CANDIDATE ID: 68

CANDIDATE ID: 68

NUMBER OF GENES: 8
AVERAGE SCORE:    9.9958664e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    5.0000000e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7340 (yphD) (b2546)
   Products of gene:
     - YPHD-MONOMER (YphD)
     - ABC-60-CPLX (YphD/YphE/YphF ABC transporter)

- EG12517 (ytfQ) (b4227)
   Products of gene:
     - YTFQ-MONOMER (YtfQ)
     - ABC-46-CPLX (galactose ABC transporter)
       Reactions:
        ATP + beta-D-galactose[periplasmic space] + H2O  ->  ADP + phosphate + beta-D-galactose[cytosol]

- EG11958 (alsC) (b4086)
   Products of gene:
     - YJCV-MONOMER (AlsC)
     - ABC-42-CPLX (D-allose ABC transporter)
       Reactions:
        D-allose[periplasmic space] + ATP + H2O  ->  D-allose[cytosol] + ADP + phosphate

- EG10818 (rbsK) (b3752)
   Products of gene:
     - RIBOKIN-MONOMER (ribokinase)
     - CPLX0-7647 (ribokinase)
       Reactions:
        D-ribose + ATP  ->  D-ribose-5-phosphate + ADP + 2 H+
         In pathways
         RIBOKIN-PWY (ribose degradation)

- EG10817 (rbsD) (b3748)
   Products of gene:
     - EG10817-MONOMER (ribose pyranase)
     - CPLX0-7646 (ribose pyranase)
       Reactions:
        beta-D-ribofuranose  =  beta-D-ribopyranose
         In pathways
         RIBOKIN-PWY (ribose degradation)

- EG10816 (rbsC) (b3750)
   Products of gene:
     - RBSC-MONOMER (RbsC)
     - ABC-28-CPLX (ribose ABC transporter)
       Reactions:
        ATP + beta-D-ribopyranose[periplasmic space] + H2O  ->  ADP + phosphate + beta-D-ribopyranose[cytosol]

- EG10815 (rbsB) (b3751)
   Products of gene:
     - RBSB-MONOMER (RbsB)
     - ABC-28-CPLX (ribose ABC transporter)
       Reactions:
        ATP + beta-D-ribopyranose[periplasmic space] + H2O  ->  ADP + phosphate + beta-D-ribopyranose[cytosol]

- EG10814 (rbsA) (b3749)
   Products of gene:
     - RBSA-MONOMER (RbsA)
     - ABC-28-CPLX (ribose ABC transporter)
       Reactions:
        ATP + beta-D-ribopyranose[periplasmic space] + H2O  ->  ADP + phosphate + beta-D-ribopyranose[cytosol]



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ORGANISMS CONTAINING AT LEAST 7 GENES FROM THE GROUP:

Total number of orgs: 138
Effective number of orgs (counting one per cluster within 468 clusters): 86

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317588
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329538
YPES386656 ncbi Yersinia pestis Pestoides F8
YPES377628 ncbi Yersinia pestis Nepal5168
YPES360102 ncbi Yersinia pestis Antiqua8
YPES349746 ncbi Yersinia pestis Angola8
YPES214092 ncbi Yersinia pestis CO928
YPES187410 ncbi Yersinia pestis KIM 108
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80818
VVUL216895 ncbi Vibrio vulnificus CMCP68
VVUL196600 ncbi Vibrio vulnificus YJ0168
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106338
VFIS312309 ncbi Vibrio fischeri ES1148
VEIS391735 ncbi Verminephrobacter eiseniae EF01-27
VCHO345073 ncbi Vibrio cholerae O3958
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169618
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB48
TSP1755 Thermoanaerobacter sp.8
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332238
TPET390874 ncbi Thermotoga petrophila RKU-18
TMAR243274 ncbi Thermotoga maritima MSB88
TLET416591 ncbi Thermotoga lettingae TMO7
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT28
SSON300269 ncbi Shigella sonnei Ss0468
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153058
SPRO399741 ncbi Serratia proteamaculans 5688
SPEA398579 ncbi Shewanella pealeana ATCC 7003458
SMEL266834 ncbi Sinorhizobium meliloti 10217
SMED366394 ncbi Sinorhizobium medicae WSM4197
SHAL458817 ncbi Shewanella halifaxensis HAW-EB48
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14358
SFLE198214 ncbi Shigella flexneri 2a str. 3017
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23387
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4768
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B678
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT188
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty28
SCO ncbi Streptomyces coelicolor A3(2)8
SBOY300268 ncbi Shigella boydii Sb2278
SAVE227882 ncbi Streptomyces avermitilis MA-46808
SAGA211110 ncbi Streptococcus agalactiae NEM3168
SAGA208435 ncbi Streptococcus agalactiae 2603V/R8
SAGA205921 ncbi Streptococcus agalactiae A9098
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99418
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38417
RETL347834 ncbi Rhizobium etli CFN 427
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30007
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a8
PSP117 Pirellula sp.8
PPRO298386 ncbi Photobacterium profundum SS98
PMUL272843 ncbi Pasteurella multocida multocida Pm708
PMOB403833 ncbi Petrotoga mobilis SJ957
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO18
PING357804 ncbi Psychromonas ingrahamii 378
PFLU220664 ncbi Pseudomonas fluorescens Pf-57
PFLU216595 ncbi Pseudomonas fluorescens SBW257
PACN267747 ncbi Propionibacterium acnes KPA1712027
OIHE221109 ncbi Oceanobacillus iheyensis HTE8318
OANT439375 ncbi Ochrobactrum anthropi ATCC 491887
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E7
MLOT266835 ncbi Mesorhizobium loti MAFF3030997
LLAC272623 ncbi Lactococcus lactis lactis Il14038
LCAS321967 ncbi Lactobacillus casei ATCC 3348
LACI272621 ncbi Lactobacillus acidophilus NCFM7
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785788
HSOM228400 ncbi Haemophilus somnus 23368
HSOM205914 ncbi Haemophilus somnus 129PT7
HMOD498761 ncbi Heliobacterium modesticaldum Ice17
HINF71421 ncbi Haemophilus influenzae Rd KW208
HINF374930 ncbi Haemophilus influenzae PittEE8
HINF281310 ncbi Haemophilus influenzae 86-028NP8
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-28
GKAU235909 ncbi Geobacillus kaustophilus HTA4268
ESP42895 Enterobacter sp.8
EFER585054 ncbi Escherichia fergusonii ATCC 354698
ECOO157 ncbi Escherichia coli O157:H7 EDL9338
ECOL83334 Escherichia coli O157:H78
ECOL585397 ncbi Escherichia coli ED1a8
ECOL585057 ncbi Escherichia coli IAI398
ECOL585056 ncbi Escherichia coli UMN0268
ECOL585055 ncbi Escherichia coli 559898
ECOL585035 ncbi Escherichia coli S888
ECOL585034 ncbi Escherichia coli IAI18
ECOL481805 ncbi Escherichia coli ATCC 87398
ECOL469008 ncbi Escherichia coli BL21(DE3)7
ECOL439855 ncbi Escherichia coli SMS-3-58
ECOL413997 ncbi Escherichia coli B str. REL6068
ECOL409438 ncbi Escherichia coli SE118
ECOL405955 ncbi Escherichia coli APEC O18
ECOL364106 ncbi Escherichia coli UTI898
ECOL362663 ncbi Escherichia coli 5368
ECOL331111 ncbi Escherichia coli E24377A8
ECOL316407 ncbi Escherichia coli K-12 substr. W31108
ECOL199310 ncbi Escherichia coli CFT0738
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10438
DRED349161 ncbi Desulfotomaculum reducens MI-17
CVIO243365 ncbi Chromobacterium violaceum ATCC 124728
CTET212717 ncbi Clostridium tetani E888
CNOV386415 ncbi Clostridium novyi NT8
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130327
CDIF272563 ncbi Clostridium difficile 6307
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6577
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B8
BXEN266265 ncbi Burkholderia xenovorans LB4007
BWEI315730 ncbi Bacillus weihenstephanensis KBAB48
BVIE269482 ncbi Burkholderia vietnamiensis G47
BTHU412694 ncbi Bacillus thuringiensis Al Hakam8
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-278
BTHA271848 ncbi Burkholderia thailandensis E2647
BSUI470137 ncbi Brucella suis ATCC 234457
BSUI204722 ncbi Brucella suis 13307
BSUB ncbi Bacillus subtilis subtilis 1688
BSP36773 Burkholderia sp.7
BPUM315750 ncbi Bacillus pumilus SAFR-0328
BMEL359391 ncbi Brucella melitensis biovar Abortus 23087
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M7
BLIC279010 ncbi Bacillus licheniformis ATCC 145808
BHAL272558 ncbi Bacillus halodurans C-1258
BCLA66692 ncbi Bacillus clausii KSM-K168
BCER572264 ncbi Bacillus cereus 03BB1028
BCER405917 Bacillus cereus W8
BCER315749 ncbi Bacillus cytotoxicus NVH 391-988
BCER288681 ncbi Bacillus cereus E33L8
BCEN331272 ncbi Burkholderia cenocepacia HI24247
BCEN331271 ncbi Burkholderia cenocepacia AU 10547
BCAN483179 ncbi Brucella canis ATCC 233657
BANT592021 ncbi Bacillus anthracis A02488
BANT568206 ncbi Bacillus anthracis CDC 6848
BANT261594 ncbi Bacillus anthracis Ames Ancestor8
BANT260799 ncbi Bacillus anthracis Sterne8
BAMY326423 ncbi Bacillus amyloliquefaciens FZB428
BAMB398577 ncbi Burkholderia ambifaria MC40-67
BAMB339670 ncbi Burkholderia ambifaria AMMD7
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9417
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4498
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL038
APLE416269 ncbi Actinobacillus pleuropneumoniae L208
AHYD196024 Aeromonas hydrophila dhakensis8


