CANDIDATE ID: 72

CANDIDATE ID: 72

NUMBER OF GENES: 8
AVERAGE SCORE:    9.9969332e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    3.7500000e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7306 (hyfI) (b2489)
   Products of gene:
     - MONOMER0-151 (hydrogenase 4, small subunit)
     - CPLX0-250 (hydrogenase 4)
       Reactions:
        2 H+ + 2 e-  ->  H2

- G7304 (hyfG) (b2487)
   Products of gene:
     - MONOMER0-150 (hydrogenase 4, large subunit)
     - CPLX0-250 (hydrogenase 4)
       Reactions:
        2 H+ + 2 e-  ->  H2

- G7303 (hyfF) (b2486)
   Products of gene:
     - MONOMER0-143 (hydrogenase 4, component F)
     - CPLX0-250 (hydrogenase 4)
       Reactions:
        2 H+ + 2 e-  ->  H2

- EG10480 (hycG) (b2719)
   Products of gene:
     - HYCG-MONOMER (hydrogenase 3 and formate hydrogenlyase complex, HycG subunit)
     - HYDROG3-CPLX (hydrogenase 3)
       Reactions:
        2 H+ + 2 e-  ->  H2
     - FHLMULTI-CPLX (formate hydrogenlyase complex)
       Reactions:
        formate + H+  ->  CO2 + H2
         In pathways
         ANARESP1-PWY (respiration (anaerobic))
         FERMENTATION-PWY (mixed acid fermentation)

- EG10479 (hycF) (b2720)
   Products of gene:
     - HYCF-MONOMER (formate hydrogenlyase complex iron-sulfur protein)
     - HYDROG3-CPLX (hydrogenase 3)
       Reactions:
        2 H+ + 2 e-  ->  H2
     - FHLMULTI-CPLX (formate hydrogenlyase complex)
       Reactions:
        formate + H+  ->  CO2 + H2
         In pathways
         ANARESP1-PWY (respiration (anaerobic))
         FERMENTATION-PWY (mixed acid fermentation)

- EG10478 (hycE) (b2721)
   Products of gene:
     - HYCELARGE-MONOMER (hydrogenase 3, large subunit)
     - HYDROG3-CPLX (hydrogenase 3)
       Reactions:
        2 H+ + 2 e-  ->  H2
     - FHLMULTI-CPLX (formate hydrogenlyase complex)
       Reactions:
        formate + H+  ->  CO2 + H2
         In pathways
         ANARESP1-PWY (respiration (anaerobic))
         FERMENTATION-PWY (mixed acid fermentation)

- EG10477 (hycD) (b2722)
   Products of gene:
     - HYCD-MONOMER (hydrogenase 3, membrane subunit)
     - HYDROG3-CPLX (hydrogenase 3)
       Reactions:
        2 H+ + 2 e-  ->  H2
     - FHLMULTI-CPLX (formate hydrogenlyase complex)
       Reactions:
        formate + H+  ->  CO2 + H2
         In pathways
         ANARESP1-PWY (respiration (anaerobic))
         FERMENTATION-PWY (mixed acid fermentation)

- EG10476 (hycC) (b2723)
   Products of gene:
     - HYCC-MONOMER (hydrogenase 3, membrane subunit)
     - HYDROG3-CPLX (hydrogenase 3)
       Reactions:
        2 H+ + 2 e-  ->  H2
     - FHLMULTI-CPLX (formate hydrogenlyase complex)
       Reactions:
        formate + H+  ->  CO2 + H2
         In pathways
         ANARESP1-PWY (respiration (anaerobic))
         FERMENTATION-PWY (mixed acid fermentation)



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ORGANISMS CONTAINING AT LEAST 7 GENES FROM THE GROUP:

Total number of orgs: 130
Effective number of orgs (counting one per cluster within 468 clusters): 89

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317587
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329537
YPES386656 ncbi Yersinia pestis Pestoides F7
YPES377628 ncbi Yersinia pestis Nepal5167
YPES360102 ncbi Yersinia pestis Antiqua7
YPES349746 ncbi Yersinia pestis Angola7
YPES214092 ncbi Yersinia pestis CO927
YPES187410 ncbi Yersinia pestis KIM 107
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80818
XAUT78245 ncbi Xanthobacter autotrophicus Py28
WSUC273121 ncbi Wolinella succinogenes DSM 17408
UMET351160 ncbi uncultured methanogenic archaeon RC-I8
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB48
TPEN368408 ncbi Thermofilum pendens Hrk 58
TKOD69014 ncbi Thermococcus kodakarensis KOD18
TCRU317025 ncbi Thiomicrospira crunogena XCL-27
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT27
STRO369723 ncbi Salinispora tropica CNB-4407
SSP387093 ncbi Sulfurovum sp. NBC37-18
SSON300269 ncbi Shigella sonnei Ss0468
SPRO399741 ncbi Serratia proteamaculans 5688
SMEL266834 ncbi Sinorhizobium meliloti 10217
SMED366394 ncbi Sinorhizobium medicae WSM4198
SMAR399550 ncbi Staphylothermus marinus F18
SHIGELLA ncbi Shigella flexneri 2a str. 2457T8
SFLE373384 ncbi Shigella flexneri 5 str. 84018
SFLE198214 ncbi Shigella flexneri 2a str. 3018
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4767
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B677
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91507
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT187
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty27
SDYS300267 ncbi Shigella dysenteriae Sd1978
SBOY300268 ncbi Shigella boydii Sb2278
SARE391037 ncbi Salinispora arenicola CNS-2057
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170297
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.17
RSP357808 ncbi Roseiflexus sp. RS-18
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111708
RPAL316058 ncbi Rhodopseudomonas palustris HaA28
RPAL316057 ncbi Rhodopseudomonas palustris BisB58
RPAL316056 ncbi Rhodopseudomonas palustris BisB188
RPAL316055 ncbi Rhodopseudomonas palustris BisA538
RMET266264 ncbi Ralstonia metallidurans CH347
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38418
RFER338969 ncbi Rhodoferax ferrireducens T1188
REUT381666 ncbi Ralstonia eutropha H168
RCAS383372 ncbi Roseiflexus castenholzii DSM 139417
PSP296591 ncbi Polaromonas sp. JS6667
PHOR70601 ncbi Pyrococcus horikoshii OT38
PFUR186497 ncbi Pyrococcus furiosus DSM 36388
PARC259536 ncbi Psychrobacter arcticus 273-47
PABY272844 ncbi Pyrococcus abyssi GE58
NSP387092 ncbi Nitratiruptor sp. SB155-28
NSP35761 Nocardioides sp.8
NOCE323261 ncbi Nitrosococcus oceani ATCC 197078
NMUL323848 ncbi Nitrosospira multiformis ATCC 251968
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra8
MTUB336982 ncbi Mycobacterium tuberculosis F118
MTHE264732 ncbi Moorella thermoacetica ATCC 390738
MTBRV ncbi Mycobacterium tuberculosis H37Rv8
MTBCDC ncbi Mycobacterium tuberculosis CDC15518
MMAZ192952 ncbi Methanosarcina mazei Go18
MMAG342108 ncbi Magnetospirillum magneticum AMB-17
MLAB410358 ncbi Methanocorpusculum labreanum Z8
MHUN323259 ncbi Methanospirillum hungatei JF-18
MCAP243233 ncbi Methylococcus capsulatus Bath8
MBUR259564 ncbi Methanococcoides burtonii DSM 62427
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P28
MBOV233413 ncbi Mycobacterium bovis AF2122/978
MBAR269797 ncbi Methanosarcina barkeri Fusaro7
MAVI243243 ncbi Mycobacterium avium 1048
MAEO419665 ncbi Methanococcus aeolicus Nankai-37
MACE188937 ncbi Methanosarcina acetivorans C2A8
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785787
GURA351605 ncbi Geobacter uraniireducens Rf48
GSUL243231 ncbi Geobacter sulfurreducens PCA8
GMET269799 ncbi Geobacter metallireducens GS-158
ESP42895 Enterobacter sp.7
EFER585054 ncbi Escherichia fergusonii ATCC 354698
ECOO157 ncbi Escherichia coli O157:H7 EDL9338
ECOL83334 Escherichia coli O157:H78
ECOL585397 ncbi Escherichia coli ED1a7
ECOL585057 ncbi Escherichia coli IAI398
ECOL585056 ncbi Escherichia coli UMN0268
ECOL585055 ncbi Escherichia coli 559898
ECOL585035 ncbi Escherichia coli S887
ECOL585034 ncbi Escherichia coli IAI18
ECOL481805 ncbi Escherichia coli ATCC 87398
ECOL469008 ncbi Escherichia coli BL21(DE3)8
ECOL439855 ncbi Escherichia coli SMS-3-58
ECOL413997 ncbi Escherichia coli B str. REL6068
ECOL409438 ncbi Escherichia coli SE118
ECOL405955 ncbi Escherichia coli APEC O17
ECOL364106 ncbi Escherichia coli UTI897
ECOL362663 ncbi Escherichia coli 5367
ECOL331111 ncbi Escherichia coli E24377A7
ECOL316407 ncbi Escherichia coli K-12 substr. W31108
ECOL199310 ncbi Escherichia coli CFT0737
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10438
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough8
DSP255470 ncbi Dehalococcoides sp. CBDB18
DSP216389 ncbi Dehalococcoides sp. BAV18
DPSY177439 ncbi Desulfotalea psychrophila LSv548
DHAF138119 ncbi Desulfitobacterium hafniense Y518
DETH243164 ncbi Dehalococcoides ethenogenes 1958
CMET456442 ncbi Candidatus Methanoregula boonei 6A87
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29018
CFET360106 ncbi Campylobacter fetus fetus 82-408
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C7
CCUR360105 ncbi Campylobacter curvus 525.928
CCON360104 ncbi Campylobacter concisus 138268
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80527
BXEN266265 ncbi Burkholderia xenovorans LB4007
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54827
BTHA271848 ncbi Burkholderia thailandensis E2648
BPSE320373 ncbi Burkholderia pseudomallei 6687
BPSE320372 ncbi Burkholderia pseudomallei 1710b7
BPSE272560 ncbi Burkholderia pseudomallei K962437
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1108
ASP76114 ncbi Aromatoleum aromaticum EbN17
ASP62977 ncbi Acinetobacter sp. ADP18
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4498
APHA212042 ncbi Anaplasma phagocytophilum HZ7
AHYD196024 Aeromonas hydrophila dhakensis8
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232708
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C8
ACRY349163 ncbi Acidiphilium cryptum JF-58
ACEL351607 ncbi Acidothermus cellulolyticus 11B8
ACAU438753 ncbi Azorhizobium caulinodans ORS 5718


