CANDIDATE ID: 81

CANDIDATE ID: 81

NUMBER OF GENES: 8
AVERAGE SCORE:    9.9968664e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7348 (rseB) (b2571)
   Products of gene:
     - G7348-MONOMER (rseB)
     - CPLX0-7648 (anti-sigma factor)

- EG11897 (rpoE) (b2573)
   Products of gene:
     - RPOE-MONOMER (RNA polymerase, sigma 24 (sigma E) factor)
     - RNAPE-CPLX (RNA polymerase sigma 24)

- EG10857 (rnc) (b2567)
   Products of gene:
     - EG10857-MONOMER (RNase III)
     - CPLX0-3281 (RNase III)
       Reactions:
        RNase III mRNA processing substrate  ->  RNase III processing product mRNA + 2 a single-stranded RNA

- EG10832 (recO) (b2565)
   Products of gene:
     - EG10832-MONOMER (protein interacts with RecR and possibly RecF proteins)
     - RECFOR-CPLX (RecFOR complex)
       Reactions:
        an unstable RecA filament-DNA complex  =  a stabilized RecA filament-DNA complex

- EG10693 (pdxJ) (b2564)
   Products of gene:
     - PDXJ-MONOMER (PdxJ)
     - CPLX0-321 (pyridoxine 5'-phosphate synthase)
       Reactions:
        3-amino-1-hydroxyacetone-1-phosphate + 1-deoxy-D-xylulose 5-phosphate  ->  pyridoxine-5'-phosphate + phosphate + 2 H2O + H+
         In pathways
         PWY0-845 (superpathway of pyridoxal 5'-phosphate biosynthesis and salvage)
         PYRIDOXSYN-PWY (pyridoxal 5'-phosphate biosynthesis I)

- EG10530 (lepB) (b2568)
   Products of gene:
     - EG10530-MONOMER (leader peptidase (signal peptidase I))
       Reactions:
        a peptide with a leader sequence  ->  a peptide + a leader sequence

- EG10529 (lepA) (b2569)
   Products of gene:
     - EG10529-MONOMER (elongation factor 4)

- EG10270 (era) (b2566)
   Products of gene:
     - EG10270-MONOMER (GTP-binding protein)



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ORGANISMS CONTAINING AT LEAST 7 GENES FROM THE GROUP:

Total number of orgs: 157
Effective number of orgs (counting one per cluster within 468 clusters): 98

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317588
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329538
YPES386656 ncbi Yersinia pestis Pestoides F8
YPES377628 ncbi Yersinia pestis Nepal5168
YPES360102 ncbi Yersinia pestis Antiqua8
YPES349746 ncbi Yersinia pestis Angola8
YPES214092 ncbi Yersinia pestis CO928
YPES187410 ncbi Yersinia pestis KIM 108
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80818
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A7
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110187
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103317
XFAS405440 ncbi Xylella fastidiosa M127
XFAS183190 ncbi Xylella fastidiosa Temecula17
XFAS160492 ncbi Xylella fastidiosa 9a5c7
XCAM487884 Xanthomonas campestris pv. paulliniae7
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-107
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80047
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339137
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3067
VVUL216895 ncbi Vibrio vulnificus CMCP68
VVUL196600 ncbi Vibrio vulnificus YJ0168
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106338
VFIS312309 ncbi Vibrio fischeri ES1148
VEIS391735 ncbi Verminephrobacter eiseniae EF01-27
VCHO345073 ncbi Vibrio cholerae O3958
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169618
TTUR377629 ncbi Teredinibacter turnerae T79018
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252598
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT28
SSP94122 ncbi Shewanella sp. ANA-38
SSON300269 ncbi Shigella sonnei Ss0468
SSED425104 ncbi Shewanella sediminis HAW-EB38
SPRO399741 ncbi Serratia proteamaculans 5688
SPEA398579 ncbi Shewanella pealeana ATCC 7003458
SONE211586 ncbi Shewanella oneidensis MR-18
SLOI323850 ncbi Shewanella loihica PV-48
SHIGELLA ncbi Shigella flexneri 2a str. 2457T8
SHAL458817 ncbi Shewanella halifaxensis HAW-EB48
SGLO343509 ncbi Sodalis glossinidius morsitans8
SFLE373384 ncbi Shigella flexneri 5 str. 84018
SFLE198214 ncbi Shigella flexneri 2a str. 3018
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4768
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B678
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91508
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT188
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty28
SDYS300267 ncbi Shigella dysenteriae Sd1978
SDEN318161 ncbi Shewanella denitrificans OS2178
SDEG203122 ncbi Saccharophagus degradans 2-408
SBOY300268 ncbi Shigella boydii Sb2278
SBAL402882 ncbi Shewanella baltica OS1858
SBAL399599 ncbi Shewanella baltica OS1958
RSOL267608 ncbi Ralstonia solanacearum GMI10008
RMET266264 ncbi Ralstonia metallidurans CH348
RFER338969 ncbi Rhodoferax ferrireducens T1188
REUT381666 ncbi Ralstonia eutropha H168
REUT264198 ncbi Ralstonia eutropha JMP1348
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30008
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a8
PSTU379731 ncbi Pseudomonas stutzeri A15018
PSP296591 ncbi Polaromonas sp. JS6668
PPUT76869 ncbi Pseudomonas putida GB-18
PPUT351746 ncbi Pseudomonas putida F18
PPUT160488 ncbi Pseudomonas putida KT24408
PPRO298386 ncbi Photobacterium profundum SS98
PNAP365044 ncbi Polaromonas naphthalenivorans CJ28
PMUL272843 ncbi Pasteurella multocida multocida Pm707
PMEN399739 ncbi Pseudomonas mendocina ymp8
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO18
PING357804 ncbi Psychromonas ingrahamii 378
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1258
PFLU220664 ncbi Pseudomonas fluorescens Pf-58
PFLU216595 ncbi Pseudomonas fluorescens SBW258
PFLU205922 ncbi Pseudomonas fluorescens Pf0-18
PENT384676 ncbi Pseudomonas entomophila L488
PCAR338963 ncbi Pelobacter carbinolicus DSM 23807
PATL342610 ncbi Pseudoalteromonas atlantica T6c8
PAER208964 ncbi Pseudomonas aeruginosa PAO18
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA148
NOCE323261 ncbi Nitrosococcus oceani ATCC 197078
NMUL323848 ncbi Nitrosospira multiformis ATCC 251968
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E7
MSP400668 ncbi Marinomonas sp. MWYL18
MPET420662 ncbi Methylibium petroleiphilum PM18
MFLA265072 ncbi Methylobacillus flagellatus KT8
MCAP243233 ncbi Methylococcus capsulatus Bath8
MAQU351348 ncbi Marinobacter aquaeolei VT88
LPNE400673 ncbi Legionella pneumophila Corby7
LPNE297246 ncbi Legionella pneumophila Paris7
LPNE297245 ncbi Legionella pneumophila Lens7
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 17
LCHO395495 ncbi Leptothrix cholodnii SP-68
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785788
JSP375286 ncbi Janthinobacterium sp. Marseille8
ILOI283942 ncbi Idiomarina loihiensis L2TR8
HSOM228400 ncbi Haemophilus somnus 23367
HSOM205914 ncbi Haemophilus somnus 129PT7
HINF71421 ncbi Haemophilus influenzae Rd KW207
HINF281310 ncbi Haemophilus influenzae 86-028NP7
HHAL349124 ncbi Halorhodospira halophila SL18
HCHE349521 ncbi Hahella chejuensis KCTC 23968
HARS204773 ncbi Herminiimonas arsenicoxydans8
ESP42895 Enterobacter sp.8
EFER585054 ncbi Escherichia fergusonii ATCC 354698
ECOO157 ncbi Escherichia coli O157:H7 EDL9338
ECOL83334 Escherichia coli O157:H78
ECOL585397 ncbi Escherichia coli ED1a8
ECOL585057 ncbi Escherichia coli IAI398
ECOL585056 ncbi Escherichia coli UMN0268
ECOL585055 ncbi Escherichia coli 559898
ECOL585035 ncbi Escherichia coli S888
ECOL585034 ncbi Escherichia coli IAI18
ECOL481805 ncbi Escherichia coli ATCC 87398
ECOL469008 ncbi Escherichia coli BL21(DE3)8
ECOL439855 ncbi Escherichia coli SMS-3-58
ECOL413997 ncbi Escherichia coli B str. REL6068
ECOL409438 ncbi Escherichia coli SE118
ECOL405955 ncbi Escherichia coli APEC O18
ECOL364106 ncbi Escherichia coli UTI898
ECOL362663 ncbi Escherichia coli 5368
ECOL331111 ncbi Escherichia coli E24377A8
ECOL316407 ncbi Escherichia coli K-12 substr. W31108
ECOL199310 ncbi Escherichia coli CFT0738
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10438
DARO159087 ncbi Dechloromonas aromatica RCB7
CVIO243365 ncbi Chromobacterium violaceum ATCC 124728
CSAL290398 ncbi Chromohalobacter salexigens DSM 30437
CPSY167879 ncbi Colwellia psychrerythraea 34H8
CJAP155077 Cellvibrio japonicus8
BVIE269482 ncbi Burkholderia vietnamiensis G48
BTHA271848 ncbi Burkholderia thailandensis E2648
BSP36773 Burkholderia sp.8
BPSE320373 ncbi Burkholderia pseudomallei 6687
BPSE320372 ncbi Burkholderia pseudomallei 1710b8
BPSE272560 ncbi Burkholderia pseudomallei K962438
BPET94624 Bordetella petrii8
BPER257313 ncbi Bordetella pertussis Tohama I8
BPAR257311 ncbi Bordetella parapertussis 128228
BMAL320389 ncbi Burkholderia mallei NCTC 102478
BMAL320388 ncbi Burkholderia mallei SAVP18
BMAL243160 ncbi Burkholderia mallei ATCC 233448
BCEN331272 ncbi Burkholderia cenocepacia HI24248
BCEN331271 ncbi Burkholderia cenocepacia AU 10548
BBRO257310 ncbi Bordetella bronchiseptica RB508
BAMB398577 ncbi Burkholderia ambifaria MC40-68
BAMB339670 ncbi Burkholderia ambifaria AMMD8
ASP76114 ncbi Aromatoleum aromaticum EbN18
ASP62928 ncbi Azoarcus sp. BH728
ASP232721 ncbi Acidovorax sp. JS428
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4498
AHYD196024 Aeromonas hydrophila dhakensis8
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232707
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-18
ABOR393595 ncbi Alcanivorax borkumensis SK28
ABAU360910 ncbi Bordetella avium 197N8
AAVE397945 ncbi Acidovorax citrulli AAC00-18


