CANDIDATE ID: 85

CANDIDATE ID: 85

NUMBER OF GENES: 8
AVERAGE SCORE:    9.9965514e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    6.2500000e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- EG11893 (dacD) (b2010)
   Products of gene:
     - RPOA-MONOMER (DD-carboxypeptidase, penicillin-binding protein 6b)
       Reactions:
        a lipid II + H2O  =  a N-acetylglucosamine--N-acetylmuramyl-(tetrapeptide) pyrophosphoryl-undecaprenol + D-alanine

- EG11592 (ybeD) (b0631)
   Products of gene:
     - EG11592-MONOMER (conserved protein)

- EG11591 (lipB) (b0630)
   Products of gene:
     - EG11591-MONOMER (lipoyl-protein ligase)
       Reactions:
        an apo-GcvH protein + a lipoyl-[acp]  =  H-Gcv-protein-(lipoyl)lysine + a holo-[acp]
        SucB + lipoyl-ACP  =  SucB-lipoate + a holo-[acp]
        lipoate acetyltransferase / dihydrolipoamide acetyltransferase + lipoyl-ACP  =  AceF-lipoate + a holo-[acp]
        an octanoyl-[acp] + a non-lipoylated protein-lipoyl domain  ->  an octanoylated protein lipoyl-domain + a holo-[acp]
         In pathways
         PWY0-501 (lipoate biosynthesis and incorporation I)

- EG11306 (lipA) (b0628)
   Products of gene:
     - EG11306-MONOMER (lipoate synthase monomer)
     - CPLX0-782 (lipoate synthase)
       Reactions:
        an octanoylated protein lipoyl-domain + 2 S-adenosyl-L-methionine + 2 S2-  ->  a lipoylated protein lipoyl-domain + 2 5'-deoxyadenosine + 2 L-methionine
         In pathways
         PWY0-1275 (lipoate biosynthesis and incorporation II)
         PWY0-501 (lipoate biosynthesis and incorporation I)

- EG10854 (rlpA) (b0633)
   Products of gene:
     - EG10854-MONOMER (rare lipoprotein RlpA)

- EG10607 (mrdB) (b0634)
   Products of gene:
     - EG10607-MONOMER (rod shape-determining membrane protein; sensitivity to radiation and drugs)

- EG10203 (dacC) (b0839)
   Products of gene:
     - EG10203-MONOMER (penicillin-binding protein 6)
       Reactions:
        a lipid II + H2O  =  a N-acetylglucosamine--N-acetylmuramyl-(tetrapeptide) pyrophosphoryl-undecaprenol + D-alanine

- EG10201 (dacA) (b0632)
   Products of gene:
     - EG10201-MONOMER (D-alanyl-D-alanine carboxypeptidase, fraction A; penicillin-binding protein 5)
       Reactions:
        a beta-lactam + H2O  ->  a substituted beta-amino acid
        a lipid II + H2O  =  a N-acetylglucosamine--N-acetylmuramyl-(tetrapeptide) pyrophosphoryl-undecaprenol + D-alanine



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ORGANISMS CONTAINING AT LEAST 7 GENES FROM THE GROUP:

Total number of orgs: 187
Effective number of orgs (counting one per cluster within 468 clusters): 123