Names of the homologs of the genes in the group in each of these orgs
  G7306   G7304   G7303   EG10480   EG10479   EG10478   EG10477   EG10476   
YPSE349747 YPSIP31758_1455YPSIP31758_1456YPSIP31758_1464YPSIP31758_1461YPSIP31758_1456YPSIP31758_1460YPSIP31758_1464
YPSE273123 YPTB2586YPTB2585YPTB2577YPTB2580YPTB2585YPTB2581YPTB2577
YPES386656 YPDSF_1964YPDSF_1963YPDSF_1955YPDSF_1958YPDSF_1963YPDSF_1959YPDSF_1955
YPES377628 YPN_2149YPN_2148YPN_2140YPN_2143YPN_2148YPN_2144YPN_2140
YPES360102 YPA_2046YPA_2045YPA_2037YPA_2040YPA_2045YPA_2041YPA_2037
YPES349746 YPANGOLA_A1815YPANGOLA_A1814YPANGOLA_A1806YPANGOLA_A1809YPANGOLA_A1814YPANGOLA_A1810YPANGOLA_A1806
YPES214092 YPO2554YPO2553YPO2545YPO2548YPO2553YPO2549YPO2545
YPES187410 Y1631Y1632Y1640Y1637Y1632Y1636Y1640
YENT393305 YE2806YE2804YE2803YE2806YE2805YE2804YE2800YE2799
XAUT78245 XAUT_0171XAUT_0170XAUT_0169XAUT_0171XAUT_4625XAUT_0170XAUT_0167XAUT_0166
WSUC273121 WS1836WS1838WS1839WS1836WS1837WS1838WS1841WS1842
UMET351160 RCIX2382RCIX2383RCIX2384RCIX2382RCIX2382RCIX2383RCIX2386RCIX2387
TTEN273068 TTE1698TTE1700TTE1702TTE1698TTE1699TTE1700TTE1705TTE1706
TPEN368408 TPEN_0181TPEN_0183TPEN_0185TPEN_0181TPEN_0182TPEN_0183TPEN_0187TPEN_0188
TKOD69014 TK2089TK2091TK1220TK2089TK2078TK2091TK2092TK2087
TCRU317025 TCR_0818TCR_0820TCR_0063TCR_0818TCR_0825TCR_0824TCR_0063
STYP99287 STM2847STM2849STM2847STM2848STM2849STM2850STM2851
STRO369723 STROP_0390STROP_4286STROP_4054STROP_0390STROP_4057STROP_4286STROP_4054
SSP387093 SUN_0264SUN_0263SUN_0259SUN_0845SUN_2223SUN_0846SUN_0260SUN_0259
SSON300269 SSO_2570SSO_2868SSO_2567SSO_2866SSO_2867SSO_2868SSO_2869SSO_2870
SPRO399741 SPRO_2428SPRO_2430SPRO_2432SPRO_2428SPRO_2429SPRO_2430SPRO_2431SPRO_2432
SMEL266834 SMC01913SMA1529SMC03179SMC01913SMC01922SMA1529SMA1536
SMED366394 SMED_0889SMED_3620SMED_2806SMED_0889SMED_0898SMED_3620SMED_3614SMED_3625
SMAR399550 SMAR_0018SMAR_1061SMAR_0645SMAR_0018SMAR_1062SMAR_1061SMAR_1060SMAR_0028
SHIGELLA HYFIHYCEHYFFHYFIHYFHHYCEHYCDHYCC
SFLE373384 SFV_2534SFV_2782SFV_2531SFV_2784SFV_2783SFV_2782SFV_2781SFV_2780
SFLE198214 AAN44035.1AAN44229.1AAN44031.1AAN44035.1AAN44034.1AAN44229.1AAN44230.1AAN44231.1
SENT454169 SEHA_C3034SEHA_C3036SEHA_C3034SEHA_C3035SEHA_C3036SEHA_C3037SEHA_C3038
SENT321314 SCH_2780SCH_2782SCH_2780SCH_2781SCH_2782SCH_2783SCH_2784
SENT295319 SPA2705SPA2707SPA2705SPA2706SPA2707SPA2708SPA2709
SENT220341 STY2969STY2971STY2969STY2970STY2971STY2972STY2973
SENT209261 T2749T2751T2749T2750T2751T2752T2753
SDYS300267 SDY_2678SDY_2918SDY_2675SDY_2678SDY_2917SDY_2918SDY_2919SDY_2671
SBOY300268 SBO_2510SBO_2797SBO_2507SBO_2799SBO_2798SBO_2797SBO_2796SBO_2795
SARE391037 SARE_0461SARE_4460SARE_4452SARE_0461SARE_4455SARE_4721SARE_4452
RSPH349101 RSPH17029_1737RSPH17029_1738RSPH17029_1175RSPH17029_1743RSPH17029_1738RSPH17029_1742RSPH17029_3449
RSPH272943 RSP_0101RSP_0102RSP_2513RSP_0107RSP_0102RSP_0106RSP_3715
RSP357808 ROSERS_2990ROSERS_3675ROSERS_2232ROSERS_2990ROSERS_2235ROSERS_3675ROSERS_2236ROSERS_2232
RRUB269796 RRU_A0321RRU_A0316RRU_A0320RRU_A0321RRU_A0318RRU_A0316RRU_A0317RRU_A0315
RPAL316058 RPB_1265RPB_1264RPB_1263RPB_1265RPB_1354RPB_1264RPB_1261RPB_1260
RPAL316057 RPD_3850RPD_3851RPD_3852RPD_3850RPD_2877RPD_3851RPD_3854RPD_3855
RPAL316056 RPC_4568RPC_4570RPC_4571RPC_4568RPC_4569RPC_4570RPC_4574RPC_4575
RPAL316055 RPE_0957RPE_0956RPE_0955RPE_0957RPE_1717RPE_1712RPE_0953RPE_0952
RMET266264 RMET_4666RMET_4667RMET_4668RMET_4666RMET_4667RMET_4670RMET_4671
RLEG216596 PRL110292PRL110293PRL110294PRL110292RL1709PRL110293PRL110296PRL110297
RFER338969 RFER_3287RFER_3288RFER_3289RFER_3287RFER_3090RFER_3288RFER_3291RFER_3292
REUT381666 H16_A2201H16_A2200H16_A2199H16_A2201H16_A1058H16_A2200H16_A2197H16_A2196
RCAS383372 RCAS_2089RCAS_1321RCAS_2089RCAS_3387RCAS_1321RCAS_3388RCAS_3384
PSP296591 BPRO_0921BPRO_0920BPRO_0919BPRO_0921BPRO_0920BPRO_0917BPRO_0916
PHOR70601 PH1434PH1437PH1452PH1434PH1440PH1437PH1439PH1431
PFUR186497 PF1432PF1434PF1430PF1432PF1436PF1434PF1435PF1430
PARC259536 PSYC_0585PSYC_0586PSYC_0594PSYC_0585PSYC_0591PSYC_0586PSYC_0590
PABY272844 PAB1890PAB1394PAB1888PAB1396PAB1395PAB1394PAB1393PAB1392
NSP387092 NIS_0714NIS_0715NIS_0716NIS_0714NIS_0297NIS_0715NIS_0718NIS_0719
NSP35761 NOCA_4470NOCA_4465NOCA_4466NOCA_4470NOCA_0528NOCA_4465NOCA_4468NOCA_4469
NOCE323261 NOC_2564NOC_1125NOC_1281NOC_2564NOC_1120NOC_1125NOC_1121NOC_2554
NMUL323848 NMUL_A1092NMUL_A1015NMUL_A1591NMUL_A1092NMUL_A1020NMUL_A1015NMUL_A1019NMUL_A1023
MTUB419947 MRA_0086MRA_0091MRA_0090MRA_0086MRA_3186MRA_0091MRA_0088MRA_0087
MTUB336982 TBFG_10083TBFG_10088TBFG_10087TBFG_10083TBFG_13174TBFG_10088TBFG_10085TBFG_10084
MTHE264732 MOTH_2184MOTH_2186MOTH_2188MOTH_2184MOTH_2185MOTH_2186MOTH_2190MOTH_2191
MTBRV RV0082RV0087RV0086RV0082RV3153RV0087RV0084RV0083
MTBCDC MT0089MT3236MT0093MT0089MT3241MT3236MT0091MT0090
MMAZ192952 MM2322MM2324MM1062MM2322MM2486MM1063MM1060MM1059
MMAG342108 AMB0206AMB0207AMB0208AMB0206AMB0207AMB0210AMB0211
MLAB410358 MLAB_1622MLAB_0959MLAB_0955MLAB_0957MLAB_1619MLAB_0959MLAB_0960MLAB_0955
MHUN323259 MHUN_2588MHUN_2590MHUN_1819MHUN_2588MHUN_1746MHUN_1745MHUN_1821MHUN_1822
MCAP243233 MCA_1137MCA_1138MCA_1139MCA_1137MCA_1352MCA_1138MCA_1141MCA_1142
MBUR259564 MBUR_1296MBUR_1294MBUR_0135MBUR_1292MBUR_1294MBUR_1293MBUR_0135