Names of the homologs of the genes in the group in each of these orgs
  G7348   EG11897   EG10857   EG10832   EG10693   EG10530   EG10529   EG10270   
YPSE349747 YPSIP31758_1131YPSIP31758_1129YPSIP31758_1136YPSIP31758_1138YPSIP31758_1139YPSIP31758_1135YPSIP31758_1134YPSIP31758_1137
YPSE273123 YPTB2895YPTB2897YPTB2890YPTB2888YPTB2887YPTB2891YPTB2892YPTB2889
YPES386656 YPDSF_1558YPDSF_1560YPDSF_1553YPDSF_1551YPDSF_1550YPDSF_1554YPDSF_1555YPDSF_1552
YPES377628 YPN_1201YPN_1199YPN_1206YPN_1208YPN_1209YPN_1205YPN_1204YPN_1207
YPES360102 YPA_2447YPA_2445YPA_2452YPA_2454YPA_2369YPA_2451YPA_2450YPA_2453
YPES349746 YPANGOLA_A3606YPANGOLA_A3604YPANGOLA_A3611YPANGOLA_A3613YPANGOLA_A3614YPANGOLA_A3610YPANGOLA_A3609YPANGOLA_A3612
YPES214092 YPO2713YPO2711YPO2718YPO2720YPO2930YPO2717YPO2716YPO2719
YPES187410 Y1292Y1290Y1297Y1299Y1300Y1296Y1295Y1298
YENT393305 YE1012YE1010YE1017YE1019YE1020YE1016YE1015YE1018
XORY360094 XOOORF_3153XOOORF_3147XOOORF_3145XOOORF_0012XOOORF_3149XOOORF_3150XOOORF_3146
XORY342109 XOO1745XOO1751XOO1753XOO0012XOO1749XOO1748XOO1752
XORY291331 XOO1849XOO1855XOO1857XOO0012XOO1853XOO1852XOO1856
XFAS405440 XFASM12_1438XFASM12_1444XFASM12_1446XFASM12_0046XFASM12_1442XFASM12_1441XFASM12_1445
XFAS183190 PD_1284PD_1290PD_1292PD_0040PD_1288PD_1287PD_1291
XFAS160492 XF2239XF2246XF2248XF0060XF2244XF2243XF2247
XCAM487884 XCC-B100_3036XCC-B100_3030XCC-B100_3028XCC-B100_0014XCC-B100_3032XCC-B100_3033XCC-B100_3029
XCAM316273 XCAORF_1521XCAORF_1527XCAORF_1529XCAORF_0013XCAORF_1525XCAORF_1524XCAORF_1528
XCAM314565 XC_2974XC_2968XC_2966XC_0012XC_2970XC_2971XC_2967
XCAM190485 XCC1267XCC1273XCC1275XCC0012XCC1271XCC1270XCC1274
XAXO190486 XAC1319XAC1325XAC1327XAC0012XAC1323XAC1322XAC1326
VVUL216895 VV1_1561VV1_1559VV1_1565VV1_1567VV1_1568VV1_1564VV1_1563VV1_1566
VVUL196600 VV2836VV2838VV2831VV2829VV2828VV2832VV2833VV2830
VPAR223926 VP2576VP2578VP2572VP2570VP2569VP2573VP2574VP2571
VFIS312309 VF2091VF2093VF2087VF2085VF2084VF2088VF2089VF2086
VEIS391735 VEIS_3244VEIS_3246VEIS_2343VEIS_2344VEIS_3240VEIS_3241VEIS_3237
VCHO345073 VC0395_A2043VC0395_A2045VC0395_A2039VC0395_A2037VC0395_A2036VC0395_A2040VC0395_A2041VC0395_A2038
VCHO VC2465VC2467VC2461VC2459VC2458VC2462VC2463VC2460
TTUR377629 TERTU_1182TERTU_1180TERTU_1188TERTU_1190TERTU_2478TERTU_1186TERTU_1185TERTU_1189
TDEN292415 TBD_2093TBD_2095TBD_2086TBD_2084TBD_2083TBD_2088TBD_2089TBD_2085
STYP99287 STM2638STM2640STM2581STM2579STM2578STM2582STM2583STM2580
SSP94122 SHEWANA3_3030SHEWANA3_3032SHEWANA3_3026SHEWANA3_3024SHEWANA3_3023SHEWANA3_3027SHEWANA3_3028SHEWANA3_3025
SSON300269 SSO_2695SSO_2697SSO_2691SSO_2689SSO_2688SSO_2692SSO_2693SSO_2690
SSED425104 SSED_1144SSED_1142SSED_1148SSED_1150SSED_1151SSED_1147SSED_1146SSED_1149
SPRO399741 SPRO_3674SPRO_3676SPRO_3669SPRO_3667SPRO_3666SPRO_3670SPRO_3671SPRO_3668
SPEA398579 SPEA_1033SPEA_1031SPEA_1037SPEA_1039SPEA_1040SPEA_1036SPEA_1035SPEA_1038
SONE211586 SO_1344SO_1342SO_1348SO_1350SO_1351SO_1347SO_1346SO_1349
SLOI323850 SHEW_1050SHEW_1048SHEW_1054SHEW_1056SHEW_1057SHEW_1053SHEW_1052SHEW_1055
SHIGELLA RSEBRPOERNCRECOPDXJLEPBLEPAERA
SHAL458817 SHAL_1079SHAL_1077SHAL_1083SHAL_1085SHAL_1086SHAL_1082SHAL_1081SHAL_1084
SGLO343509 SG1791SG1793SG1787SG1785SG1784SG1788SG1789SG1786
SFLE373384 SFV_2634SFV_2636SFV_2630SFV_2628SFV_2627SFV_2631SFV_2632SFV_2629
SFLE198214 AAN44130.1AAN44132.1AAN44126.1AAN44124.1AAN44123.1AAN44127.1AAN44128.1AAN44125.1
SENT454169 SEHA_C2852SEHA_C2854SEHA_C2847SEHA_C2845SEHA_C2844SEHA_C2849SEHA_C2850SEHA_C2846
SENT321314 SCH_2643SCH_2645SCH_2576SCH_2574SCH_2573SCH_2577SCH_2578SCH_2575
SENT295319 SPA0280SPA0278SPA0284SPA0286SPA0287SPA0283SPA0282SPA0285
SENT220341 STY2831STY2833STY2827STY2825STY2824STY2828STY2829STY2826
SENT209261 T0272T0270T0277T0278T0279T0275T0274T0276
SDYS300267 SDY_2812SDY_2814SDY_2808SDY_2806SDY_2805SDY_2809SDY_2810SDY_2807
SDEN318161 SDEN_2770SDEN_2772SDEN_2766SDEN_2764SDEN_2763SDEN_2767SDEN_2768SDEN_2765
SDEG203122 SDE_2249SDE_2251SDE_2243SDE_2241SDE_1713SDE_2245SDE_2246SDE_2242
SBOY300268 SBO_2599SBO_2601SBO_2595SBO_2593SBO_2592SBO_2596SBO_2597SBO_2594
SBAL402882 SHEW185_1241SHEW185_1239SHEW185_1245SHEW185_1247SHEW185_1248SHEW185_1244SHEW185_1243SHEW185_1246
SBAL399599 SBAL195_1274SBAL195_1272SBAL195_1278SBAL195_1280SBAL195_1281SBAL195_1277SBAL195_1276SBAL195_1279
RSOL267608 RSC1057RSC1055RSC1063RSC1065RSC1066RSC1061RSC1060RSC1064
RMET266264 RMET_2423RMET_2425RMET_2418RMET_2416RMET_2415RMET_2420RMET_2421RMET_2417
RFER338969 RFER_1738RFER_1736RFER_1743RFER_1751RFER_1752RFER_1741RFER_1740RFER_1744
REUT381666 H16_A2561H16_A2563H16_A2555H16_A2553H16_A2552H16_A2557H16_A2558H16_A2554
REUT264198 REUT_A2257REUT_A2259REUT_A2252REUT_A2250REUT_A2249REUT_A2254REUT_A2255REUT_A2251
PSYR223283 PSPTO_4222PSPTO_4224PSPTO_4217PSPTO_4215PSPTO_4214PSPTO_4219PSPTO_4220PSPTO_4216
PSYR205918 PSYR_3956PSYR_3958PSYR_3951PSYR_3949PSYR_3948PSYR_3953PSYR_3954PSYR_3950
PSTU379731 PST_1225PST_1223PST_1231PST_1233PST_1234PST_1229PST_1228PST_1232
PSP296591 BPRO_3641BPRO_3643BPRO_3635BPRO_3633BPRO_3632BPRO_3637BPRO_3638BPRO_3634
PPUT76869 PPUTGB1_4378PPUTGB1_4380PPUTGB1_4374PPUTGB1_4372PPUTGB1_4371PPUTGB1_4375PPUTGB1_4376PPUTGB1_4373
PPUT351746 PPUT_4292PPUT_4294PPUT_4288PPUT_4286PPUT_4285PPUT_4289PPUT_4290PPUT_4287
PPUT160488 PP_1429PP_1427PP_1433PP_1435PP_1436PP_1432PP_1431PP_1434
PPRO298386 PBPRA3093PBPRA3095PBPRA3089PBPRA3087PBPRA3086PBPRA3090PBPRA3091PBPRA3088
PNAP365044 PNAP_3066PNAP_3068PNAP_3061PNAP_3059PNAP_3058PNAP_3063PNAP_3064PNAP_3060
PMUL272843 PM1787PM1789PM0061PM1867PM0062PM0063PM0060
PMEN399739 PMEN_1469PMEN_1467PMEN_1475PMEN_1477PMEN_1478PMEN_1473PMEN_1472PMEN_1476
PLUM243265 PLU3344PLU3346PLU3340PLU3338PLU3337PLU3341PLU3342PLU3339
PING357804 PING_0067PING_0065PING_0640PING_0642PING_0643PING_0639PING_0638PING_0641
PHAL326442 PSHAA0728PSHAA0726PSHAA0732PSHAA0734PSHAA0735PSHAA0731PSHAA0730PSHAA0733
PFLU220664 PFL_1450PFL_1448PFL_1071PFL_1073PFL_1074PFL_1070PFL_1069PFL_1072
PFLU216595 PFLU1469PFLU1467PFLU1060PFLU1062PFLU1063PFLU1059PFLU1058PFLU1061
PFLU205922 PFL_1364PFL_1362PFL_0994PFL_0996PFL_0997PFL_0993PFL_0992PFL_0995
PENT384676 PSEEN4294PSEEN4296PSEEN4290PSEEN4288PSEEN4287PSEEN4291PSEEN4292PSEEN4289
PCAR338963 PCAR_3124PCAR_1403PCAR_0597PCAR_1002PCAR_1617PCAR_1618PCAR_1405
PATL342610 PATL_3153PATL_3155PATL_3149PATL_3710PATL_3709PATL_3150PATL_3151PATL_3148
PAER208964 PA0764PA0762PA0770PA0772PA0773PA0768PA0767PA0771
PAER208963 PA14_54410PA14_54430PA14_54330PA14_54300PA14_54290PA14_54350PA14_54370PA14_54320