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM47
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317588
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329538
YPES386656 ncbi Yersinia pestis Pestoides F8
YPES377628 ncbi Yersinia pestis Nepal5168
YPES360102 ncbi Yersinia pestis Antiqua8
YPES349746 ncbi Yersinia pestis Angola8
YPES214092 ncbi Yersinia pestis CO928
YPES187410 ncbi Yersinia pestis KIM 108
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80818
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A7
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110187
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103317
XFAS405440 ncbi Xylella fastidiosa M127
XFAS183190 ncbi Xylella fastidiosa Temecula17
XFAS160492 ncbi Xylella fastidiosa 9a5c7
XCAM487884 Xanthomonas campestris pv. paulliniae7
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-107
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80047
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339137
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3067
WPIP955 Wolbachia pipientis7
WPIP80849 Wolbachia endosymbiont of Brugia malayi7
VVUL216895 ncbi Vibrio vulnificus CMCP68
VVUL196600 ncbi Vibrio vulnificus YJ0168
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106338
VFIS312309 ncbi Vibrio fischeri ES1148
VEIS391735 ncbi Verminephrobacter eiseniae EF01-27
VCHO345073 ncbi Vibrio cholerae O3958
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169618
TTUR377629 ncbi Teredinibacter turnerae T79018
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252598
TCRU317025 ncbi Thiomicrospira crunogena XCL-27
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT28
SSP94122 ncbi Shewanella sp. ANA-38
SSON300269 ncbi Shigella sonnei Ss0468
SSED425104 ncbi Shewanella sediminis HAW-EB38
SPRO399741 ncbi Serratia proteamaculans 5688
SPEA398579 ncbi Shewanella pealeana ATCC 7003458
SONE211586 ncbi Shewanella oneidensis MR-18
SLOI323850 ncbi Shewanella loihica PV-48
SHIGELLA ncbi Shigella flexneri 2a str. 2457T8
SHAL458817 ncbi Shewanella halifaxensis HAW-EB48
SGLO343509 ncbi Sodalis glossinidius morsitans7
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB7
SFLE373384 ncbi Shigella flexneri 5 str. 84018
SFLE198214 ncbi Shigella flexneri 2a str. 3018
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4768
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B678
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91508
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT188
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty28
SDYS300267 ncbi Shigella dysenteriae Sd1978
SDEN318161 ncbi Shewanella denitrificans OS2178
SDEG203122 ncbi Saccharophagus degradans 2-408
SBOY300268 ncbi Shigella boydii Sb2278
SBAL402882 ncbi Shewanella baltica OS1858
SBAL399599 ncbi Shewanella baltica OS1958
RSOL267608 ncbi Ralstonia solanacearum GMI10008
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111707
RMET266264 ncbi Ralstonia metallidurans CH348
RFER338969 ncbi Rhodoferax ferrireducens T1187
REUT381666 ncbi Ralstonia eutropha H168
REUT264198 ncbi Ralstonia eutropha JMP1348
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30007
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a7
PSTU379731 ncbi Pseudomonas stutzeri A15018
PSP56811 Psychrobacter sp.7
PSP296591 ncbi Polaromonas sp. JS6668
PPUT76869 ncbi Pseudomonas putida GB-17
PPUT351746 ncbi Pseudomonas putida F17
PPUT160488 ncbi Pseudomonas putida KT24407
PPRO298386 ncbi Photobacterium profundum SS98
PNAP365044 ncbi Polaromonas naphthalenivorans CJ28
PMUL272843 ncbi Pasteurella multocida multocida Pm708
PMEN399739 ncbi Pseudomonas mendocina ymp8
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO18
PING357804 ncbi Psychromonas ingrahamii 378
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1258
PFLU220664 ncbi Pseudomonas fluorescens Pf-57
PFLU216595 ncbi Pseudomonas fluorescens SBW257
PFLU205922 ncbi Pseudomonas fluorescens Pf0-17
PENT384676 ncbi Pseudomonas entomophila L487
PCRY335284 ncbi Psychrobacter cryohalolentis K57
PATL342610 ncbi Pseudoalteromonas atlantica T6c8
PARC259536 ncbi Psychrobacter arcticus 273-48
PAER208964 ncbi Pseudomonas aeruginosa PAO18
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA148
NMUL323848 ncbi Nitrosospira multiformis ATCC 251968
NMEN374833 ncbi Neisseria meningitidis 0534427
NMEN272831 ncbi Neisseria meningitidis FAM187
NMEN122587 ncbi Neisseria meningitidis Z24917
NMEN122586 ncbi Neisseria meningitidis MC587
NGON242231 ncbi Neisseria gonorrhoeae FA 10907
NEUT335283 ncbi Nitrosomonas eutropha C918
NEUR228410 ncbi Nitrosomonas europaea ATCC 197188
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124447
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E8
MSP400668 ncbi Marinomonas sp. MWYL17
MPET420662 ncbi Methylibium petroleiphilum PM17
MMAR394221 ncbi Maricaulis maris MCS107
MMAG342108 ncbi Magnetospirillum magneticum AMB-17
MFLA265072 ncbi Methylobacillus flagellatus KT8
MCAP243233 ncbi Methylococcus capsulatus Bath8
MAQU351348 ncbi Marinobacter aquaeolei VT88
LPNE400673 ncbi Legionella pneumophila Corby7
LPNE297246 ncbi Legionella pneumophila Paris7
LPNE297245 ncbi Legionella pneumophila Lens7
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 17
LCHO395495 ncbi Leptothrix cholodnii SP-68
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785788
JSP375286 ncbi Janthinobacterium sp. Marseille8
ILOI283942 ncbi Idiomarina loihiensis L2TR8
HSOM205914 ncbi Haemophilus somnus 129PT8
HNEP81032 Hyphomonas neptunium7
HINF71421 ncbi Haemophilus influenzae Rd KW208
HINF374930 ncbi Haemophilus influenzae PittEE8
HINF281310 ncbi Haemophilus influenzae 86-028NP8
HHAL349124 ncbi Halorhodospira halophila SL18
HDUC233412 ncbi Haemophilus ducreyi 35000HP8
HCHE349521 ncbi Hahella chejuensis KCTC 23967
HARS204773 ncbi Herminiimonas arsenicoxydans8
GOXY290633 ncbi Gluconobacter oxydans 621H7
GBET391165 ncbi Granulibacter bethesdensis CGDNIH17
ESP42895 Enterobacter sp.8
EFER585054 ncbi Escherichia fergusonii ATCC 354698
ECOO157 ncbi Escherichia coli O157:H7 EDL9338
ECOL83334 Escherichia coli O157:H78
ECOL585397 ncbi Escherichia coli ED1a8
ECOL585057 ncbi Escherichia coli IAI398
ECOL585056 ncbi Escherichia coli UMN0268
ECOL585055 ncbi Escherichia coli 559898
ECOL585035 ncbi Escherichia coli S888
ECOL585034 ncbi Escherichia coli IAI18
ECOL481805 ncbi Escherichia coli ATCC 87398
ECOL469008 ncbi Escherichia coli BL21(DE3)8
ECOL439855 ncbi Escherichia coli SMS-3-58
ECOL413997 ncbi Escherichia coli B str. REL6068
ECOL409438 ncbi Escherichia coli SE118
ECOL405955 ncbi Escherichia coli APEC O18
ECOL364106 ncbi Escherichia coli UTI898
ECOL362663 ncbi Escherichia coli 5368
ECOL331111 ncbi Escherichia coli E24377A8
ECOL316407 ncbi Escherichia coli K-12 substr. W31108
ECOL199310 ncbi Escherichia coli CFT0738
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10438
DNOD246195 ncbi Dichelobacter nodosus VCS1703A7
DARO159087 ncbi Dechloromonas aromatica RCB8
CVIO243365 ncbi Chromobacterium violaceum ATCC 124728
CSAL290398 ncbi Chromohalobacter salexigens DSM 30438
CPSY167879 ncbi Colwellia psychrerythraea 34H8
CJAP155077 Cellvibrio japonicus8
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1118
CBUR360115 ncbi Coxiella burnetii RSA 3318
CBUR227377 ncbi Coxiella burnetii RSA 4938
BVIE269482 ncbi Burkholderia vietnamiensis G48
BTHA271848 ncbi Burkholderia thailandensis E2648
BSP36773 Burkholderia sp.8
BPSE320373 ncbi Burkholderia pseudomallei 6687
BPSE320372 ncbi Burkholderia pseudomallei 1710b8
BPSE272560 ncbi Burkholderia pseudomallei K962438
BPET94624 Bordetella petrii8
BPER257313 ncbi Bordetella pertussis Tohama I8
BPAR257311 ncbi Bordetella parapertussis 128228
BMAL320389 ncbi Burkholderia mallei NCTC 102478
BMAL320388 ncbi Burkholderia mallei SAVP18
BMAL243160 ncbi Burkholderia mallei ATCC 233448
BCEN331272 ncbi Burkholderia cenocepacia HI24248
BCEN331271 ncbi Burkholderia cenocepacia AU 10548
BBRO257310 ncbi Bordetella bronchiseptica RB508
BAMB398577 ncbi Burkholderia ambifaria MC40-68
BAMB339670 ncbi Burkholderia ambifaria AMMD8
ASP76114 ncbi Aromatoleum aromaticum EbN18
ASP62977 ncbi Acinetobacter sp. ADP18
ASP62928 ncbi Azoarcus sp. BH728
ASP232721 ncbi Acidovorax sp. JS428
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4498
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL038
APLE416269 ncbi Actinobacillus pleuropneumoniae L208
AMAR234826 ncbi Anaplasma marginale St. Maries7
AHYD196024 Aeromonas hydrophila dhakensis8
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232707
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-17
ACRY349163 ncbi Acidiphilium cryptum JF-57
ABOR393595 ncbi Alcanivorax borkumensis SK27
ABAU360910 ncbi Bordetella avium 197N8
AAVE397945 ncbi Acidovorax citrulli AAC00-18