MBOV410289 BCG_0115BCG_0120BCG_0119BCG_0115BCG_3176BCG_0120BCG_0117BCG_0116
MBOV233413 MB0085MB0090MB0089MB0085MB3177MB0090MB0087MB0086
MBAR269797 MBAR_A2455MBAR_A0148MBAR_A2455MBAR_A3407MBAR_A0148MBAR_A0151MBAR_A3402
MAVI243243 MAV_5114MAV_5109MAV_5110MAV_5114MAV_4041MAV_5109MAV_5112MAV_5113
MAEO419665 MAEO_0938MAEO_0306MAEO_0940MAEO_0938MAEO_0371MAEO_0942MAEO_0943
MACE188937 MA4373MA4372MA4371MA4373MA1500MA4372MA4369MA4368
KPNE272620 GKPORF_B2389GKPORF_B2391GKPORF_B2389GKPORF_B2390GKPORF_B2391GKPORF_B2392GKPORF_B2393
GURA351605 GURA_2651GURA_0803GURA_0889GURA_2651GURA_0886GURA_0803GURA_0891GURA_4066
GSUL243231 GSU_0745GSU_3444GSU_0742GSU_0745GSU_0346GSU_3444GSU_0740GSU_0734
GMET269799 GMET_0369GMET_0153GMET_0372GMET_0369GMET_0369GMET_0153GMET_2600GMET_0375
ESP42895 ENT638_3192ENT638_3194ENT638_3192ENT638_3193ENT638_3194ENT638_3195ENT638_3196
EFER585054 EFER_0686EFER_0688EFER_0689EFER_0358EFER_0357EFER_0688EFER_0355EFER_0354
ECOO157 HYFIHYCEHYFFHYCGHYCFHYCEHYCDHYCC
ECOL83334 ECS3351ECS3577ECS3348ECS3575ECS3576ECS3577ECS3578ECS3579
ECOL585397 ECED1_3170ECED1_3172ECED1_3170ECED1_3171ECED1_3172ECED1_3173ECED1_3174
ECOL585057 ECIAI39_2628ECIAI39_2909ECIAI39_2625ECIAI39_2907ECIAI39_2908ECIAI39_2909ECIAI39_2910ECIAI39_2911
ECOL585056 ECUMN_2802ECUMN_3043ECUMN_2799ECUMN_3041ECUMN_3042ECUMN_3043ECUMN_3044ECUMN_3045
ECOL585055 EC55989_2774EC55989_2987EC55989_2771EC55989_2985EC55989_2986EC55989_2987EC55989_2988EC55989_2989
ECOL585035 ECS88_2984ECS88_2986ECS88_2984ECS88_2985ECS88_2986ECS88_2987ECS88_2988
ECOL585034 ECIAI1_2540ECIAI1_2815ECIAI1_2537ECIAI1_2813ECIAI1_2814ECIAI1_2815ECIAI1_2816ECIAI1_2817
ECOL481805 ECOLC_1187ECOLC_1189ECOLC_1190ECOLC_0993ECOLC_0992ECOLC_1189ECOLC_0990ECOLC_0989
ECOL469008 ECBD_1199ECBD_1201ECBD_1202ECBD_1006ECBD_1005ECBD_1201ECBD_1003ECBD_1002
ECOL439855 ECSMS35_2636ECSMS35_2846ECSMS35_2633ECSMS35_2844ECSMS35_2845ECSMS35_2846ECSMS35_2847ECSMS35_2848
ECOL413997 ECB_02381ECB_02571ECB_02378ECB_02569ECB_02570ECB_02571ECB_02572ECB_02573
ECOL409438 ECSE_2774ECSE_2969ECSE_2771ECSE_2967ECSE_2968ECSE_2969ECSE_2970ECSE_2971
ECOL405955 APECO1_3806APECO1_3804APECO1_3806APECO1_3805APECO1_3804APECO1_3803APECO1_3802
ECOL364106 UTI89_C3082UTI89_C3084UTI89_C3082UTI89_C3083UTI89_C3084UTI89_C3085UTI89_C3086
ECOL362663 ECP_2682ECP_2684ECP_2682ECP_2683ECP_2684ECP_2685ECP_2686
ECOL331111 ECE24377A_2771ECE24377A_3009ECE24377A_3007ECE24377A_3008ECE24377A_3009ECE24377A_3010ECE24377A_3011
ECOL316407 ECK2485:JW5805:B2489ECK2716:JW2691:B2721ECK2482:JW2471:B2486ECK2714:JW2689:B2719ECK2715:JW2690:B2720ECK2716:JW2691:B2721ECK2717:JW2692:B2722ECK2718:JW2693:B2723
ECOL199310 C3279C3281C3279C3280C3281C3282C3283
ECAR218491 ECA1239ECA1241ECA1242ECA1239ECA1240ECA1241ECA1245ECA1246
DVUL882 DVU_0432DVU_0430DVU_2286DVU_0432DVU_2289DVU_2291DVU_2287DVU_2286
DSP255470 CBDBA844CBDBA1653CBDBA1655CBDBA844CBDBA880CBDBA850CBDBA1658CBDBA1659
DSP216389 DEHABAV1_0780DEHABAV1_1317DEHABAV1_1318DEHABAV1_0780DEHABAV1_0812DEHABAV1_0785DEHABAV1_1320DEHABAV1_1321
DPSY177439 DP1042DP1043DP1044DP1042DP1042DP1318DP1046DP1047
DHAF138119 DSY3114DSY3115DSY3116DSY3114DSY2583DSY3115DSY3118DSY3119
DETH243164 DET_0862DET_1571DET_1572DET_0862DET_0928DET_0867DET_1574DET_1575
CMET456442 MBOO_0026MBOO_1123MBOO_1124MBOO_0026MBOO_1123MBOO_1126MBOO_1127
CHYD246194 CHY_1830CHY_1827CHY_1832CHY_1830CHY_1829CHY_1827CHY_1831CHY_1832
CFET360106 CFF8240_0125CFF8240_0127CFF8240_0128CFF8240_0125CFF8240_0126CFF8240_0127CFF8240_0131CFF8240_0132
CDES477974 DAUD_1100DAUD_1102DAUD_2161DAUD_1100DAUD_1102DAUD_1099DAUD_2158
CCUR360105 CCV52592_1637CCV52592_1635CCV52592_1038CCV52592_1637CCV52592_1636CCV52592_1635CCV52592_1790CCV52592_1791
CCON360104 CCC13826_0713CCC13826_0711CCC13826_1911CCC13826_0713CCC13826_0712CCC13826_0711CCC13826_1913CCC13826_1914
CBEI290402 CBEI_2995CBEI_2993CBEI_2988CBEI_2991CBEI_2993CBEI_2992CBEI_2988
BXEN266265 BXE_B0324BXE_B0325BXE_C0176BXE_B0324BXE_B0325BXE_C0178BXE_B0329
BTHE226186 BT_4066BT_4065BT_4060BT_4066BT_4063BT_4065BT_4064
BTHA271848 BTH_II1266BTH_II1265BTH_II1264BTH_II1266BTH_I1069BTH_II1265BTH_II1262BTH_II1261
BPSE320373 BURPS668_A1612BURPS668_A1613BURPS668_A1614BURPS668_A1612BURPS668_A1613BURPS668_A1616BURPS668_A1617
BPSE320372 BURPS1710B_B0123BURPS1710B_B0124BURPS1710B_B0125BURPS1710B_B0123BURPS1710B_B0124BURPS1710B_B0127BURPS1710B_B0128
BPSE272560 BPSS1142BPSS1143BPSS1144BPSS1142BPSS1143BPSS1146BPSS1147
BJAP224911 BLR6344BLR6343BLR6342BLR6344BLL4909BLR6343BLR6340BLR6339
ASP76114 EBA4186EBA4187EBA4190EBA4186EBA4187EBA4192EBA4193
ASP62977 ACIAD0731ACIAD0733ACIAD0376ACIAD0731ACIAD0738ACIAD0733ACIAD0737ACIAD0741
ASAL382245 ASA_1810ASA_1812ASA_1814ASA_1810ASA_1811ASA_1812ASA_1813ASA_1814
APHA212042 APH_0520APH_0732APH_0044APH_0520APH_0801APH_0732APH_0711
AHYD196024 AHA_2504AHA_2502AHA_2500AHA_2504AHA_2503AHA_2502AHA_2501AHA_2500
AFER243159 AFE_0943AFE_0944AFE_0945AFE_0943AFE_0482AFE_0944AFE_0947AFE_0948
ADEH290397 ADEH_3660ADEH_3659ADEH_3658ADEH_3660ADEH_3660ADEH_3659ADEH_3656ADEH_3655
ACRY349163 ACRY_1401ACRY_1400ACRY_1399ACRY_1401ACRY_1113ACRY_1400ACRY_1397ACRY_1396
ACEL351607 ACEL_0727ACEL_0270ACEL_0729ACEL_0727ACEL_0275ACEL_0270ACEL_0731ACEL_0726
ACAU438753 AZC_4355AZC_4356AZC_4357AZC_4355AZC_1676AZC_4356AZC_4359AZC_4360