NOCE323261 NOC_2464NOC_2466NOC_2458NOC_0794NOC_0795NOC_2460NOC_2461NOC_2457
NMUL323848 NMUL_A1748NMUL_A1746NMUL_A1753NMUL_A1757NMUL_A1759NMUL_A1752NMUL_A1751NMUL_A1754
MSUC221988 MS2230MS2228MS0368MS0239MS0370MS0371MS0367
MSP400668 MMWYL1_1100MMWYL1_1098MMWYL1_1246MMWYL1_1248MMWYL1_2830MMWYL1_1245MMWYL1_1244MMWYL1_1247
MPET420662 MPE_A0644MPE_A0642MPE_A0650MPE_A0652MPE_A0653MPE_A0648MPE_A0647MPE_A0651
MFLA265072 MFLA_1002MFLA_1000MFLA_1007MFLA_1010MFLA_1011MFLA_1005MFLA_1004MFLA_1008
MCAP243233 MCA_1469MCA_1471MCA_1463MCA_1461MCA_1667MCA_1465MCA_1466MCA_1462
MAQU351348 MAQU_2261MAQU_2263MAQU_2245MAQU_2243MAQU_2242MAQU_2247MAQU_2248MAQU_2244
LPNE400673 LPC_1001LPC_1314LPC_2346LPC_2343LPC_1316LPC_1317LPC_2347
LPNE297246 LPP1535LPP1834LPP1005LPP1008LPP1836LPP1837LPP1004
LPNE297245 LPL1448LPL1831LPL0974LPL0975LPL1833LPL1834LPL0973
LPNE272624 LPG1577LPG1869LPG0943LPG0946LPG1871LPG1872LPG0942
LCHO395495 LCHO_0603LCHO_0605LCHO_0598LCHO_0596LCHO_0595LCHO_0600LCHO_0601LCHO_0597
KPNE272620 GKPORF_B2227GKPORF_B2229GKPORF_B2223GKPORF_B2221GKPORF_B2220GKPORF_B2224GKPORF_B2225GKPORF_B2222
JSP375286 MMA_1364MMA_1362MMA_1370MMA_1372MMA_1373MMA_1368MMA_1367MMA_1371
ILOI283942 IL0814IL0816IL0810IL0808IL0807IL0811IL0812IL0809
HSOM228400 HSM_0404HSM_0406HSM_0838HSM_1984HSM_0837HSM_0836HSM_0839
HSOM205914 HS_1607HS_1605HS_1240HS_0093HS_1241HS_1242HS_1239
HINF71421 HI_0630HI_0628HI_0014HI_0332HI_0015HI_0016HI_0013
HINF281310 NTHI0716NTHI0719NTHI0019NTHI0450NTHI0020NTHI0021NTHI0018
HHAL349124 HHAL_0038HHAL_0040HHAL_0034HHAL_0032HHAL_0031HHAL_0035HHAL_0036HHAL_0033
HCHE349521 HCH_01792HCH_01790HCH_01800HCH_01803HCH_00130HCH_01798HCH_01797HCH_01801
HARS204773 HEAR2069HEAR2071HEAR2063HEAR2061HEAR2060HEAR2065HEAR2066HEAR2062
ESP42895 ENT638_3058ENT638_3060ENT638_3054ENT638_3052ENT638_3051ENT638_3055ENT638_3056ENT638_3053
EFER585054 EFER_0503EFER_0501EFER_0507EFER_0509EFER_0510EFER_0506EFER_0505EFER_0508
ECOO157 RSEBRPOERNCRECOPDXJLEPBLEPAERA
ECOL83334 ECS3437ECS3439ECS3433ECS3431ECS3430ECS3434ECS3435ECS3432
ECOL585397 ECED1_3001ECED1_3003ECED1_2996ECED1_2994ECED1_2993ECED1_2998ECED1_2999ECED1_2995
ECOL585057 ECIAI39_2776ECIAI39_2778ECIAI39_2772ECIAI39_2770ECIAI39_2769ECIAI39_2773ECIAI39_2774ECIAI39_2771
ECOL585056 ECUMN_2893ECUMN_2895ECUMN_2888ECUMN_2886ECUMN_2885ECUMN_2890ECUMN_2891ECUMN_2887
ECOL585055 EC55989_2860EC55989_2862EC55989_2855EC55989_2853EC55989_2852EC55989_2857EC55989_2858EC55989_2854
ECOL585035 ECS88_2745ECS88_2747ECS88_2740ECS88_2738ECS88_2737ECS88_2742ECS88_2743ECS88_2739
ECOL585034 ECIAI1_2684ECIAI1_2686ECIAI1_2678ECIAI1_2676ECIAI1_2675ECIAI1_2680ECIAI1_2681ECIAI1_2677
ECOL481805 ECOLC_1106ECOLC_1104ECOLC_1110ECOLC_1112ECOLC_1113ECOLC_1109ECOLC_1108ECOLC_1111
ECOL469008 ECBD_1110ECBD_1108ECBD_1114ECBD_1116ECBD_1117ECBD_1113ECBD_1112ECBD_1115
ECOL439855 ECSMS35_2724ECSMS35_2726ECSMS35_2720ECSMS35_2718ECSMS35_2717ECSMS35_2721ECSMS35_2722ECSMS35_2719
ECOL413997 ECB_02465ECB_02467ECB_02461ECB_02459ECB_02458ECB_02462ECB_02463ECB_02460
ECOL409438 ECSE_2859ECSE_2861ECSE_2855ECSE_2853ECSE_2852ECSE_2856ECSE_2857ECSE_2854
ECOL405955 APECO1_3960APECO1_3958APECO1_3964APECO1_3966APECO1_3967APECO1_3963APECO1_3962APECO1_3965
ECOL364106 UTI89_C2893UTI89_C2895UTI89_C2888UTI89_C2886UTI89_C2885UTI89_C2890UTI89_C2891UTI89_C2887
ECOL362663 ECP_2573ECP_2575ECP_2569ECP_2567ECP_2566ECP_2570ECP_2571ECP_2568
ECOL331111 ECE24377A_2857ECE24377A_2859ECE24377A_2853ECE24377A_2851ECE24377A_2850ECE24377A_2854ECE24377A_2855ECE24377A_2852
ECOL316407 ECK2569:JW2555:B2571ECK2571:JW2557:B2573ECK2565:JW2551:B2567ECK2563:JW2549:B2565ECK2562:JW2548:B2564ECK2566:JW2552:B2568ECK2567:JW2553:B2569ECK2564:JW2550:B2566
ECOL199310 C3095C3097C3091C3089C3088C3092C3093C3090
ECAR218491 ECA3282ECA3284ECA3278ECA3276ECA3275ECA3279ECA3280ECA3277
DARO159087 DARO_2022DARO_2029DARO_2031DARO_2032DARO_2027DARO_2026DARO_2030
CVIO243365 CV_2060CV_2058CV_2066CV_2069CV_2070CV_2064CV_2063CV_2067
CSAL290398 CSAL_1626CSAL_1631CSAL_1633CSAL_1634CSAL_1630CSAL_1629CSAL_1632
CPSY167879 CPS_4127CPS_4129CPS_4122CPS_4120CPS_4119CPS_4123CPS_4124CPS_4121
CJAP155077 CJA_2211CJA_2213CJA_2581CJA_2578CJA_1791CJA_2583CJA_2584CJA_2580
BVIE269482 BCEP1808_1048BCEP1808_1046BCEP1808_1053BCEP1808_1055BCEP1808_1056BCEP1808_1052BCEP1808_1051BCEP1808_1054
BTHA271848 BTH_I1725BTH_I1723BTH_I1730BTH_I1732BTH_I1733BTH_I1729BTH_I1728BTH_I1731
BSP36773 BCEP18194_A4241BCEP18194_A4239BCEP18194_A4246BCEP18194_A4248BCEP18194_A4249BCEP18194_A4245BCEP18194_A4244BCEP18194_A4247
BPSE320373 BURPS668_2784BURPS668_2786BURPS668_2777BURPS668_2776BURPS668_2780BURPS668_2781BURPS668_2778
BPSE320372 BURPS1710B_A3147BURPS1710B_A3149BURPS1710B_A3141BURPS1710B_A3139BURPS1710B_A3138BURPS1710B_A3142BURPS1710B_A3143BURPS1710B_A3140
BPSE272560 BPSL2434BPSL2436BPSL2429BPSL2427BPSL2426BPSL2430BPSL2431BPSL2428
BPET94624 BPET1760BPET1758BPET1764BPET1766BPET3259BPET1763BPET1762BPET1765
BPER257313 BP2435BP2437BP2431BP2429BP2078BP2432BP2433BP2430
BPAR257311 BPP3299BPP3301BPP3295BPP3293BPP1762BPP3296BPP3297BPP3294
BMAL320389 BMA10247_1794BMA10247_1796BMA10247_1789BMA10247_1787BMA10247_1786BMA10247_1790BMA10247_1791BMA10247_1788
BMAL320388 BMASAVP1_A2471BMASAVP1_A2473BMASAVP1_A2466BMASAVP1_A2464BMASAVP1_A2463BMASAVP1_A2467BMASAVP1_A2468BMASAVP1_A2465
BMAL243160 BMA_0538BMA_0536BMA_0543BMA_0545BMA_0546BMA_0542BMA_0541BMA_0544
BCEN331272 BCEN2424_1129BCEN2424_1127BCEN2424_1134BCEN2424_1136BCEN2424_1137BCEN2424_1133BCEN2424_1132BCEN2424_1135
BCEN331271 BCEN_0649BCEN_0647BCEN_0654BCEN_0656BCEN_0657BCEN_0653BCEN_0652BCEN_0655
BBRO257310 BB3750BB3752BB3746BB3744BB3346BB3747BB3748BB3745
BAMB398577 BAMMC406_1009BAMMC406_1007BAMMC406_1014BAMMC406_1016BAMMC406_1017BAMMC406_1013BAMMC406_1012BAMMC406_1015
BAMB339670 BAMB_1005BAMB_1003BAMB_1010BAMB_1012BAMB_1013BAMB_1009BAMB_1008BAMB_1011
ASP76114 EBA5465EBA5463EBA5539EBA5541EBA5544EBA5536EBA5535EBA5540
ASP62928 AZO1632AZO1630AZO1642AZO1644AZO1645AZO1640AZO1639AZO1643
ASP232721 AJS_3272AJS_3274AJS_3267AJS_3265AJS_3263AJS_3269AJS_3270AJS_3266
ASAL382245 ASA_3490ASA_3492ASA_3486ASA_3484ASA_3483ASA_3487ASA_3488ASA_3485
AHYD196024 AHA_0796AHA_0794AHA_0800AHA_0802AHA_0803AHA_0799AHA_0798AHA_0801
AFER243159 AFE_1687AFE_1681AFE_1679AFE_1678AFE_1683AFE_1684AFE_1680
AEHR187272 MLG_1341MLG_1339MLG_1347MLG_1349MLG_1350MLG_1345MLG_1344MLG_1348
ABOR393595 ABO_1637ABO_1639ABO_1631ABO_1629ABO_1628ABO_1633ABO_1634ABO_1630
ABAU360910 BAV1127BAV1125BAV1131BAV1133BAV2459BAV1130BAV1129BAV1132
AAVE397945 AAVE_1191AAVE_1189AAVE_1196AAVE_1198AAVE_1199AAVE_1194AAVE_1193AAVE_1197