Names of the homologs of the genes in the group in each of these orgs
  EG11893   EG11592   EG11591   EG11306   EG10854   EG10607   EG10203   EG10201   
ZMOB264203 ZMO1089ZMO1302ZMO1132ZMO1088ZMO0360ZMO1089ZMO1089
YPSE349747 YPSIP31758_2952YPSIP31758_2953YPSIP31758_2954YPSIP31758_2955YPSIP31758_2951YPSIP31758_2950YPSIP31758_2659YPSIP31758_2952
YPSE273123 YPTB1094YPTB1093YPTB1092YPTB1091YPTB1095YPTB1096YPTB1351YPTB1351
YPES386656 YPDSF_2652YPDSF_2653YPDSF_2654YPDSF_2655YPDSF_2651YPDSF_2650YPDSF_2376YPDSF_2652
YPES377628 YPN_1086YPN_1085YPN_1084YPN_1083YPN_1087YPN_1088YPN_2659YPN_2659
YPES360102 YPA_2498YPA_2499YPA_2500YPA_2501YPA_2495YPA_2494YPA_2498YPA_2498
YPES349746 YPANGOLA_A1852YPANGOLA_A1853YPANGOLA_A1854YPANGOLA_A1855YPANGOLA_A1851YPANGOLA_A1850YPANGOLA_A1549YPANGOLA_A1852
YPES214092 YPO2601YPO2600YPO2599YPO2598YPO2602YPO2603YPO1320YPO2601
YPES187410 Y1175Y1174Y1173Y1171Y1176Y1177Y2864Y1175
YENT393305 YE3005YE3006YE3007YE3008YE3004YE3003YE1471YE3005
XORY360094 XOOORF_0937XOOORF_0940XOOORF_0941XOOORF_0935XOOORF_0925XOOORF_0937XOOORF_0937
XORY342109 XOO3734XOO3731XOO3730XOO3735XOO3744XOO3734XOO3734
XORY291331 XOO3956XOO3953XOO3952XOO3957XOO3967XOO3956XOO3956
XFAS405440 XFASM12_1430XFASM12_0600XFASM12_0599XFASM12_1386XFASM12_0672XFASM12_1430XFASM12_1430
XFAS183190 PD_1277PD_0531PD_0530PD_1236PD_0561PD_1277PD_1277
XFAS160492 XF2230XF1270XF1269XF2185XF1313XF2230XF2230
XCAM487884 XCC-B100_0741XCC-B100_0744XCC-B100_0745XCC-B100_0740XCC-B100_0728XCC-B100_0741XCC-B100_0741
XCAM316273 XCAORF_3796XCAORF_3792XCAORF_3791XCAORF_3797XCAORF_3802XCAORF_3796XCAORF_3796
XCAM314565 XC_0708XC_0712XC_0713XC_0707XC_0695XC_0708XC_0708
XCAM190485 XCC3456XCC3452XCC3451XCC3457XCC3466XCC3456XCC3456
XAXO190486 XAC0664XAC0667XAC0668XAC0663XAC0660XAC0664XAC0664
WPIP955 WD_0098WD_1014WD_0392WD_0496WD_1108WD_0098WD_0098
WPIP80849 WB_0447WB_0369WB_0469WB_0192WB_0023WB_0447WB_0447
VVUL216895 VV1_0281VV1_0282VV1_0283VV1_0284VV1_0280VV1_0279VV1_0281VV1_0281
VVUL196600 VV0903VV0902VV0901VV0900VV0904VV0905VV0903VV0903
VPAR223926 VP0719VP0718VP0717VP0716VP0720VP0721VP0719VP0719
VFIS312309 VF0745VF0744VF0743VF0742VF0746VF0747VF0745VF0745
VEIS391735 VEIS_1254VEIS_0472VEIS_0471VEIS_0470VEIS_2191VEIS_1254VEIS_1254
VCHO345073 VC0395_A0470VC0395_A0469VC0395_A0468VC0395_A0467VC0395_A0471VC0395_A0472VC0395_A0470VC0395_A0470
VCHO VC0947VC0945VC0944VC0943VC0948VC0949VC0947VC0947
TTUR377629 TERTU_0608TERTU_0609TERTU_0610TERTU_0611TERTU_0606TERTU_0604TERTU_0608TERTU_0608
TDEN292415 TBD_0647TBD_0268TBD_0269TBD_0274TBD_0265TBD_0264TBD_0647TBD_0647
TCRU317025 TCR_1635TCR_1637TCR_1638TCR_1639TCR_1634TCR_1635TCR_1635
STYP99287 STM2062STM0636STM0635STM0633STM0638STM0639STM0863STM0637
SSP94122 SHEWANA3_0991SHEWANA3_0990SHEWANA3_0989SHEWANA3_0988SHEWANA3_0992SHEWANA3_0994SHEWANA3_0991SHEWANA3_0991
SSON300269 SSO_2080SSO_0585SSO_0584SSO_0582SSO_0587SSO_0588SSO_0586SSO_0586
SSED425104 SSED_3489SSED_3490SSED_3491SSED_3492SSED_3488SSED_3486SSED_3489SSED_3489
SPRO399741 SPRO_2636SPRO_1197SPRO_1196SPRO_1195SPRO_1199SPRO_1200SPRO_1628SPRO_1628
SPEA398579 SPEA_3153SPEA_3154SPEA_3155SPEA_3156SPEA_3152SPEA_3150SPEA_3153SPEA_3153
SONE211586 SO_1164SO_1163SO_1162SO_1161SO_1165SO_1167SO_1164SO_1164
SLOI323850 SHEW_2939SHEW_2940SHEW_2941SHEW_2942SHEW_2938SHEW_2936SHEW_2939SHEW_2939
SHIGELLA DACAYBEDLIPBLIPARLPAMRDBDACADACA
SHAL458817 SHAL_3238SHAL_3239SHAL_3240SHAL_3241SHAL_3237SHAL_3235SHAL_3238SHAL_3238
SGLO343509 SG0795SG0794SG0793SG0792SG0796SG0921SG0795
SFUM335543 SFUM_1305SFUM_1675SFUM_2644SFUM_3300SFUM_2588SFUM_1305SFUM_1305
SFLE373384 SFV_0694SFV_0695SFV_0696SFV_0698SFV_0693SFV_0692SFV_0694SFV_0694
SFLE198214 AAN42285.1AAN42286.1AAN42287.1AAN42289.1AAN42284.1AAN42283.1AAN42422.1AAN42285.1
SENT454169 SEHA_C2285SEHA_C0752SEHA_C0751SEHA_C0748SEHA_C0754SEHA_C0755SEHA_C0996SEHA_C0753