Organism features enriched in list (features available for 126 out of the 130 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.0002661892
Disease:Bubonic_plague 0.000092766
Disease:Dysentery 0.000092766
Disease:Gastroenteritis 0.0002341913
Disease:Melioidosis 0.009906833
Disease:Tuberculosis 0.009906833
GC_Content_Range4:0-40 2.830e-188213
GC_Content_Range4:40-60 3.259e-977224
GC_Content_Range4:60-100 0.007797841145
GC_Content_Range7:0-30 0.0006245247
GC_Content_Range7:30-40 9.659e-146166
GC_Content_Range7:50-60 5.467e-845107
GC_Content_Range7:60-70 0.003287240134
Genome_Size_Range5:0-2 1.542e-614155
Genome_Size_Range5:2-4 0.000022224197
Genome_Size_Range5:4-6 2.313e-1476184
Genome_Size_Range9:1-2 0.000248214128
Genome_Size_Range9:2-3 0.000893114120
Genome_Size_Range9:4-5 1.178e-84396
Genome_Size_Range9:5-6 0.00009763388
Gram_Stain:Gram_Neg 0.000084590333
Gram_Stain:Gram_Pos 0.000039316150
Motility:No 0.002262421151
Motility:Yes 7.954e-679267
Oxygen_Req:Aerobic 0.000364525185
Oxygen_Req:Facultative 0.000103161201
Shape:Coccus 0.0000380582
Shape:Irregular_coccus 0.0031669917
Shape:Rod 0.000334691347