Organism features enriched in list (features available for 150 out of the 157 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.0000280992
Disease:Bubonic_plague 0.000269066
Disease:Dysentery 0.000269066
Disease:Gastroenteritis 0.00012461013
Disease:Legionnaire's_disease 0.004252744
Endospores:No 1.528e-729211
GC_Content_Range4:0-40 7.797e-2210213
GC_Content_Range4:40-60 8.624e-987224
GC_Content_Range4:60-100 0.000296553145
GC_Content_Range7:30-40 5.762e-1410166
GC_Content_Range7:50-60 5.356e-1054107
GC_Content_Range7:60-70 0.000023753134
Genome_Size_Range5:0-2 3.894e-212155
Genome_Size_Range5:2-4 1.712e-726197
Genome_Size_Range5:4-6 9.723e-2599184
Genome_Size_Range5:6-10 0.00020912347
Genome_Size_Range9:1-2 1.610e-162128
Genome_Size_Range9:2-3 1.514e-612120
Genome_Size_Range9:4-5 1.132e-84896
Genome_Size_Range9:5-6 1.642e-125188
Genome_Size_Range9:6-8 0.00001052238
Gram_Stain:Gram_Neg 6.169e-27138333
Habitat:Specialized 0.0043805653
Motility:No 5.342e-1111151
Motility:Yes 3.929e-14108267
Optimal_temp.:- 0.008914177257
Optimal_temp.:35-37 0.0051649813
Oxygen_Req:Anaerobic 3.181e-104102
Oxygen_Req:Facultative 1.804e-982201
Pathogenic_in:No 0.000063039226
Pathogenic_in:Plant 0.00011041115
Shape:Coccus 1.847e-8382
Shape:Rod 4.281e-20134347
Shape:Spiral 0.0003645134
Temp._range:Mesophilic 0.0003717135473
Temp._range:Psychrophilic 0.009533269
Temp._range:Thermophilic 0.0002734135



