CANDIDATE ID: 84

CANDIDATE ID: 84

NUMBER OF GENES: 8
AVERAGE SCORE:    9.9965564e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.2500000e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G6780 (ddpB) (b1486)
   Products of gene:
     - YDDR-MONOMER (YddR)
     - ABC-59-CPLX (YddO/YddP/YddQ/YddR/YddS ABC transporter)

- G6431 (gsiC) (b0831)
   Products of gene:
     - YLIC-MONOMER (GsiC)
     - ABC-49-CPLX (gsiABCD glutathione ABC transporter)
       Reactions:
        glutathione[periplasmic space] + ATP + H2O  ->  glutathione[cytosol] + ADP + phosphate

- G2002 (sapA) (b1294)
   Products of gene:
     - SAPA-MONOMER (SapA)
     - ABC-29-CPLX (peptide uptake ABC transporter)
       Reactions:
        ATP + a peptide[periplasmic space] + H2O  ->  ADP + phosphate + a peptide[cytosol]

- G2001 (sapB) (b1293)
   Products of gene:
     - SAPB-MONOMER (SapB)
     - ABC-29-CPLX (peptide uptake ABC transporter)
       Reactions:
        ATP + a peptide[periplasmic space] + H2O  ->  ADP + phosphate + a peptide[cytosol]

- G2000 (sapC) (b1292)
   Products of gene:
     - SAPC-MONOMER (SapC)
     - ABC-29-CPLX (peptide uptake ABC transporter)
       Reactions:
        ATP + a peptide[periplasmic space] + H2O  ->  ADP + phosphate + a peptide[cytosol]

- EG12626 (dppC) (b3542)
   Products of gene:
     - DPPC-MONOMER (DppC)
     - ABC-8-CPLX (dipeptide ABC transporter)
       Reactions:
        ATP + a dipeptide[periplasmic space] + H2O  ->  ADP + phosphate + a dipeptide[cytosol]

- EG12625 (dppB) (b3543)
   Products of gene:
     - DPPB-MONOMER (DppB)
     - ABC-8-CPLX (dipeptide ABC transporter)
       Reactions:
        ATP + a dipeptide[periplasmic space] + H2O  ->  ADP + phosphate + a dipeptide[cytosol]

- EG10248 (dppA) (b3544)
   Products of gene:
     - DPPA-MONOMER (DppA)
     - ABC-8-CPLX (dipeptide ABC transporter)
       Reactions:
        ATP + a dipeptide[periplasmic space] + H2O  ->  ADP + phosphate + a dipeptide[cytosol]



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ORGANISMS CONTAINING AT LEAST 7 GENES FROM THE GROUP:

Total number of orgs: 150
Effective number of orgs (counting one per cluster within 468 clusters): 102

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317587
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329537
YPES386656 ncbi Yersinia pestis Pestoides F7
YPES377628 ncbi Yersinia pestis Nepal5167
YPES360102 ncbi Yersinia pestis Antiqua7
YPES214092 ncbi Yersinia pestis CO927
YPES187410 ncbi Yersinia pestis KIM 107
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80817
VEIS391735 ncbi Verminephrobacter eiseniae EF01-28
TTHE300852 ncbi Thermus thermophilus HB87
TTHE262724 ncbi Thermus thermophilus HB278
TROS309801 ncbi Thermomicrobium roseum DSM 51598
TLET416591 ncbi Thermotoga lettingae TMO8
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT28
STRO369723 ncbi Salinispora tropica CNB-4407
STHE292459 ncbi Symbiobacterium thermophilum IAM 148638
SSP644076 Silicibacter sp. TrichCH4B8
SSP292414 ncbi Ruegeria sp. TM10408
SSON300269 ncbi Shigella sonnei Ss0468
SPRO399741 ncbi Serratia proteamaculans 5688
SMEL266834 ncbi Sinorhizobium meliloti 10218
SMED366394 ncbi Sinorhizobium medicae WSM4198
SLAC55218 Ruegeria lacuscaerulensis8
SHIGELLA ncbi Shigella flexneri 2a str. 2457T8
SGLO343509 ncbi Sodalis glossinidius morsitans8
SFLE373384 ncbi Shigella flexneri 5 str. 84018
SFLE198214 ncbi Shigella flexneri 2a str. 3018
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4768
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B678
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91508
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT188
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty28
SDYS300267 ncbi Shigella dysenteriae Sd1978
SBOY300268 ncbi Shigella boydii Sb2278
SARE391037 ncbi Salinispora arenicola CNS-2057
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99418
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170258
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170298
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.18
RSOL267608 ncbi Ralstonia solanacearum GMI10007
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111708
RPOM246200 ncbi Ruegeria pomeroyi DSS-38
RMET266264 ncbi Ralstonia metallidurans CH348
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38418
RFER338969 ncbi Rhodoferax ferrireducens T1188
REUT381666 ncbi Ralstonia eutropha H168
RETL347834 ncbi Rhizobium etli CFN 428
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30008
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a8
PSP56811 Psychrobacter sp.7
PSP296591 ncbi Polaromonas sp. JS6668
PPUT76869 ncbi Pseudomonas putida GB-18
PPUT351746 ncbi Pseudomonas putida F18
PPUT160488 ncbi Pseudomonas putida KT24408
PMUL272843 ncbi Pasteurella multocida multocida Pm708
PMEN399739 ncbi Pseudomonas mendocina ymp8
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO17
PFLU220664 ncbi Pseudomonas fluorescens Pf-58
PFLU216595 ncbi Pseudomonas fluorescens SBW258
PFLU205922 ncbi Pseudomonas fluorescens Pf0-18
PENT384676 ncbi Pseudomonas entomophila L488
PCRY335284 ncbi Psychrobacter cryohalolentis K57
PAER208964 ncbi Pseudomonas aeruginosa PAO18
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA147
OIHE221109 ncbi Oceanobacillus iheyensis HTE8318
OANT439375 ncbi Ochrobactrum anthropi ATCC 491888
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E8
MSP409 Methylobacterium sp.8
MSP400668 ncbi Marinomonas sp. MWYL18
MSP266779 ncbi Chelativorans sp. BNC18
MLOT266835 ncbi Mesorhizobium loti MAFF3030998
MACE188937 ncbi Methanosarcina acetivorans C2A8
LSPH444177 ncbi Lysinibacillus sphaericus C3-418
KRAD266940 ncbi Kineococcus radiotolerans SRS302168
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785788
HPYL357544 ncbi Helicobacter pylori HPAG17
HPY ncbi Helicobacter pylori 266958
HINF71421 ncbi Haemophilus influenzae Rd KW208
HINF281310 ncbi Haemophilus influenzae 86-028NP8
HDUC233412 ncbi Haemophilus ducreyi 35000HP8
HCHE349521 ncbi Hahella chejuensis KCTC 23967
HACI382638 ncbi Helicobacter acinonychis Sheeba8
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-28
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255867
ESP42895 Enterobacter sp.8
EFER585054 ncbi Escherichia fergusonii ATCC 354698
ECOO157 ncbi Escherichia coli O157:H7 EDL9338
ECOL83334 Escherichia coli O157:H78
ECOL585397 ncbi Escherichia coli ED1a8
ECOL585057 ncbi Escherichia coli IAI398
ECOL585056 ncbi Escherichia coli UMN0268
ECOL585055 ncbi Escherichia coli 559898
ECOL585035 ncbi Escherichia coli S888
ECOL585034 ncbi Escherichia coli IAI18
ECOL481805 ncbi Escherichia coli ATCC 87398
ECOL469008 ncbi Escherichia coli BL21(DE3)8
ECOL439855 ncbi Escherichia coli SMS-3-58
ECOL413997 ncbi Escherichia coli B str. REL6068
ECOL409438 ncbi Escherichia coli SE118
ECOL405955 ncbi Escherichia coli APEC O18
ECOL364106 ncbi Escherichia coli UTI898
ECOL362663 ncbi Escherichia coli 5368
ECOL331111 ncbi Escherichia coli E24377A8
ECOL316407 ncbi Escherichia coli K-12 substr. W31108
ECOL199310 ncbi Escherichia coli CFT0738
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10438
DRED349161 ncbi Desulfotomaculum reducens MI-18
DRAD243230 ncbi Deinococcus radiodurans R18
DHAF138119 ncbi Desulfitobacterium hafniense Y518
DGEO319795 ncbi Deinococcus geothermalis DSM 113007
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G207
CVIO243365 ncbi Chromobacterium violaceum ATCC 124728
CSP501479 Citreicella sp. SE458
CPSY167879 ncbi Colwellia psychrerythraea 34H7
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF87
CKLU431943 ncbi Clostridium kluyveri DSM 5558
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29017
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C8
BVIE269482 ncbi Burkholderia vietnamiensis G48
BTHA271848 ncbi Burkholderia thailandensis E2648
BSP376 Bradyrhizobium sp.8
BSP36773 Burkholderia sp.8
BPUM315750 ncbi Bacillus pumilus SAFR-0328
BPSE320373 ncbi Burkholderia pseudomallei 6688
BPSE320372 ncbi Burkholderia pseudomallei 1710b8
BPSE272560 ncbi Burkholderia pseudomallei K962438
BPET94624 Bordetella petrii8
BPER257313 ncbi Bordetella pertussis Tohama I8
BPAR257311 ncbi Bordetella parapertussis 128228
BMEL359391 ncbi Brucella melitensis biovar Abortus 23087
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M8
BMAL320389 ncbi Burkholderia mallei NCTC 102478
BMAL320388 ncbi Burkholderia mallei SAVP18
BMAL243160 ncbi Burkholderia mallei ATCC 233448
BLIC279010 ncbi Bacillus licheniformis ATCC 145808
BHAL272558 ncbi Bacillus halodurans C-1258
BCLA66692 ncbi Bacillus clausii KSM-K168
BCEN331272 ncbi Burkholderia cenocepacia HI24248
BCEN331271 ncbi Burkholderia cenocepacia AU 10548
BBRO257310 ncbi Bordetella bronchiseptica RB508
BANT592021 ncbi Bacillus anthracis A02487
BANT261594 ncbi Bacillus anthracis Ames Ancestor7
BAMB398577 ncbi Burkholderia ambifaria MC40-68
BAMB339670 ncbi Burkholderia ambifaria AMMD8
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL038
APLE416269 ncbi Actinobacillus pleuropneumoniae L208
AORE350688 ncbi Alkaliphilus oremlandii OhILAs7
AMET293826 ncbi Alkaliphilus metalliredigens QYMF8
ABAU360910 ncbi Bordetella avium 197N8
AAVE397945 ncbi Acidovorax citrulli AAC00-17