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 167
Effective number of orgs (counting one per cluster within 468 clusters): 129

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM40
VVUL216895 ncbi Vibrio vulnificus CMCP60
VVUL196600 ncbi Vibrio vulnificus YJ0160
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106330
VFIS312309 ncbi Vibrio fischeri ES1140
VCHO345073 ncbi Vibrio cholerae O3951
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169611
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TTUR377629 ncbi Teredinibacter turnerae T79010
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332231
TPET390874 ncbi Thermotoga petrophila RKU-10
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TLET416591 ncbi Thermotoga lettingae TMO0
TDEN243275 ncbi Treponema denticola ATCC 354050
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen1
STHE322159 ncbi Streptococcus thermophilus LMD-90
STHE299768 ncbi Streptococcus thermophilus CNRZ10660
STHE264199 ncbi Streptococcus thermophilus LMG 183110
SSUI391296 ncbi Streptococcus suis 98HAH330
SSUI391295 ncbi Streptococcus suis 05ZYH330
SSP94122 ncbi Shewanella sp. ANA-30
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370552 ncbi Streptococcus pyogenes MGAS102700
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103940
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SPNE488221 ncbi Streptococcus pneumoniae 705850
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-60
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-140
SPNE171101 ncbi Streptococcus pneumoniae R60
SPNE170187 ncbi Streptococcus pneumoniae G540
SPNE1313 Streptococcus pneumoniae0
SPEA398579 ncbi Shewanella pealeana ATCC 7003451
SMUT210007 ncbi Streptococcus mutans UA1590
SLOI323850 ncbi Shewanella loihica PV-40
SHAL458817 ncbi Shewanella halifaxensis HAW-EB41
SGOR29390 Streptococcus gordonii Challis0
SDEN318161 ncbi Shewanella denitrificans OS2170
SDEG203122 ncbi Saccharophagus degradans 2-400
SBAL402882 ncbi Shewanella baltica OS1850
SBAL399599 ncbi Shewanella baltica OS1950
SAGA211110 ncbi Streptococcus agalactiae NEM3160
SAGA208435 ncbi Streptococcus agalactiae 2603V/R0
SAGA205921 ncbi Streptococcus agalactiae A9090
SACI56780 ncbi Syntrophus aciditrophicus SB0
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332091
RALB246199 Ruminococcus albus 80
PTHE370438 ncbi Pelotomaculum thermopropionicum SI0
PSP117 Pirellula sp.1
PPRO298386 ncbi Photobacterium profundum SS90
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257450
PMUL272843 ncbi Pasteurella multocida multocida Pm700
PGIN242619 ncbi Porphyromonas gingivalis W830
PDIS435591 ncbi Parabacteroides distasonis ATCC 85030
PATL342610 ncbi Pseudoalteromonas atlantica T6c0
PAST100379 Onion yellows phytoplasma0
PAER178306 ncbi Pyrobaculum aerophilum IM21
PACN267747 ncbi Propionibacterium acnes KPA1712020
NMEN374833 ncbi Neisseria meningitidis 0534420
MXAN246197 ncbi Myxococcus xanthus DK 16221
MSYN262723 ncbi Mycoplasma synoviae 530
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E0
MSP400668 ncbi Marinomonas sp. MWYL11
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MLEP272631 ncbi Mycobacterium leprae TN0
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MART243272 ncbi Mycoplasma arthritidis 158L3-10
LXYL281090 ncbi Leifsonia xyli xyli CTCB070
LSPH444177 ncbi Lysinibacillus sphaericus C3-411
LSAK314315 ncbi Lactobacillus sakei sakei 23K0
LREU557436 ncbi Lactobacillus reuteri DSM 200160
LPLA220668 ncbi Lactobacillus plantarum WCFS10
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82930
LLAC272623 ncbi Lactococcus lactis lactis Il14030
LLAC272622 ncbi Lactococcus lactis cremoris SK110
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-000
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LCAS321967 ncbi Lactobacillus casei ATCC 3340
LBRE387344 ncbi Lactobacillus brevis ATCC 3670
LACI272621 ncbi Lactobacillus acidophilus NCFM0
KRAD266940 ncbi Kineococcus radiotolerans SRS302161
HSOM228400 ncbi Haemophilus somnus 23360
HSOM205914 ncbi Haemophilus somnus 129PT0
HINF71421 ncbi Haemophilus influenzae Rd KW200
HINF374930 ncbi Haemophilus influenzae PittEE0
HINF281310 ncbi Haemophilus influenzae 86-028NP0
HDUC233412 ncbi Haemophilus ducreyi 35000HP0
GOXY290633 ncbi Gluconobacter oxydans 621H0
GFOR411154 ncbi Gramella forsetii KT08030
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255860
FMAG334413 ncbi Finegoldia magna ATCC 293280
EFAE226185 ncbi Enterococcus faecalis V5830
DOLE96561 ncbi Desulfococcus oleovorans Hxd30
DNOD246195 ncbi Dichelobacter nodosus VCS1703A0
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G200
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPER289380 ncbi Clostridium perfringens SM1010
CPER195103 ncbi Clostridium perfringens ATCC 131240
CPER195102 ncbi Clostridium perfringens 130
CNOV386415 ncbi Clostridium novyi NT0
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3821
CMIC31964 ncbi Clavibacter michiganensis sepedonicus1
CMAQ397948 ncbi Caldivirga maquilingensis IC-1671
CKLU431943 ncbi Clostridium kluyveri DSM 5550
CJEI306537 ncbi Corynebacterium jeikeium K4111
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130320
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CEFF196164 ncbi Corynebacterium efficiens YS-3140
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131290
CDIF272563 ncbi Clostridium difficile 6300
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto0
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6570
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B0
CBOT498213 ncbi Clostridium botulinum B1 str. Okra0
CBOT441772 ncbi Clostridium botulinum F str. Langeland0
CBOT441771 ncbi Clostridium botulinum A str. Hall0
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193970
CBOT36826 Clostridium botulinum A0
CACE272562 ncbi Clostridium acetobutylicum ATCC 8240
CABO218497 ncbi Chlamydophila abortus S26/30
BTUR314724 ncbi Borrelia turicatae 91E1350
BLON206672 ncbi Bifidobacterium longum NCC27050
BLIC279010 ncbi Bacillus licheniformis ATCC 145801
BHER314723 ncbi Borrelia hermsii DAH0
BGAR290434 ncbi Borrelia garinii PBi0
BBUR224326 ncbi Borrelia burgdorferi B310
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP1667 Arthrobacter sp.0
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL030
APLE416269 ncbi Actinobacillus pleuropneumoniae L200
AORE350688 ncbi Alkaliphilus oremlandii OhILAs0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
AAUR290340 ncbi Arthrobacter aurescens TC10


Names of the homologs of the genes in the group in each of these orgs
  G7306   G7304   G7303   EG10480   EG10479   EG10478   EG10477   EG10476   
ZMOB264203
VVUL216895
VVUL196600
VPAR223926
VFIS312309
VCHO345073 VC0395_1123
VCHO VCA0155
UURE95667
UURE95664
UPAR505682
TWHI218496
TWHI203267
TTUR377629
TPSE340099 TETH39_0438
TPET390874
TPAL243276
TLET416591
TDEN243275
SWOL335541 SWOL_1700
STHE322159
STHE299768
STHE264199
SSUI391296
SSUI391295
SSP94122
SPYO370554
SPYO370553
SPYO370552
SPYO370551
SPYO319701
SPYO293653
SPYO286636
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SPNE488221
SPNE487214
SPNE487213
SPNE171101
SPNE170187
SPNE1313
SPEA398579 SPEA_3284
SMUT210007
SLOI323850
SHAL458817 SHAL_3361
SGOR29390
SDEN318161
SDEG203122
SBAL402882
SBAL399599
SAGA211110
SAGA208435
SAGA205921
SACI56780
RSAL288705 RSAL33209_2210
RALB246199
PTHE370438
PSP117 RB1431
PPRO298386
PPEN278197
PMUL272843
PGIN242619
PDIS435591
PATL342610
PAST100379
PAER178306 PAE2928
PACN267747
NMEN374833
MXAN246197 MXAN_1082
MSYN262723
MSUC221988
MSP400668 MMWYL1_3982
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MLEP272631
MHYO295358
MHYO262722
MHYO262719
MGEN243273
MFLO265311
MCAP340047
MART243272
LXYL281090
LSPH444177 BSPH_0608
LSAK314315
LREU557436
LPLA220668
LMES203120
LLAC272623
LLAC272622
LJOH257314
LINT363253
LHEL405566
LGAS324831
LDEL390333
LDEL321956
LCAS321967
LBRE387344
LACI272621
KRAD266940 KRAD_0046
HSOM228400
HSOM205914
HINF71421
HINF374930
HINF281310
HDUC233412
GOXY290633
GFOR411154
FNUC190304
FMAG334413
EFAE226185
DOLE96561
DNOD246195
DDES207559
CTRA471473
CTRA471472
CSUL444179
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPER289380
CPER195103
CPER195102
CNOV386415
CMUR243161
CMIC443906 CMM_1089
CMIC31964 CMS1407
CMAQ397948 CMAQ_0428
CKLU431943
CJEI306537 JK1986
CGLU196627
CFEL264202
CEFF196164
CDIP257309
CDIF272563
CCAV227941
CBOT536232
CBOT515621
CBOT508765
CBOT498213
CBOT441772
CBOT441771
CBOT441770
CBOT36826
CACE272562
CABO218497
BTUR314724
BLON206672
BLIC279010 BL02544
BHER314723
BGAR290434
BBUR224326
BAFZ390236
AYEL322098
AURANTIMONAS
ASP1667
APLE434271
APLE416269
AORE350688
ALAI441768
AFUL224325
AAUR290340


Organism features enriched in list (features available for 157 out of the 167 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 3.321e-115292
Disease:Botulism 0.001351155
Disease:Meningitis 0.001836367
Disease:Pharyngitis 0.000024288
Disease:Pneumonia 0.0035980812
Disease:Wide_range_of_infections 4.151e-71111
Disease:bronchitis_and_pneumonitis 0.000024288
Disease:otitis_media 0.005113144
Disease:sinusitis 0.005113144
Endospores:No 0.000085976211
GC_Content_Range4:0-40 2.636e-988213
GC_Content_Range4:60-100 6.732e-1210145
GC_Content_Range7:0-30 4.561e-93147
GC_Content_Range7:30-40 0.003445857166
GC_Content_Range7:40-50 0.000807345117
GC_Content_Range7:50-60 0.000093014107
GC_Content_Range7:60-70 7.368e-137134
Genome_Size_Range5:0-2 1.138e-767155
Genome_Size_Range5:4-6 0.000010329184
Genome_Size_Range5:6-10 0.0000348247
Genome_Size_Range9:0-1 1.970e-72027
Genome_Size_Range9:1-2 0.001878347128
Genome_Size_Range9:4-5 0.00413781696
Genome_Size_Range9:5-6 0.00168741388
Genome_Size_Range9:6-8 0.0000638138
Gram_Stain:Gram_Neg 0.000018968333
Gram_Stain:Gram_Pos 1.182e-1173150
Habitat:Host-associated 0.000128074206
Habitat:Specialized 0.0025731653
Motility:No 0.000055859151
Motility:Yes 0.000066252267
Optimal_temp.:- 4.520e-646257
Optimal_temp.:20-30 0.001836367
Optimal_temp.:30-35 0.001836367
Optimal_temp.:37 1.174e-751106
Oxygen_Req:Aerobic 3.365e-922185
Oxygen_Req:Anaerobic 0.003835638102
Oxygen_Req:Facultative 1.338e-883201
Pathogenic_in:Human 0.000127376213
Pathogenic_in:No 0.001259746226
Pathogenic_in:Swine 0.001351155
Salinity:Non-halophilic 1.114e-649106
Shape:Coccus 0.00015783682
Shape:Sphere 2.087e-61519
Temp._range:Mesophilic 0.0001327142473