Names of the homologs of the genes in the group in each of these orgs
  G7340   EG12517   EG11958   EG10818   EG10817   EG10816   EG10815   EG10814   
YPSE349747 YPSIP31758_4029YPSIP31758_0147YPSIP31758_4029YPSIP31758_0008YPSIP31758_0007YPSIP31758_1509YPSIP31758_1507YPSIP31758_2466
YPSE273123 YPTB3806YPTB0127YPTB3806YPTB0008YPTB0007YPTB2535YPTB2537YPTB1523
YPES386656 YPDSF_3327YPDSF_3520YPDSF_3327YPDSF_0228YPDSF_3898YPDSF_1910YPDSF_1913YPDSF_1469
YPES377628 YPN_3612YPN_0059YPN_3612YPN_0008YPN_0007YPN_2093YPN_2095YPN_2471
YPES360102 YPA_3791YPA_0114YPA_3791YPA_0011YPA_0010YPA_1994YPA_1996YPA_0803
YPES349746 YPANGOLA_A4097YPANGOLA_A0475YPANGOLA_A4097YPANGOLA_A0008YPANGOLA_A0007YPANGOLA_A1759YPANGOLA_A1761YPANGOLA_A3018
YPES214092 YPO3963YPO3908YPO3963YPO0008YPO0007YPO2499YPO2501YPO1508
YPES187410 Y3866Y0328Y3866Y0008Y0007Y1689Y1687Y2661
YENT393305 YE0010YE0141YE0010YE0012YE0008YE0010YE0011YE0009
VVUL216895 VV2_0063VV2_0064VV2_0063VV2_0065VV2_0061VV2_0063VV2_0064VV2_0062
VVUL196600 VVA0570VVA0571VVA0570VVA0572VVA0568VVA0570VVA0571VVA0569
VPAR223926 VPA1085VPA1084VPA1085VPA1083VPA1087VPA1085VPA1084VPA1086
VFIS312309 VF1446VF1447VF1446VF1448VF1444VF1446VF1447VF1445
VEIS391735 VEIS_3417VEIS_2026VEIS_2045VEIS_2130VEIS_2045VEIS_2682VEIS_1088
VCHO345073 VC0395_0009VC0395_0008VC0395_0009VC0395_0007VC0395_0011VC0395_0009VC0395_0008VC0395_0010
VCHO VCA0129VCA0130VCA0129VCA0131VCA0127VCA0129VCA0130VCA0128
TTEN273068 TTE0205TTE0206TTE0764TTE0202TTE0203TTE0205TTE0206TTE0204
TSP1755 TETH514_0158TETH514_0166TETH514_0165TETH514_0162TETH514_0163TETH514_0165TETH514_0166TETH514_0164
TPSE340099 TETH39_2039TETH39_2038TETH39_2039TETH39_2042TETH39_2041TETH39_2039TETH39_2038TETH39_2040
TPET390874 TPET_0812TPET_1794TPET_1793TPET_1789TPET_1791TPET_1793TPET_1794TPET_0809
TMAR243274 TM_0955TM_0958TM_0955TM_0960TM_0959TM_0955TM_0958TM_0956
TLET416591 TLET_0389TLET_0185TLET_1905TLET_0189TLET_1328TLET_1325TLET_1327
STYP99287 STM3883STM3884STM3883STM3885STM3881STM3883STM3884STM3882
SSON300269 SSO_2629SSO_4409SSO_3920SSO_3922SSO_3918SSO_3920SSO_4409SSO_3919
SSAP342451 SSP1393SSP1392SSP1393SSP0744SSP1395SSP1393SSP1392SSP1394
SPRO399741 SPRO_4227SPRO_4768SPRO_4899SPRO_4897SPRO_4901SPRO_4899SPRO_4898SPRO_4900
SPEA398579 SPEA_0516SPEA_0517SPEA_0516SPEA_0518SPEA_0514SPEA_0516SPEA_0517SPEA_0515
SMEL266834 SMB21375SMB21587SMC02772SMC01103SMB20352SMB21345SMC02325
SMED366394 SMED_4767SMED_4908SMED_5745SMED_0052SMED_3767SMED_4740SMED_0226
SHAL458817 SHAL_0580SHAL_0581SHAL_0580SHAL_0582SHAL_0578SHAL_0580SHAL_0581SHAL_0579
SHAE279808 SH0178SH0179SH0178SH0175SH0176SH0178SH0179SH0177
SFLE198214 AAN44091.1AAN45681.1AAN45272.1AAN45273.1AAN45269.1AAN45272.1AAN43755.1
SERY405948 SACE_5660SACE_5660SACE_1882SACE_1271SACE_5660SACE_5660SACE_5659
SENT454169 SEHA_C4216SEHA_C4217SEHA_C4216SEHA_C4218SEHA_C4214SEHA_C4216SEHA_C4217SEHA_C4215
SENT321314 SCH_3796SCH_3797SCH_3796SCH_3798SCH_3794SCH_3796SCH_3797SCH_3795
SENT220341 STY3895STY3894STY3895STY3892STY3897STY3895STY3894STY3896
SENT209261 T3636T3635T3636T3634T3638T3636T3635T3637
SCO SCO2747SCO2747SCO2747SCO2748SCO2749SCO2747SCO2747SCO2746
SBOY300268 SBO_2572SBO_4218SBO_3764SBO_3766SBO_3762SBO_3764SBO_4218SBO_3575
SAVE227882 SAV1827SAV971SAV5318SAV5317SAV5316SAV5318SAV5318SAV7416
SAGA211110 GBS0114GBS0113GBS0114GBS0117GBS0116GBS0114GBS0113GBS0115
SAGA208435 SAG_0115SAG_0114SAG_0115SAG_0118SAG_0117SAG_0115SAG_0114SAG_0116
SAGA205921 SAK_0167SAK_0166SAK_0167SAK_0170SAK_0169SAK_0167SAK_0166SAK_0168
RXYL266117 RXYL_1889RXYL_0948RXYL_3002RXYL_0949RXYL_0950RXYL_0947RXYL_0948RXYL_0946
RLEG216596 PRL90223RL2376RL1746RL2747RL1746RL2721RL4654
RETL347834 RHE_CH03189RHE_CH02085RHE_CH01211RHE_PC00098RHE_PF00034RHE_CH00612RHE_CH03989
PSYR223283 PSPTO_3490PSPTO_3488PSPTO_2371PSPTO_2372PSPTO_3488PSPTO_2399PSPTO_3489
PSYR205918 PSYR_2570PSYR_3265PSYR_2570PSYR_2155PSYR_2156PSYR_2570PSYR_2151PSYR_3264
PSP117 RB3497RB3493RB3497RB3499RB3491RB3497RB3493RB3496
PPRO298386 PBPRB1558PBPRB1559PBPRB1558PBPRB1560PBPRB1556PBPRB1558PBPRB1559PBPRB1557
PMUL272843 PM0154PM0153PM0154PM0152PM0156PM0154PM0153PM0155
PMOB403833 PMOB_1602PMOB_0923PMOB_1602PMOB_0924PMOB_0920PMOB_0922PMOB_0923
PLUM243265 PLU0057PLU0058PLU0057PLU0059PLU0055PLU0057PLU0058PLU0056
PING357804 PING_0342PING_0343PING_0342PING_0344PING_0340PING_0342PING_0343PING_0341
PFLU220664 PFL_2593PFL_2595PFL_2105PFL_2106PFL_2595PFL_2101PFL_2594
PFLU216595 PFLU2583PFLU3994PFLU4156PFLU4155PFLU3994PFLU3996PFLU2584
PACN267747 PPA0016PPA0017PPA0016PPA1211PPA0019PPA0016PPA0017
OIHE221109 OB2573OB2572OB2573OB2576OB2575OB2573OB2572OB2574
OANT439375 OANT_0290OANT_1418OANT_4066OANT_4447OANT_4066OANT_0292OANT_3347
MSUC221988 MS0199MS1612MS0199MS0283MS0199MS1612MS0062
MLOT266835 MLL1013MLL1012MLL2145MLR8492MLL7011MLL1012MLL3598
LLAC272623 L83296L82310L83296L86157L85737L83296L82310L84240
LCAS321967 LSEI_0309LSEI_0310LSEI_0309LSEI_0312LSEI_0307LSEI_0309LSEI_0310LSEI_0308
LACI272621 LBA1481LBA1482LBA0587LBA1484LBA1482LBA1481LBA1483
KPNE272620 GKPORF_B3497GKPORF_B3984GKPORF_B3497GKPORF_B3499GKPORF_B3495GKPORF_B3497GKPORF_B3498GKPORF_B3496
HSOM228400 HSM_0091HSM_0092HSM_0558HSM_0093HSM_0089HSM_0091HSM_0092HSM_0090
HSOM205914 HS_0584HS_1581HS_0584HS_0225HS_0223HS_0769HS_0767
HMOD498761 HM1_2420HM1_2419HM1_2416HM1_2417HM1_2419HM1_2420HM1_2418
HINF71421 HI_0503HI_0504HI_0503HI_0505HI_0501HI_0503HI_0504HI_0502
HINF374930 CGSHIEE_06515CGSHIEE_00470CGSHIEE_00475CGSHIEE_00465CGSHIEE_00485CGSHIEE_00475CGSHIEE_00470CGSHIEE_00480
HINF281310 NTHI0631NTHI0632NTHI0631NTHI0633NTHI0629NTHI0631NTHI0632NTHI0630
GTHE420246 GTNG_3171GTNG_3170GTNG_3171GTNG_3174GTNG_3173GTNG_3171GTNG_3170GTNG_3172
GKAU235909 GK3227GK3226GK3227GK3230GK3229GK3227GK3226GK3228
ESP42895 ENT638_4114ENT638_0412ENT638_0288ENT638_4112ENT638_4116ENT638_4114ENT638_4113ENT638_4115
EFER585054 EFER_4049EFER_4306EFER_4284EFER_4051EFER_4047EFER_4049EFER_4050EFER_4048
ECOO157 YPHDYTFQZ5690RBSKRBSDRBSCRBSBRBSA
ECOL83334 ECS3412ECS5205ECS5072ECS4694ECS4690ECS4692ECS4693ECS4691
ECOL585397 ECED1_2973ECED1_5084ECED1_4820ECED1_4442ECED1_4438ECED1_4440ECED1_4441ECED1_4439
ECOL585057 ECIAI39_2749ECIAI39_4698ECIAI39_4510ECIAI39_4357ECIAI39_4353ECIAI39_4355ECIAI39_4356ECIAI39_4354
ECOL585056 ECUMN_2866ECUMN_4761ECUMN_4280ECUMN_4282ECUMN_4278ECUMN_4280ECUMN_4281ECUMN_4279
ECOL585055 EC55989_2832EC55989_4786EC55989_4225EC55989_4227EC55989_4223EC55989_4225EC55989_4226EC55989_4224
ECOL585035 ECS88_2716ECS88_4818ECS88_4172ECS88_4174ECS88_4170ECS88_4172ECS88_4173ECS88_4171
ECOL585034 ECIAI1_2599ECIAI1_4460ECIAI1_3934ECIAI1_3936ECIAI1_3932ECIAI1_3934ECIAI1_3935ECIAI1_3933
ECOL481805 ECOLC_1131ECOLC_3783ECOLC_3940ECOLC_4242ECOLC_4246ECOLC_4244ECOLC_4243ECOLC_4245
ECOL469008 ECBD_1138ECBD_3806ECBD_3944ECBD_4278ECBD_4280ECBD_4279ECBD_4281
ECOL439855 ECSMS35_2699ECSMS35_4705ECSMS35_4552ECSMS35_4120ECSMS35_4116ECSMS35_4118ECSMS35_4119ECSMS35_4117
ECOL413997 ECB_02438ECB_04096ECB_03958ECB_03638ECB_03634ECB_03636ECB_03637ECB_03635
ECOL409438 ECSE_2833ECSE_4533ECSE_4384ECSE_4042ECSE_4038ECSE_4040ECSE_4041ECSE_4039
ECOL405955 APECO1_3985APECO1_2164APECO1_2364APECO1_2711APECO1_2715APECO1_2713APECO1_2712APECO1_2714
ECOL364106 UTI89_C2865UTI89_C4832UTI89_C4305UTI89_C4307UTI89_C4303UTI89_C4305UTI89_C4306UTI89_C4304
ECOL362663 ECP_2547ECP_4477ECP_3344ECP_3952ECP_3947ECP_3671ECP_3951ECP_3948
ECOL331111 ECE24377A_2831ECE24377A_4797ECE24377A_4266ECE24377A_4268ECE24377A_4264ECE24377A_4266ECE24377A_4267ECE24377A_4265
ECOL316407 ECK2543:JW2530:B2546ECK4223:JW4186:B4227ECK4079:JW4047:B4086ECK3746:JW3731:B3752ECK3742:JW5857:B3748ECK3744:JW3729:B3750ECK3745:JW3730:B3751ECK3743:JW3728:B3749
ECOL199310 C3068C5325C5092C4680C4676C4678C4679C4677
ECAR218491 ECA0012ECA4236ECA1461ECA0014ECA0010ECA0012ECA0013ECA0011
DRED349161 DRED_2522DRED_2523DRED_2526DRED_2525DRED_2523DRED_2522DRED_2524
CVIO243365 CV_3017CV_3016CV_3017CV_3020CV_3019CV_3017CV_3016CV_3018
CTET212717 CTC_00906CTC_02347CTC_02349CTC_00909CTC_02351CTC_02349CTC_02347CTC_02350
CNOV386415 NT01CX_0163NT01CX_0162NT01CX_0163NT01CX_0166NT01CX_0165NT01CX_0163NT01CX_0162NT01CX_0164
CGLU196627 CG1412CG1413CG1412CG1546CG1414CG1412CG1413
CDIF272563 CD1588CD1589CD1588CD0299CD0302CD0300CD0301
CBOT515621 CLJ_B1313CLJ_B1315CLJ_B1313CLJ_B1671CLJ_B1313CLJ_B1315CLJ_B1312
CBOT508765 CLL_A1530CLL_A1531CLL_A1530CLL_A1527CLL_A1528CLL_A1530CLL_A1531CLL_A1529
BXEN266265 BXE_B1397BXE_B0573BXE_B1397BXE_B0576BXE_C1349BXE_B0894BXE_C1350
BWEI315730 BCERKBAB4_0582BCERKBAB4_0583BCERKBAB4_0582BCERKBAB4_0579BCERKBAB4_0580BCERKBAB4_0582BCERKBAB4_0583BCERKBAB4_0581
BVIE269482 BCEP1808_3838BCEP1808_6552BCEP1808_1507BCEP1808_1423BCEP1808_3381BCEP1808_1558BCEP1808_1389
BTHU412694 BALH_0611BALH_0612BALH_0611BALH_0607BALH_0608BALH_0611BALH_0612BALH_0609
BTHU281309 BT9727_0579BT9727_0580BT9727_0579BT9727_0576BT9727_0577BT9727_0579BT9727_0580BT9727_0578
BTHA271848 BTH_I2433BTH_I2342BTH_I2433BTH_I2471BTH_I2433BTH_I2435BTH_II0211
BSUI470137 BSUIS_A1690BSUIS_A1689BSUIS_A1690BSUIS_B0007BSUIS_A1690BSUIS_B0850BSUIS_A1691
BSUI204722 BR_1631BR_1630BR_1631BR_A0005BR_1631BR_A0858BR_1632
BSUB BSU35950BSU35960BSU35950BSU35920BSU35930BSU35950BSU35960BSU35940
BSP36773 BCEP18194_B0047BCEP18194_B2371BCEP18194_B0886BCEP18194_C7623BCEP18194_B0886BCEP18194_B0884BCEP18194_A4569
BPUM315750 BPUM_3267BPUM_3268BPUM_3267BPUM_3264BPUM_3265BPUM_3267BPUM_3268BPUM_3266
BMEL359391 BAB1_1649BAB1_1648BAB1_1649BAB2_0004BAB1_1649BAB2_0377BAB2_1110
BMEL224914 BMEI0392BMEI0393BMEI0392BMEII0089BMEI0392BMEII0435BMEII0145
BLIC279010 BL02442BL02443BL02442BL02439BL02440BL02442BL02443BL02441
BHAL272558 BH3731BH3732BH3731BH3728BH3729BH3731BH3732BH3730
BCLA66692 ABC3545ABC3544ABC3545ABC3548ABC3547ABC3545ABC3544ABC3546
BCER572264 BCA_0706BCA_0707BCA_0706BCA_0703BCA_0704BCA_0706BCA_0707BCA_0705
BCER405917 BCE_0736BCE_0737BCE_0736BCE_0733BCE_0734BCE_0736BCE_0737BCE_0735
BCER315749 BCER98_0563BCER98_0564BCER98_0563BCER98_0560BCER98_0561BCER98_0563BCER98_0564BCER98_0562
BCER288681 BCE33L0578BCE33L0579BCE33L0578BCE33L0575BCE33L0576BCE33L0578BCE33L0579BCE33L0577
BCEN331272 BCEN2424_5639BCEN2424_5992BCEN2424_4818BCEN2424_6126BCEN2424_4818BCEN2424_4820BCEN2424_1425
BCEN331271 BCEN_5220BCEN_5627BCEN_3549BCEN_5761BCEN_3549BCEN_3547BCEN_0943
BCAN483179 BCAN_A1668BCAN_A1667BCAN_A1668BCAN_B0007BCAN_A1668BCAN_B0875BCAN_A1669
BANT592021 BAA_0752BAA_0753BAA_0752BAA_0749BAA_0750BAA_0752BAA_0753BAA_0751
BANT568206 BAMEG_3918BAMEG_3917BAMEG_3918BAMEG_3921BAMEG_3920BAMEG_3918BAMEG_3917BAMEG_3919
BANT261594 GBAA0668GBAA0669GBAA0668GBAA0665GBAA0666GBAA0668GBAA0669GBAA0667
BANT260799 BAS0635BAS0636BAS0635BAS0632BAS0633BAS0635BAS0636BAS0634
BAMY326423 RBAM_033120RBAM_033130RBAM_033120RBAM_033090RBAM_033100RBAM_033120RBAM_033130RBAM_033110
BAMB398577 BAMMC406_1253BAMMC406_5924BAMMC406_4722BAMMC406_1383BAMMC406_4722BAMMC406_4724BAMMC406_1344
BAMB339670 BAMB_6336BAMB_6193BAMB_4199BAMB_1343BAMB_4199BAMB_4201BAMB_4447
BABO262698 BRUAB1_1619BRUAB1_1618BRUAB1_1619BRUAB2_0005BRUAB1_1619BRUAB2_0373BRUAB2_1088
ASAL382245 ASA_1969ASA_2140ASA_1969ASA_1967ASA_1971ASA_1969ASA_1968ASA_2395
APLE434271 APJL_1702APJL_1703APJL_1702APJL_1704APJL_1700APJL_1702APJL_1703APJL_1701
APLE416269 APL_1671APL_1672APL_1671APL_1673APL_1669APL_1671APL_1672APL_1670
AHYD196024 AHA_2311AHA_2312AHA_2311AHA_2313AHA_2309AHA_2311AHA_2312AHA_2310


