO370553
SPYO370552
SPYO370551
SPYO319701
SPYO293653
SPYO286636
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SPNE488221
SPNE487214
SPNE487213
SPNE171101
SPNE170187
SPNE1313
SONE211586
SMUT210007
SMAR399550
SLOI323850
SLAC55218
SGOR29390 SGO_1897
SFUM335543
SEPI176280
SEPI176279
SELO269084
SDEN318161
SDEG203122 SDE_0769
SBAL402882
SBAL399599
SAUR93062
SAUR93061
SAUR426430
SAUR418127
SAUR367830
SAUR359787
SAUR359786
SAUR282459
SAUR282458
SAUR273036
SAUR196620
SAUR158879
SAUR158878
SALA317655
SACI56780
SACI330779
RTYP257363
RSP357808 ROSERS_2725
RRIC452659
RRIC392021
RPRO272947
RPAL316058
RPAL316057
RPAL316056
RPAL316055
RPAL258594
RMET266264
RMAS416276
RFEL315456
RCON272944
RCAS383372
RCAN293613
RBEL391896
RBEL336407
RALB246199
RAKA293614
PTOR263820
PTHE370438 PTH_2739
PSTU379731
PSP56811
PSP312153
PSP296591 BPRO_3204
PRUM264731
PPUT76869
PPUT351746
PPUT160488
PPEN278197
PNAP365044 PNAP_2604
PMEN399739
PMAR93060
PMAR74547
PMAR74546
PMAR59920
PMAR167555
PMAR167546
PMAR167542
PMAR167540
PMAR167539
PMAR146891
PLUT319225
PISL384616
PINT246198
PHOR70601
PHAL326442
PGIN242619
PFUR186497
PENT384676
PDIS435591
PCRY335284
PCAR338963
PATL342610
PAST100379
PARS340102
PARC259536
PAER208964
PAER208963
PAER178306
PABY272844
OTSU357244
OCAR504832
NWIN323098
NSP387092
NSP103690
NSEN222891
NPHA348780
NOCE323261
NMUL323848
NMEN374833
NMEN272831
NMEN122587
NMEN122586
NHAM323097
NGON242231
NFAR247156
NEUT335283
NEUR228410
NARO279238
MXAN246197
MTUB419947
MTUB336982
MTHE349307
MTHE187420
MTBRV
MTBCDC
MSYN262723
MSTA339860
MSP409
MSED399549
MPUL272635 MYPU_3440
MPNE272634
MPET420662
MPEN272633
MMYC272632
MMOB267748 MMOB0140
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR394221
MMAR368407
MMAR267377
MMAG342108
MLEP272631
MLAB410358
MKAN190192
MJAN243232
MHUN323259
MGIL350054
MGEN243273
MFLO265311
MFLA265072
MEXT419610
MCAP340047
MCAP243233
MBUR259564
MBOV410289
MBOV233413
MBAR269797
MAVI243243
MART243272
MAQU351348
MAER449447
MAEO419665
MACE188937
MABS561007
LWEL386043
LSPH444177
LSAK314315
LREU557436
LPNE400673
LPNE297246
LPNE297245
LPNE272624
LPLA220668
LMON265669
LMON169963
LMES203120
LJOH257314
LINT363253
LINT267671
LINT189518
LINN272626
LHEL405566
LGAS324831
LDEL390333
LDEL321956
LBRE387344
LBOR355277
LBOR355276
LBIF456481
LBIF355278
JSP375286
ILOI283942
IHOS453591
HWAL362976
HSP64091
HSAL478009
HPYL85963
HPYL357544
HPY
HNEP81032
HMUK485914
HMAR272569
HHEP235279
HHAL349124
HDUC233412
HBUT415426
HARS204773
HACI382638
GURA351605
GSUL243231
GOXY290633
GMET269799
GFOR411154
GBET391165
FTUL458234
FTUL418136
FTUL401614
FTUL393115
FTUL393011
FTUL351581
FSUC59374
FSP106370
FRANT
FPHI484022
FMAG334413
FJOH376686
FALN326424
ERUM302409
ERUM254945
ELIT314225
EFAE226185
ECHA205920
ECAN269484
DVUL882
DSP255470
DSP216389
DRAD243230
DPSY177439
DOLE96561
DNOD246195
DHAF138119
DETH243164
DDES207559
DARO159087
CVES412965
CTRA471473
CTRA471472
CTEP194439
CSUL444179
CSP78
CRUT413404
CPSY167879
CPRO264201
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPEL335992
CMUR243161
CMET456442
CMAQ397948
CKOR374847
CKLU431943
CJEJ407148
CJEJ360109
CJEJ354242
CJEJ195099
CJEJ192222
CJEI306537
CJAP155077 CJA_3022
CHYD246194
CHUT269798
CHOM360107
CFET360106
CFEL264202
CEFF196164
CDIP257309
CDES477974
CCUR360105
CCON360104
CCHL340177
CCAV227941
CBUR434922
CBUR360115
CBUR227377
CBOT536232
CBOT498213
CBOT441772
CBOT441771
CBOT441770
CBOT36826
CBLO291272
CBLO203907
CACE272562 CAC1351
CABO218497
BTUR314724
BTRI382640
BTHE226186
BSP107806
BQUI283165
BPET94624
BPER257313
BPAR257311
BHER314723
BHEN283166
BGAR290434
BFRA295405
BFRA272559
BCIC186490
BBUR224326
BBRO257310
BBAC360095
BBAC264462
BAPH372461
BAPH198804
BAFZ390236
AYEL322098
AURANTIMONAS
ASP76114
ASP62977
ASP62928
ASP232721
APHA212042
APER272557
AORE350688
ANAE240017
AMAR329726
AMAR234826
ALAI441768
AFUL224325
AFER243159
AEHR187272
ADEH290397
ACAU438753 AZC_1417
ABUT367737
ABOR393595
ABAU360910
AAEO224324