SENT321314 SCH_2071SCH_0665SCH_0664SCH_0662SCH_0668SCH_0669SCH_0857SCH_0666
SENT295319 SPA2097SPA2098SPA2099SPA2101SPA2096SPA2095SPA1899SPA2097
SENT220341 STY0688STY0687STY0686STY0683STY0689STY0690STY0896STY0688
SENT209261 T2230T2231T2232T2234T2229T2228T2033T2230
SDYS300267 SDY_2233SDY_0553SDY_0552SDY_0550SDY_0555SDY_0556SDY_0841SDY_0554
SDEN318161 SDEN_0851SDEN_0869SDEN_0868SDEN_0867SDEN_0852SDEN_0854SDEN_0851SDEN_0851
SDEG203122 SDE_3337SDE_3336SDE_3335SDE_3334SDE_3338SDE_3340SDE_3337SDE_3337
SBOY300268 SBO_0496SBO_0495SBO_0494SBO_0492SBO_0497SBO_0498SBO_0496SBO_0496
SBAL402882 SHEW185_3321SHEW185_3322SHEW185_3323SHEW185_3324SHEW185_3320SHEW185_3318SHEW185_3321SHEW185_3321
SBAL399599 SBAL195_3457SBAL195_3458SBAL195_3459SBAL195_3460SBAL195_3456SBAL195_3454SBAL195_3457SBAL195_3457
RSOL267608 RSC0327RSC0326RSC0323RSC0322RSC3267RSC0063RSC0327RSC0327
RRUB269796 RRU_A1704RRU_A1996RRU_A1877RRU_A1705RRU_A3679RRU_A1704RRU_A1704
RMET266264 RMET_0225RMET_0224RMET_0060RMET_0061RMET_3432RMET_0055RMET_0225RMET_0225
RFER338969 RFER_0920RFER_3936RFER_3935RFER_3934RFER_3371RFER_0920RFER_0920
REUT381666 H16_A0302H16_A0303H16_A0122H16_A0123H16_A3581H16_A0117H16_A0302H16_A0302
REUT264198 REUT_A0280REUT_A0281REUT_A0085REUT_A0086REUT_A3267REUT_A0080REUT_A0280REUT_A0280
PSYR223283 PSPTO_4821PSPTO_4819PSPTO_4818PSPTO_4822PSPTO_4824PSPTO_4821PSPTO_4821
PSYR205918 PSYR_4361PSYR_4359PSYR_4358PSYR_4362PSYR_4364PSYR_4361PSYR_4361
PSTU379731 PST_3777PST_3776PST_3775PST_3774PST_3778PST_3780PST_3777PST_3777
PSP56811 PSYCPRWF_1758PSYCPRWF_1380PSYCPRWF_0899PSYCPRWF_0831PSYCPRWF_1786PSYCPRWF_1758PSYCPRWF_1758
PSP296591 BPRO_0250BPRO_0316BPRO_0314BPRO_0313BPRO_4129BPRO_1091BPRO_0250BPRO_0250
PPUT76869 PPUTGB1_4856PPUTGB1_4854PPUTGB1_4853PPUTGB1_4857PPUTGB1_4859PPUTGB1_4856PPUTGB1_4856
PPUT351746 PPUT_4678PPUT_4676PPUT_4675PPUT_4679PPUT_4681PPUT_4678PPUT_4678
PPUT160488 PP_4803PP_4801PP_4800PP_4804PP_4806PP_4803PP_4803
PPRO298386 PBPRA2893PBPRA2894PBPRA2895PBPRA2896PBPRA2892PBPRA2891PBPRA2893PBPRA2893
PNAP365044 PNAP_0197PNAP_0245PNAP_0243PNAP_0242PNAP_0492PNAP_3400PNAP_0197PNAP_0197
PMUL272843 PM1927PM1928PM1929PM1930PM1926PM1925PM1927PM1927
PMEN399739 PMEN_3794PMEN_3793PMEN_3792PMEN_3791PMEN_3795PMEN_3797PMEN_3794PMEN_3794
PLUM243265 PLU1294PLU1293PLU1292PLU1291PLU1295PLU1296PLU1573PLU1294
PING357804 PING_3027PING_3028PING_3029PING_3030PING_1133PING_1134PING_3027PING_3027
PHAL326442 PSHAA1022PSHAA1021PSHAA1020PSHAA1019PSHAA1023PSHAA1024PSHAA1022PSHAA1022
PFLU220664 PFL_5448PFL_5446PFL_5445PFL_5449PFL_5451PFL_5448PFL_5448
PFLU216595 PFLU5419PFLU5417PFLU5416PFLU5420PFLU5422PFLU5419PFLU5419
PFLU205922 PFL_4966PFL_4964PFL_4963PFL_0834PFL_4969PFL_4966PFL_4966
PENT384676 PSEEN4822PSEEN4820PSEEN4819PSEEN4823PSEEN4825PSEEN4822PSEEN4822
PCRY335284 PCRYO_0658PCRYO_1084PCRYO_0744PCRYO_1486PCRYO_1485PCRYO_0658PCRYO_0658
PATL342610 PATL_1556PATL_1555PATL_1554PATL_1553PATL_1557PATL_1559PATL_1556PATL_1556
PARC259536 PSYC_0687PSYC_1262PSYC_1295PSYC_0749PSYC_0928PSYC_0929PSYC_0687PSYC_0687
PAER208964 PA3999PA3998PA3997PA3996PA4000PA4002PA3999PA3999
PAER208963 PA14_12100PA14_12110PA14_12120PA14_12130PA14_12090PA14_12070PA14_12100PA14_12100
NMUL323848 NMUL_A1991NMUL_A1989NMUL_A1988NMUL_A1987NMUL_A0315NMUL_A0316NMUL_A1991NMUL_A1991
NMEN374833 NMCC_0839NMCC_1098NMCC_1096NMCC_1095NMCC_1878NMCC_0839NMCC_0839
NMEN272831 NMC0818NMC1112NMC1111NMC1110NMC0261NMC0818NMC0818
NMEN122587 NMA1095NMA1380NMA1379NMA1378NMA2219NMA1095NMA1095
NMEN122586 NMB_0877NMB_1218NMB_1217NMB_1216NMB_0267NMB_0877NMB_0877
NGON242231 NGO0443NGO0791NGO0792NGO0793NGO1728NGO0443NGO0443
NEUT335283 NEUT_0761NEUT_0759NEUT_0758NEUT_0757NEUT_1587NEUT_1588NEUT_0761NEUT_0761
NEUR228410 NE1485NE1487NE1488NE1489NE2065NE2066NE1485NE1485
NARO279238 SARO_1942SARO_0094SARO_1921SARO_1943SARO_2132SARO_1942SARO_1942