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ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 44
Effective number of orgs (counting one per cluster within 468 clusters): 37

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
SMAR399550 ncbi Staphylothermus marinus F1 5.288e-82738
TPEN368408 ncbi Thermofilum pendens Hrk 5 3.516e-73458
MLAB410358 ncbi Methanocorpusculum labreanum Z 5.303e-73638
PHOR70601 ncbi Pyrococcus horikoshii OT3 9.080e-73888
PABY272844 ncbi Pyrococcus abyssi GE5 3.341e-64568
PFUR186497 ncbi Pyrococcus furiosus DSM 3638 3.648e-64618
TKOD69014 ncbi Thermococcus kodakarensis KOD1 4.049e-64678
MHUN323259 ncbi Methanospirillum hungatei JF-1 5.492e-64858
UMET351160 ncbi uncultured methanogenic archaeon RC-I 0.00001885658
DETH243164 ncbi Dehalococcoides ethenogenes 195 0.00002135748
APHA212042 ncbi Anaplasma phagocytophilum HZ 0.00002473287
DSP216389 ncbi Dehalococcoides sp. BAV1 0.00002495858
DSP255470 ncbi Dehalococcoides sp. CBDB1 0.00002705918
MMAZ192952 ncbi Methanosarcina mazei Go1 0.00003056008
MAEO419665 ncbi Methanococcus aeolicus Nankai-3 0.00003453447
MACE188937 ncbi Methanosarcina acetivorans C2A 0.00006026538
CMET456442 ncbi Candidatus Methanoregula boonei 6A8 0.00011964117
CFET360106 ncbi Campylobacter fetus fetus 82-40 0.00013357218
CCON360104 ncbi Campylobacter concisus 13826 0.00017757478
CCUR360105 ncbi Campylobacter curvus 525.92 0.00020397608
NSEN222891 ncbi Neorickettsia sennetsu Miyayama 0.00022702506
MBUR259564 ncbi Methanococcoides burtonii DSM 6242 0.00027444637
NSP387092 ncbi Nitratiruptor sp. SB155-2 0.00032058048
MTBCDC ncbi Mycobacterium tuberculosis CDC1551 0.00053538578
MTBRV ncbi Mycobacterium tuberculosis H37Rv 0.00058218668
MBOV233413 ncbi Mycobacterium bovis AF2122/97 0.00058768678
ACEL351607 ncbi Acidothermus cellulolyticus 11B 0.00059858698
MTUB336982 ncbi Mycobacterium tuberculosis F11 0.00060418708
SSP387093 ncbi Sulfurovum sp. NBC37-1 0.00060418708
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P2 0.00060418708
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra 0.00060978718
WSUC273121 ncbi Wolinella succinogenes DSM 1740 0.00062108738
TVOL273116 ncbi Thermoplasma volcanium GSS1 0.00074313056
MAVI243243 ncbi Mycobacterium avium 104 0.00112479408
WPIP80849 Wolbachia endosymbiont of Brugia malayi 0.00125223336
ECAN269484 ncbi Ehrlichia canis Jake 0.00186043566
MBAR269797 ncbi Methanosarcina barkeri Fusaro 0.00222566267
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 2661 0.00237513716
WPIP955 Wolbachia pipientis 0.00286703836
RTYP257363 ncbi Rickettsia typhi Wilmington 0.00309533886
RPRO272947 ncbi Rickettsia prowazekii Madrid E 0.00314273896
MTHE349307 ncbi Methanosaeta thermophila PT 0.00365093996
RCAN293613 ncbi Rickettsia canadensis McKiel 0.00398704056
RBEL391896 ncbi Rickettsia bellii OSU 85-389 0.00876614636


Names of the homologs of the genes in the group in each of these orgs
  G7306   G7304   G7303   EG10480   EG10479   EG10478   EG10477   EG10476   
SMAR399550 SMAR_0018SMAR_1061SMAR_0645SMAR_0018SMAR_1062SMAR_1061SMAR_1060SMAR_0028
TPEN368408 TPEN_0181TPEN_0183TPEN_0185TPEN_0181TPEN_0182TPEN_0183TPEN_0187TPEN_0188
MLAB410358 MLAB_1622MLAB_0959MLAB_0955MLAB_0957MLAB_1619MLAB_0959MLAB_0960MLAB_0955
PHOR70601 PH1434PH1437PH1452PH1434PH1440PH1437PH1439PH1431
PABY272844 PAB1890PAB1394PAB1888PAB1396PAB1395PAB1394PAB1393PAB1392
PFUR186497 PF1432PF1434PF1430PF1432PF1436PF1434PF1435PF1430
TKOD69014 TK2089TK2091TK1220TK2089TK2078TK2091TK2092TK2087
MHUN323259 MHUN_2588MHUN_2590MHUN_1819MHUN_2588MHUN_1746MHUN_1745MHUN_1821MHUN_1822
UMET351160 RCIX2382RCIX2383RCIX2384RCIX2382RCIX2382RCIX2383RCIX2386RCIX2387
DETH243164 DET_0862DET_1571DET_1572DET_0862DET_0928DET_0867DET_1574DET_1575
APHA212042 APH_0520APH_0732APH_0044APH_0520APH_0801APH_0732APH_0711
DSP216389 DEHABAV1_0780DEHABAV1_1317DEHABAV1_1318DEHABAV1_0780DEHABAV1_0812DEHABAV1_0785DEHABAV1_1320DEHABAV1_1321
DSP255470 CBDBA844CBDBA1653CBDBA1655CBDBA844CBDBA880CBDBA850CBDBA1658CBDBA1659
MMAZ192952 MM2322MM2324MM1062MM2322MM2486MM1063MM1060MM1059
MAEO419665 MAEO_0938MAEO_0306MAEO_0940MAEO_0938MAEO_0371MAEO_0942MAEO_0943
MACE188937 MA4373MA4372MA4371MA4373MA1500MA4372MA4369MA4368
CMET456442 MBOO_0026MBOO_1123MBOO_1124MBOO_0026MBOO_1123MBOO_1126MBOO_1127
CFET360106 CFF8240_0125CFF8240_0127CFF8240_0128CFF8240_0125CFF8240_0126CFF8240_0127CFF8240_0131CFF8240_0132
CCON360104 CCC13826_0713CCC13826_0711CCC13826_1911CCC13826_0713CCC13826_0712CCC13826_0711CCC13826_1913CCC13826_1914
CCUR360105 CCV52592_1637CCV52592_1635CCV52592_1038CCV52592_1637CCV52592_1636CCV52592_1635CCV52592_1790CCV52592_1791
NSEN222891 NSE_0431NSE_0566NSE_0431NSE_0820NSE_0566NSE_0054
MBUR259564 MBUR_1296MBUR_1294MBUR_0135MBUR_1292MBUR_1294MBUR_1293MBUR_0135
NSP387092 NIS_0714NIS_0715NIS_0716NIS_0714NIS_0297NIS_0715NIS_0718NIS_0719
MTBCDC MT0089MT3236MT0093MT0089MT3241MT3236MT0091MT0090
MTBRV RV0082RV0087RV0086RV0082RV3153RV0087RV0084RV0083
MBOV233413 MB0085MB0090MB0089MB0085MB3177MB0090MB0087MB0086
ACEL351607 ACEL_0727ACEL_0270ACEL_0729ACEL_0727ACEL_0275ACEL_0270ACEL_0731ACEL_0726
MTUB336982 TBFG_10083TBFG_10088TBFG_10087TBFG_10083TBFG_13174TBFG_10088TBFG_10085TBFG_10084
SSP387093 SUN_0264SUN_0263SUN_0259SUN_0845SUN_2223SUN_0846SUN_0260SUN_0259
MBOV410289 BCG_0115BCG_0120BCG_0119BCG_0115BCG_3176BCG_0120BCG_0117BCG_0116
MTUB419947 MRA_0086MRA_0091MRA_0090MRA_0086MRA_3186MRA_0091MRA_0088MRA_0087
WSUC273121 WS1836WS1838WS1839WS1836WS1837WS1838WS1841WS1842
TVOL273116 TVN1115TVN1455TVN1111TVN1113TVN1453TVN1106
MAVI243243 MAV_5114MAV_5109MAV_5110MAV_5114MAV_4041MAV_5109MAV_5112MAV_5113
WPIP80849 WB_0377WB_0208WB_0024WB_0377WB_0712WB_0208
ECAN269484 ECAJ_0288ECAJ_0426ECAJ_0121ECAJ_0288ECAJ_0361ECAJ_0422
MBAR269797 MBAR_A2455MBAR_A0148MBAR_A2455MBAR_A3407MBAR_A0148MBAR_A0151MBAR_A3402
MJAN243232 MJ_0516MJ_1027MJ_0516MJ_0514.1MJ_1027MJ_1309
WPIP955 WD_1123WD_0560WD_1107WD_1123WD_0980WD_0560
RTYP257363 RT0345RT0343RT0345RT0782RT0343RT0783
RPRO272947 RP356RP354RP356RP795RP354RP796
MTHE349307 MTHE_1051MTHE_1052MTHE_1058MTHE_1051MTHE_1054MTHE_1052
RCAN293613 A1E_03675A1E_03690A1E_03675A1E_05070A1E_03690A1E_05080
RBEL391896 A1I_05775A1I_05790A1I_05775A1I_07420A1I_05790A1I_07425