Organism features enriched in list (features available for 377 out of the 402 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Pairs 0.000649958112
Disease:Gastroenteritis 0.0021334313
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 0.00784631111
Disease:Wide_range_of_infections 0.00784631111
Endospores:No 0.0007993153211
Endospores:Yes 2.472e-91453
GC_Content_Range4:0-40 4.275e-8167213
GC_Content_Range4:40-60 0.0013599129224
GC_Content_Range4:60-100 0.001889080145
GC_Content_Range7:30-40 2.224e-7133166
GC_Content_Range7:50-60 0.000029751107
GC_Content_Range7:60-70 0.007598576134
Genome_Size_Range5:0-2 1.106e-19143155
Genome_Size_Range5:2-4 0.0019738142197
Genome_Size_Range5:4-6 1.184e-1379184
Genome_Size_Range5:6-10 6.454e-81347
Genome_Size_Range9:1-2 9.546e-19121128
Genome_Size_Range9:2-3 0.000302493120
Genome_Size_Range9:4-5 2.762e-74096
Genome_Size_Range9:5-6 0.00001193988
Genome_Size_Range9:6-8 3.137e-61138
Genome_Size_Range9:8-10 0.009910329
Gram_Stain:Gram_Pos 0.001787583150
Habitat:Aquatic 0.00249147091
Habitat:Host-associated 0.0048720146206
Habitat:Multiple 0.000457398178
Habitat:Specialized 0.00324844353
Habitat:Terrestrial 0.0000293931
Motility:Yes 0.0003649154267
Optimal_temp.:30-37 0.00347561718
Oxygen_Req:Anaerobic 0.001893778102
Oxygen_Req:Facultative 4.953e-7103201
Shape:Coccus 0.00015726782
Shape:Irregular_coccus 0.00053051717
Shape:Rod 2.783e-15181347
Shape:Spiral 4.281e-63334
Temp._range:Mesophilic 0.0025940294473



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ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 4
Effective number of orgs (counting one per cluster within 468 clusters): 4

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
CNOV386415 ncbi Clostridium novyi NT 0.003664410898
LACI272621 ncbi Lactobacillus acidophilus NCFM 0.00410526847
BXEN266265 ncbi Burkholderia xenovorans LB400 0.005000111328
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 33223 0.007931611998


Names of the homologs of the genes in the group in each of these orgs
  G7340   EG20252   EG12439   EG12276   EG12275   EG11958   EG10816   EG10814   
CNOV386415 NT01CX_0163NT01CX_0162NT01CX_0163NT01CX_0163NT01CX_0164NT01CX_0163NT01CX_0163NT01CX_0164
LACI272621 LBA1481LBA1482LBA1482LBA1483LBA1482LBA1482LBA1483
BXEN266265 BXE_B1397BXE_B2621BXE_B1397BXE_B2619BXE_B2620BXE_B1397BXE_C1349BXE_C1350
TPSE340099 TETH39_2039TETH39_2038TETH39_2039TETH39_2039TETH39_2040TETH39_2039TETH39_2039TETH39_2040