MSUC221988 MS1829MS1828MS1827MS1826MS1830MS1831MS1829MS1829
MSP400668 MMWYL1_2844MMWYL1_2842MMWYL1_2841MMWYL1_2845MMWYL1_2847MMWYL1_2844MMWYL1_2844
MPET420662 MPE_A0311MPE_A0315MPE_A1598MPE_A3528MPE_A0079MPE_A0311MPE_A0311
MMAR394221 MMAR10_1455MMAR10_1745MMAR10_1436MMAR10_1456MMAR10_2013MMAR10_1455MMAR10_1455
MMAG342108 AMB2451AMB0721AMB2322AMB2452AMB3517AMB2451AMB2451
MFLA265072 MFLA_2497MFLA_2499MFLA_2500MFLA_2501MFLA_2496MFLA_2495MFLA_2497MFLA_2497
MCAP243233 MCA_0105MCA_0107MCA_0109MCA_0110MCA_2972MCA_0104MCA_0105MCA_0105
MAQU351348 MAQU_2410MAQU_2409MAQU_2408MAQU_2373MAQU_2411MAQU_2412MAQU_2410MAQU_2410
LPNE400673 LPC_0928LPC_0931LPC_2548LPC_0927LPC_0790LPC_0928LPC_0928
LPNE297246 LPP1466LPP1469LPP0810LPP1465LPP1328LPP1466LPP1466
LPNE297245 LPL1517LPL1514LPL0781LPL1518LPL1325LPL1517LPL1517
LPNE272624 LPG1509LPG1511LPG0745LPG1508LPG1374LPG1509LPG1509
LCHO395495 LCHO_4237LCHO_4239LCHO_0400LCHO_0401LCHO_1244LCHO_0500LCHO_4237LCHO_4237
KPNE272620 GKPORF_B1730GKPORF_B5087GKPORF_B5086GKPORF_B5084GKPORF_B5089GKPORF_B5090GKPORF_B5308GKPORF_B5088
JSP375286 MMA_3248MMA_3250MMA_3251MMA_3252MMA_0201MMA_0200MMA_3248MMA_3248
ILOI283942 IL0957IL0958IL0959IL0960IL0956IL0954IL0957IL0957
HSOM205914 HS_0318HS_0317HS_0316HS_0315HS_0319HS_0320HS_0318HS_0318
HNEP81032 HNE_1814HNE_1062HNE_2021HNE_1815HNE_2933HNE_1814HNE_1814
HINF71421 HI_0029HI_0028HI_0027HI_0026HI_0030HI_0031HI_0029HI_0029
HINF374930 CGSHIEE_03165CGSHIEE_03170CGSHIEE_03175CGSHIEE_03180CGSHIEE_03160CGSHIEE_03155CGSHIEE_03165CGSHIEE_03165
HINF281310 NTHI0036NTHI0035NTHI0034NTHI0033NTHI0037NTHI0038NTHI0036NTHI0036
HHAL349124 HHAL_1012HHAL_1014HHAL_1015HHAL_0116HHAL_1011HHAL_1009HHAL_1012HHAL_1012
HDUC233412 HD_2016HD_2015HD_2013HD_2012HD_2017HD_2019HD_2016HD_2016
HCHE349521 HCH_05839HCH_05837HCH_05836HCH_05840HCH_05842HCH_05839HCH_05839
HARS204773 HEAR2999HEAR3001HEAR3002HEAR3003HEAR0173HEAR0172HEAR2999HEAR2999
GOXY290633 GOX0019GOX0046GOX2293GOX0438GOX1741GOX0019GOX0019
GBET391165 GBCGDNIH1_1072GBCGDNIH1_0587GBCGDNIH1_1188GBCGDNIH1_1071GBCGDNIH1_1466GBCGDNIH1_1072GBCGDNIH1_1072
ESP42895 ENT638_2578ENT638_1166ENT638_1165ENT638_1163ENT638_1168ENT638_1169ENT638_1330ENT638_1167
EFER585054 EFER_2473EFER_2474EFER_2475EFER_2476EFER_2472EFER_2471EFER_0980EFER_2473
ECOO157 DACDYBEDLIPBLIPARLPAMRDBDACCDACA
ECOL83334 ECS2812ECS0669ECS0668ECS0666ECS0671ECS0672ECS0919ECS0670
ECOL585397 ECED1_2361ECED1_0627ECED1_0626ECED1_0624ECED1_0630ECED1_0631ECED1_0803ECED1_0628
ECOL585057 ECIAI39_1006ECIAI39_0606ECIAI39_0605ECIAI39_0603ECIAI39_0608ECIAI39_0609ECIAI39_0818ECIAI39_0607
ECOL585056 ECUMN_2356ECUMN_0724ECUMN_0723ECUMN_0720ECUMN_0727ECUMN_0728ECUMN_1029ECUMN_0725
ECOL585055 EC55989_2269EC55989_0623EC55989_0622EC55989_0620EC55989_0625EC55989_0626EC55989_0884EC55989_0624
ECOL585035 ECS88_2109ECS88_0672ECS88_0671ECS88_0669ECS88_0675ECS88_0676ECS88_0856ECS88_0673
ECOL585034 ECIAI1_2080ECIAI1_0614ECIAI1_0613ECIAI1_0611ECIAI1_0617ECIAI1_0618ECIAI1_0878ECIAI1_0615
ECOL481805 ECOLC_1630ECOLC_3014ECOLC_3015ECOLC_3017ECOLC_3012ECOLC_3011ECOLC_2803ECOLC_3013
ECOL469008 ECBD_1647ECBD_3020ECBD_3021ECBD_3023ECBD_3018ECBD_3017ECBD_2784ECBD_3019
ECOL439855 ECSMS35_1051ECSMS35_0651ECSMS35_0650ECSMS35_0648ECSMS35_0653ECSMS35_0654ECSMS35_0866ECSMS35_0652
ECOL413997 ECB_01913ECB_00600ECB_00599ECB_00597ECB_00602ECB_00603ECB_00806ECB_00601
ECOL409438 ECSE_2283ECSE_0698ECSE_0697ECSE_0695ECSE_0701ECSE_0702ECSE_0897ECSE_0699
ECOL405955 APECO1_1108APECO1_1424APECO1_1425APECO1_1427APECO1_1422APECO1_1421APECO1_1254APECO1_1423
ECOL364106 UTI89_C0634UTI89_C0633UTI89_C0632UTI89_C0631UTI89_C0635UTI89_C0636UTI89_C0842UTI89_C0634
ECOL362663 ECP_2054ECP_0661ECP_0660ECP_0658ECP_0663ECP_0664ECP_0853ECP_0662
ECOL331111 ECE24377A_2301ECE24377A_0656ECE24377A_0655ECE24377A_0652ECE24377A_0658ECE24377A_0660ECE24377A_0910ECE24377A_0657