Names of the homologs of the genes in the group in each of these orgs
  G6780   G6431   G2002   G2001   G2000   EG12626   EG12625   EG10248   
YPSE349747 YPSIP31758_4074YPSIP31758_1784YPSIP31758_1783YPSIP31758_1782YPSIP31758_4073YPSIP31758_4074YPSIP31758_4075
YPSE273123 YPTB3841YPTB2272YPTB2273YPTB2274YPTB3840YPTB3841YPTB3842
YPES386656 YPDSF_3368YPDSF_0788YPDSF_0787YPDSF_0786YPDSF_3367YPDSF_3368YPDSF_3369
YPES377628 YPN_3651YPN_1815YPN_1816YPN_1817YPN_3650YPN_3651YPN_3652
YPES360102 YPA_2952YPA_1704YPA_1705YPA_1706YPA_3828YPA_3829YPA_3830
YPES214092 YPO3450YPO2355YPO2356YPO2357YPO4001YPO4002YPO4003
YPES187410 Y0737Y1977Y1976Y1975Y3828Y3826Y3825
YENT393305 YE0490YE2125YE2126YE2127YE4081YE4082YE4083
VEIS391735 VEIS_4120VEIS_4592VEIS_4121VEIS_4120VEIS_3435VEIS_1299VEIS_4120VEIS_4591
TTHE300852 TTHA1337TTHA1337TTHA1336TTHA1337TTHA1632TTHA1338TTHA1336
TTHE262724 TT_C0972TT_C0972TT_C0971TT_C0972TT_C0973TT_C0973TT_C0972TT_C0971
TROS309801 TRD_1861TRD_1524TRD_A0699TRD_1279TRD_A0701TRD_1280TRD_1861TRD_A0699
TLET416591 TLET_0854TLET_0201TLET_0202TLET_0854TLET_0073TLET_0855TLET_0854TLET_0071
STYP99287 STM3629STM0850STM1692STM1693STM1694STM3628STM3629STM3630
STRO369723 STROP_0217STROP_1670STROP_0217STROP_1671STROP_1671STROP_0217STROP_0216
STHE292459 STH2314STH2653STH2315STH1108STH2313STH2313STH2314STH2315
SSP644076 SCH4B_2930SCH4B_3732SCH4B_2895SCH4B_3822SCH4B_0505SCH4B_3405SCH4B_3406SCH4B_2895
SSP292414 TM1040_2715TM1040_2685TM1040_2686TM1040_0037TM1040_3601TM1040_0036TM1040_0037TM1040_2686
SSON300269 SSO_1638SSO_0813SSO_1846SSO_1847SSO_1848SSO_3848SSO_3847SSO_3846
SPRO399741 SPRO_2348SPRO_1552SPRO_2629SPRO_2630SPRO_2631SPRO_0140SPRO_0139SPRO_3431
SMEL266834 SMC01526SMC03127SMC00786SMC00787SMC00788SMC00788SMC00787SMC00786
SMED366394 SMED_0330SMED_2854SMED_0329SMED_0330SMED_0331SMED_0331SMED_0330SMED_0329
SLAC55218 SL1157_0096SL1157_3372SL1157_0098SL1157_0096SL1157_0095SL1157_0095SL1157_0096SL1157_0098
SHIGELLA DPPBS0824SAPASAPBSAPCDPPCDPPBDPPA
SGLO343509 SG0061SG0061SG1506SG1507SG1510SG0062SG0061SG0060
SFLE373384 SFV_3544SFV_0814SFV_1308SFV_1307SFV_1306SFV_1736SFV_3544SFV_3543
SFLE198214 AAN45029.1AAN42415.1AAN42910.1AAN42909.1AAN42908.1AAN45028.1AAN45029.1AAN45030.1
SENT454169 SEHA_C3949SEHA_C0980SEHA_C1878SEHA_C1879SEHA_C1880SEHA_C3948SEHA_C3949SEHA_C3950
SENT321314 SCH_3560SCH_0845SCH_1685SCH_1686SCH_1687SCH_3559SCH_3560SCH_3561
SENT295319 SPA3486SPA1905SPA1192SPA1191SPA1182SPA3485SPA3486SPA3487
SENT220341 STY4169STY0889STY1369STY1368STY1357STY4170STY4169STY4168
SENT209261 T3886T2039T1597T1598T1608T3887T3886T3885
SDYS300267 SDY_4566SDY_0756SDY_1638SDY_1639SDY_1379SDY_4565SDY_4566SDY_4567
SBOY300268 SBO_1571SBO_0721SBO_1768SBO_1769SBO_1770SBO_3541SBO_3542SBO_1768
SARE391037 SARE_1662SARE_1662SARE_0256SARE_1663SARE_1663SARE_0256SARE_0255
RXYL266117 RXYL_2423RXYL_2423RXYL_2424RXYL_3026RXYL_2422RXYL_2422RXYL_2423RXYL_2424
RSPH349102 RSPH17025_3964RSPH17025_3964RSPH17025_3963RSPH17025_3964RSPH17025_3965RSPH17025_3965RSPH17025_3964RSPH17025_3963
RSPH349101 RSPH17029_3970RSPH17029_3970RSPH17029_3969RSPH17029_3970RSPH17029_3971RSPH17029_3971RSPH17029_3970RSPH17029_3969
RSPH272943 RSP_3232RSP_3232RSP_3231RSP_3232RSP_3233RSP_3233RSP_3232RSP_3231
RSOL267608 RSC1381RSC1381RSC1380RSC1381RSC2868RSC1381RSC1380
RRUB269796 RRU_A2357RRU_A2357RRU_A2356RRU_A2357RRU_A2358RRU_A2358RRU_A2357RRU_A2356
RPOM246200 SPO_1544SPO_1211SPO_2554SPO_1544SPO_1545SPO_1545SPO_1544SPO_2554
RMET266264 RMET_1409RMET_1409RMET_1408RMET_3157RMET_4577RMET_3156RMET_4576RMET_1408
RLEG216596 RL0779RL0779RL0778RL0779RL0780RL0780RL0779RL0778
RFER338969 RFER_1953RFER_3104RFER_1949RFER_1953RFER_1952RFER_1952RFER_1953RFER_1949
REUT381666 H16_A2099H16_A2099H16_A3298H16_A3297H16_A2098H16_A2098H16_B0720H16_A2100
RETL347834 RHE_CH03993RHE_PE00341RHE_CH00736RHE_CH00737RHE_CH00738RHE_CH00738RHE_CH00737RHE_CH00736
PSYR223283 PSPTO_4562PSPTO_2575PSPTO_4557PSPTO_4562PSPTO_4563PSPTO_4563PSPTO_4562PSPTO_4559
PSYR205918 PSYR_4239PSYR_2679PSYR_4235PSYR_4239PSYR_4240PSYR_4240PSYR_4239PSYR_4236
PSP56811 PSYCPRWF_1527PSYCPRWF_1526PSYCPRWF_1527PSYCPRWF_1528PSYCPRWF_1528PSYCPRWF_1527PSYCPRWF_1526
PSP296591 BPRO_2812BPRO_0138BPRO_2816BPRO_2812BPRO_2813BPRO_2813BPRO_2812BPRO_2816
PPUT76869 PPUTGB1_0924PPUTGB1_0924PPUTGB1_0928PPUTGB1_0924PPUTGB1_0923PPUTGB1_0923PPUTGB1_0924PPUTGB1_0928
PPUT351746 PPUT_0920PPUT_0920PPUT_0924PPUT_0920PPUT_0919PPUT_0919PPUT_0920PPUT_0924
PPUT160488 PP_0881PP_4455PP_0885PP_0881PP_0880PP_0880PP_0881PP_0885
PMUL272843 PM0237PM0237PM0911PM0912PM0913PM0238PM0237PM0236
PMEN399739 PMEN_0840PMEN_0840PMEN_0841PMEN_0840PMEN_0839PMEN_0839PMEN_0840PMEN_0845
PLUM243265 PLU0301PLU2587PLU2588PLU2589PLU0302PLU0301PLU0300
PFLU220664 PFL_4025PFL_4025PFL_0881PFL_0877PFL_0876PFL_0876PFL_0877PFL_0881
PFLU216595 PFLU0822PFLU0822PFLU0827PFLU0822PFLU0821PFLU0821PFLU0822PFLU0827
PFLU205922 PFL_0812PFL_0812PFL_0816PFL_0812PFL_0811PFL_0811PFL_0812PFL_0816
PENT384676 PSEEN1056PSEEN1056PSEEN1060PSEEN1056PSEEN1055PSEEN1055PSEEN1056PSEEN1060
PCRY335284 PCRYO_0758PCRYO_0759PCRYO_0758PCRYO_0757PCRYO_0757PCRYO_0758PCRYO_0759
PAER208964 PA4503PA4503PA4500PA4503PA4504PA4504PA4503PA4502
PAER208963 PA14_58440PA14_58390PA14_58440PA14_58450PA14_58450PA14_58440PA14_58420
OIHE221109 OB2450OB3068OB2451OB2450OB2449OB2449OB2450OB2451
OANT439375 OANT_1583OANT_0627OANT_1582OANT_1583OANT_1584OANT_1584OANT_1583OANT_4405
MSUC221988 MS1367MS1367MS0856MS0855MS0854MS1366MS1367MS2053
MSP409 M446_1691M446_2209M446_1690M446_1691M446_1692M446_1692M446_1691M446_1690
MSP400668 MMWYL1_0113MMWYL1_0113MMWYL1_0114MMWYL1_0113MMWYL1_0112MMWYL1_0112MMWYL1_0113MMWYL1_0114
MSP266779 MESO_0066MESO_1505MESO_0067MESO_0066MESO_0065MESO_0065MESO_0066MESO_0067
MLOT266835 MLR6671MLR5417MLR5416MLR5417MLR5418MLR5418MLR5417MLR5416
MACE188937 MA4250MA4250MA4247MA4250MA1246MA0880MA4250MA3461
LSPH444177 BSPH_0319BSPH_0319BSPH_0318BSPH_0319BSPH_0320BSPH_0320BSPH_0319BSPH_0318
KRAD266940 KRAD_2997KRAD_0146KRAD_2998KRAD_2997KRAD_3861KRAD_3861KRAD_2997KRAD_2998
KPNE272620 GKPORF_B3251GKPORF_B5299GKPORF_B0330GKPORF_B0329GKPORF_B0316GKPORF_B3250GKPORF_B3251GKPORF_B3252
HPYL357544 HPAG1_0301HPAG1_0300HPAG1_0301HPAG1_0302HPAG1_0302HPAG1_0301HPAG1_0300
HPY HP0299HP0299HP0298HP0299HP0300HP0300HP0299HP0298