Organism features enriched in list (features available for 4 out of the 4 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Pathogenic_in:Plants 0.006861111



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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
GALACTITOLCAT-PWY (galactitol degradation)73630.5302
PWY-6196 (serine racemization)102740.5016
GLUTAMINDEG-PWY (glutamine degradation I)1911070.4968
XYLCAT-PWY (xylose degradation I)2171140.4866
PWY-6374 (vibriobactin biosynthesis)77610.4843
GLUCUROCAT-PWY (β-D-glucuronide and D-glucuronate degradation)2081080.4611
RIBOKIN-PWY (ribose degradation)2791270.4517
GLUTDEG-PWY (glutamate degradation II)1941020.4483
TREDEGLOW-PWY (trehalose degradation I (low osmolarity))121760.4448
GALACTCAT-PWY (D-galactonate degradation)104660.4124
PWY-5861 (superpathway of demethylmenaquinone-8 biosynthesis)50410.4002



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG20252   EG12439   EG12276   EG12275   EG11958   EG10816   EG10814   
G73400.9993020.9995620.9994390.9993210.9996810.9996660.999527
EG202520.9993660.9997510.9997350.9993270.999330.999321
EG124390.9994370.9994430.9996320.9996270.999478
EG122760.999810.9994840.9994640.999392
EG122750.999470.9995260.999631
EG119580.9997910.999637
EG108160.999711
EG10814



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PAIRWISE BLAST SCORES:

  G7340   EG20252   EG12439   EG12276   EG12275   EG11958   EG10816   EG10814   
G73400.0f0-1.3e-271.1e-30--1.9e-33-
EG20252-0.0f0------
EG124394.6e-30-0.0f0---1.7e-30-
EG122761.2e-32--0.0f0--4.6e-31-
EG12275----0.0f0--3.0e-113
EG11958-----0.0f06.9e-43-
EG10816---1.8e-38--0.0f0-
EG10814----3.0e-113--0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- ABC-33-CPLX (XylF/XylG/XylH xylose ABC transporter) (degree of match pw to cand: 1.000, degree of match cand to pw: 0.375, average score: 1.000)
  Genes in pathway or complex:
   *in cand* 0.9995 0.9993 EG20252 (xylF) XYLF-MONOMER (XylF)
   *in cand* 0.9996 0.9994 EG12276 (xylH) XYLH-MONOMER (XylH)
   *in cand* 0.9996 0.9993 EG12275 (xylG) XYLG-MONOMER (XylG)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9996 0.9993 EG10814 (rbsA) RBSA-MONOMER (RbsA)
   *in cand* 0.9996 0.9993 EG10816 (rbsC) RBSC-MONOMER (RbsC)
   *in cand* 0.9996 0.9993 EG11958 (alsC) YJCV-MONOMER (AlsC)
   *in cand* 0.9996 0.9994 EG12439 (yjfF) YJFF-MONOMER (YjfF)
   *in cand* 0.9996 0.9993 G7340 (yphD) YPHD-MONOMER (YphD)