Organism features enriched in list (features available for 42 out of the 44 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Aggregates 0.002105749
Disease:Epidemic_typhus 0.005075122
Disease:Tuberculosis 0.000349433
Endospores:No 0.000276026211
GC_Content_Range7:40-50 0.002596916117
Genome_Size_Range5:0-2 0.000040023155
Genome_Size_Range9:1-2 5.164e-622128
Gram_Stain:Gram_Neg 0.000019911333
Habitat:Multiple 0.00718796178
Oxygen_Req:Anaerobic 2.047e-620102
Oxygen_Req:Facultative 2.522e-62201
Shape:Irregular_coccus 1.651e-81017
Shape:Rod 0.000244714347
Temp._range:Hyperthermophilic 0.0005462723
Temp._range:Mesophilic 0.000430425473



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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
PWY0-1315 (L-lactaldehyde degradation (anaerobic))45370.4213
GALACTITOLCAT-PWY (galactitol degradation)73490.4147



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G7304   G7303   EG10480   EG10479   EG10478   EG10477   EG10476   
G73060.9997550.9996170.999980.9996950.9997520.9997630.999491
G73040.9996120.999730.999750.9999740.9998260.999548
G73030.9995990.9994920.9995840.9997150.999839
EG104800.9996650.9997290.9997350.999488
EG104790.9997910.9998750.999317
EG104780.9998330.999532
EG104770.999726
EG10476



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PAIRWISE BLAST SCORES:

  G7306   G7304   G7303   EG10480   EG10479   EG10478   EG10477   EG10476   
G73060.0f0--1.2e-72----
G7304-0.0f0---0--
G7303--0.0f0-----
EG104802.0e-77--0.0f0----
EG10479----0.0f0---
EG10478-0---0.0f0--
EG10477------0.0f0-
EG10476--2.9e-13----0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- HYDROG3-CPLX (hydrogenase 3) (degree of match pw to cand: 0.833, degree of match cand to pw: 0.625, average score: 0.999)
  Genes in pathway or complex:
   *in cand* 0.9998 0.9995 EG10478 (hycE) HYCELARGE-MONOMER (hydrogenase 3, large subunit)
             0.9982 0.9967 EG10475 (hycB) HYCBSMALL-MONOMER (hydrogenase 3, Fe-S subunit)
   *in cand* 0.9997 0.9995 EG10480 (hycG) HYCG-MONOMER (hydrogenase 3 and formate hydrogenlyase complex, HycG subunit)
   *in cand* 0.9997 0.9993 EG10479 (hycF) HYCF-MONOMER (formate hydrogenlyase complex iron-sulfur protein)
   *in cand* 0.9996 0.9993 EG10476 (hycC) HYCC-MONOMER (hydrogenase 3, membrane subunit)
   *in cand* 0.9998 0.9997 EG10477 (hycD) HYCD-MONOMER (hydrogenase 3, membrane subunit)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9997 0.9995 G7303 (hyfF) MONOMER0-143 (hydrogenase 4, component F)
   *in cand* 0.9998 0.9995 G7304 (hyfG) MONOMER0-150 (hydrogenase 4, large subunit)
   *in cand* 0.9998 0.9995 G7306 (hyfI) MONOMER0-151 (hydrogenase 4, small subunit)

- FERMENTATION-PWY (mixed acid fermentation) (degree of match pw to cand: 0.179, degree of match cand to pw: 0.625, average score: 0.597)
  Genes in pathway or complex:
             0.8887 0.7866 EG20173 (pta) PHOSACETYLTRANS-MONOMER (Pta)
             0.9227 0.8576 EG10027 (ackA) ACETATEKINA-MONOMER (propionate kinase / acetate kinase)
             0.3007 0.1507 G7627 (tdcE) KETOBUTFORMLY-MONOMER (2-ketobutyrate formate-lyase / pyruvate formate-lyase 4)
             0.3279 0.1785 EG10701 (pflB) PYRUVFORMLY-MONOMER (PflB)
             0.4093 0.1906 G6775 (adhP) ADHP-MONOMER (ethanol dehydrogenase)
             0.6015 0.4845 EG10031 (adhE) ADHE-MONOMER (AdhE)
             0.3746 0.0920 EG10803 (pykA) PKII-MONOMER (pyruvate kinase II monomer)
             0.4288 0.2365 EG10804 (pykF) PKI-MONOMER (pyruvate kinase I monomer)
             0.7815 0.5960 G592 (ldhA) DLACTDEHYDROGNAD-MONOMER (D-lactate dehydrogenase)
             0.5874 0.3326 EG10358 (fumC) FUMC-MONOMER (fumarase C monomer)
             0.8272 0.6039 EG10357 (fumB) FUMB-MONOMER (fumarase B monomer)
             0.8533 0.6308 EG10356 (fumA) FUMA-MONOMER (fumarase A monomer)
             0.6700 0.2920 EG10576 (mdh) MALATE-DEHASE-MONOMER (Mdh)
             0.2328 0.1114 EG10756 (ppc) PEPCARBOX-MONOMER (Ppc)
   *in cand* 0.9998 0.9997 EG10477 (hycD) HYCD-MONOMER (hydrogenase 3, membrane subunit)
   *in cand* 0.9996 0.9993 EG10476 (hycC) HYCC-MONOMER (hydrogenase 3, membrane subunit)
   *in cand* 0.9997 0.9993 EG10479 (hycF) HYCF-MONOMER (formate hydrogenlyase complex iron-sulfur protein)
   *in cand* 0.9997 0.9995 EG10480 (hycG) HYCG-MONOMER (hydrogenase 3 and formate hydrogenlyase complex, HycG subunit)
             0.9982 0.9967 EG10475 (hycB) HYCBSMALL-MONOMER (hydrogenase 3, Fe-S subunit)
   *in cand* 0.9998 0.9995 EG10478 (hycE) HYCELARGE-MONOMER (hydrogenase 3, large subunit)
                NIL    NIL EG10285 (fdhF) FORMATEDEHYDROGH-MONOMER (formate dehydrogenase H)
             0.1776 0.0851 EG10333 (frdD) FUM-MEMB2 (fumarate reductase membrane protein)
             0.0978 0.0754 EG10332 (frdC) FUM-MEMB1 (fumarate reductase membrane protein)
             0.5653 0.3760 EG10331 (frdB) FUM-FE-S (fumarate reductase iron-sulfur protein)
             0.4152 0.2116 EG10330 (frdA) FUM-FLAVO (fumarate reductase flavoprotein)
             0.8293 0.2772 EG10402 (gltA) CITSYN-MONOMER (citrate synthase monomer)
             0.3732 0.0593 EG12316 (acnB) ACONITATEDEHYDRB-MONOMER (bifunctional aconitate hydratase 2 and 2-methylisocitrate dehydratase)
             0.5197 0.0780 EG10489 (icd) ISOCITDEH-SUBUNIT (Icd)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9997 0.9995 G7303 (hyfF) MONOMER0-143 (hydrogenase 4, component F)
   *in cand* 0.9998 0.9995 G7304 (hyfG) MONOMER0-150 (hydrogenase 4, large subunit)
   *in cand* 0.9998 0.9995 G7306 (hyfI) MONOMER0-151 (hydrogenase 4, small subunit)