ECOL316407 ECK2004:JW5329:B2010ECK0624:JW0626:B0631ECK0623:JW5089:B0630ECK0621:JW0623:B0628ECK0626:JW0628:B0633ECK0627:JW0629:B0634ECK0829:JW0823:B0839ECK0625:JW0627:B0632
ECOL199310 C2538C0721C0720C0718C0724C0725C0924C0722
ECAR218491 ECA1300ECA1299ECA1298ECA1297ECA1301ECA1302ECA2686ECA1300
DNOD246195 DNO_0899DNO_0897DNO_0480DNO_0961DNO_0963DNO_0899DNO_0899
DARO159087 DARO_0291DARO_0289DARO_0288DARO_0287DARO_0111DARO_0112DARO_0291DARO_0291
CVIO243365 CV_3094CV_3095CV_3096CV_3097CV_4384CV_4361CV_3094CV_3094
CSAL290398 CSAL_1549CSAL_1550CSAL_1551CSAL_1552CSAL_1548CSAL_1546CSAL_1549CSAL_1549
CPSY167879 CPS_1712CPS_1711CPS_1710CPS_1709CPS_1713CPS_1714CPS_1712CPS_1712
CJAP155077 CJA_0793CJA_0795CJA_0796CJA_0797CJA_0792CJA_0790CJA_0793CJA_0793
CBUR434922 COXBU7E912_1345COXBU7E912_1346COXBU7E912_1350COXBU7E912_1351COXBU7E912_1060COXBU7E912_1514COXBU7E912_1345COXBU7E912_1345
CBUR360115 COXBURSA331_A1408COXBURSA331_A1409COXBURSA331_A1413COXBURSA331_A1414COXBURSA331_A0952COXBURSA331_A0663COXBURSA331_A1408COXBURSA331_A1408
CBUR227377 CBU_1261CBU_1262CBU_1265CBU_1266CBU_0987CBU_0549CBU_1261CBU_1261
BVIE269482 BCEP1808_2989BCEP1808_2987BCEP1808_2984BCEP1808_2983BCEP1808_0246BCEP1808_3198BCEP1808_2989BCEP1808_2989
BTHA271848 BTH_I0380BTH_I0382BTH_I0385BTH_I0386BTH_I3150BTH_I0142BTH_I0380BTH_I0380
BSP36773 BCEP18194_A6236BCEP18194_A6234BCEP18194_A6231BCEP18194_A6230BCEP18194_A3389BCEP18194_A6465BCEP18194_A6236BCEP18194_A6236
BPSE320373 BURPS668_0438BURPS668_0443BURPS668_0444BURPS668_3821BURPS668_0166BURPS668_0438BURPS668_0438
BPSE320372 BURPS1710B_A0662BURPS1710B_A0664BURPS1710B_A0667BURPS1710B_A0668BURPS1710B_A0047BURPS1710B_A0384BURPS1710B_A0662BURPS1710B_A0662
BPSE272560 BPSL0408BPSL0410BPSL0413BPSL0414BPSL3276BPSL0182BPSL0408BPSL0408
BPET94624 BPET3320BPET4805BPET4804BPET4803BPET0442BPET0431BPET4807BPET3320
BPER257313 BP0102BP0104BP0105BP0106BP0689BP0378BP0102BP0102
BPAR257311 BPP0166BPP0168BPP0169BPP0170BPP4039BPP4052BPP0166BPP0166
BMAL320389 BMA10247_3192BMA10247_3190BMA10247_3187BMA10247_3186BMA10247_2970BMA10247_2370BMA10247_3192BMA10247_3192
BMAL320388 BMASAVP1_A0224BMASAVP1_A0222BMASAVP1_A0219BMASAVP1_A0218BMASAVP1_A3399BMASAVP1_A2789BMASAVP1_A0224BMASAVP1_A0224
BMAL243160 BMA_0058BMA_0056BMA_0053BMA_0052BMA_2911BMA_0158BMA_0058BMA_0058
BCEN331272 BCEN2424_2893BCEN2424_2891BCEN2424_2888BCEN2424_2887BCEN2424_0286BCEN2424_3114BCEN2424_2893BCEN2424_2893
BCEN331271 BCEN_2278BCEN_2276BCEN_2273BCEN_2272BCEN_2820BCEN_2500BCEN_2278BCEN_2278
BBRO257310 BB0168BB0170BB0171BB0172BB4512BB4525BB0168BB0168
BAMB398577 BAMMC406_2805BAMMC406_2803BAMMC406_2800BAMMC406_2799BAMMC406_0214BAMMC406_3052BAMMC406_2805BAMMC406_2805
BAMB339670 BAMB_2943BAMB_2941BAMB_2938BAMB_2937BAMB_0200BAMB_3169BAMB_2943BAMB_2943
ASP76114 EBA3044EBD70EBA3048EBA3050EBA3043EBA3041EBA3044EBA3044
ASP62977 ACIAD1225ACIAD2926ACIAD2927ACIAD2275ACIAD2265ACIAD2263ACIAD1225ACIAD1225
ASP62928 AZO0180AZO0182AZO0183AZO0184AZO0179AZO0178AZO0180AZO0180
ASP232721 AJS_0272AJS_0300AJS_0299AJS_0298AJS_0622AJS_3647AJS_0272AJS_0272
ASAL382245 ASA_1058ASA_1057ASA_1056ASA_1054ASA_1059ASA_1061ASA_1058ASA_1058
APLE434271 APJL_1629APJL_1628APJL_1627APJL_1626APJL_1630APJL_1631APJL_1629APJL_1629
APLE416269 APL_1596APL_1595APL_1594APL_1593APL_1597APL_1598APL_1596APL_1596
AMAR234826 AM1091AM941AM820AM590AM005AM1091AM1091
AHYD196024 AHA_3259AHA_3260AHA_3261AHA_3263AHA_3258AHA_3255AHA_3259AHA_3259
AFER243159 AFE_0535AFE_0533AFE_0532AFE_0189AFE_0536AFE_0535AFE_0535
AEHR187272 MLG_0176MLG_0179MLG_1586MLG_0175MLG_0173MLG_0176MLG_0176
ACRY349163 ACRY_0248ACRY_2290ACRY_2824ACRY_0969ACRY_0659ACRY_0248ACRY_0248
ABOR393595 ABO_1959ABO_1963ABO_1964ABO_1958ABO_1956ABO_1959ABO_1959
ABAU360910 BAV0135BAV0137BAV0138BAV0139BAV3159BAV3172BAV0135BAV0135
AAVE397945 AAVE_0332AAVE_0364AAVE_0363AAVE_0362AAVE_4056AAVE_0846AAVE_0332AAVE_0332