- ABC-28-CPLX (ribose ABC transporter) (degree of match pw to cand: 0.667, degree of match cand to pw: 0.250, average score: 1.000)
  Genes in pathway or complex:
             0.9995 0.9993 EG10815 (rbsB) RBSB-MONOMER (RbsB)
   *in cand* 0.9996 0.9993 EG10816 (rbsC) RBSC-MONOMER (RbsC)
   *in cand* 0.9996 0.9993 EG10814 (rbsA) RBSA-MONOMER (RbsA)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9996 0.9993 EG11958 (alsC) YJCV-MONOMER (AlsC)
   *in cand* 0.9996 0.9993 EG12275 (xylG) XYLG-MONOMER (XylG)
   *in cand* 0.9996 0.9994 EG12276 (xylH) XYLH-MONOMER (XylH)
   *in cand* 0.9996 0.9994 EG12439 (yjfF) YJFF-MONOMER (YjfF)
   *in cand* 0.9995 0.9993 EG20252 (xylF) XYLF-MONOMER (XylF)
   *in cand* 0.9996 0.9993 G7340 (yphD) YPHD-MONOMER (YphD)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG12275 EG12276 EG20252 (centered at EG12275)
EG11958 (centered at EG11958)
EG12439 (centered at EG12439)
G7340 (centered at G7340)
EG10814 EG10816 (centered at EG10816)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7340   EG20252   EG12439   EG12276   EG12275   EG11958   EG10816   EG10814   
163/623197/623191/623194/623192/623194/623177/623176/623
AAUR290340:2:Tyes-8491811818510517-
AAVE397945:0:Tyes-5034---
ABAC204669:0:Tyes-2-010-1
ACAU438753:0:Tyes-----0--
ACEL351607:0:Tyes082------
ACRY349163:8:Tyes-147317341471-0560-
AHYD196024:0:Tyes12110110
AMET293826:0:Tyes023073267230523061291292306
APLE416269:0:Tyes12461248247110
APLE434271:0:Tno12631265264110
ASAL382245:5:Tyes1699-186016990169916992110
ASP1667:3:Tyes736073612736736-
AVAR240292:3:Tyes202-1221
BABO262698:0:Tno-0-21--1
BABO262698:1:Tno0-0--00-
BAMB339670:1:Tno1401380140139---
BAMB339670:2:Tno-----00246
BAMB398577:1:Tno-1060108107---
BAMB398577:2:Tno-----00-
BAMB398577:3:Tno0------88
BAMY326423:0:Tyes12110110
BANT260799:0:Tno12110110
BANT261594:2:Tno12110110
BANT568206:2:Tyes10112112
BANT592021:2:Tno12110110
BCAN483179:0:Tno-0-21---
BCAN483179:1:Tno0-0--001
BCEN331271:0:Tno-8870885886---
BCEN331271:1:Tno1655----00-
BCEN331271:2:Tno-------0
BCEN331272:1:Tyes-7460744745---
BCEN331272:2:Tyes820----00-
BCEN331272:3:Tyes-------0
BCER226900:1:Tyes1-110110
BCER288681:0:Tno12110110
BCER315749:1:Tyes12110110
BCER405917:1:Tyes12110110
BCER572264:1:Tno12110110
BCLA66692:0:Tyes31750221317531753176
BHAL272558:0:Tyes291229101291291290
BJAP224911:0:Fyes0210020952102210115680-
BLIC279010:0:Tyes34770177177176347734773476
BLON206672:0:Tyes-1645016471646---
BMAL243160:1:Tno---0-001149
BMAL320388:0:Tno-0------
BMAL320388:1:Tno---1211-121112110
BMAL320389:0:Tyes-0------
BMAL320389:1:Tyes---0-002392
BMEL224914:0:Tno-2-01--1
BMEL224914:1:Tno0-0--00-
BMEL359391:0:Tno-0-21--1
BMEL359391:1:Tno0-0--00-
BOVI236:0:Tyes-0-693538---
BOVI236:1:Tyes0-0--001
BPSE272560:0:Tyes-11611501--1
BPSE272560:1:Tyes-----00-
BPSE320372:0:Tno-15715601--1
BPSE320372:1:Tno-----00-
BPSE320373:0:Tno-17117001--1
BPSE320373:1:Tno-----00-
BPUM315750:0:Tyes12110110
BSP36773:1:Tyes0--578-840840-
BSP36773:2:Tyes-0115-116--1
BSP376:0:Tyes-4023954044034043940
BSUB:0:Tyes12110110
BSUI204722:0:Tyes-0-21---
BSUI204722:1:Tyes0-0--001
BSUI470137:0:Tno-434-4350---
BSUI470137:1:Tno0-0--001
BTHA271848:0:Tno-------0
BTHA271848:1:Tno9406219494-
BTHU281309:1:Tno12110110