Organism features enriched in list (features available for 131 out of the 138 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Pairs 0.002829036112
Disease:Anthrax 0.002459344
Disease:Brucellosis 0.000539455
Disease:Bubonic_plague 0.000117666
Disease:Gastroenteritis 0.00003501013
Endospores:No 0.000886933211
Endospores:Yes 2.829e-72853
GC_Content_Range4:0-40 0.000673733213
GC_Content_Range4:40-60 1.450e-878224
GC_Content_Range4:60-100 0.001166620145
GC_Content_Range7:50-60 2.186e-643107
GC_Content_Range7:60-70 0.000247116134
Genome_Size_Range5:0-2 4.359e-136155
Genome_Size_Range5:4-6 5.509e-969184
Genome_Size_Range5:6-10 0.00071972047
Genome_Size_Range9:1-2 1.074e-96128
Genome_Size_Range9:4-5 0.00060443496
Genome_Size_Range9:5-6 0.00003363588
Genome_Size_Range9:6-8 0.00704261538
Gram_Stain:Gram_Neg 0.004000187333
Habitat:Aquatic 0.00132941091
Habitat:Multiple 0.000543255178
Motility:No 0.000010916151
Motility:Yes 0.000029280267
Oxygen_Req:Aerobic 0.000574127185
Oxygen_Req:Facultative 8.258e-1380201
Pathogenic_in:Human 8.049e-669213
Pathogenic_in:No 0.000412035226
Shape:Coccus 0.0008716882
Shape:Rod 1.038e-11110347