HINF71421 HI_1187HI_1187HI_1638HI_1639HI_1640HI_1186HI_1187HI_0853
HINF281310 NTHI1357NTHI1357NTHI1401NTHI1400NTHI1399NTHI1355NTHI1357NTHI1021
HDUC233412 HD_0312HD_0312HD_1230HD_1231HD_1232HD_0313HD_0312HD_0215
HCHE349521 HCH_00012HCH_00012HCH_00013HCH_00011HCH_01832HCH_00012HCH_00013
HACI382638 HAC_0560HAC_0560HAC_0559HAC_0560HAC_0561HAC_0561HAC_0560HAC_0559
GTHE420246 GTNG_0479GTNG_0479GTNG_0478GTNG_0479GTNG_0480GTNG_0480GTNG_0479GTNG_0478
FNUC190304 FN0397FN0397FN0396FN0397FN0398FN0398FN0396
ESP42895 ENT638_1104ENT638_1325ENT638_2171ENT638_2172ENT638_2173ENT638_0186ENT638_0185ENT638_2107
EFER585054 EFER_3540EFER_0972EFER_1660EFER_1661EFER_1662EFER_3539EFER_3540EFER_3541
ECOO157 Z2224Z1055SAPASAPBSAPCDPPCDPPBDPPA
ECOL83334 ECS2090ECS0910ECS1871ECS1870ECS1869ECS4422ECS4423ECS4424
ECOL585397 ECED1_4222ECED1_0795ECED1_1509ECED1_1508ECED1_1507ECED1_4221ECED1_4222ECED1_4223
ECOL585057 ECIAI39_1750ECIAI39_0808ECIAI39_1645ECIAI39_1644ECIAI39_1643ECIAI39_4051ECIAI39_4052ECIAI39_4053
ECOL585056 ECUMN_1740ECUMN_1019ECUMN_1599ECUMN_1598ECUMN_1597ECUMN_4052ECUMN_4053ECUMN_4055
ECOL585055 EC55989_1618EC55989_0876EC55989_1456EC55989_1455EC55989_1454EC55989_3993EC55989_3994EC55989_3996
ECOL585035 ECS88_3963ECS88_0848ECS88_1440ECS88_1439ECS88_1438ECS88_3962ECS88_3963ECS88_3964
ECOL585034 ECIAI1_1496ECIAI1_0870ECIAI1_1319ECIAI1_1318ECIAI1_1317ECIAI1_3700ECIAI1_3701ECIAI1_3703
ECOL481805 ECOLC_2171ECOLC_2813ECOLC_2331ECOLC_2332ECOLC_2333ECOLC_0173ECOLC_0172ECOLC_0171
ECOL469008 ECBD_2153ECBD_2792ECBD_2323ECBD_2324ECBD_2325ECBD_0194ECBD_0193ECBD_0192
ECOL439855 ECSMS35_1687ECSMS35_0856ECSMS35_1828ECSMS35_1829ECSMS35_1830ECSMS35_3861ECSMS35_3862ECSMS35_3863
ECOL413997 ECB_01444ECB_00798ECB_01271ECB_01270ECB_01269ECB_03393ECB_03394ECB_03395
ECOL409438 ECSE_1576ECSE_0889ECSE_1346ECSE_1345ECSE_1344ECSE_3815ECSE_3816ECSE_3817
ECOL405955 APECO1_2905APECO1_1262APECO1_457APECO1_456APECO1_455APECO1_2906APECO1_2905APECO1_2904
ECOL364106 UTI89_C4081UTI89_C0834UTI89_C1571UTI89_C1570UTI89_C1569UTI89_C4080UTI89_C4081UTI89_C4082
ECOL362663 ECP_3644ECP_0845ECP_1352ECP_1351ECP_1350ECP_3643ECP_3644ECP_3646
ECOL331111 ECE24377A_1675ECE24377A_0902ECE24377A_1501ECE24377A_1500ECE24377A_1499ECE24377A_4034ECE24377A_4035ECE24377A_4037
ECOL316407 ECK1480:JW1481:B1486ECK0821:JW0815:B0831ECK1289:JW1287:B1294ECK1288:JW1286:B1293ECK1287:JW1285:B1292ECK3529:JW3511:B3542ECK3530:JW3512:B3543ECK3531:JW3513:B3544
ECOL199310 C4358C0916C1771C1770C1769C4357C4358C4361
ECAR218491 ECA4075ECA2833ECA1977ECA1976ECA1975ECA4392ECA4393ECA4394
DRED349161 DRED_0390DRED_2453DRED_2454DRED_2453DRED_2452DRED_2452DRED_2453DRED_2454
DRAD243230 DR_0959DR_0959DR_1290DR_0959DR_0958DR_0958DR_0959DR_1290
DHAF138119 DSY0503DSY0503DSY0502DSY0503DSY0504DSY4357DSY0503DSY0502
DGEO319795 DGEO_1190DGEO_1190DGEO_1189DGEO_1190DGEO_1191DGEO_1190DGEO_1189
DDES207559 DDE_1184DDE_1185DDE_1184DDE_1183DDE_1183DDE_1184DDE_1185
CVIO243365 CV_1098CV_1098CV_1097CV_1098CV_1099CV_1099CV_1098CV_1097
CSP501479 CSE45_2493CSE45_4965CSE45_3619CSE45_2493CSE45_4964CSE45_2494CSE45_4965CSE45_3619
CPSY167879 CPS_3776CPS_3775CPS_3776CPS_3777CPS_3777CPS_3776CPS_3775
CKOR374847 KCR_0930KCR_0930KCR_0510KCR_0930KCR_0931KCR_0930KCR_0929
CKLU431943 CKL_1312CKL_1312CKL_1311CKL_1312CKL_1051CKL_1313CKL_1312CKL_1311
CHYD246194 CHY_1129CHY_1128CHY_1129CHY_1130CHY_1130CHY_1129CHY_1128
CDES477974 DAUD_0386DAUD_0386DAUD_1982DAUD_0386DAUD_0387DAUD_0387DAUD_0386DAUD_1982
BVIE269482 BCEP1808_3129BCEP1808_4721BCEP1808_3130BCEP1808_3129BCEP1808_3128BCEP1808_3128BCEP1808_3129BCEP1808_3130
BTHA271848 BTH_I0221BTH_II1114BTH_I0220BTH_I0221BTH_I0222BTH_I0222BTH_I0221BTH_I0220
BSP376 BRADO6822BRADO2921BRADO1743BRADO1742BRADO1741BRADO1741BRADO1742BRADO1743
BSP36773 BCEP18194_A6391BCEP18194_B1866BCEP18194_B2067BCEP18194_A6391BCEP18194_A6390BCEP18194_A6390BCEP18194_A6391BCEP18194_B2067
BPUM315750 BPUM_0822BPUM_0822BPUM_0821BPUM_0822BPUM_0823BPUM_0823BPUM_0822BPUM_0821
BPSE320373 BURPS668_0244BURPS668_A1851BURPS668_0243BURPS668_0244BURPS668_0245BURPS668_0245BURPS668_0244BURPS668_0243
BPSE320372 BURPS1710B_A0462BURPS1710B_B0388BURPS1710B_A0461BURPS1710B_A0462BURPS1710B_A0463BURPS1710B_A0463BURPS1710B_A0462BURPS1710B_A0461
BPSE272560 BPSL0250BPSS1305BPSL0249BPSL0250BPSL0251BPSL0251BPSL0250BPSL0249
BPET94624 BPET1795BPET1795BPET3079BPET1795BPET2850BPET2850BPET2851BPET1794
BPER257313 BP2395BP2395BP2396BP2395BP2592BP2394BP2395BP2396
BPAR257311 BPP3260BPP3260BPP3261BPP3260BPP1445BPP1445BPP3260BPP3261
BMEL359391 BAB1_1599BAB1_1599BAB1_1599BAB1_1598BAB1_1598BAB1_1599BAB1_1600
BMEL224914 BMEI0435BMEI0435BMEI0433BMEI0435BMEI0436BMEI0436BMEI0435BMEI0433
BMAL320389 BMA10247_3377BMA10247_A1357BMA10247_3378BMA10247_3377BMA10247_A1048BMA10247_A1048BMA10247_3377BMA10247_3378
BMAL320388 BMASAVP1_A2970BMASAVP1_0400BMASAVP1_A2969BMASAVP1_A2970BMASAVP1_0249BMASAVP1_0249BMASAVP1_A2970BMASAVP1_A2969
BMAL243160 BMA_3302BMA_A0976BMA_3301BMA_3302BMA_A1276BMA_A1276BMA_3302BMA_3301
BLIC279010 BL03047BL03047BL03046BL03047BL03048BL03048BL03047BL03046
BHAL272558 BH3643BH0029BH3644BH3643BH3642BH3642BH3643BH3644
BCLA66692 ABC1241ABC0565ABC1240ABC0565ABC1242ABC1242ABC1241ABC1240
BCEN331272 BCEN2424_3044BCEN2424_4164BCEN2424_4016BCEN2424_3044BCEN2424_3043BCEN2424_3043BCEN2424_3044BCEN2424_3045
BCEN331271 BCEN_2430BCEN_4202BCEN_4350BCEN_2430BCEN_2429BCEN_2429BCEN_2430BCEN_2431
BBRO257310 BB3711BB3711BB3712BB3711BB2519BB2519BB3711BB3712
BANT592021 BAA_4748BAA_4748BAA_4746BAA_4747BAA_4747BAA_4748BAA_4746
BANT261594 GBAA4732GBAA4732GBAA4729GBAA4731GBAA4731GBAA4732GBAA4729
BAMB398577 BAMMC406_2955BAMMC406_4053BAMMC406_3923BAMMC406_2955BAMMC406_2954BAMMC406_2954BAMMC406_2955BAMMC406_3923
BAMB339670 BAMB_3089BAMB_3572BAMB_3416BAMB_3089BAMB_3088BAMB_3088BAMB_3089BAMB_3416
APLE434271 APJL_0065APJL_0065APJL_0064APJL_0801APJL_0800APJL_0066APJL_0065APJL_0866
APLE416269 APL_0065APL_0065APL_0064APL_0795APL_0794APL_0066APL_0065APL_2010
AORE350688 CLOS_1348CLOS_1348CLOS_1347CLOS_1349CLOS_1349CLOS_1348CLOS_1347
AMET293826 AMET_2908AMET_2908AMET_2909AMET_2908AMET_2006AMET_1878AMET_2908AMET_2909
ABAU360910 BAV1160BAV1160BAV1159BAV1160BAV1646BAV1646BAV1645BAV1159
AAVE397945 AAVE_1659AAVE_1659AAVE_1658AAVE_1659AAVE_0937AAVE_1659AAVE_1658