Organism features enriched in list (features available for 176 out of the 187 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00002211292
Arrangment:Pairs 0.003718345112
Disease:Bubonic_plague 0.000712666
Disease:Dysentery 0.000712666
Disease:Gastroenteritis 0.00053561013
Disease:Legionnaire's_disease 0.008108744
Disease:Meningitis_and_septicemia 0.008108744
Endospores:No 1.756e-933211
GC_Content_Range4:0-40 2.147e-2711213
GC_Content_Range4:40-60 1.096e-12106224
GC_Content_Range4:60-100 0.000613159145
GC_Content_Range7:30-40 1.613e-1711166
GC_Content_Range7:40-50 0.005282546117
GC_Content_Range7:50-60 3.582e-1060107
GC_Content_Range7:60-70 0.000042959134
Genome_Size_Range5:0-2 1.246e-206155
Genome_Size_Range5:2-4 0.000908144197
Genome_Size_Range5:4-6 1.357e-19103184
Genome_Size_Range5:6-10 0.00235822347
Genome_Size_Range9:1-2 1.922e-156128
Genome_Size_Range9:4-5 4.503e-85296
Genome_Size_Range9:5-6 2.570e-95188
Genome_Size_Range9:6-8 0.00016492238
Gram_Stain:Gram_Neg 2.931e-34163333
Habitat:Multiple 0.007017365178
Habitat:Specialized 0.0016816753
Motility:No 6.698e-1116151
Motility:Yes 2.555e-10115267
Optimal_temp.:25-30 0.00738411119
Optimal_temp.:35-37 4.055e-61213
Oxygen_Req:Anaerobic 4.408e-107102
Oxygen_Req:Facultative 5.764e-889201
Pathogenic_in:No 0.000057648226
Pathogenic_in:Plant 0.00052851115
Shape:Coccobacillus 0.0035969811
Shape:Coccus 8.174e-6982
Shape:Rod 6.877e-14144347
Shape:Sphere 0.0081727119
Shape:Spiral 0.0069004434
Temp._range:Mesophilic 0.0007151156473
Temp._range:Psychrophilic 0.000392489
Temp._range:Thermophilic 0.0000358135