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 378
Effective number of orgs (counting one per cluster within 468 clusters): 304

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM40
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A1
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110181
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103311
XFAS405440 ncbi Xylella fastidiosa M121
XFAS183190 ncbi Xylella fastidiosa Temecula11
XFAS160492 ncbi Xylella fastidiosa 9a5c1
XCAM487884 Xanthomonas campestris pv. paulliniae1
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-101
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80041
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339131
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3061
XAUT78245 ncbi Xanthobacter autotrophicus Py21
WSUC273121 ncbi Wolinella succinogenes DSM 17400
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTUR377629 ncbi Teredinibacter turnerae T79010
TTHE300852 ncbi Thermus thermophilus HB80
TTHE262724 ncbi Thermus thermophilus HB270
TPEN368408 ncbi Thermofilum pendens Hrk 51
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TFUS269800 ncbi Thermobifida fusca YX1
TERY203124 ncbi Trichodesmium erythraeum IMS1011
TELO197221 ncbi Thermosynechococcus elongatus BP-10
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12510
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252590
TDEN243275 ncbi Treponema denticola ATCC 354050
TCRU317025 ncbi Thiomicrospira crunogena XCL-20
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen0
STRO369723 ncbi Salinispora tropica CNB-4401
STOK273063 ncbi Sulfolobus tokodaii 71
STHE322159 ncbi Streptococcus thermophilus LMD-90
STHE299768 ncbi Streptococcus thermophilus CNRZ10660
STHE264199 ncbi Streptococcus thermophilus LMG 183110
SSUI391296 ncbi Streptococcus suis 98HAH330
SSUI391295 ncbi Streptococcus suis 05ZYH330
SSP84588 ncbi Synechococcus sp. WH 81020
SSP64471 ncbi Synechococcus sp. CC93110
SSP387093 ncbi Sulfurovum sp. NBC37-10
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)1
SSP321327 ncbi Synechococcus sp. JA-3-3Ab1
SSP1148 ncbi Synechocystis sp. PCC 68030
SSP1131 Synechococcus sp. CC96050
SSOL273057 ncbi Sulfolobus solfataricus P21
SSED425104 ncbi Shewanella sediminis HAW-EB31
SRUB309807 ncbi Salinibacter ruber DSM 138550
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370552 ncbi Streptococcus pyogenes MGAS102700
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103940
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SPNE488221 ncbi Streptococcus pneumoniae 705850
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-60
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-140
SPNE171101 ncbi Streptococcus pneumoniae R60
SPNE170187 ncbi Streptococcus pneumoniae G540
SPNE1313 Streptococcus pneumoniae0
SONE211586 ncbi Shewanella oneidensis MR-11
SMUT210007 ncbi Streptococcus mutans UA1590
SMAR399550 ncbi Staphylothermus marinus F10
SLOI323850 ncbi Shewanella loihica PV-41
SLAC55218 Ruegeria lacuscaerulensis1
SGOR29390 Streptococcus gordonii Challis0
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB0
SELO269084 ncbi Synechococcus elongatus PCC 63010
SDEN318161 ncbi Shewanella denitrificans OS2171
SDEG203122 ncbi Saccharophagus degradans 2-401
SBAL402882 ncbi Shewanella baltica OS1851
SBAL399599 ncbi Shewanella baltica OS1951
SARE391037 ncbi Salinispora arenicola CNS-2051
SALA317655 ncbi Sphingopyxis alaskensis RB22560
SACI56780 ncbi Syntrophus aciditrophicus SB0
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6391
RTYP257363 ncbi Rickettsia typhi Wilmington0
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RPOM246200 ncbi Ruegeria pomeroyi DSS-31
RPAL316058 ncbi Rhodopseudomonas palustris HaA20
RPAL316057 ncbi Rhodopseudomonas palustris BisB50
RPAL316056 ncbi Rhodopseudomonas palustris BisB180
RPAL316055 ncbi Rhodopseudomonas palustris BisA530
RPAL258594 ncbi Rhodopseudomonas palustris CGA0090
RMET266264 ncbi Ralstonia metallidurans CH340
RMAS416276 ncbi Rickettsia massiliae MTU50
RFEL315456 ncbi Rickettsia felis URRWXCal20
RCON272944 ncbi Rickettsia conorii Malish 70
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RALB246199 Ruminococcus albus 80
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97900
PTHE370438 ncbi Pelotomaculum thermopropionicum SI0
PSTU379731 ncbi Pseudomonas stutzeri A15010
PSP56811 Psychrobacter sp.0
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-10
PRUM264731 ncbi Prevotella ruminicola 231
PMEN399739 ncbi Pseudomonas mendocina ymp0
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74547 ncbi Prochlorococcus marinus MIT 93130
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR59920 ncbi Prochlorococcus marinus NATL2A0
PMAR167555 ncbi Prochlorococcus marinus NATL1A0
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13750
PMAR146891 ncbi Prochlorococcus marinus AS96010
PLUT319225 ncbi Chlorobium luteolum DSM 2730
PISL384616 ncbi Pyrobaculum islandicum DSM 41841
PINT246198 Prevotella intermedia 171
PHOR70601 ncbi Pyrococcus horikoshii OT30
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1250
PGIN242619 ncbi Porphyromonas gingivalis W830
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PCRY335284 ncbi Psychrobacter cryohalolentis K50
PCAR338963 ncbi Pelobacter carbinolicus DSM 23800
PATL342610 ncbi Pseudoalteromonas atlantica T6c1
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135141
PARC259536 ncbi Psychrobacter arcticus 273-40
PAER178306 ncbi Pyrobaculum aerophilum IM21
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
OCAR504832 ncbi Oligotropha carboxidovorans OM50
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2550
NSP387092 ncbi Nitratiruptor sp. SB155-20
NSP103690 ncbi Nostoc sp. PCC 71201
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
NOCE323261 ncbi Nitrosococcus oceani ATCC 197070
NMUL323848 ncbi Nitrosospira multiformis ATCC 251960
NMEN374833 ncbi Neisseria meningitidis 0534420
NMEN272831 ncbi Neisseria meningitidis FAM180
NMEN122587 ncbi Neisseria meningitidis Z24910
NMEN122586 ncbi Neisseria meningitidis MC580
NHAM323097 ncbi Nitrobacter hamburgensis X140
NGON242231 ncbi Neisseria gonorrhoeae FA 10900
NFAR247156 ncbi Nocardia farcinica IFM 101521
NEUT335283 ncbi Nitrosomonas eutropha C910
NEUR228410 ncbi Nitrosomonas europaea ATCC 197180
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124440
MXAN246197 ncbi Myxococcus xanthus DK 16220
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-11
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra1
MTUB336982 ncbi Mycobacterium tuberculosis F111
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MTBRV ncbi Mycobacterium tuberculosis H37Rv1
MTBCDC ncbi Mycobacterium tuberculosis CDC15511
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSP409 Methylobacterium sp.1
MSED399549 ncbi Metallosphaera sedula DSM 53481
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP1
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPET420662 ncbi Methylibium petroleiphilum PM10
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR394221 ncbi Maricaulis maris MCS100
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MMAG342108 ncbi Magnetospirillum magneticum AMB-10
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK1
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L11
MFLA265072 ncbi Methylobacillus flagellatus KT1
MEXT419610 ncbi Methylobacterium extorquens PA10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MCAP243233 ncbi Methylococcus capsulatus Bath0
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P21
MBOV233413 ncbi Mycobacterium bovis AF2122/971
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MAVI243243 ncbi Mycobacterium avium 1041
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAQU351348 ncbi Marinobacter aquaeolei VT80
MAER449447 ncbi Microcystis aeruginosa NIES-8430
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
MABS561007 ncbi Mycobacterium abscessus ATCC 199771
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53340
LSPH444177 ncbi Lysinibacillus sphaericus C3-411
LPNE400673 ncbi Legionella pneumophila Corby0
LPNE297246 ncbi Legionella pneumophila Paris0
LPNE297245 ncbi Legionella pneumophila Lens0
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 10
LMON265669 ncbi Listeria monocytogenes 4b F23650
LMON169963 ncbi Listeria monocytogenes EGD-e0
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82931
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-000
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1300
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566010
LINN272626 ncbi Listeria innocua Clip112620
LHEL405566 ncbi Lactobacillus helveticus DPC 45711
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118421
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3651
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1970
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5500
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)0
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)0
JSP375286 ncbi Janthinobacterium sp. Marseille0
ILOI283942 ncbi Idiomarina loihiensis L2TR0
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSAL478009 ncbi Halobacterium salinarum R10
HPYL85963 ncbi Helicobacter pylori J990
HPYL357544 ncbi Helicobacter pylori HPAG10
HPY ncbi Helicobacter pylori 266950
HNEP81032 Hyphomonas neptunium1
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMAR272569 ncbi Haloarcula marismortui ATCC 430490
HHEP235279 ncbi Helicobacter hepaticus ATCC 514490
HHAL349124 ncbi Halorhodospira halophila SL10
HDUC233412 ncbi Haemophilus ducreyi 35000HP0
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HARS204773 ncbi Herminiimonas arsenicoxydans0
HACI382638 ncbi Helicobacter acinonychis Sheeba0
GURA351605 ncbi Geobacter uraniireducens Rf40
GSUL243231 ncbi Geobacter sulfurreducens PCA0
GOXY290633 ncbi Gluconobacter oxydans 621H1
GMET269799 ncbi Geobacter metallireducens GS-150
GFOR411154 ncbi Gramella forsetii KT08031
GBET391165 ncbi Granulibacter bethesdensis CGDNIH11
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-000
FTUL418136 ncbi Francisella tularensis tularensis WY96-34180
FTUL401614 ncbi Francisella novicida U1121
FTUL393115 ncbi Francisella tularensis tularensis FSC1980
FTUL393011 ncbi Francisella tularensis holarctica OSU180
FTUL351581 Francisella tularensis holarctica FSC2000
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S850
FSP1855 Frankia sp. EAN1pec1
FSP106370 ncbi Frankia sp. CcI30
FRANT ncbi Francisella tularensis tularensis SCHU S40
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250171
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255861
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B10
FMAG334413 ncbi Finegoldia magna ATCC 293281
FJOH376686 ncbi Flavobacterium johnsoniae UW1010
FALN326424 ncbi Frankia alni ACN14a1
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ELIT314225 ncbi Erythrobacter litoralis HTCC25940
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough0
DSP255470 ncbi Dehalococcoides sp. CBDB10
DSP216389 ncbi Dehalococcoides sp. BAV10
DRAD243230 ncbi Deinococcus radiodurans R11
DPSY177439 ncbi Desulfotalea psychrophila LSv541
DOLE96561 ncbi Desulfococcus oleovorans Hxd30
DNOD246195 ncbi Dichelobacter nodosus VCS1703A0
DHAF138119 ncbi Desulfitobacterium hafniense Y510
DETH243164 ncbi Dehalococcoides ethenogenes 1950
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G200
DARO159087 ncbi Dechloromonas aromatica RCB0
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA0
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTEP194439 ncbi Chlorobium tepidum TLS0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CSP78 Caulobacter sp.1
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)0
CPSY167879 ncbi Colwellia psychrerythraea 34H0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE250
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10620
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMIC31964 ncbi Clavibacter michiganensis sepedonicus1
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF81
CKLU431943 ncbi Clostridium kluyveri DSM 5550
CJEJ407148 ncbi Campylobacter jejuni jejuni 811160
CJEJ360109 ncbi Campylobacter jejuni doylei 269.970
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1760
CJEJ195099 ncbi Campylobacter jejuni RM12210
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111680
CJEI306537 ncbi Corynebacterium jeikeium K4111
CJAP155077 Cellvibrio japonicus1
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29010
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334060
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3810
CFET360106 ncbi Campylobacter fetus fetus 82-400
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CEFF196164 ncbi Corynebacterium efficiens YS-3141
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131291
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C0
CCUR360105 ncbi Campylobacter curvus 525.920
CCON360104 ncbi Campylobacter concisus 138260
CCHL340177 ncbi Chlorobium chlorochromatii CaD30
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1110
CBUR360115 ncbi Coxiella burnetii RSA 3310
CBUR227377 ncbi Coxiella burnetii RSA 4930
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto1
CBOT498213 ncbi Clostridium botulinum B1 str. Okra1
CBOT441772 ncbi Clostridium botulinum F str. Langeland1
CBOT441771 ncbi Clostridium botulinum A str. Hall1
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193971
CBOT36826 Clostridium botulinum A1
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN0
CBLO203907 ncbi Candidatus Blochmannia floridanus0
CABO218497 ncbi Chlamydophila abortus S26/30
BTUR314724 ncbi Borrelia turicatae 91E1350
BTRI382640 ncbi Bartonella tribocorum CIP 1054760
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)0
BQUI283165 ncbi Bartonella quintana Toulouse0
BPET94624 Bordetella petrii0
BPER257313 ncbi Bordetella pertussis Tohama I0
BPAR257311 ncbi Bordetella parapertussis 128220
BHER314723 ncbi Borrelia hermsii DAH0
BHEN283166 ncbi Bartonella henselae Houston-10
BGAR290434 ncbi Borrelia garinii PBi0
BFRA295405 ncbi Bacteroides fragilis YCH461
BFRA272559 ncbi Bacteroides fragilis NCTC 93431
BCIC186490 Candidatus Baumannia cicadellinicola0
BBUR224326 ncbi Borrelia burgdorferi B310
BBRO257310 ncbi Bordetella bronchiseptica RB500
BBAC360095 ncbi Bartonella bacilliformis KC5830
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1000
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)0
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP76114 ncbi Aromatoleum aromaticum EbN10
ASP62977 ncbi Acinetobacter sp. ADP11
ASP62928 ncbi Azoarcus sp. BH720
ASP232721 ncbi Acidovorax sp. JS420
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K10
AORE350688 ncbi Alkaliphilus oremlandii OhILAs0
ANAE240017 Actinomyces oris MG11
AMAR329726 ncbi Acaryochloris marina MBIC110170
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A1
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232700
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-10
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C0
ABUT367737 ncbi Arcobacter butzleri RM40180
ABOR393595 ncbi Alcanivorax borkumensis SK20
ABAU360910 ncbi Bordetella avium 197N0
AAEO224324 ncbi Aquifex aeolicus VF50