Organism features enriched in list (features available for 140 out of the 150 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Pairs 0.002706038112
Disease:Bubonic_plague 0.003475656
Disease:Dysentery 0.000176566
Endospores:No 4.740e-825211
GC_Content_Range4:0-40 4.449e-1416213
GC_Content_Range4:40-60 0.001521068224
GC_Content_Range4:60-100 2.201e-656145
GC_Content_Range7:0-30 0.0000220147
GC_Content_Range7:30-40 9.237e-915166
GC_Content_Range7:50-60 0.000042842107
GC_Content_Range7:60-70 7.068e-754134
Genome_Size_Range5:0-2 1.662e-137155
Genome_Size_Range5:2-4 1.197e-625197
Genome_Size_Range5:4-6 1.329e-1482184
Genome_Size_Range5:6-10 1.069e-62647
Genome_Size_Range9:1-2 6.690e-107128
Genome_Size_Range9:2-3 3.093e-611120
Genome_Size_Range9:4-5 1.420e-74496
Genome_Size_Range9:5-6 8.165e-63888
Genome_Size_Range9:6-8 1.454e-82538
Gram_Stain:Gram_Neg 3.530e-8107333
Gram_Stain:Gram_Pos 0.000251421150
Habitat:Aquatic 0.00115851191
Habitat:Multiple 0.001869656178
Motility:No 3.880e-715151
Motility:Yes 1.614e-688267
Oxygen_Req:Anaerobic 0.000409312102
Oxygen_Req:Facultative 0.000138466201
Shape:Coccus 8.105e-7482
Shape:Rod 1.425e-11116347