BTHU412694:1:Tno12110110
BVIE269482:5:Tyes-210001---
BVIE269482:6:Tyes452-----0-
BVIE269482:7:Tyes-----117-0
BWEI315730:4:Tyes12110110
BXEN266265:0:Tyes------01
BXEN266265:1:Tyes120201202211202--
CACE272562:1:Tyes-0------
CAULO:0:Tyes202--22-
CBEI290402:0:Tyes-0203021--2536
CBOT508765:1:Tyes12110110
CBOT515621:2:Tyes13110110
CDIF272563:1:Tyes13201321113200132010
CGLU196627:0:Tyes0100-00-
CJAP155077:0:Tyes--0-----
CMIC31964:2:Tyes-82800829---
CMIC443906:2:Tyes-8410467842---
CNOV386415:0:Tyes10112112
CPER195102:1:Tyes--001001
CPER195103:0:Tno--001001
CPER289380:3:Tyes-0--2--2
CPHY357809:0:Tyes-447212445010-868
CSAL290398:0:Tyes0100-00-
CSP501479:2:Fyes20------
CSP501479:7:Fyes---01---
CTET212717:0:Tyes0-132513251326132513251326
CVIO243365:0:Tyes10112112
DGEO319795:0:Tyes279280279279--2790
DRED349161:0:Tyes-0112112
DSHI398580:5:Tyes-1-0-435-436
ECAR218491:0:Tyes18942909190147710
ECOL199310:0:Tno01298222513001299199315861585
ECOL316407:0:Tno011491664114711481518959960
ECOL331111:6:Tno01187188811891188138713871386
ECOL362663:0:Tno0112419221126112580211261401
ECOL364106:1:Tno01232195112341233143014301429
ECOL405955:2:Tyes01101185111031102164312751274
ECOL409438:6:Tyes01032175910341033160312311230
ECOL413997:0:Tno099616989971208155412091208
ECOL439855:4:Tno01139191911411140176713651364
ECOL469008:0:Tno9861362304125376741244125
ECOL481805:0:Tno10012364701380741354136
ECOL585034:0:Tno01110180811121111130813081307
ECOL585035:0:Tno01228201812301229141214121411
ECOL585055:0:Tno01168191311701169136413641363
ECOL585056:2:Tno01203188212051204140114011400
ECOL585057:0:Tno01348013501349178616201619
ECOL585397:0:Tno01247205212481430181114311430
ECOL83334:0:Tno01067186010691068172013111310
ECOLI:0:Tno01028170510301029155812191218
ECOO157:0:Tno01084183010861085168513231322
EFER585054:1:Tyes36741392403673390036743673
ESP42895:1:Tyes40082270014114040084009
FNOD381764:0:Tyes-0-21---
FNUC190304:0:Tyes----0--0
FSP1855:0:Tyes-2-0----
GKAU235909:1:Tyes13732137301137313731374
GTHE420246:1:Tyes135721501135713571358
GVIO251221:0:Tyes0-00-00-
HAUR316274:2:Tyes155122410155115501551--
HCHE349521:0:Tyes-0125412541125412541
HINF281310:0:Tyes1-110110
HINF374930:0:Tyes10531052010531001
HINF71421:0:Tno15961594595110
HMOD498761:0:Tyes-2-10110
HSOM205914:1:Tyes02988010183-
HSOM228400:0:Tno186234586086147710
JSP290400:1:Tyes505----502-0
KPNE272620:2:Tyes214067421214214213
KRAD266940:2:Fyes02780308030790--
LACI272621:0:Tyes-0112112
LCAS321967:1:Tyes121--110
LCHO395495:0:Tyes-2-010114115
LLAC272622:5:Tyes-0--1--1
LLAC272623:0:Tyes0-001001
LXYL281090:0:Tyes-2181010---
MHYO262719:0:Tyes--0-293---
MHYO262722:0:Tno-2840-285---
MHYO295358:0:Tno--0-387---
MLOT266835:2:Tyes0209252813617361887147522003
MMOB267748:0:Tyes----0---
MPUL272635:0:Tyes----0---
MSME246196:0:Tyes2279427441024492449-
MSP164756:1:Tno-0---2--
MSP164757:0:Tno-0---2--
MSP189918:2:Tyes-0---2--
MSP266779:3:Tyes-22892885102885--
MSP400668:0:Tyes201692211268121-
MSUC221988:0:Tyes1411603160114101411410
MTHE264732:0:Tyes11375113731374110
MVAN350058:0:Tyes-2-0----
NSP35761:1:Tyes-22943123123110--
OANT439375:4:Tyes-67-69687167160
OANT439375:5:Tyes0-1147-----
OIHE221109:0:Tyes10112112
PACN267747:0:Tyes010--00-
PFLU205922:0:Tyes-2-011847-1848
PFLU216595:1:Tyes-213740116381638265