Names of the homologs of the genes in the group in each of these orgs
  G7340   EG12517   EG11958   EG10818   EG10817   EG10816   EG10815   EG10814   
ZMOB264203
XORY360094 XOOORF_1122
XORY342109 XOO3565
XORY291331 XOO3785
XFAS405440 XFASM12_1863
XFAS183190 PD_1698
XFAS160492 XF0366
XCAM487884 XCC-B100_3589
XCAM316273 XCAORF_0942
XCAM314565 XC_3468
XCAM190485 XCC0764
XAXO190486 XAC0818
XAUT78245 XAUT_2413
WSUC273121
WPIP955
WPIP80849
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496
TWHI203267
TVOL273116
TTUR377629
TTHE300852
TTHE262724
TPEN368408 TPEN_1649
TPAL243276
TKOD69014
TFUS269800 TFU_0259
TERY203124 TERY_0865
TELO197221
TDEN326298
TDEN292415
TDEN243275
TCRU317025
TACI273075
SWOL335541
STRO369723 STROP_1202
STOK273063 ST2328
STHE322159
STHE299768
STHE264199
SSUI391296
SSUI391295
SSP84588
SSP64471
SSP387093
SSP321332 CYB_1353
SSP321327 CYA_2257
SSP1148
SSP1131
SSOL273057 SSO0004
SSED425104 SSED_1048
SRUB309807
SPYO370554
SPYO370553
SPYO370552
SPYO370551
SPYO319701
SPYO293653
SPYO286636
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SPNE488221
SPNE487214
SPNE487213
SPNE171101
SPNE170187
SPNE1313
SONE211586 SO_0810
SMUT210007
SMAR399550
SLOI323850 SHEW_0696
SLAC55218 SL1157_1099
SGOR29390
SFUM335543
SELO269084
SDEN318161 SDEN_0939
SDEG203122 SDE_0766
SBAL402882 SHEW185_3648
SBAL399599 SBAL195_3771
SARE391037 SARE_1094
SALA317655
SACI56780
SACI330779 SACI_0272
RTYP257363
RRIC452659
RRIC392021
RPRO272947
RPOM246200 SPO_0013
RPAL316058
RPAL316057
RPAL316056
RPAL316055
RPAL258594
RMET266264
RMAS416276
RFEL315456
RCON272944
RCAN293613
RBEL391896
RBEL336407
RALB246199
RAKA293614
PTOR263820
PTHE370438
PSTU379731
PSP56811
PSP312153
PRUM264731 GFRORF2271
PMEN399739
PMAR93060
PMAR74547
PMAR74546
PMAR59920
PMAR167555
PMAR167546
PMAR167542
PMAR167540
PMAR167539
PMAR146891
PLUT319225
PISL384616 PISL_1117
PINT246198 PIN_A0148
PHOR70601
PHAL326442
PGIN242619
PFUR186497
PCRY335284
PCAR338963
PATL342610 PATL_3505
PAST100379
PARS340102 PARS_0078
PARC259536
PAER178306 PAE0835
PABY272844
OTSU357244
OCAR504832
NWIN323098
NSP387092
NSP103690 ALL1784
NSEN222891
NPHA348780
NOCE323261
NMUL323848
NMEN374833
NMEN272831
NMEN122587
NMEN122586
NHAM323097
NGON242231
NFAR247156 NFA13700
NEUT335283
NEUR228410
NARO279238
MXAN246197
MVAN350058 MVAN_3935
MTUB419947 MRA_2462
MTUB336982 TBFG_12463
MTHE349307
MTHE187420
MTBRV RV2436
MTBCDC MT2511
MSYN262723
MSTA339860
MSP409 M446_3132
MSED399549 MSED_0185
MPUL272635 MYPU_6000
MPNE272634
MPET420662
MPEN272633
MMYC272632
MMOB267748
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR394221
MMAR368407
MMAR267377
MMAG342108
MLEP272631
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGIL350054 MFLV_2643
MGEN243273
MFLO265311 MFL642
MFLA265072 MFLA_2300
MEXT419610
MCAP340047
MCAP243233
MBUR259564
MBOV410289 BCG_2455
MBOV233413 MB2462
MBAR269797
MAVI243243 MAV_0347
MART243272
MAQU351348
MAER449447
MAEO419665
MACE188937
MABS561007 MAB_1617C
LWEL386043
LSPH444177 BSPH_3382
LPNE400673
LPNE297246
LPNE297245
LPNE272624
LMON265669
LMON169963
LMES203120 LEUM_0691
LINT363253
LINT267671
LINT189518
LINN272626
LHEL405566 LHV_0611
LDEL390333 LDB0529
LDEL321956 LBUL_0470
LBOR355277
LBOR355276
LBIF456481
LBIF355278
JSP375286
ILOI283942
IHOS453591
HWAL362976
HSP64091
HSAL478009
HPYL85963
HPYL357544
HPY
HNEP81032 HNE_0207
HMUK485914
HMAR272569
HHEP235279
HHAL349124
HDUC233412
HBUT415426
HARS204773
HACI382638
GURA351605
GSUL243231
GOXY290633 GOX2084
GMET269799
GFOR411154 GFO_0006
GBET391165 GBCGDNIH1_1810
FTUL458234
FTUL418136
FTUL401614 FTN_1767
FTUL393115
FTUL393011
FTUL351581
FSUC59374
FSP1855 FRANEAN1_7032
FSP106370
FRANT
FPHI484022 FPHI_0829
FNUC190304 FN1166
FNOD381764
FMAG334413 FMG_1548
FJOH376686
FALN326424 FRAAL3962
ERUM302409
ERUM254945
ELIT314225
ECHA205920
ECAN269484
DVUL882
DSP255470
DSP216389
DRAD243230 DR_A0055
DPSY177439 DP1974
DOLE96561
DNOD246195
DHAF138119
DETH243164
DDES207559
DARO159087
CVES412965
CTRA471473
CTRA471472
CTEP194439
CSUL444179
CSP78 CAUL_1363
CRUT413404
CPSY167879
CPRO264201
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPEL335992
CMUR243161
CMIC31964 CMS0201
CMET456442
CMAQ397948
CKOR374847 KCR_1208
CKLU431943
CJEJ407148
CJEJ360109
CJEJ354242
CJEJ195099
CJEJ192222
CJEI306537 JK2077
CJAP155077 CJA_3019
CHYD246194
CHUT269798
CHOM360107
CFET360106
CFEL264202
CEFF196164 CE1484
CDIP257309 DIP0655
CDES477974
CCUR360105
CCON360104
CCHL340177
CCAV227941
CBUR434922
CBUR360115
CBUR227377
CBOT536232 CLM_1805
CBOT498213 CLD_2988
CBOT441772 CLI_1646
CBOT441771 CLC_1595
CBOT441770 CLB_1584
CBOT36826 CBO1564
CBLO291272
CBLO203907
CABO218497
BTUR314724
BTRI382640
BSP107806
BQUI283165
BPET94624
BPER257313
BPAR257311
BHER314723
BHEN283166
BGAR290434
BFRA295405 BF3339
BFRA272559 BF3174
BCIC186490
BBUR224326
BBRO257310
BBAC360095
BBAC264462
BAPH372461
BAPH198804
BAFZ390236
AYEL322098
AURANTIMONAS
ASP76114
ASP62977 ACIAD2392
ASP62928
ASP232721
APHA212042
APER272557
AORE350688
ANAE240017 ANA_1770
AMAR329726
AMAR234826
ALAI441768 ACL_1374
AFUL224325
AFER243159
AEHR187272
ADEH290397
ABUT367737
ABOR393595
ABAU360910
AAEO224324