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 123
Effective number of orgs (counting one per cluster within 468 clusters): 113

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 101
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTHE300852 ncbi Thermus thermophilus HB81
TTHE262724 ncbi Thermus thermophilus HB271
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols1
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TDEN243275 ncbi Treponema denticola ATCC 354051
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
STOK273063 ncbi Sulfolobus tokodaii 70
SSP64471 ncbi Synechococcus sp. CC93111
SSOL273057 ncbi Sulfolobus solfataricus P20
SMAR399550 ncbi Staphylothermus marinus F10
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14351
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23381
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83251
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RSP101510 ncbi Rhodococcus jostii RHA11
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332091
RBEL336407 ncbi Rickettsia bellii RML369-C1
PTOR263820 ncbi Picrophilus torridus DSM 97900
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257451
PMAR167542 ncbi Prochlorococcus marinus MIT 95151
PMAR167540 Prochlorococcus marinus pastoris MED4ax1
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13751
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 171
PHOR70601 ncbi Pyrococcus horikoshii OT30
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PAST100379 Onion yellows phytoplasma1
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PAER178306 ncbi Pyrobaculum aerophilum IM20
PACN267747 ncbi Propionibacterium acnes KPA1712021
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong1
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
NFAR247156 ncbi Nocardia farcinica IFM 101521
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG11
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MLEP272631 ncbi Mycobacterium leprae TN1
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L11
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273431
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MART243272 ncbi Mycoplasma arthritidis 158L3-11
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
LREU557436 ncbi Lactobacillus reuteri DSM 200161
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82931
LJOH257314 ncbi Lactobacillus johnsonii NCC 5331
LHEL405566 ncbi Lactobacillus helveticus DPC 45711
LGAS324831 ncbi Lactobacillus gasseri ATCC 333231
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118421
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3651
LBRE387344 ncbi Lactobacillus brevis ATCC 3671
LACI272621 ncbi Lactobacillus acidophilus NCFM1
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSAL478009 ncbi Halobacterium salinarum R10
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMAR272569 ncbi Haloarcula marismortui ATCC 430490
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
DSP255470 ncbi Dehalococcoides sp. CBDB11
DSP216389 ncbi Dehalococcoides sp. BAV11
DRAD243230 ncbi Deinococcus radiodurans R11
DGEO319795 ncbi Deinococcus geothermalis DSM 113001
DETH243164 ncbi Dehalococcoides ethenogenes 1951
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE251
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CEFF196164 ncbi Corynebacterium efficiens YS-3141
CCAV227941 ncbi Chlamydophila caviae GPIC0
CABO218497 ncbi Chlamydophila abortus S26/30
BXEN266265 ncbi Burkholderia xenovorans LB4000
BTUR314724 ncbi Borrelia turicatae 91E1351
BLON206672 ncbi Bifidobacterium longum NCC27050
BHER314723 ncbi Borrelia hermsii DAH0
BGAR290434 ncbi Borrelia garinii PBi1
BBUR224326 ncbi Borrelia burgdorferi B311
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB1
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP1667 Arthrobacter sp.1
APER272557 ncbi Aeropyrum pernix K10
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
AAUR290340 ncbi Arthrobacter aurescens TC11