- FHLMULTI-CPLX (formate hydrogenlyase complex) (degree of match pw to cand: 0.714, degree of match cand to pw: 0.625, average score: 0.999)
  Genes in pathway or complex:
   *in cand* 0.9998 0.9997 EG10477 (hycD) HYCD-MONOMER (hydrogenase 3, membrane subunit)
   *in cand* 0.9996 0.9993 EG10476 (hycC) HYCC-MONOMER (hydrogenase 3, membrane subunit)
   *in cand* 0.9997 0.9993 EG10479 (hycF) HYCF-MONOMER (formate hydrogenlyase complex iron-sulfur protein)
   *in cand* 0.9997 0.9995 EG10480 (hycG) HYCG-MONOMER (hydrogenase 3 and formate hydrogenlyase complex, HycG subunit)
             0.9982 0.9967 EG10475 (hycB) HYCBSMALL-MONOMER (hydrogenase 3, Fe-S subunit)
   *in cand* 0.9998 0.9995 EG10478 (hycE) HYCELARGE-MONOMER (hydrogenase 3, large subunit)
                NIL    NIL EG10285 (fdhF) FORMATEDEHYDROGH-MONOMER (formate dehydrogenase H)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9997 0.9995 G7303 (hyfF) MONOMER0-143 (hydrogenase 4, component F)
   *in cand* 0.9998 0.9995 G7304 (hyfG) MONOMER0-150 (hydrogenase 4, large subunit)
   *in cand* 0.9998 0.9995 G7306 (hyfI) MONOMER0-151 (hydrogenase 4, small subunit)

- ANARESP1-PWY (respiration (anaerobic)) (degree of match pw to cand: 0.185, degree of match cand to pw: 0.625, average score: 0.592)
  Genes in pathway or complex:
             0.3746 0.0920 EG10803 (pykA) PKII-MONOMER (pyruvate kinase II monomer)
             0.4288 0.2365 EG10804 (pykF) PKI-MONOMER (pyruvate kinase I monomer)
             0.3706 0.0786 EG10543 (lpd) E3-MONOMER (E3 monomer)
             0.1664 0.0515 EG10025 (aceF) ACEF-LIPOATE (AceF-lipoate)
             0.2927 0.1238 EG10024 (aceE) E1P-MONOMER (subunit of E1p component of pyruvate dehydrogenase complex)
             0.8293 0.2772 EG10402 (gltA) CITSYN-MONOMER (citrate synthase monomer)
             0.3732 0.0593 EG12316 (acnB) ACONITATEDEHYDRB-MONOMER (bifunctional aconitate hydratase 2 and 2-methylisocitrate dehydratase)
             0.5197 0.0780 EG10489 (icd) ISOCITDEH-SUBUNIT (Icd)
             0.2328 0.1114 EG10756 (ppc) PEPCARBOX-MONOMER (Ppc)
             0.6700 0.2920 EG10576 (mdh) MALATE-DEHASE-MONOMER (Mdh)
             0.5874 0.3326 EG10358 (fumC) FUMC-MONOMER (fumarase C monomer)
             0.8272 0.6039 EG10357 (fumB) FUMB-MONOMER (fumarase B monomer)
             0.8533 0.6308 EG10356 (fumA) FUMA-MONOMER (fumarase A monomer)
             0.3007 0.1507 G7627 (tdcE) KETOBUTFORMLY-MONOMER (2-ketobutyrate formate-lyase / pyruvate formate-lyase 4)
             0.3279 0.1785 EG10701 (pflB) PYRUVFORMLY-MONOMER (PflB)
             0.9300 0.8526 EG10258 (eno) ENOLASE-MONOMER (Eno)
   *in cand* 0.9998 0.9997 EG10477 (hycD) HYCD-MONOMER (hydrogenase 3, membrane subunit)
   *in cand* 0.9996 0.9993 EG10476 (hycC) HYCC-MONOMER (hydrogenase 3, membrane subunit)
   *in cand* 0.9997 0.9993 EG10479 (hycF) HYCF-MONOMER (formate hydrogenlyase complex iron-sulfur protein)
   *in cand* 0.9997 0.9995 EG10480 (hycG) HYCG-MONOMER (hydrogenase 3 and formate hydrogenlyase complex, HycG subunit)
             0.9982 0.9967 EG10475 (hycB) HYCBSMALL-MONOMER (hydrogenase 3, Fe-S subunit)
   *in cand* 0.9998 0.9995 EG10478 (hycE) HYCELARGE-MONOMER (hydrogenase 3, large subunit)
                NIL    NIL EG10285 (fdhF) FORMATEDEHYDROGH-MONOMER (formate dehydrogenase H)
             0.1776 0.0851 EG10333 (frdD) FUM-MEMB2 (fumarate reductase membrane protein)
             0.0978 0.0754 EG10332 (frdC) FUM-MEMB1 (fumarate reductase membrane protein)
             0.5653 0.3760 EG10331 (frdB) FUM-FE-S (fumarate reductase iron-sulfur protein)
             0.4152 0.2116 EG10330 (frdA) FUM-FLAVO (fumarate reductase flavoprotein)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9997 0.9995 G7303 (hyfF) MONOMER0-143 (hydrogenase 4, component F)
   *in cand* 0.9998 0.9995 G7304 (hyfG) MONOMER0-150 (hydrogenase 4, large subunit)
   *in cand* 0.9998 0.9995 G7306 (hyfI) MONOMER0-151 (hydrogenase 4, small subunit)

- CPLX0-250 (hydrogenase 4) (degree of match pw to cand: 0.333, degree of match cand to pw: 0.375, average score: 0.999)
  Genes in pathway or complex:
             0.9995 0.9990 G7305 (hyfH) MONOMER0-144 (hydrogenase 4, component H)
   *in cand* 0.9997 0.9995 G7303 (hyfF) MONOMER0-143 (hydrogenase 4, component F)
             0.9992 0.9982 G7302 (hyfE) MONOMER0-142 (hydrogenase 4, component E)
             0.9994 0.9987 G7301 (hyfD) MONOMER0-141 (hydrogenase 4, component D)
             0.9996 0.9993 G7300 (hyfC) MONOMER0-154 (hydrogenase 4, component C)
             0.9996 0.9993 EG11282 (hyfB) MONOMER0-153 (hydrogenase 4, component B)
             0.9982 0.9976 EG11150 (hyfA) MONOMER0-152 (hydrogenase 4, component A)
   *in cand* 0.9998 0.9995 G7306 (hyfI) MONOMER0-151 (hydrogenase 4, small subunit)
   *in cand* 0.9998 0.9995 G7304 (hyfG) MONOMER0-150 (hydrogenase 4, large subunit)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9996 0.9993 EG10476 (hycC) HYCC-MONOMER (hydrogenase 3, membrane subunit)
   *in cand* 0.9998 0.9997 EG10477 (hycD) HYCD-MONOMER (hydrogenase 3, membrane subunit)
   *in cand* 0.9998 0.9995 EG10478 (hycE) HYCELARGE-MONOMER (hydrogenase 3, large subunit)
   *in cand* 0.9997 0.9993 EG10479 (hycF) HYCF-MONOMER (formate hydrogenlyase complex iron-sulfur protein)
   *in cand* 0.9997 0.9995 EG10480 (hycG) HYCG-MONOMER (hydrogenase 3 and formate hydrogenlyase complex, HycG subunit)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

G7303 G7304 G7306 (centered at G7304)
EG10476 EG10477 EG10478 EG10479 EG10480 (centered at EG10478)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7306   G7304   G7303   EG10480   EG10479   EG10478   EG10477   EG10476   
314/623275/623290/623290/623333/623281/623299/623262/623
AAEO224324:0:Tyes01590-153-
AAVE397945:0:Tyes0---7-6-
ABAC204669:0:Tyes-224969022-3
ABAU360910:0:Tyes0-100---956
ABOR393595:0:Tyes--0----0
ABUT367737:0:Tyes-6--06--
ACAU438753:0:Tyes27132714271527130271427172718
ACEL351607:0:Tyes456045845650460455
ACRY349163:8:Tyes2892882872890288285284
ADEH290397:0:Tyes54355410
AEHR187272:0:Tyes6--6--0130
AFER243159:0:Tyes4504514524500451454455
AHYD196024:0:Tyes42043210
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