Organism features enriched in list (features available for 353 out of the 378 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Clusters 2.630e-6117
Arrangment:Pairs 7.747e-843112
Disease:Gastroenteritis 0.0053943313
Disease:Wide_range_of_infections 0.00376741111
Endospores:No 0.0011362144211
Endospores:Yes 2.082e-61653
GC_Content_Range4:0-40 0.0000169152213
GC_Content_Range4:60-100 0.003469675145
GC_Content_Range7:0-30 0.00120353847
GC_Content_Range7:30-40 0.0029636114166
GC_Content_Range7:50-60 0.000992951107
GC_Content_Range7:60-70 0.006636070134
Genome_Size_Range5:0-2 2.287e-25144155
Genome_Size_Range5:4-6 5.946e-1372184
Genome_Size_Range5:6-10 1.586e-9947
Genome_Size_Range9:0-1 8.696e-72727
Genome_Size_Range9:1-2 2.743e-18117128
Genome_Size_Range9:4-5 8.185e-63996
Genome_Size_Range9:5-6 1.253e-63388
Genome_Size_Range9:6-8 4.398e-8738
Gram_Stain:Gram_Pos 8.878e-766150
Habitat:Aquatic 0.00006837191
Habitat:Multiple 0.000026586178
Habitat:Specialized 0.00049594353
Habitat:Terrestrial 0.0002062931
Motility:Yes 0.0030474147267
Optimal_temp.:25-35 0.0000394114
Optimal_temp.:30-37 0.0007788418
Oxygen_Req:Aerobic 0.0098239123185
Oxygen_Req:Anaerobic 0.000226777102
Oxygen_Req:Facultative 1.149e-1282201
Oxygen_Req:Microaerophilic 0.00714341618
Pathogenic_in:Human 0.0034758115213
Shape:Irregular_coccus 0.00016911717
Shape:Rod 1.468e-11172347
Shape:Sphere 0.00077631819
Shape:Spiral 4.928e-73334
Temp._range:Mesophilic 0.0005927272473



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ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 14
Effective number of orgs (counting one per cluster within 468 clusters): 11

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
TPET390874 ncbi Thermotoga petrophila RKU-1 0.00043028348
TMAR243274 ncbi Thermotoga maritima MSB8 0.00046018418
SAGA211110 ncbi Streptococcus agalactiae NEM316 0.00058218668
SAGA208435 ncbi Streptococcus agalactiae 2603V/R 0.00059858698
SAGA205921 ncbi Streptococcus agalactiae A909 0.00060418708
LLAC272623 ncbi Lactococcus lactis lactis Il1403 0.00085169088
LCAS321967 ncbi Lactobacillus casei ATCC 334 0.00123489518
CTET212717 ncbi Clostridium tetani E88 0.001878210028
PSP117 Pirellula sp. 0.002973110618
CNOV386415 ncbi Clostridium novyi NT 0.003664410898
SHAE279808 ncbi Staphylococcus haemolyticus JCSC1435 0.004030511028
LACI272621 ncbi Lactobacillus acidophilus NCFM 0.00410526847
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 15305 0.004179711078
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 33223 0.007931611998


Names of the homologs of the genes in the group in each of these orgs
  G7340   EG12517   EG11958   EG10818   EG10817   EG10816   EG10815   EG10814   
TPET390874 TPET_0812TPET_1794TPET_1793TPET_1789TPET_1791TPET_1793TPET_1794TPET_0809
TMAR243274 TM_0955TM_0958TM_0955TM_0960TM_0959TM_0955TM_0958TM_0956
SAGA211110 GBS0114GBS0113GBS0114GBS0117GBS0116GBS0114GBS0113GBS0115
SAGA208435 SAG_0115SAG_0114SAG_0115SAG_0118SAG_0117SAG_0115SAG_0114SAG_0116
SAGA205921 SAK_0167SAK_0166SAK_0167SAK_0170SAK_0169SAK_0167SAK_0166SAK_0168
LLAC272623 L83296L82310L83296L86157L85737L83296L82310L84240
LCAS321967 LSEI_0309LSEI_0310LSEI_0309LSEI_0312LSEI_0307LSEI_0309LSEI_0310LSEI_0308
CTET212717 CTC_00906CTC_02347CTC_02349CTC_00909CTC_02351CTC_02349CTC_02347CTC_02350
PSP117 RB3497RB3493RB3497RB3499RB3491RB3497RB3493RB3496
CNOV386415 NT01CX_0163NT01CX_0162NT01CX_0163NT01CX_0166NT01CX_0165NT01CX_0163NT01CX_0162NT01CX_0164
SHAE279808 SH0178SH0179SH0178SH0175SH0176SH0178SH0179SH0177
LACI272621 LBA1481LBA1482LBA0587LBA1484LBA1482LBA1481LBA1483
SSAP342451 SSP1393SSP1392SSP1393SSP0744SSP1395SSP1393SSP1392SSP1394
TPSE340099 TETH39_2039TETH39_2038TETH39_2039TETH39_2042TETH39_2041TETH39_2039TETH39_2038TETH39_2040


Organism features enriched in list (features available for 13 out of the 14 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.0013106792
Disease:Septicemia 0.002655024
Disease:and_meningitis 0.000459822
GC_Content_Range4:0-40 0.002837410213
GC_Content_Range7:30-40 0.00979768166
Genome_Size_Range5:2-4 0.001450110197
Genome_Size_Range9:2-3 0.000015110120
Gram_Stain:Gram_Neg 0.00209382333
Gram_Stain:Gram_Pos 0.000011011150
Optimal_temp.:80 0.001353223
Shape:Coccus 0.0041834682



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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
RIBOKIN-PWY (ribose degradation)2791240.4835
GALACTITOLCAT-PWY (galactitol degradation)73560.4787
TREDEGLOW-PWY (trehalose degradation I (low osmolarity))121750.4709
GLUTDEG-PWY (glutamate degradation II)194980.4593
XYLCAT-PWY (xylose degradation I)2171030.4457
PWY-6196 (serine racemization)102650.4430
GLUTAMINDEG-PWY (glutamine degradation I)191950.4417
PWY-6374 (vibriobactin biosynthesis)77540.4339
PWY-5861 (superpathway of demethylmenaquinone-8 biosynthesis)50410.4257
GLUCUROCAT-PWY (β-D-glucuronide and D-glucuronate degradation)208980.4256
PWY0-1295 (pyrimidine ribonucleosides degradation I)2391040.4059



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG12517   EG11958   EG10818   EG10817   EG10816   EG10815   EG10814   
G73400.9995280.9996810.9993610.9994410.9996660.999590.999527
EG125170.9996180.9993590.9994570.9996140.9997240.999558
EG119580.9994270.9995430.9997910.9996860.999637
EG108180.9997150.9995510.9995970.999477
EG108170.9996120.9996190.999621
EG108160.9997490.999711
EG108150.999566
EG10814