Names of the homologs of the genes in the group in each of these orgs
  G7348   EG11897   EG10857   EG10832   EG10693   EG10530   EG10529   EG10270   
UURE95667
UURE95664 UUR10_0331
UPAR505682
UMET351160
TWHI218496
TWHI203267
TVOL273116
TTHE300852 TTHA0120
TTHE262724 TT_C1874
TPEN368408
TPAL243276 TP_0809
TKOD69014
TDEN243275 TDE_2320
TACI273075
STOK273063
SSP64471 GSYN1248
SSOL273057
SMAR399550
SHAE279808 SH1332
SERY405948 SACE_1870
SAUR93061 SAOUHSC_01688
SACI330779
RSP101510 RHA1_RO06341
RSAL288705 RSAL33209_1384
RBEL336407 RBE_1182
PTOR263820
PPEN278197 PEPE_1104
PMAR167542 P9515ORF_1252
PMAR167540 PMM1107
PMAR167539 PRO_1089
PISL384616
PINT246198 PIN_A0091
PHOR70601
PFUR186497
PAST100379 PAM625
PARS340102
PAER178306
PACN267747 PPA1266
PABY272844
OTSU357244 OTBS_1702
NPHA348780
NFAR247156 NFA23350
MTHE349307
MTHE187420
MSYN262723
MSTA339860
MSED399549
MPUL272635
MPNE272634
MPEN272633
MMYC272632 MSC_0462
MMOB267748
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR368407
MMAR267377
MLEP272631 ML1659
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGEN243273
MFLO265311 MFL266
MCAP340047 MCAP_0507
MBUR259564
MBAR269797
MART243272 MART0536
MAEO419665
MACE188937
LREU557436 LREU_0738
LMES203120 LEUM_0780
LJOH257314 LJ_1322
LHEL405566 LHV_1301
LGAS324831 LGAS_1118
LDEL390333 LDB1251
LDEL321956 LBUL_1169
LBRE387344 LVIS_0751
LACI272621 LBA1201
IHOS453591
HWAL362976
HSP64091
HSAL478009
HMUK485914
HMAR272569
HBUT415426
DSP255470 CBDBA994
DSP216389 DEHABAV1_0908
DRAD243230 DR_0646
DGEO319795 DGEO_2269
DETH243164 DET_1025
CTRA471473
CTRA471472
CSUL444179
CPRO264201 PC0274
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CMUR243161
CMET456442
CMAQ397948
CKOR374847
CFEL264202
CEFF196164 CE1976
CCAV227941
CABO218497
BXEN266265
BTUR314724 BT0705
BLON206672
BHER314723
BGAR290434 BG0727
BBUR224326 BB_0705
AYEL322098 AYWB_110
AURANTIMONAS
ASP1667 ARTH_2651
APER272557
AFUL224325
AAUR290340 AAUR_2641


Organism features enriched in list (features available for 116 out of the 123 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.0009990892
Arrangment:Pairs 0.004616513112
Arrangment:Tetrads 0.001502944
Disease:Pharyngitis 2.014e-688
Disease:bronchitis_and_pneumonitis 2.014e-688
Endospores:No 1.428e-1072211
Endospores:Yes 0.0004436253
GC_Content_Range4:60-100 0.002817018145
GC_Content_Range7:0-30 0.00041141947
GC_Content_Range7:60-70 0.002647216134
Genome_Size_Range5:0-2 2.601e-1870155
Genome_Size_Range5:4-6 2.338e-155184
Genome_Size_Range9:0-1 5.505e-102027
Genome_Size_Range9:1-2 4.319e-950128
Genome_Size_Range9:4-5 2.558e-7396
Genome_Size_Range9:5-6 1.857e-7288
Genome_Size_Range9:6-8 0.0016319138
Gram_Stain:Gram_Neg 1.065e-1331333
Habitat:Multiple 2.519e-616178
Habitat:Specialized 0.00027762153
Motility:Yes 0.001938940267
Optimal_temp.:- 0.000022932257
Optimal_temp.:100 0.007714233
Optimal_temp.:35-40 0.007714233
Optimal_temp.:42 0.007714233
Optimal_temp.:85 0.001502944
Oxygen_Req:Aerobic 0.000640923185
Oxygen_Req:Anaerobic 3.098e-638102
Pathogenic_in:Human 0.001218129213
Pathogenic_in:No 0.001055159226
Salinity:Extreme_halophilic 0.003983857
Shape:Irregular_coccus 4.431e-131717
Shape:Rod 5.308e-1138347
Shape:Sphere 1.359e-91619
Temp._range:Hyperthermophilic 1.403e-81723
Temp._range:Mesophilic 0.000163280473



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
AST-PWY (arginine degradation II (AST pathway))1201020.6727
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181400.6594
GLYCOCAT-PWY (glycogen degradation I)2461470.6429
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951260.6128
PWY-5918 (heme biosynthesis I)2721460.5774
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3001530.5727
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251310.5719
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2861470.5559
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)1761110.5473
PWY-1269 (CMP-KDO biosynthesis I)3251540.5336
PWY-5148 (acyl-CoA hydrolysis)2271260.5285
PWY-5386 (methylglyoxal degradation I)3051480.5261
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2901440.5256
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2911440.5236
GLUCONSUPER-PWY (D-gluconate degradation)2291260.5236
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2961450.5212
PWY-4041 (γ-glutamyl cycle)2791400.5181
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)149970.5153
GALACTITOLCAT-PWY (galactitol degradation)73630.5127
PWY-5755 (4-hydroxybenzoate biosynthesis II (bacteria and fungi))81670.5121
ECASYN-PWY (enterobacterial common antigen biosynthesis)1911120.5121
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491300.5076
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491300.5076
TYRFUMCAT-PWY (tyrosine degradation I)1841090.5076
GLUTATHIONESYN-PWY (glutathione biosynthesis)3391530.5016
PWY0-981 (taurine degradation IV)106770.4948
NAGLIPASYN-PWY (lipid IVA biosynthesis)3481540.4936
GLUCARDEG-PWY (D-glucarate degradation I)152940.4794
PWY-5913 (TCA cycle variation IV)3011400.4746
LIPASYN-PWY (phospholipases)2121140.4727
PWY0-1182 (trehalose degradation II (trehalase))70580.4725
PWY-5857 (ubiquinone-10 biosynthesis (prokaryotic))1831030.4617
PWY0-1329 (succinate to cytochrome bo oxidase electron transfer)96690.4588
PWY0-541 (cyclopropane fatty acid (CFA) biosynthesis)3001370.4543
PWY-6196 (serine racemization)102710.4526
P184-PWY (protocatechuate degradation I (meta-cleavage pathway))94670.4474
PWY-5855 (ubiquinone-7 biosynthesis (prokaryotic))1911030.4399
PWY-6134 (tyrosine biosynthesis IV)89640.4392
GLUCARGALACTSUPER-PWY (superpathway of D-glucarate and D-galactarate degradation)135820.4305
PWY0-845 (superpathway of pyridoxal 5'-phosphate biosynthesis and salvage)3291410.4302
PWY-561 (superpathway of glyoxylate cycle)162910.4229
GLYOXYLATE-BYPASS (glyoxylate cycle)169930.4192
GALACTARDEG-PWY (D-galactarate degradation I)151860.4137
CHOLINE-BETAINE-ANA-PWY (choline degradation I)135800.4126
PWY0-1335 (NADH to cytochrome bo oxidase electron transfer)112710.4118
BETSYN-PWY (glycine betaine biosynthesis I (Gram-negative bacteria))138810.4115
4AMINOBUTMETAB-PWY (superpathway of 4-aminobutyrate degradation)2121060.4102
LPSSYN-PWY (superpathway of lipopolysaccharide biosynthesis)91620.4090
UBISYN-PWY (ubiquinol-8 biosynthesis (prokaryotic))3981530.4056
PWY-5861 (superpathway of demethylmenaquinone-8 biosynthesis)50420.4001



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG11897   EG10857   EG10832   EG10693   EG10530   EG10529   EG10270   
G73480.9997730.9996160.9995570.9994520.9996560.999690.999602
EG118970.9995320.9995430.9993320.9995540.9996040.99952
EG108570.9997880.9997640.9999270.999750.999929
EG108320.9997870.9997370.999720.999885
EG106930.9997150.9994510.999785
EG105300.9998620.999887
EG105290.999808
EG10270



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PAIRWISE BLAST SCORES:

  G7348   EG11897   EG10857   EG10832   EG10693   EG10530   EG10529   EG10270   
G73480.0f0-------
EG11897-0.0f0------
EG10857--0.0f0-----
EG10832---0.0f0----
EG10693----0.0f0---
EG10530-----0.0f0--
EG10529------0.0f0-
EG10270-------0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10270 EG10529 EG10530 EG10693 EG10832 EG10857 EG11897 G7348 (centered at EG10530)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7348   EG11897   EG10857   EG10832   EG10693   EG10530   EG10529   EG10270   
140/623287/623414/623219/623312/623368/623416/623406/623
AAEO224324:0:Tyes----3360-741
AAUR290340:2:Tyes-0------
AAVE397945:0:Tyes207910548
ABAC204669:0:Tyes-2468-959-363803316
ABAU360910:0:Tyes20681341547
ABOR393595:0:Tyes911310562
ABUT367737:0:Tyes--1132-1701560-
ACAU438753:0:Tyes-21981771-1768177001772
ACEL351607:0:Tyes-5720-----
ACRY349163:8:Tyes--1-2388010262
ADEH290397:0:Tyes-2800157-0122121160
AEHR187272:0:Tyes2081011659
AFER243159:0:Tyes-9310562
AHYD196024:0:Tyes20689547
ALAI441768:0:Tyes------0269
AMAR234826:0:Tyes--462-0199--
AMAR329726:9:Tyes-835--021382481-
AMET293826:0:Tyes-3670264--292266
ANAE240017:0:Tyes-20480-----
AORE350688:0:Tyes-025450--2649
APHA212042:0:Tyes--339-012--
APLE416269:0:Tyes-0148150-147146149
APLE434271:0:Tno-0108110-107106109
ASAL382245:5:Tyes79310452
ASP1667:3:Tyes-0------
ASP232721:2:Tyes911420673
ASP62928:0:Tyes2012141510913
ASP62977:0:Tyes--310562
ASP76114:2:Tyes20434546414044
AVAR240292:3:Tyes-4509--227849404091
AYEL322098:4:Tyes-------0
BABO262698:0:Tno------0-
BABO262698:1:Tno----6790-3
BAFZ390236:2:Fyes--44----0
BAMB339670:3:Tno207910658
BAMB398577:3:Tno207910658
BAMY326423:0:Tyes-01349---21532131
BANT260799:0:Tno--0---516497
BANT261594:2:Tno--0---537517
BANT568206:2:Tyes--0---38523833
BANT592021:2:Tno--0---541522
BAPH198804:0:Tyes--1--230
BAPH372461:0:Tyes--0--12-
BBAC264462:0:Tyes-01107-10989997-
BBAC360095:0:Tyes--134140787-
BBRO257310:0:Tyes4124144084060409410407
BBUR224326:21:Fno--0-----
BCAN483179:0:Tno------0-
BCAN483179:1:Tno----7200-3
BCEN331271:2:Tno207910658
BCEN331272:3:Tyes207910658
BCER226900:1:Tyes--2649--031113091
BCER288681:0:Tno--0---456437
BCER315749:1:Tyes--10--0545526
BCER405917:1:Tyes--0---490470
BCER572264:1:Tno--0---470451
BCIC186490:0:Tyes--2-0341
BCLA66692:0:Tyes-020861465--14371463
BFRA272559:1:Tyes-3289--34980-3661
BFRA295405:0:Tno-3597--38350-3964
BGAR290434:2:Fyes--0-----
BHAL272558:0:Tyes-02270---11191144
BHEN283166:0:Tyes--4194219594180-
BJAP224911:0:Fyes-02517-2520251856252516
BLIC279010:0:Tyes-0-----2444
BMAL243160:1:Tno207910658
BMAL320388:1:Tno810310452
BMAL320389:1:Tyes810310452
BMEL224914:0:Tno------0-
BMEL224914:1:Tno----0685-683
BMEL359391:0:Tno------0-
BMEL359391:1:Tno----6540-3
BOVI236:0:Tyes------0-
BOVI236:1:Tyes----6190-3
BPAR257311:0:Tno14551457145114490145214531450
BPER257313:0:Tyes3313333273250328329326
BPET94624:0:Tyes20681516547
BPSE272560:1:Tyes810310452
BPSE320372:1:Tno911310452
BPSE320373:1:Tno79-10342
BPUM315750:0:Tyes-01358--120321392117
BQUI283165:0:Tyes--3273297103260-
BSP107806:2:Tyes--1--230
BSP36773:2:Tyes207910658
BSP376:0:Tyes--355635533559355703555
BSUB:0:Tyes-015142484--25092486
BSUI204722:0:Tyes------0-
BSUI204722:1:Tyes----7080-3
BSUI470137:0:Tno------0-
BSUI470137:1:Tno----7250--
BTHA271848:1:Tno207910658
BTHE226186:0:Tyes-1345--6100-525
BTHU281309:1:Tno--0---464445
BTHU412694:1:Tno--0---416399
BTRI382640:1:Tyes--63163313256300632
BTUR314724:0:Fyes--0-----
BVIE269482:7:Tyes207910658
BWEI315730:4:Tyes-01947--193724362417
CACE272562:1:Tyes-1983448--460-0
CAULO:0:Tyes--5395435365380-
CBEI290402:0:Tyes--343--3031020
CBLO203907:0:Tyes--1-023-
CBLO291272:0:Tno--1-023-
CBOT36826:1:Tno--11503-0522504
CBOT441770:0:Tyes--12--0605587
CBOT441771:0:Tno--11--0555537
CBOT441772:1:Tno--0---490472
CBOT498213:1:Tno--0---601583
CBOT508765:1:Tyes--350---019
CBOT515621:2:Tyes--11--0-525
CBOT536232:0:Tno--12--0600582
CBUR227377:1:Tyes--97010118
CBUR360115:1:Tno--750896
CBUR434922:2:Tno--249103
CCHL340177:0:Tyes-14081179-07--
CCON360104:2:Tyes--0--263287-
CCUR360105:0:Tyes--1359--0856-
CDES477974:0:Tyes-14690--1714081392
CDIF272563:1:Tyes--0---12401209
CDIP257309:0:Tyes-0828-----
CEFF196164:0:Fyes--0-----
CFET360106:0:Tyes--1040-0491778-
CGLU196627:0:Tyes--0221----
CHOM360107:1:Tyes--821-9132640-
CHUT269798:0:Tyes-0--21721349-1846
CHYD246194:0:Tyes--1009--926020
CJAP155077:0:Tyes4094117787760780781777
CJEI306537:0:Tyes-4340-----
CJEJ192222:0:Tyes--765-3790173-
CJEJ195099:0:Tno--832-4150220-
CJEJ354242:2:Tyes--731-3690169-
CJEJ360109:0:Tyes--1417-0496255-
CJEJ407148:0:Tno--752-3900175-
CKLU431943:1:Tyes-----482-0
CMIC31964:2:Tyes-12710-----
CMIC443906:2:Tyes-039-----
CNOV386415:0:Tyes--8701129-011481130
CPEL335992:0:Tyes----6156130-
CPER195102:1:Tyes---1425-014491426
CPER195103:0:Tno---1665-016891666
CPER289380:3:Tyes---0--241
CPHY357809:0:Tyes--1777--220916480
CPRO264201:0:Fyes--0-----
CPSY167879:0:Tyes810310452
CRUT413404:0:Tyes--7-51506
CSAL290398:0:Tyes-0578436
CSP501479:6:Fyes--1--0-4
CSP501479:7:Fyes----0---
CSP78:2:Tyes-1140563-5595620-
CTEP194439:0:Tyes-3101760-01100--
CTET212717:0:Tyes--0--9727711
CVES412965:0:Tyes--7-51406
CVIO243365:0:Tyes2081112659
DARO159087:0:Tyes-07910548
DDES207559:0:Tyes--0-345112811291920
DETH243164:0:Tyes--0-----
DGEO319795:1:Tyes-0------
DHAF138119:0:Tyes-183765--0550518
DNOD246195:0:Tyes--1--230
DOLE96561:0:Tyes--1000-2760-613