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 362
Effective number of orgs (counting one per cluster within 468 clusters): 283

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM40
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A0
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110180
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103310
XFAS405440 ncbi Xylella fastidiosa M120
XFAS183190 ncbi Xylella fastidiosa Temecula10
XFAS160492 ncbi Xylella fastidiosa 9a5c0
XCAM487884 Xanthomonas campestris pv. paulliniae0
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-100
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80040
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339130
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3060
WSUC273121 ncbi Wolinella succinogenes DSM 17400
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTUR377629 ncbi Teredinibacter turnerae T79011
TSP1755 Thermoanaerobacter sp.0
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332231
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TFUS269800 ncbi Thermobifida fusca YX0
TERY203124 ncbi Trichodesmium erythraeum IMS1011
TELO197221 ncbi Thermosynechococcus elongatus BP-11
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12510
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252590
TDEN243275 ncbi Treponema denticola ATCC 354050
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen0
STOK273063 ncbi Sulfolobus tokodaii 70
STHE322159 ncbi Streptococcus thermophilus LMD-90
STHE299768 ncbi Streptococcus thermophilus CNRZ10660
STHE264199 ncbi Streptococcus thermophilus LMG 183110
SSUI391296 ncbi Streptococcus suis 98HAH330
SSUI391295 ncbi Streptococcus suis 05ZYH330
SSP84588 ncbi Synechococcus sp. WH 81020
SSP64471 ncbi Synechococcus sp. CC93110
SSP387093 ncbi Sulfurovum sp. NBC37-11
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)0
SSP321327 ncbi Synechococcus sp. JA-3-3Ab0
SSP1148 ncbi Synechocystis sp. PCC 68030
SSP1131 Synechococcus sp. CC96050
SSOL273057 ncbi Sulfolobus solfataricus P20
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153051
SRUB309807 ncbi Salinibacter ruber DSM 138550
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370552 ncbi Streptococcus pyogenes MGAS102700
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103940
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SPNE488221 ncbi Streptococcus pneumoniae 705850
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-60
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-140
SPNE171101 ncbi Streptococcus pneumoniae R60
SPNE170187 ncbi Streptococcus pneumoniae G540
SPNE1313 Streptococcus pneumoniae0
SMUT210007 ncbi Streptococcus mutans UA1590
SMAR399550 ncbi Staphylothermus marinus F11
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14351
SGOR29390 Streptococcus gordonii Challis0
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB0
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122281
SEPI176279 ncbi Staphylococcus epidermidis RP62A1
SELO269084 ncbi Synechococcus elongatus PCC 63011
SDEG203122 ncbi Saccharophagus degradans 2-400
SAVE227882 ncbi Streptomyces avermitilis MA-46800
SAUR93062 ncbi Staphylococcus aureus aureus COL0
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83251
SAUR426430 ncbi Staphylococcus aureus aureus Newman1
SAUR418127 ncbi Staphylococcus aureus aureus Mu31
SAUR367830 Staphylococcus aureus aureus USA3001
SAUR359787 ncbi Staphylococcus aureus aureus JH11
SAUR359786 ncbi Staphylococcus aureus aureus JH91
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4761
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2521
SAUR273036 ncbi Staphylococcus aureus RF1221
SAUR196620 ncbi Staphylococcus aureus aureus MW21
SAUR158879 ncbi Staphylococcus aureus aureus N3151
SAUR158878 ncbi Staphylococcus aureus aureus Mu501
SALA317655 ncbi Sphingopyxis alaskensis RB22560
SAGA211110 ncbi Streptococcus agalactiae NEM3160
SAGA208435 ncbi Streptococcus agalactiae 2603V/R0
SAGA205921 ncbi Streptococcus agalactiae A9090
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RTYP257363 ncbi Rickettsia typhi Wilmington0
RSP357808 ncbi Roseiflexus sp. RS-11
RSP101510 ncbi Rhodococcus jostii RHA10
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332090
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RPAL316055 ncbi Rhodopseudomonas palustris BisA530
RMAS416276 ncbi Rickettsia massiliae MTU50
RFEL315456 ncbi Rickettsia felis URRWXCal20
RDEN375451 ncbi Roseobacter denitrificans OCh 1140
RCON272944 ncbi Rickettsia conorii Malish 70
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RALB246199 Ruminococcus albus 80
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97900
PSTU379731 ncbi Pseudomonas stutzeri A15010
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-10
PSP117 Pirellula sp.0
PRUM264731 ncbi Prevotella ruminicola 230
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257450
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74547 ncbi Prochlorococcus marinus MIT 93130
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR59920 ncbi Prochlorococcus marinus NATL2A1
PMAR167555 ncbi Prochlorococcus marinus NATL1A1
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95151
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13750
PMAR146891 ncbi Prochlorococcus marinus AS96010
PLUT319225 ncbi Chlorobium luteolum DSM 2731
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 170
PGIN242619 ncbi Porphyromonas gingivalis W830
PFUR186497 ncbi Pyrococcus furiosus DSM 36381
PDIS435591 ncbi Parabacteroides distasonis ATCC 85030
PCAR338963 ncbi Pelobacter carbinolicus DSM 23801
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135141
PARC259536 ncbi Psychrobacter arcticus 273-40
PAER178306 ncbi Pyrobaculum aerophilum IM20
PACN267747 ncbi Propionibacterium acnes KPA1712021
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2550
NSP387092 ncbi Nitratiruptor sp. SB155-20
NSP35761 Nocardioides sp.1
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21601
NMUL323848 ncbi Nitrosospira multiformis ATCC 251960
NMEN374833 ncbi Neisseria meningitidis 0534420
NMEN272831 ncbi Neisseria meningitidis FAM180
NMEN122587 ncbi Neisseria meningitidis Z24910
NMEN122586 ncbi Neisseria meningitidis MC580
NHAM323097 ncbi Nitrobacter hamburgensis X140
NGON242231 ncbi Neisseria gonorrhoeae FA 10900
NFAR247156 ncbi Nocardia farcinica IFM 101520
NEUT335283 ncbi Nitrosomonas eutropha C910
NEUR228410 ncbi Nitrosomonas europaea ATCC 197180
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124440
MXAN246197 ncbi Myxococcus xanthus DK 16220
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra0
MTUB336982 ncbi Mycobacterium tuberculosis F110
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE264732 ncbi Moorella thermoacetica ATCC 390730
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MTBRV ncbi Mycobacterium tuberculosis H37Rv0
MTBCDC ncbi Mycobacterium tuberculosis CDC15510
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPET420662 ncbi Methylibium petroleiphilum PM10
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR394221 ncbi Maricaulis maris MCS100
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MMAG342108 ncbi Magnetospirillum magneticum AMB-10
MLEP272631 ncbi Mycobacterium leprae TN0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-11
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MEXT419610 ncbi Methylobacterium extorquens PA10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MCAP243233 ncbi Methylococcus capsulatus Bath0
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P20
MBOV233413 ncbi Mycobacterium bovis AF2122/970
MAVI243243 ncbi Mycobacterium avium 1040
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAQU351348 ncbi Marinobacter aquaeolei VT80
MAER449447 ncbi Microcystis aeruginosa NIES-8430
MAEO419665 ncbi Methanococcus aeolicus Nankai-31
MABS561007 ncbi Mycobacterium abscessus ATCC 199771
LXYL281090 ncbi Leifsonia xyli xyli CTCB070
LSAK314315 ncbi Lactobacillus sakei sakei 23K0
LREU557436 ncbi Lactobacillus reuteri DSM 200160
LPNE400673 ncbi Legionella pneumophila Corby0
LPNE297246 ncbi Legionella pneumophila Paris0
LPNE297245 ncbi Legionella pneumophila Lens0
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 10
LPLA220668 ncbi Lactobacillus plantarum WCFS10
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82930
LLAC272623 ncbi Lactococcus lactis lactis Il14030
LLAC272622 ncbi Lactococcus lactis cremoris SK110
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1300
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566010
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LCHO395495 ncbi Leptothrix cholodnii SP-60
LCAS321967 ncbi Lactobacillus casei ATCC 3340
LBRE387344 ncbi Lactobacillus brevis ATCC 3671
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1970
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5500
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)0
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)0
LACI272621 ncbi Lactobacillus acidophilus NCFM0
JSP375286 ncbi Janthinobacterium sp. Marseille1
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HNEP81032 Hyphomonas neptunium0
HMOD498761 ncbi Heliobacterium modesticaldum Ice10
HHEP235279 ncbi Helicobacter hepaticus ATCC 514490
HHAL349124 ncbi Halorhodospira halophila SL10
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HARS204773 ncbi Herminiimonas arsenicoxydans1
GVIO251221 ncbi Gloeobacter violaceus PCC 74210
GOXY290633 ncbi Gluconobacter oxydans 621H0
GFOR411154 ncbi Gramella forsetii KT08030
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-000
FTUL418136 ncbi Francisella tularensis tularensis WY96-34180
FTUL401614 ncbi Francisella novicida U1120
FTUL393115 ncbi Francisella tularensis tularensis FSC1980
FTUL393011 ncbi Francisella tularensis holarctica OSU180
FTUL351581 Francisella tularensis holarctica FSC2000
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S850
FSP1855 Frankia sp. EAN1pec0
FSP106370 ncbi Frankia sp. CcI30
FRANT ncbi Francisella tularensis tularensis SCHU S40
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250170
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B10
FMAG334413 ncbi Finegoldia magna ATCC 293280
FJOH376686 ncbi Flavobacterium johnsoniae UW1010
FALN326424 ncbi Frankia alni ACN14a0
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ELIT314225 ncbi Erythrobacter litoralis HTCC25940
EFAE226185 ncbi Enterococcus faecalis V5830
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DSP255470 ncbi Dehalococcoides sp. CBDB11
DSP216389 ncbi Dehalococcoides sp. BAV11
DSHI398580 ncbi Dinoroseobacter shibae DFL 120
DPSY177439 ncbi Desulfotalea psychrophila LSv540
DOLE96561 ncbi Desulfococcus oleovorans Hxd30
DNOD246195 ncbi Dichelobacter nodosus VCS1703A0
DETH243164 ncbi Dehalococcoides ethenogenes 1950
DARO159087 ncbi Dechloromonas aromatica RCB0
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA0
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTET212717 ncbi Clostridium tetani E881
CTEP194439 ncbi Chlorobium tepidum TLS1
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CSP78 Caulobacter sp.0
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE250
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPHY357809 ncbi Clostridium phytofermentans ISDg0
CPER289380 ncbi Clostridium perfringens SM1011
CPER195103 ncbi Clostridium perfringens ATCC 131241
CPER195102 ncbi Clostridium perfringens 131
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10620
CNOV386415 ncbi Clostridium novyi NT0
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3820
CMIC31964 ncbi Clavibacter michiganensis sepedonicus0
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CJEJ407148 ncbi Campylobacter jejuni jejuni 811160
CJEJ360109 ncbi Campylobacter jejuni doylei 269.970
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1760
CJEJ195099 ncbi Campylobacter jejuni RM12210
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111680
CJEI306537 ncbi Corynebacterium jeikeium K4110
CJAP155077 Cellvibrio japonicus0
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334060
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3810
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130320
CFET360106 ncbi Campylobacter fetus fetus 82-400
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CEFF196164 ncbi Corynebacterium efficiens YS-3140
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131290
CDIF272563 ncbi Clostridium difficile 6300
CCUR360105 ncbi Campylobacter curvus 525.920
CCON360104 ncbi Campylobacter concisus 138260
CCHL340177 ncbi Chlorobium chlorochromatii CaD30
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1110
CBUR360115 ncbi Coxiella burnetii RSA 3310
CBUR227377 ncbi Coxiella burnetii RSA 4930
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B1
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN0
CBLO203907 ncbi Candidatus Blochmannia floridanus0
CAULO ncbi Caulobacter crescentus CB150
CACE272562 ncbi Clostridium acetobutylicum ATCC 8241
CABO218497 ncbi Chlamydophila abortus S26/30
BWEI315730 ncbi Bacillus weihenstephanensis KBAB41
BTUR314724 ncbi Borrelia turicatae 91E1350
BTHU412694 ncbi Bacillus thuringiensis Al Hakam0
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54820
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)0
BLON206672 ncbi Bifidobacterium longum NCC27051
BHER314723 ncbi Borrelia hermsii DAH0
BGAR290434 ncbi Borrelia garinii PBi0
BFRA295405 ncbi Bacteroides fragilis YCH460
BFRA272559 ncbi Bacteroides fragilis NCTC 93430
BCIC186490 Candidatus Baumannia cicadellinicola0
BCER572264 ncbi Bacillus cereus 03BB1020
BCER405917 Bacillus cereus W0
BCER315749 ncbi Bacillus cytotoxicus NVH 391-980
BCER226900 ncbi Bacillus cereus ATCC 145790
BBUR224326 ncbi Borrelia burgdorferi B310
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1000
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)0
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP76114 ncbi Aromatoleum aromaticum EbN10
ASP62977 ncbi Acinetobacter sp. ADP10
ASP62928 ncbi Azoarcus sp. BH720
ASP232721 ncbi Acidovorax sp. JS421
ASP1667 Arthrobacter sp.0
APHA212042 ncbi Anaplasma phagocytophilum HZ0
ANAE240017 Actinomyces oris MG10
AMAR329726 ncbi Acaryochloris marina MBIC110171
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232700
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-10
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C0
ACRY349163 ncbi Acidiphilium cryptum JF-50
ACEL351607 ncbi Acidothermus cellulolyticus 11B0
ABUT367737 ncbi Arcobacter butzleri RM40180
ABOR393595 ncbi Alcanivorax borkumensis SK20
AAUR290340 ncbi Arthrobacter aurescens TC10
AAEO224324 ncbi Aquifex aeolicus VF50