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PAIRWISE BLAST SCORES:

  G7340   EG12517   EG11958   EG10818   EG10817   EG10816   EG10815   EG10814   
G73400.0f0----1.9e-33--
EG12517-0.0f0----8.6e-29-
EG11958--0.0f0--6.9e-43--
EG10818---0.0f0----
EG10817----0.0f0---
EG10816-----0.0f0--
EG10815-8.6e-29----0.0f0-
EG10814-------0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- RIBOKIN-PWY (ribose degradation) (degree of match pw to cand: 1.000, degree of match cand to pw: 0.250, average score: 1.000)
  Genes in pathway or complex:
   *in cand* 0.9996 0.9994 EG10818 (rbsK) RIBOKIN-MONOMER (ribokinase)
   *in cand* 0.9996 0.9994 EG10817 (rbsD) EG10817-MONOMER (ribose pyranase)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9996 0.9995 EG10814 (rbsA) RBSA-MONOMER (RbsA)
   *in cand* 0.9997 0.9996 EG10815 (rbsB) RBSB-MONOMER (RbsB)
   *in cand* 0.9997 0.9996 EG10816 (rbsC) RBSC-MONOMER (RbsC)
   *in cand* 0.9997 0.9994 EG11958 (alsC) YJCV-MONOMER (AlsC)
   *in cand* 0.9996 0.9994 EG12517 (ytfQ) YTFQ-MONOMER (YtfQ)
   *in cand* 0.9996 0.9994 G7340 (yphD) YPHD-MONOMER (YphD)