DPSY177439:2:Tyes--1172-15430-1628
DRAD243230:3:Tyes-------0
DRED349161:0:Tyes-2190413--439417
DSHI398580:5:Tyes--4-03-5
DSP216389:0:Tyes--0-----
DSP255470:0:Tno--0-----
DVUL882:1:Tyes--1382-18486486470
ECAN269484:0:Tyes--577-089--
ECAR218491:0:Tyes79310452
ECHA205920:0:Tyes--344-1080--
ECOL199310:0:Tno79310452
ECOL316407:0:Tno79310452
ECOL331111:6:Tno79310452
ECOL362663:0:Tno79310452
ECOL364106:1:Tno810310562
ECOL405955:2:Tyes79310452
ECOL409438:6:Tyes79310452
ECOL413997:0:Tno79310452
ECOL439855:4:Tno79310452
ECOL469008:0:Tno20689547
ECOL481805:0:Tno20689547
ECOL585034:0:Tno911310562
ECOL585035:0:Tno79310452
ECOL585055:0:Tno79310452
ECOL585056:2:Tno79310452
ECOL585057:0:Tno810310562
ECOL585397:0:Tno79310452
ECOL83334:0:Tno79310452
ECOLI:0:Tno79310452
ECOO157:0:Tno810310562
EFAE226185:3:Tyes--70251--052
EFER585054:1:Tyes20689547
ELIT314225:0:Tyes----0434927432
ERUM254945:0:Tyes--575-089--
ERUM302409:0:Tno--572-091--
ESP42895:1:Tyes79310452
FALN326424:0:Tyes-1920-----
FJOH376686:0:Tyes-935--15050-1696
FMAG334413:1:Tyes--112----0
FNOD381764:0:Tyes-50433----0
FNUC190304:0:Tyes--0---625-
FPHI484022:1:Tyes--12331469-12327210
FRANT:0:Tno--37853-3794850
FSP106370:0:Tyes-248623170----
FSP1855:0:Tyes-0-1150----
FSUC59374:0:Tyes--139515650994--
FTUL351581:0:Tno--441593-4400645
FTUL393011:0:Tno--408550-4070601
FTUL393115:0:Tyes--36252-3634690
FTUL401614:0:Tyes--13441127-134501029
FTUL418136:0:Tno--1311-01305717
FTUL458234:0:Tno--435587-4340640
GBET391165:0:Tyes----10730516-
GFOR411154:0:Tyes-311--0-31082774
GKAU235909:1:Tyes-01084--109524202400
GMET269799:1:Tyes--558118012510556
GOXY290633:5:Tyes----1989155701559
GSUL243231:0:Tyes--1643012206866851641
GTHE420246:1:Tyes-0887--179122552236
GURA351605:0:Tyes-03039-2626240224013037
GVIO251221:0:Tyes-3526--019412692-
HACI382638:1:Tyes--750-01295--
HARS204773:0:Tyes911310562
HAUR316274:2:Tyes-01209---2818-
HCHE349521:0:Tyes15961594160216040160015991603
HDUC233412:0:Tyes-0362360-363364361
HHAL349124:0:Tyes79310452
HHEP235279:0:Tyes--616-78113000-
HINF281310:0:Tyes6476491396-230
HINF374930:0:Tyes134713493180-317316-
HINF71421:0:Tno5985961305-230
HMOD498761:0:Tyes-013151623-133516021621
HNEP81032:0:Tyes----729-0-
HPY:0:Tno--85-10140--
HPYL357544:1:Tyes--0-907---
HPYL85963:0:Tno--0-874---
HSOM205914:1:Tyes1512151011520-115311541151
HSOM228400:0:Tno024381596-437436439
ILOI283942:0:Tyes79310452
JSP290400:1:Tyes--6-0529488
JSP375286:0:Tyes2081011659
KPNE272620:2:Tyes79310452
KRAD266940:2:Fyes-1680-----
LACI272621:0:Tyes-------0
LBIF355278:2:Tyes-1618--0302--
LBIF456481:2:Tno-1663--0309--
LBOR355276:1:Tyes-032-914971741-
LBOR355277:1:Tno-01081-725782549-
LBRE387344:2:Tyes-------0
LCAS321967:1:Tyes------470
LCHO395495:0:Tyes810310562
LDEL321956:0:Tyes-------0
LDEL390333:0:Tyes-------0
LGAS324831:0:Tyes-------0
LHEL405566:0:Tyes-------0
LINN272626:1:Tno--446---150
LINT189518:0:Tyes--0-----
LINT189518:1:Tyes-0--3111594685-
LINT267671:0:Tno--0-----
LINT267671:1:Tno-1227--9900756-
LINT363253:3:Tyes--0--35214973
LJOH257314:0:Tyes-------0
LLAC272622:5:Tyes--432---7620
LLAC272623:0:Tyes--451---7570
LMES203120:1:Tyes-------0
LMON169963:0:Tno--371---170
LMON265669:0:Tyes--346---170
LPLA220668:0:Tyes------400
LPNE272624:0:Tno-634925149279280
LPNE297245:1:Fno-468850128528530
LPNE297246:1:Fyes-531833148358360
LPNE400673:0:Tno-0305131613133073081317
LREU557436:0:Tyes-------0
LSAK314315:0:Tyes------4150
LSPH444177:1:Tyes-292502071-1021892072
LWEL386043:0:Tyes--538--0206191
LXYL281090:0:Tyes-8070-----
MABS561007:1:Tyes-02018-----
MAER449447:0:Tyes-02892-2122209537291431
MAQU351348:2:Tyes1820310562
MART243272:0:Tyes-------0
MAVI243243:0:Tyes-3800-----
MBOV233413:0:Tno-3050-----
MBOV410289:0:Tno-4010-----
MCAP243233:0:Tyes81020192451
MCAP340047:0:Tyes-------0
MEXT419610:0:Tyes--1226012231225-1227
MFLA265072:0:Tyes2071011548
MFLO265311:0:Tyes-------0
MGIL350054:3:Tyes-5000-----
MLEP272631:0:Tyes--0-----
MLOT266835:2:Tyes-5328--0503423955036
MMAG342108:0:Tyes--4-0316085
MMAR394221:0:Tyes--1419-1421-0-
MMYC272632:0:Tyes-------0
MPET420662:1:Tyes2081011659
MSME246196:0:Tyes-0499-----
MSP164756:1:Tno-0572-----
MSP164757:0:Tno-0507-----
MSP189918:2:Tyes-0589-----
MSP266779:3:Tyes-302--556031472
MSP400668:0:Tyes201461481765145144147
MSP409:2:Tyes-59756153-6156615406152
MSUC221988:0:Tyes205620541310-133134130
MTBCDC:0:Tno-3440-----
MTBRV:0:Tno-3020-----
MTHE264732:0:Tyes-1232---376019
MTUB336982:0:Tno-3080-----
MTUB419947:0:Tyes-3190-----
MVAN350058:0:Tyes-0391-----
MXAN246197:0:Tyes-3153241-81610244
NARO279238:0:Tyes----09041699902
NEUR228410:0:Tyes-92-0451
NEUT335283:2:Tyes-92-0451
NFAR247156:2:Tyes-0------
NGON242231:0:Tyes--01137113677781
NHAM323097:2:Tyes-01963-196619642181962
NMEN122586:0:Tno--23401313314235
NMEN122587:0:Tyes--01094109379801
NMEN272831:0:Tno--091591477781
NMEN374833:0:Tno--01040103986871
NMUL323848:3:Tyes2071113658
NOCE323261:1:Tyes16421644163601163816391635
NSEN222891:0:Tyes--572-0449--
NSP103690:6:Tyes-3090--027832311699
NSP35761:1:Tyes-276713600----
NSP387092:0:Tyes--0-893516234-
NWIN323098:0:Tyes--1597-1600159801596
OANT439375:5:Tyes-101--479131401312
OCAR504832:0:Tyes-01589-1586158833221590
OIHE221109:0:Tyes-01332--134417841763
OTSU357244:0:Fyes-----0--
PACN267747:0:Tyes-0------
PAER208963:0:Tyes911310562
PAER208964:0:Tno2081011659
PARC259536:0:Tyes--356104
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