Names of the homologs of the genes in the group in each of these orgs
  G6780   G6431   G2002   G2001   G2000   EG12626   EG12625   EG10248   
ZMOB264203
XORY360094
XORY342109
XORY291331
XFAS405440
XFAS183190
XFAS160492
XCAM487884
XCAM316273
XCAM314565
XCAM190485
XAXO190486
WSUC273121
WPIP955
WPIP80849
UURE95667
UURE95664
UPAR505682
TWHI218496
TWHI203267
TVOL273116
TTUR377629 TERTU_2103
TSP1755
TPSE340099 TETH39_0202
TPEN368408
TPAL243276
TKOD69014
TFUS269800
TERY203124 TERY_1382
TELO197221 TLR1197
TDEN326298
TDEN292415
TDEN243275
TACI273075
SWOL335541
STOK273063
STHE322159
STHE299768
STHE264199
SSUI391296
SSUI391295
SSP84588
SSP64471
SSP387093 SUN_0892
SSP321332
SSP321327
SSP1148
SSP1131
SSOL273057
SSAP342451 SSP1794
SRUB309807
SPYO370554
SPYO370553
SPYO370552
SPYO370551
SPYO319701
SPYO293653
SPYO286636
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SPNE488221
SPNE487214
SPNE487213
SPNE171101
SPNE170187
SPNE1313
SMUT210007
SMAR399550 SMAR_0344
SHAE279808 SH1970
SGOR29390
SFUM335543
SEPI176280 SE_0680
SEPI176279 SERP0570
SELO269084 SYC0718_C
SDEG203122
SAVE227882
SAUR93062
SAUR93061 SAOUHSC_00923
SAUR426430 NWMN_0856
SAUR418127 SAHV_0981
SAUR367830 SAUSA300_0887
SAUR359787 SAURJH1_1004
SAUR359786 SAURJH9_0985
SAUR282459 SAS0856
SAUR282458 SAR0949
SAUR273036 SAB0852
SAUR196620 MW0868
SAUR158879 SA0845
SAUR158878 SAV0986
SALA317655
SAGA211110
SAGA208435
SAGA205921
SACI330779
RTYP257363
RSP357808 ROSERS_1094
RSP101510
RSAL288705
RRIC452659
RRIC392021
RPRO272947
RPAL316055
RMAS416276
RFEL315456
RDEN375451
RCON272944
RCAN293613
RBEL391896
RBEL336407
RALB246199
RAKA293614
PTOR263820
PSTU379731
PSP312153
PSP117
PRUM264731
PPEN278197
PMAR93060
PMAR74547
PMAR74546
PMAR59920 PMN2A_0705
PMAR167555 NATL1_15391
PMAR167546
PMAR167542 P9515ORF_1189
PMAR167540
PMAR167539
PMAR146891
PLUT319225 PLUT_1343
PISL384616
PINT246198
PGIN242619
PFUR186497 PF1409
PDIS435591
PCAR338963 PCAR_1867
PAST100379
PARS340102 PARS_1494
PARC259536
PAER178306
PACN267747 PPA2064
OTSU357244
NWIN323098
NSP387092
NSP35761 NOCA_4093
NSEN222891
NPHA348780 NP3582A
NMUL323848
NMEN374833
NMEN272831
NMEN122587
NMEN122586
NHAM323097
NGON242231
NFAR247156
NEUT335283
NEUR228410
NARO279238
MXAN246197
MTUB419947
MTUB336982
MTHE349307
MTHE264732
MTHE187420
MTBRV
MTBCDC
MSYN262723
MSTA339860
MSED399549
MPUL272635
MPNE272634
MPET420662
MPEN272633
MMYC272632
MMOB267748
MMAR444158
MMAR426368
MMAR402880
MMAR394221
MMAR368407
MMAR267377
MMAG342108
MLEP272631
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259 MHUN_0210
MGEN243273
MFLO265311
MEXT419610
MCAP340047
MCAP243233
MBUR259564
MBOV410289
MBOV233413
MAVI243243
MART243272
MAQU351348
MAER449447
MAEO419665 MAEO_0511
MABS561007 MAB_0427
LXYL281090
LSAK314315
LREU557436
LPNE400673
LPNE297246
LPNE297245
LPNE272624
LPLA220668
LMES203120
LLAC272623
LLAC272622
LJOH257314
LINT267671
LINT189518
LHEL405566
LGAS324831
LDEL390333
LDEL321956
LCHO395495
LCAS321967
LBRE387344 LVIS_1768
LBOR355277
LBOR355276
LBIF456481
LBIF355278
LACI272621
JSP375286 MMA_3521
IHOS453591
HNEP81032
HMOD498761
HHEP235279
HHAL349124
HBUT415426
HARS204773 HEAR3292
GVIO251221
GOXY290633
GFOR411154
FTUL458234
FTUL418136
FTUL401614
FTUL393115
FTUL393011
FTUL351581
FSUC59374
FSP1855
FSP106370
FRANT
FPHI484022
FNOD381764
FMAG334413
FJOH376686
FALN326424
ERUM302409
ERUM254945
ELIT314225
EFAE226185
ECHA205920
ECAN269484
DSP255470 CBDBA1038
DSP216389 DEHABAV1_0942
DSHI398580
DPSY177439
DOLE96561
DNOD246195
DETH243164
DARO159087
CVES412965
CTRA471473
CTRA471472
CTET212717 CTC_01377
CTEP194439 CT_1364
CSUL444179
CSP78
CRUT413404
CPRO264201
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPHY357809
CPER289380 CPR_2258
CPER195103 CPF_2555
CPER195102 CPE2273
CPEL335992
CNOV386415
CMUR243161
CMIC443906
CMIC31964
CMET456442
CMAQ397948
CJEJ407148
CJEJ360109
CJEJ354242
CJEJ195099
CJEJ192222
CJEI306537
CJAP155077
CHUT269798
CHOM360107
CGLU196627
CFET360106
CFEL264202
CEFF196164
CDIP257309
CDIF272563
CCUR360105
CCON360104
CCHL340177
CCAV227941
CBUR434922
CBUR360115
CBUR227377
CBOT508765 CLL_A2492
CBLO291272
CBLO203907
CAULO
CACE272562 CAC3644
CABO218497
BWEI315730 BCERKBAB4_0804
BTUR314724
BTHU412694
BTHE226186
BSP107806
BLON206672 BL1346
BHER314723
BGAR290434
BFRA295405
BFRA272559
BCIC186490
BCER572264
BCER405917
BCER315749
BCER226900
BBUR224326
BBAC264462
BAPH372461
BAPH198804
BAFZ390236
AYEL322098
AURANTIMONAS
ASP76114
ASP62977
ASP62928
ASP232721 AJS_0689
ASP1667
APHA212042
ANAE240017
AMAR329726 AM1_4650
AMAR234826
ALAI441768
AFER243159
AEHR187272
ADEH290397
ACRY349163
ACEL351607
ABUT367737
ABOR393595
AAUR290340
AAEO224324


Organism features enriched in list (features available for 336 out of the 362 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Clusters 0.00576051517
Arrangment:Pairs 0.006973554112
Disease:Gastroenteritis 0.0096193313
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 0.00217151111
Disease:Wide_range_of_infections 0.00217151111
Endospores:No 4.137e-8152211
Endospores:Yes 0.00257832153
GC_Content_Range4:0-40 1.333e-16169213
GC_Content_Range4:40-60 0.0000129105224
GC_Content_Range4:60-100 5.961e-661145
GC_Content_Range7:0-30 0.00009143947
GC_Content_Range7:30-40 4.156e-11130166
GC_Content_Range7:50-60 0.000294846107
GC_Content_Range7:60-70 2.013e-654134
Genome_Size_Range5:0-2 9.973e-21136155
Genome_Size_Range5:2-4 0.0000110137197
Genome_Size_Range5:4-6 3.921e-2154184
Genome_Size_Range5:6-10 1.924e-8947
Genome_Size_Range9:0-1 2.175e-72727
Genome_Size_Range9:1-2 6.603e-14109128
Genome_Size_Range9:2-3 2.294e-793120
Genome_Size_Range9:4-5 3.105e-73396
Genome_Size_Range9:5-6 2.626e-122188
Genome_Size_Range9:6-8 5.575e-9538
Gram_Stain:Gram_Neg 8.526e-7164333
Gram_Stain:Gram_Pos 0.0002449104150
Habitat:Host-associated 3.288e-6144206
Habitat:Multiple 0.000068782178
Motility:No 3.573e-12122151
Motility:Yes 5.713e-15108267
Oxygen_Req:Facultative 0.000085695201
Shape:Coccus 2.089e-107282
Shape:Rod 2.292e-16153347
Shape:Sphere 0.00232651719
Shape:Spiral 0.00122112834



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ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 13
Effective number of orgs (counting one per cluster within 468 clusters): 12

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
HACI382638 ncbi Helicobacter acinonychis Sheeba 7.851e-65078
HPY ncbi Helicobacter pylori 26695 9.777e-65218
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF8 0.00004213547
MACE188937 ncbi Methanosarcina acetivorans C2A 0.00006026538
TLET416591 ncbi Thermotoga lettingae TMO 0.00030487998
HPYL357544 ncbi Helicobacter pylori HPAG1 0.00062345217
APER272557 ncbi Aeropyrum pernix K1 0.00064722986
TTHE262724 ncbi Thermus thermophilus HB27 0.00133189608
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C 0.00134309618
DRAD243230 ncbi Deinococcus radiodurans R1 0.002819210548
CKLU431943 ncbi Clostridium kluyveri DSM 555 0.004791311268
TROS309801 ncbi Thermomicrobium roseum DSM 5159 0.004825611278
KRAD266940 ncbi Kineococcus radiotolerans SRS30216 0.006296811658


Names of the homologs of the genes in the group in each of these orgs
  G6780   G6431   G2002   G2001   G2000   EG12626   EG12625   EG10248   
HACI382638 HAC_0560HAC_0560HAC_0559HAC_0560HAC_0561HAC_0561HAC_0560HAC_0559
HPY HP0299HP0299HP0298HP0299HP0300HP0300HP0299HP0298
CKOR374847 KCR_0930KCR_0930KCR_0510KCR_0930KCR_0931KCR_0930KCR_0929
MACE188937 MA4250MA4250MA4247MA4250MA1246MA0880MA4250MA3461
TLET416591 TLET_0854TLET_0201TLET_0202TLET_0854TLET_0073TLET_0855TLET_0854TLET_0071
HPYL357544 HPAG1_0301HPAG1_0300HPAG1_0301HPAG1_0302HPAG1_0302HPAG1_0301HPAG1_0300
APER272557 APE0303APE2258APE2257APE0303APE2258APE2257
TTHE262724 TT_C0972TT_C0972TT_C0971TT_C0972TT_C0973TT_C0973TT_C0972TT_C0971
CDES477974 DAUD_0386DAUD_0386DAUD_1982DAUD_0386DAUD_0387DAUD_0387DAUD_0386DAUD_1982
DRAD243230 DR_0959DR_0959DR_1290DR_0959DR_0958DR_0958DR_0959DR_1290
CKLU431943 CKL_1312CKL_1312CKL_1311CKL_1312CKL_1051CKL_1313CKL_1312CKL_1311
TROS309801 TRD_1861TRD_1524TRD_A0699TRD_1279TRD_A0701TRD_1280TRD_1861TRD_A0699
KRAD266940 KRAD_2997KRAD_0146KRAD_2998KRAD_2997KRAD_3861KRAD_3861KRAD_2997KRAD_2998


Organism features enriched in list (features available for 13 out of the 13 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Habitat:Specialized 0.0004076653
Shape:Rod 0.00666193347