- ABC-28-CPLX (ribose ABC transporter) (degree of match pw to cand: 1.000, degree of match cand to pw: 0.375, average score: 1.000)
  Genes in pathway or complex:
   *in cand* 0.9997 0.9996 EG10815 (rbsB) RBSB-MONOMER (RbsB)
   *in cand* 0.9997 0.9996 EG10816 (rbsC) RBSC-MONOMER (RbsC)
   *in cand* 0.9996 0.9995 EG10814 (rbsA) RBSA-MONOMER (RbsA)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9996 0.9994 EG10817 (rbsD) EG10817-MONOMER (ribose pyranase)
   *in cand* 0.9996 0.9994 EG10818 (rbsK) RIBOKIN-MONOMER (ribokinase)
   *in cand* 0.9997 0.9994 EG11958 (alsC) YJCV-MONOMER (AlsC)
   *in cand* 0.9996 0.9994 EG12517 (ytfQ) YTFQ-MONOMER (YtfQ)
   *in cand* 0.9996 0.9994 G7340 (yphD) YPHD-MONOMER (YphD)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10814 EG10815 EG10816 EG10817 EG10818 (centered at EG10816)
G7340 (centered at G7340)
EG12517 (centered at EG12517)
EG11958 (centered at EG11958)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7340   EG12517   EG11958   EG10818   EG10817   EG10816   EG10815   EG10814   
163/623198/623194/623306/623152/623177/623193/623176/623
AAUR290340:2:Tyes-51503232-517515-
AAVE397945:0:Tyes-0-19071908-1903-
ABAC204669:0:Tyes--0----1
ACAU438753:0:Tyes-20---2-
ACEL351607:0:Tyes425--0----
ACRY349163:8:Tyes-171702384-560559-
AHYD196024:0:Tyes23240231
ALAI441768:0:Tyes---0----
AMET293826:0:Tyes0-129--129-2306
ANAE240017:0:Tyes---0----
APLE416269:0:Tyes23240231
APLE434271:0:Tno23240231
ASAL382245:5:Tyes216620321413
ASP1667:3:Tyes1767-17670-1767--
ASP62977:0:Tyes---0----
AVAR240292:3:Tyes1931-19310-193119291930
BABO262698:0:Tno---0--3481017
BABO262698:1:Tno101--1--
BAMB339670:1:Tno1430------
BAMB339670:2:Tno--0--02246
BAMB339670:3:Tno---0----
BAMB398577:1:Tno-0------
BAMB398577:2:Tno--0--02-
BAMB398577:3:Tno0--127---88
BAMY326423:0:Tyes34301342
BANT260799:0:Tno34301342
BANT261594:2:Tno34301342
BANT568206:2:Tyes10143102
BANT592021:2:Tno34301342
BCAN483179:0:Tno---0--820-
BCAN483179:1:Tno101--1-2
BCEN331271:0:Tno-0-133----
BCEN331271:1:Tno1657-2--20-
BCEN331271:2:Tno-------0
BCEN331272:1:Tyes-0-134----
BCEN331272:2:Tyes820-0--02-
BCEN331272:3:Tyes-------0
BCER226900:1:Tyes3-3013-2
BCER288681:0:Tno34301342
BCER315749:1:Tyes34301342
BCER405917:1:Tyes34301342
BCER572264:1:Tno34301342
BCLA66692:0:Tyes10143102
BFRA272559:1:Tyes-0------
BFRA295405:0:Tno-0------
BHAL272558:0:Tyes34301342
BJAP224911:0:Fyes020921568780-02092-
BLIC279010:0:Tyes34301342
BLON206672:0:Tyes-0-1380----
BMAL243160:1:Tno--0--021149
BMAL320388:0:Tno-0------
BMAL320388:1:Tno--1211--121112130
BMAL320389:0:Tyes-0------
BMAL320389:1:Tyes--2--202394
BMEL224914:0:Tno---0--35856
BMEL224914:1:Tno010--0--
BMEL359391:0:Tno---0--334999
BMEL359391:1:Tno101--1--
BOVI236:1:Tyes101--1-2
BPSE272560:0:Tyes-115-----0
BPSE272560:1:Tyes--039-02-
BPSE320372:0:Tno-156-----0
BPSE320372:1:Tno--460-4644-
BPSE320373:0:Tno-170-----0
BPSE320373:1:Tno--500-5048-
BPUM315750:0:Tyes34301342
BSP36773:0:Tyes---0----
BSP36773:1:Tyes02324840--840838-
BSP36773:2:Tyes-------0
BSP376:0:Tyes-3924041030-3943920
BSUB:0:Tyes34301342
BSUI204722:0:Tyes---0--812-
BSUI204722:1:Tyes101--1-2
BSUI470137:0:Tno---0--780-
BSUI470137:1:Tno101--1-2
BTHA271848:0:Tno-------0
BTHA271848:1:Tno91091129-9193-
BTHE226186:0:Tyes-0-1078----
BTHU281309:1:Tno34301342
BTHU412694:1:Tno34301342
BVIE269482:5:Tyes-0------
BVIE269482:6:Tyes452----0--
BVIE269482:7:Tyes--11734--1680
BWEI315730:4:Tyes34301342
BXEN266265:0:Tyes-----0-1
BXEN266265:1:Tyes08100807--493-
CACE272562:1:Tyes-0----0-
CAULO:0:Tyes20293-20-
CBEI290402:0:Tyes-385-0--385888
CBOT36826:1:Tno---0----
CBOT441770:0:Tyes---0----
CBOT441771:0:Tno---0----
CBOT441772:1:Tno---0----
CBOT498213:1:Tno---0----
CBOT508765:1:Tyes34301342
CBOT515621:2:Tyes131349-130
CBOT536232:0:Tno---0----
CDIF272563:1:Tyes1322132313220-312
CDIP257309:0:Tyes---0----
CEFF196164:0:Fyes---0----
CGLU196627:0:Tyes010116201-
CJAP155077:0:Tyes-0------
CJEI306537:0:Tyes---0----
CKOR374847:0:Tyes---0----
CMIC31964:2:Tyes---0----
CMIC443906:2:Tyes-0-530----
CNOV386415:0:Tyes10143102
CPER195102:1:Tyes--143102
CPER195103:0:Tno--0320-1
CPER289380:3:Tyes-0-43-02
CPHY357809:0:Tyes--0677---868
CSAL290398:0:Tyes0101519-01-
CSP501479:2:Fyes0-------
CSP501479:7:Fyes---0----
CSP78:2:Tyes---0----
CTET212717:0:Tyes01324132531327132513241326
CVIO243365:0:Tyes10143102
DGEO319795:0:Tyes279160---279-0
DGEO319795:1:Tyes---0----
DPSY177439:2:Tyes---0----
DRAD243230:2:Tyes---0----
DRED349161:0:Tyes-0143102
DSHI398580:5:Tyes--4590---460
ECAR218491:0:Tyes24294147840231
ECOL199310:0:Tno02222199315881584158615871585
ECOL316407:0:Tno016611518957961959958960
ECOL331111:6:Tno01885138713891385138713881386
ECOL362663:0:Tno0191980214031400112614021401
ECOL364106:1:Tno01948143014321428143014311429
ECOL405955:2:Tyes01848164312771273127512761274
ECOL409438:6:Tyes01756160312331229123112321230
ECOL413997:0:Tno01695155412111207120912101208
ECOL439855:4:Tno01916176713671363136513661364
ECOL469008:0:Tno0264027813136-313831373139
ECOL481805:0:Tno02649280631323136313431333135
ECOL585034:0:Tno01805130813101306130813091307
ECOL585035:0:Tno02015141214141410141214131411
ECOL585055:0:Tno01910136413661362136413651363
ECOL585056:2:Tno01879140114031399140114021400
ECOL585057:0:Tno01967178616221618162016211619
ECOL585397:0:Tno02050181114331429143114321430
ECOL83334:0:Tno01857172013131309131113121310
ECOLI:0:Tno01702155812211217121912201218
ECOO157:0:Tno01827168513251321132313241322
EFAE226185:3:Tyes---10---
EFER585054:1:Tyes224922840231
ESP42895:1:Tyes3868127038663870386838673869
FALN326424:0:Tyes---0----
FMAG334413:1:Tyes---0----
FNUC190304:0:Tyes-------0
FPHI484022:1:Tyes---0----
FSP1855:0:Tyes------0-
FTUL401614:0:Tyes---0----
GBET391165:0:Tyes---0----
GFOR411154:0:Tyes-0------
GKAU235909:1:Tyes10143102
GOXY290633:5:Tyes---0----
GTHE420246:1:Tyes10143102
GVIO251221:0:Tyes93609361526-9360-
HAUR316274:2:Tyes154701547---83-
HCHE349521:0:Tyes-012541114-125412521
HINF281310:0:Tyes23240231
HINF374930:0:Tyes10551204213
HINF71421:0:Tno23240231
HMOD498761:0:Tyes-4301342
HNEP81032:0:Tyes---0----
HSOM205914:1:Tyes366135636630549547-
HSOM228400:0:Tno2347840231
JSP290400:1:Tyes9899849860--984484
KPNE272620:2:Tyes2459240231
KRAD266940:2:Fyes010483----
LACI272621:0:Tyes-8408410843841840842
LBRE387344:2:Tyes---0148---
LCAS321967:1:Tyes23250231
LCHO395495:0:Tyes-1097981--109501096
LDEL321956:0:Tyes---0----
LDEL390333:0:Tyes---0----
LGAS324831:0:Tyes---0463---
LHEL405566:0:Tyes---0----
LJOH257314:0:Tyes---0421---
LLAC272622:5:Tyes-0-32-01
LLAC272623:0:Tyes10143102
LMES203120:1:Tyes---0----
LPLA220668:0:Tyes---10---
LREU557436:0:Tyes---01---
LSAK314315:0:Tyes---10---
LSPH444177:1:Tyes---0----
LXYL281090:0:Tyes-440-0--440-
MABS561007:1:Tyes---0----
MAVI243243:0:Tyes---0----
MBOV233413:0:Tno---0----
MBOV410289:0:Tno---0----
MFLA265072:0:Tyes---0----
MFLO265311:0:Tyes---0----
MGIL350054:3:Tyes---0----
MLOT266835:2:Tyes108725926-475302004
MPUL272635:0:Tyes----0---
MSED399549:0:Tyes---0----
MSME246196:0:Tyes2272024422852-24421374-
MSP164756:1:Tno-02770--0-
MSP164757:0:Tno-02746--0-
MSP189918:2:Tyes-02800--0-
MSP266779:3:Tyes-1351370--135-
MSP400668:0:Tyes337203016030-4561605-
MSP409:2:Tyes---0----
MSUC221988:0:Tyes1411603141225-14116030
MTBCDC:0:Tno---0----
MTBRV:0:Tno---0----
MTHE264732:0:Tyes2762--201
MTUB336982:0:Tno---0----
MTUB419947:0:Tyes---0----
MVAN350058:0:Tyes---0----
NFAR247156:2:Tyes---0----
NSP103690:6:Tyes---0----
NSP35761:1:Tyes--0472----
OANT439375:4:Tyes--7161094-716-0
OANT439375:5:Tyes01150----2-
OIHE221109:0:Tyes10143102
PACN267747:0:Tyes0101203301-
PAER178306:0:Tyes---0----
PAER208963:0:Tyes-4-0--4-
PAER208964:0:Tno-0-4--0-
PARS340102:0:Tyes---0----
PATL342610:0:Tyes---0----
PDIS435591:0:Tyes-0-170----
PENT384676:0:Tyes-0-45-0-
PFLU205922:0:Tyes-0223145-02232
PFLU216595:1:Tyes-0137415351534137413761
PFLU220664:0:Tyes-490492454920491
PING357804:0:Tyes23240231
PINT246198:1:Tyes-0------
PISL384616:0:Tyes---0----
PLUM243265:0:Fyes23240231
PMOB403833:0:Tyes66136614023-
PMUL272843:1:Tyes21204213
PNAP365044:8:Tyes--2---0-
PPEN278197:0:Tyes---10---
PPRO298386:1:Tyes23240231
PPUT160488:0:Tno---45-0-
PPUT351746:0:Tyes---10-5-
PPUT76869:0:Tno---10-5-
PRUM264731:0:Tyes-0------
PSP117:0:Tyes41450413
PSP296591:2:Tyes--9970--996-
PSYR205918:0:Tyes41811134184541801112
PSYR223283:2:Tyes-10971095011095271096
RCAS383372:0:Tyes-0-2856--0-
RDEN375451:4:Tyes-07991423---800
RETL347834:2:Tyes---0----
RETL347834:4:Tyes-----0--
RETL347834:5:Tyes25531463592---03343
REUT264198:2:Tyes------0-
REUT264198:3:Tyes--0--0-1
REUT381666:1:Tyes--1--1-0
RFER338969:1:Tyes0-0--269114642690
RLEG216596:2:Tyes0-------
RLEG216596:6:Tyes-6300997-09722901
RPOM246200:1:Tyes---0----
RRUB269796:1:Tyes0-02044-0--
RSAL288705:0:Tyes0--2936----
RSOL267608:0:Tyes0-------
RSOL267608:1:Tyes-242-0-2444243
RSP101510:3:Fyes2-2481-203253
RSP357808:0:Tyes-1741-550--17410
RSPH272943:3:Tyes0--46----
RSPH349101:1:Tno0--46----
RSPH349102:4:Tyes---0----
RSPH349102:5:Tyes-0------
RXYL266117:0:Tyes9462204734120
SACI330779:0:Tyes---0----
SAGA205921:0:Tno10143102
SAGA208435:0:Tno10143102
SAGA211110:0:Tyes10143102
SARE391037:0:Tyes---0----
SAUR158878:1:Tno---01---
SAUR158879:1:Tno---01---
SAUR196620:0:Tno---01---
SAUR273036:0:Tno---01---
SAUR282458:0:Tno---01---
SAUR282459:0:Tno---01---
SAUR359786:1:Tno---01---
SAUR359787:1:Tno---01---
SAUR367830:3:Tno---01---
SAUR418127:0:Tyes---01---
SAUR426430:0:Tno---01---
SAUR93061:0:Fno---01---
SAUR93062:1:Tno---01---
SAVE227882:1:Fyes8610441144104409441144116533
SBAL399599:3:Tyes---0----
SBAL402882:1:Tno---0----
SBOY300268:1:Tyes0156311381139113711381563960
SCO:2:Fyes11123110
SDEG203122:0:Tyes-0------
SDEN318161:0:Tyes---0----
SDYS300267:1:Tyes2685-26852684-268528080
SENT209261:0:Tno21204213
SENT220341:0:Tno21204213
SENT295319:0:Tno-2-30-21
SENT321314:2:Tno23240231
SENT454169:2:Tno23240231
SEPI176279:1:Tyes---01---
SEPI176280:0:Tno---01---
SERY405948:0:Tyes427842786140-427842784277
SFLE198214:0:Tyes34419931556155715531556-0
SFLE373384:0:Tno0-1099109811011099-1316
SGLO343509:3:Tyes010--01359
SHAE279808:0:Tyes34301342
SHAL458817:0:Tyes23240231
SHIGELLA:0:Tno351-1416141514191416-0
SLAC55218:1:Fyes---0----
SLOI323850:0:Tyes---0----
SMED366394:1:Tyes--0-----
SMED366394:2:Tyes9841111---0957-
SMED366394:3:Tyes---0---173
SMEL266834:1:Tyes615689---0583-
SMEL266834:2:Tyes--0404---623
SONE211586:1:Tyes---0----
SPEA398579:0:Tno23240231
SPRO399741:1:Tyes0547688686690688687689
SSAP342451:2:Tyes6876866870689687686688
SSED425104:0:Tyes---0----
SSOL273057:0:Tyes---0----
SSON300269:1:Tyes01675122412251222122416751223
SSP292414:1:Tyes--0-----
SSP292414:2:Tyes---0----
SSP321327:0:Tyes---0----
SSP321332:0:Tyes---0----
SSP644076:4:Fyes3-3--30-
SSP644076:6:Fyes---0----
SSP94122:1:Tyes-0-1430--0-
STHE292459:0:Tyes-1600159801-21599
STOK273063:0:Tyes---0----
STRO369723:0:Tyes---0----
STYP99287:1:Tyes23240231
TERY203124:0:Tyes---0----
TFUS269800:0:Tyes---0----
TLET416591:0:Tyes-204017474115511521154
TMAR243274:0:Tyes03054031
TPEN368408:1:Tyes---0----
TPET390874:0:Tno39879869829849869870
TPSE340099:0:Tyes10143102
TROS309801:0:Tyes--180----0
TROS309801:1:Tyes---0----
TSP1755:0:Tyes08745786
TSP28240:0:Tyes20139--139-140
TTEN273068:0:Tyes3453301342
VCHO:1:Fyes23240231
VCHO345073:0:Tno21204213
VEIS391735:1:Tyes23079259421025-94215780
VFIS312309:2:Tyes23240231
VPAR223926:0:Tyes21204213
VVUL196600:1:Tyes23240231
VVUL216895:0:Tno23240231
XAUT78245:1:Tyes-0------
XAXO190486:0:Tyes---0----
XCAM190485:0:Tyes---0----
XCAM314565:0:Tno---0----
XCAM316273:0:Tno---0----
XCAM487884:0:Tno---0----
XFAS160492:2:Tno---0----
XFAS183190:1:Tyes---0----
XFAS405440:0:Tno---0----
XORY291331:0:Tno---0----
XORY342109:0:Tyes---0----
XORY360094:0:Tno---0----
YENT393305:1:Tyes2142240231
YPES187410:5:Tno3907329390710171517132683
YPES214092:3:Tno38243767382410240124031450
YPES349746:2:Tno3970443397010168716892913
YPES360102:3:Tyes385011238501020252027818
YPES377628:2:Tno368358368310213221342518
YPES386656:2:Tno31003296310003690167816791228
YPSE273123:2:Tno3848132384810257725791566
YPSE349747:2:Tno3971133397110147814762428



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