PFLU220664:0:Tyes-0--1221
PING357804:0:Tyes12110110
PLUM243265:0:Fyes1-1-0110
PMOB403833:0:Tyes6602166006601-
PMUL272843:1:Tyes01171122401001
PNAP365044:8:Tyes-----0--
PPRO298386:1:Tyes1-1--110
PPRO298386:2:Tyes-0-21---
PSP117:0:Tyes1---0110
PSP296591:2:Tyes-----0--
PSYR205918:0:Tyes0311031331200694
PSYR223283:2:Tyes-5910593592106710671068
PTHE370438:0:Tyes-0------
RDEN375451:4:Tyes--0--2424-2425
RETL347834:4:Tyes------0-
RETL347834:5:Tyes19611944874193519360-2751
REUT264198:2:Tyes--0-----
REUT264198:3:Tyes-0--2112
REUT381666:1:Tyes-21-0110
RFER338969:1:Tyes0-026912690026912690
RLEG216596:2:Tyes0-------
RLEG216596:6:Tyes-187163318621863002901
RPOM246200:1:Tyes-0-1----
RRUB269796:1:Tyes0-00-00-
RSAL288705:0:Tyes10112---
RSOL267608:0:Tyes20-21---
RSOL267608:1:Tyes------10
RSP101510:3:Fyes5920592--5925923843
RSP357808:0:Tyes-------0
RSPH272943:3:Tyes0-0-----
RSPH272943:4:Tyes-1-0----
RSPH349101:1:Tno0-0-----
RSPH349101:2:Tno-1-0----
RSPH349102:5:Tyes-1-0----
RXYL266117:0:Tyes946220477500204710
SAGA205921:0:Tno0-001001
SAGA208435:0:Tno0-001001
SAGA211110:0:Tyes0-001001
SARE391037:0:Tyes-0-2----
SAVE227882:1:Fyes8641284048714872441444146536
SBOY300268:1:Tyes0959156196196011381138960
SCO:2:Fyes349364834910349349348
SDEG203122:0:Tyes--0-----
SDYS300267:1:Tyes2685280829182685-268526850
SENT209261:0:Tno10112112
SENT220341:0:Tno10112112
SENT295319:0:Tno-1--0--0
SENT321314:2:Tno12110110
SENT454169:2:Tno12110110
SERY405948:0:Tyes366436643664-3663036643663
SFLE198214:0:Tyes3441342199013441343155615560
SFLE373384:0:Tno01317158701316109910991316
SGLO343509:3:Tyes45102281811810451451810
SGOR29390:0:Tyes-0------
SHAE279808:0:Tyes1211-110
SHAL458817:0:Tyes12114840110
SHIGELLA:0:Tno3511622141616201621141614160
SMED366394:1:Tyes-----0--
SMED366394:2:Tyes9846871114695694-0-
SMED366394:3:Tyes-------0
SMEL266834:1:Tyes615860692849850-0-
SMEL266834:2:Tyes-----0-623
SPEA398579:0:Tno1-118390110
SPRO399741:1:Tyes42020474621489048904891
SSAP342451:2:Tyes0-00-001
SSON300269:1:Tyes0-167801223122412241223
SSP292414:1:Tyes-0-1-81--
SSP292414:2:Tyes----0---
SSP644076:3:Fyes---10---
SSP644076:4:Fyes0390--00-
SSP94122:1:Tyes--0-----
STHE292459:0:Tyes-2--10-1
STRO369723:0:Tyes-0-2----
STYP99287:1:Tyes12110110
TERY203124:0:Tyes----0---
TFUS269800:0:Tyes-2-0----
TLET416591:0:Tyes-20420511551154011551154
TMAR243274:0:Tyes0-001001
TPET390874:0:Tno3987--09869860
TPSE340099:0:Tyes10112112
TROS309801:0:Tyes----0180-0
TSP1755:0:Tyes30103210109
TSP28240:0:Tyes0-137137138137137138
TTEN273068:0:Tyes180183053110
TWHI203267:0:Tyes-0112---
TWHI218496:0:Tno-2110---
VCHO:1:Fyes12110110
VCHO345073:0:Tno10112112
VEIS391735:1:Tyes2662019383212971297355
VFIS312309:2:Tyes12110110
VPAR223926:0:Tyes10112112
VVUL196600:1:Tyes12110110
VVUL216895:0:Tno12110110
YENT393305:1:Tyes1401914440174018110
YPES187410:5:Tno35753765037633764357513832351
YPES214092:3:Tno2374244223142440244123749510
YPES349746:2:Tno35243585035813582352412412467
YPES360102:3:Tyes3735407604074407537351910703
YPES377628:2:Tno36223696036943695362220712457
YPES386656:2:Tno1872234120652339234018724500
YPSE273123:2:Tno37133794037923793371324421431
YPSE349747:2:Tno38353905039033904383513422292



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