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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
GALACTITOLCAT-PWY (galactitol degradation)73620.5185
GALACTCAT-PWY (D-galactonate degradation)104740.4929
GLUCARDEG-PWY (D-glucarate degradation I)152910.4756
PWY-6196 (serine racemization)102710.4712
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)149860.4412
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951010.4376
GALACTARDEG-PWY (D-galactarate degradation I)151860.4349
GLUCARGALACTSUPER-PWY (superpathway of D-glucarate and D-galactarate degradation)135800.4328
XYLCAT-PWY (xylose degradation I)2171040.4078
PWY0-981 (taurine degradation IV)106660.4044
PWY0-1335 (NADH to cytochrome bo oxidase electron transfer)112680.4012



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G6431   G2002   G2001   G2000   EG12626   EG12625   EG10248   
G67800.9995690.999610.9997320.9995940.9997090.9998240.999723
G64310.9993670.999430.9993340.9994170.9996070.999413
G20020.9998390.9997430.9995260.999690.999829
G20010.9998230.9996970.9997420.999732
G20000.9997970.9996710.999635
EG126260.9998390.999671
EG126250.999795
EG10248



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PAIRWISE BLAST SCORES:

  G6780   G6431   G2002   G2001   G2000   EG12626   EG12625   EG10248   
G67800.0f07.4e-48----3.8e-51-
G64311.4e-540.0f0----2.2e-58-
G2002--0.0f0----1.9e-88
G20013.6e-371.8e-35-0.0f0--1.7e-48-
G2000----0.0f04.0e-47--
EG12626-----0.0f0--
EG126251.5e-709.3e-70----0.0f0-
EG10248--2.2e-94----0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- ABC-8-CPLX (dipeptide ABC transporter) (degree of match pw to cand: 0.600, degree of match cand to pw: 0.375, average score: 1.000)
  Genes in pathway or complex:
   *in cand* 0.9997 0.9994 EG10248 (dppA) DPPA-MONOMER (DppA)
   *in cand* 0.9997 0.9994 EG12626 (dppC) DPPC-MONOMER (DppC)
   *in cand* 0.9998 0.9996 EG12625 (dppB) DPPB-MONOMER (DppB)
             0.9993 0.9987 EG12628 (dppF) DPPF-MONOMER (DppF)
             0.9993 0.9987 EG12627 (dppD) DPPD-MONOMER (DppD)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9997 0.9993 G2000 (sapC) SAPC-MONOMER (SapC)
   *in cand* 0.9997 0.9994 G2001 (sapB) SAPB-MONOMER (SapB)
   *in cand* 0.9997 0.9994 G2002 (sapA) SAPA-MONOMER (SapA)
   *in cand* 0.9995 0.9993 G6431 (gsiC) YLIC-MONOMER (GsiC)
   *in cand* 0.9997 0.9996 G6780 (ddpB) YDDR-MONOMER (YddR)

- ABC-29-CPLX (peptide uptake ABC transporter) (degree of match pw to cand: 0.600, degree of match cand to pw: 0.375, average score: 1.000)
  Genes in pathway or complex:
   *in cand* 0.9997 0.9994 G2002 (sapA) SAPA-MONOMER (SapA)
   *in cand* 0.9997 0.9993 G2000 (sapC) SAPC-MONOMER (SapC)
   *in cand* 0.9997 0.9994 G2001 (sapB) SAPB-MONOMER (SapB)
             0.9993 0.9982 EG12304 (sapD) SAPD-MONOMER (SapD)
             0.9992 0.9979 EG12305 (sapF) SAPF-MONOMER (SapF)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9997 0.9994 EG10248 (dppA) DPPA-MONOMER (DppA)
   *in cand* 0.9998 0.9996 EG12625 (dppB) DPPB-MONOMER (DppB)
   *in cand* 0.9997 0.9994 EG12626 (dppC) DPPC-MONOMER (DppC)
   *in cand* 0.9995 0.9993 G6431 (gsiC) YLIC-MONOMER (GsiC)
   *in cand* 0.9997 0.9996 G6780 (ddpB) YDDR-MONOMER (YddR)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

G2000 G2001 G2002 (centered at G2001)
G6780 (centered at G6780)
G6431 (centered at G6431)
EG10248 EG12625 EG12626 (centered at EG12625)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G6780   G6431   G2002   G2001   G2000   EG12626   EG12625   EG10248   
219/623214/623200/623221/623214/623221/623206/623204/623
AAVE397945:0:Tyes711711710711-0711710
ABAC204669:0:Tyes00-0--0-
ABAU360910:0:Tyes11014874874860
ACAU438753:0:Tyes7462247-1022462247-
AFUL224325:0:Tyes0-----0-
AHYD196024:0:Tyes--2100-2
AMAR329726:9:Tyes0-------
AMET293826:0:Tyes1018101810191018126010181019
AORE350688:0:Tyes110-2210
APER272557:0:Tyes0205620550--20562055
APLE416269:0:Tyes110731730211987
APLE434271:0:Tno11070470321769
ASAL382245:5:Tyes--1384138513860-1384
ASP232721:2:Tyes-----0--
AVAR240292:3:Tyes1517---0---
BABO262698:1:Tno11-1001-
BAMB339670:2:Tno-1560----0
BAMB339670:3:Tno1--1001-
BAMB398577:2:Tno-1290----0
BAMB398577:3:Tno1--1001-
BAMY326423:0:Tyes-10--21-
BANT260799:0:Tno22--1120
BANT261594:2:Tno220-1120
BANT568206:2:Tyes22--1120
BANT592021:2:Tno220-1120
BBAC360095:0:Tyes1---00--
BBRO257310:0:Tyes12001200120112000012001201
BCAN483179:1:Tno11-1001-
BCEN331271:1:Tno-0147-----
BCEN331271:2:Tno1--10012
BCEN331272:2:Tyes-1480-----
BCEN331272:3:Tyes1--10012
BCER288681:0:Tno22--1120
BCLA66692:0:Tyes68906880690690689688
BHAL272558:0:Tyes37080370937083707370737083709
BHEN283166:0:Tyes1---00--
BJAP224911:0:Fyes03880-0184418442320-
BLIC279010:0:Tyes11012210
BLON206672:0:Tyes---0----
BMAL243160:0:Tno-0--289289--
BMAL243160:1:Tno1-01--10
BMAL320388:0:Tno-149--00--
BMAL320388:1:Tno1-01--10
BMAL320389:0:Tyes-306--00--
BMAL320389:1:Tyes0-10--01
BMEL224914:1:Tno22023320
BMEL359391:1:Tno11-10012
BOVI236:0:Tyes-0----516-
BOVI236:1:Tyes--1-00-1
BPAR257311:0:Tno17091709171017090017091710
BPER257313:0:Tyes1121195012
BPET94624:0:Tyes11129211062106210630
BPSE272560:0:Tyes-0------
BPSE272560:1:Tyes1-012210
BPSE320372:0:Tno-0------
BPSE320372:1:Tno1-012210
BPSE320373:0:Tno-0------
BPSE320373:1:Tno1-012210
BPUM315750:0:Tyes11012210
BQUI283165:0:Tyes1---001-
BSP36773:1:Tyes-0201----201
BSP36773:2:Tyes1--1001-
BSP376:0:Tyes48271113210012
BSUB:0:Tyes-0---10-
BSUI204722:1:Tyes11-1001-
BSUI470137:1:Tno11-1001-
BTHA271848:0:Tno-0------
BTHA271848:1:Tno1-012210
BTHU281309:1:Tno22--1120
BTRI382640:1:Tyes1---00--
BVIE269482:6:Tyes-0------
BVIE269482:7:Tyes1-210012
BWEI315730:4:Tyes0-------
BXEN266265:0:Tyes1---001-
BXEN266265:1:Tyes--0-----
CACE272562:1:Tyes-0------
CBEI290402:0:Tyes-9481---01
CBOT36826:1:Tno0--0----
CBOT441770:0:Tyes0--0----
CBOT441771:0:Tno0--0----
CBOT441772:1:Tno0--0----
CBOT498213:1:Tno0--0----
CBOT508765:1:Tyes-0------
CBOT515621:2:Tyes0--0----
CBOT536232:0:Tno0--0----
CDES477974:0:Tyes00156901101569
CHYD246194:0:Tyes1-012210
CKLU431943:1:Tyes2612612602610262261260
CKOR374847:0:Tyes4134130413-414413412
CPER195102:1:Tyes--0-----
CPER195103:0:Tno--0-----
CPER289380:3:Tyes--0-----
CPSY167879:0:Tyes-1012210
CSAL290398:0:Tyes-01----1
CSP501479:4:Fyes-1--0-1-
CSP501479:7:Fyes--0----0
CSP501479:8:Fyes0--0-1--
CTEP194439:0:Tyes-----0--
CTET212717:0:Tyes----0---
CVIO243365:0:Tyes11012210
DDES207559:0:Tyes1-210012
DGEO319795:1:Tyes11012-10
DHAF138119:0:Tyes11012389610
DRAD243230:3:Tyes113271001327
DRED349161:0:Tyes02066206720662065206520662067
DSP216389:0:Tyes-0------
DSP255470:0:Tno-0------
DVUL882:1:Tyes----00--
ECAR218491:0:Tyes2139858210246524662467
ECOL199310:0:Tno33740829828827337333743377
ECOL316407:0:Tno6690473472471290629052904
ECOL331111:6:Tno7440576575574301530163018
ECOL362663:0:Tno27970506505504279627972799
ECOL364106:1:Tno32360737736735323532363237
ECOL405955:2:Tyes28680554553552286728682869
ECOL409438:6:Tyes6920462461460297329742975
ECOL413997:0:Tno6410471470469260526062607
ECOL439855:4:Tno8090950951952291829192921
ECOL469008:0:Tno19632591212421252126210
ECOL481805:0:Tno20052646216121622163210
ECOL585034:0:Tno6190448447446278827892791
ECOL585035:0:Tno29990570569568299829993000
ECOL585055:0:Tno7440586585584307630773079
ECOL585056:2:Tno7220582581580302930303032
ECOL585057:0:Tno9530849848847324432453246
ECOL585397:0:Tno33270695694693332633273328
ECOL83334:0:Tno11970976975974358935903591
ECOLI:0:Tno6790478477476277027712772
ECOO157:0:Tno10910132013211322361436153616
EFER585054:1:Tyes25560678679680255525562557
ESP42895:1:Tyes9301163200920102011101945
FNUC190304:0:Tyes110122-0
GBET391165:0:Tyes-01-----
GKAU235909:1:Tyes-367--00--
GMET269799:1:Tyes----22-0
GSUL243231:0:Tyes----00--
GTHE420246:1:Tyes11012210
GURA351605:0:Tyes----00--
HACI382638:1:Tyes11012210
HARS204773:0:Tyes-----0--
HAUR316274:2:Tyes1-01-210
HCHE349521:0:Tyes112-0174812
HDUC233412:0:Tyes919189489589692910
HINF281310:0:Tyes2872873263253242862870
HINF374930:0:Tyes--013838-335
HINF71421:0:Tno3243247687697703233240
HMAR272569:8:Tyes1-----10
HMUK485914:1:Tyes013821-1381-01
HPY:0:Tno11012210
HPYL357544:1:Tyes1-012210
HPYL85963:0:Tno1101--10
HSAL478009:4:Tyes1-0---10
HSOM205914:1:Tyes--210--2
HSOM228400:0:Tno--210--2
HSP64091:2:Tno1-0---10
HWAL362976:1:Tyes9520953---952953
ILOI283942:0:Tyes--012--0
JSP290400:1:Tyes02118-0211721172118-
JSP375286:0:Tyes---0----
KPNE272620:2:Tyes2897488014130289628972898
KRAD266940:2:Fyes169501694169580780716951694
LBRE387344:2:Tyes-0------
LINN272626:1:Tno-0-0----
LINT363253:3:Tyes----00--
LMON169963:0:Tno-0-0----
LMON265669:0:Tyes-0-0----
LSPH444177:1:Tyes11012210
LWEL386043:0:Tyes-0-0----
MABS561007:1:Tyes-0------
MACE188937:0:Tyes3274327432713274347032742509
MAEO419665:0:Tyes---0----
MBAR269797:1:Tyes07342332--2328--
MFLA265072:0:Tyes362362---0362-
MGIL350054:3:Tyes-1-1001-
MHUN323259:0:Tyes-------0
MLAB410358:0:Tyes-03---04
MLOT266835:2:Tyes10511012210
MMAZ192952:0:Tyes-0---758759-
MSME246196:0:Tyes-324705729--1-
MSP164756:1:Tno00-0110-
MSP164757:0:Tno00-0110-
MSP189918:2:Tyes00-0110-
MSP266779:3:Tyes11454210012
MSP400668:0:Tyes11210012
MSP409:2:Tyes1488012210
MSUC221988:0:Tyes5215212105205211227
MVAN350058:0:Tyes00-0110-
NOCE323261:1:Tyes00-0--0-
NPHA348780:2:Tyes-----0--
NSP103690:6:Tyes0---1886---
NSP35761:1:Tyes-0------
OANT439375:4:Tyes-------0
OANT439375:5:Tyes9760975976977977976-
OCAR504832:0:Tyes30803090--003090-
OIHE221109:0:Tyes1620210012
PABY272844:0:Tyes00--11--
PACN267747:0:Tyes0-------
PAER208963:0:Tyes3-034432
PAER208964:0:Tno33034432
PARS340102:0:Tyes-------0
PATL342610:0:Tyes--0122-0
PCAR338963:0:Tyes-----0--
PCRY335284:1:Tyes1-210012
PENT384676:0:Tyes11510015
PFLU205922:0:Tyes11510015
PFLU216595:1:Tyes11610016
PFLU220664:0:Tyes31093109510015
PFUR186497:0:Tyes0-------
PHAL326442:1:Tyes--012210
PHOR70601:0:Tyes629-0----0
PING357804:0:Tyes1737-1519152015210-1519
PLUM243265:0:Fyes1-233823392340210
PLUT319225:0:Tyes-----0--
PMAR167542:0:Tyes---0----
PMAR167555:0:Tyes0-------
PMAR59920:0:Tno0-------
PMEN399739:0:Tyes11210016
PMOB403833:0:Tyes0--0--0-
PMUL272843:1:Tyes11675676677210
PNAP365044:8:Tyes0--0110-
PPRO298386:2:Tyes--0122-0
PPUT160488:0:Tno13565510015
PPUT351746:0:Tyes11510015
PPUT76869:0:Tno11510015
PSP296591:2:Tyes26600266426602661266126602664
PSP56811:2:Tyes1-012210
PSYR205918:0:Tyes15710156715711572157215711568
PSYR223283:2:Tyes19560195119561957195719561953
PTHE370438:0:Tyes--0----0
RCAS383372:0:Tyes-6-1001-
RETL347834:3:Tyes-0------
RETL347834:5:Tyes3224-012210
REUT264198:3:Tyes11-110301102-2
REUT381666:1:Tyes------0-
REUT381666:2:Tyes111175117400-2
RFER338969:1:Tyes41155043340
RLEG216596:6:Tyes11012210
RMET266264:1:Tyes----1-0-
RMET266264:2:Tyes1101738-1737-0
RPAL258594:0:Tyes2550-255232-0-
RPAL316056:0:Tyes-0----0-
RPAL316057:0:Tyes00----0-
RPAL316058:0:Tyes38491009-38490-1009-
RPOM246200:1:Tyes327013123273283283271312
RRUB269796:1:Tyes11012210
RSOL267608:1:Tyes1101-151310
RSP357808:0:Tyes-0------
RSPH272943:3:Tyes11012210
RSPH349101:1:Tno11012210
RSPH349102:4:Tyes11012210
RXYL266117:0:Tyes1125980012
SACI56780:0:Tyes----00--
SARE391037:0:Tyes13821382-11383138310
SAUR158878:1:Tno-0------
SAUR158879:1:Tno-0------
SAUR196620:0:Tno-0------
SAUR273036:0:Tno-0------
SAUR282458:0:Tno-0------
SAUR282459:0:Tno-0------
SAUR359786:1:Tno-0------
SAUR359787:1:Tno-0------
SAUR367830:3:Tno-0------
SAUR418127:0:Tyes-0------
SAUR426430:0:Tno-0------
SAUR93061:0:Fno-0------
SBAL399599:3:Tyes--2100-2
SBAL402882:1:Tno--2100-2
SBOY300268:1:Tyes798098598698726732674985
SCO:2:Fyes-0-0-1--
SDEN318161:0:Tyes--012--0
SDYS300267:1:Tyes35540835836595355335543555
SELO269084:0:Tyes--0-----
SENT209261:0:Tno2193426017219421932192
SENT220341:0:Tno29780428427419297929782977
SENT295319:0:Tno2215686760221422152216
SENT321314:2:Tno27530847848849275227532754
SENT454169:2:Tno28650876877878286428652866
SEPI176279:1:Tyes-0------
SEPI176280:0:Tno-0------
SERY405948:0:Tyes11003-1--10
SFLE198214:0:Tyes26740499498497267326742675
SFLE373384:0:Tno2588047147046986925882587
SGLO343509:3:Tyes11148914901493210
SHAE279808:0:Tyes-0------
SHAL458817:0:Tyes--0122-0
SHIGELLA:0:Tno29590506505504296029592958
SLAC55218:1:Fyes13214310013
SLOI323850:0:Tyes--012210
SMAR399550:0:Tyes-----0--
SMED366394:3:Tyes12497012210
SMEL266834:2:Tyes17092272012210
SONE211586:1:Tyes--2100-2
SPEA398579:0:Tno--012210
SPRO399741:1:Tyes22611458254225432544103358
SSAP342451:2:Tyes-0------
SSED425104:0:Tyes--210012
SSON300269:1:Tyes7830973974975288328822881
SSP292414:1:Tyes----0---
SSP292414:2:Tyes2721269126921-012692
SSP387093:0:Tyes---0----
SSP644076:2:Fyes----0---
SSP644076:3:Fyes-0-88----
SSP644076:6:Fyes34-0--5025030
SSP94122:1:Tyes--0122-0
STHE292459:0:Tyes12291578123001228122812291230
STRO369723:0:Tyes11453-11454145410
STYP99287:1:Tyes27590830831832275827592760
TCRU317025:0:Tyes00-0--0-
TELO197221:0:Tyes0-------
TERY203124:0:Tyes0-------
TLET416591:0:Tyes79713013179727987970
TMAR243274:0:Tyes0010--01
TPET390874:0:Tno11-1--10
TPSE340099:0:Tyes--0-----
TROS309801:0:Tyes--0-2--0
TROS309801:1:Tyes575242-0-1575-
TSP28240:0:Tyes1101--10
TTEN273068:0:Tyes0-10--01
TTHE262724:1:Tyes11012210
TTHE300852:2:Tyes11013012-0
TTUR377629:0:Tyes-0------
UMET351160:0:Tyes1--1-01-
VCHO:0:Tyes--1541154215430-1541
VCHO345073:1:Tno--0121217-0
VEIS391735:1:Tyes27973267279827972122027973266
VFIS312309:1:Tyes--2100-2
VPAR223926:1:Tyes--1159115811570-1159
VVUL196600:2:Tyes--1389138813870-1389
VVUL216895:1:Tno--1697169816990-1697
XAUT78245:1:Tyes00----0-
YENT393305:1:Tyes0-156615671568348934903491
YPES187410:5:Tno0-124512441243311231103109
YPES214092:3:Tno1042-012160116021603
YPES349746:2:Tno1465-0121482-1481
YPES360102:3:Tyes1263-012215421552156
YPES377628:2:Tno1870-012186918701871
YPES386656:2:Tno2585-210258425852586
YPSE273123:2:Tno1568-012156715681569
YPSE349747:2:Tno2264-210226322642265



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