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 200
Effective number of orgs (counting one per cluster within 468 clusters): 149

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I1
TWHI218496 ncbi Tropheryma whipplei TW08/271
TWHI203267 ncbi Tropheryma whipplei Twist1
TVOL273116 ncbi Thermoplasma volcanium GSS10
TSP28240 Thermotoga sp.0
TPET390874 ncbi Thermotoga petrophila RKU-10
TPEN368408 ncbi Thermofilum pendens Hrk 50
TMAR243274 ncbi Thermotoga maritima MSB80
TLET416591 ncbi Thermotoga lettingae TMO1
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
STOK273063 ncbi Sulfolobus tokodaii 70
STHE322159 ncbi Streptococcus thermophilus LMD-90
STHE299768 ncbi Streptococcus thermophilus CNRZ10660
STHE264199 ncbi Streptococcus thermophilus LMG 183110
SSUI391296 ncbi Streptococcus suis 98HAH330
SSUI391295 ncbi Streptococcus suis 05ZYH330
SSOL273057 ncbi Sulfolobus solfataricus P20
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153051
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370552 ncbi Streptococcus pyogenes MGAS102700
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103940
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SPNE488221 ncbi Streptococcus pneumoniae 705850
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-60
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-140
SPNE171101 ncbi Streptococcus pneumoniae R60
SPNE170187 ncbi Streptococcus pneumoniae G540
SPNE1313 Streptococcus pneumoniae0
SMUT210007 ncbi Streptococcus mutans UA1590
SMAR399550 ncbi Staphylothermus marinus F10
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14351
SGOR29390 Streptococcus gordonii Challis0
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23381
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122281
SEPI176279 ncbi Staphylococcus epidermidis RP62A1
SCO ncbi Streptomyces coelicolor A3(2)0
SAVE227882 ncbi Streptomyces avermitilis MA-46801
SAUR93062 ncbi Staphylococcus aureus aureus COL1
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83251
SAUR426430 ncbi Staphylococcus aureus aureus Newman1
SAUR418127 ncbi Staphylococcus aureus aureus Mu31
SAUR367830 Staphylococcus aureus aureus USA3001
SAUR359787 ncbi Staphylococcus aureus aureus JH11
SAUR359786 ncbi Staphylococcus aureus aureus JH91
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4761
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2521
SAUR273036 ncbi Staphylococcus aureus RF1221
SAUR196620 ncbi Staphylococcus aureus aureus MW21
SAUR158879 ncbi Staphylococcus aureus aureus N3151
SAUR158878 ncbi Staphylococcus aureus aureus Mu501
SAGA211110 ncbi Streptococcus agalactiae NEM3160
SAGA208435 ncbi Streptococcus agalactiae 2603V/R0
SAGA205921 ncbi Streptococcus agalactiae A9090
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RSP101510 ncbi Rhodococcus jostii RHA11
RCAS383372 ncbi Roseiflexus castenholzii DSM 139411
RALB246199 Ruminococcus albus 80
PTOR263820 ncbi Picrophilus torridus DSM 97901
PSP117 Pirellula sp.1
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257450
PMOB403833 ncbi Petrotoga mobilis SJ950
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PHOR70601 ncbi Pyrococcus horikoshii OT30
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135141
PAER178306 ncbi Pyrobaculum aerophilum IM21
PABY272844 ncbi Pyrococcus abyssi GE50
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
NFAR247156 ncbi Nocardia farcinica IFM 101521
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-11
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra1
MTUB336982 ncbi Mycobacterium tuberculosis F111
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MTBRV ncbi Mycobacterium tuberculosis H37Rv1
MTBCDC ncbi Mycobacterium tuberculosis CDC15511
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSP189918 ncbi Mycobacterium sp. KMS1
MSP164757 ncbi Mycobacterium sp. JLS1
MSP164756 ncbi Mycobacterium sp. MCS1
MSME246196 ncbi Mycobacterium smegmatis MC2 1551
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MLEP272631 ncbi Mycobacterium leprae TN1
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK1
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P21
MBOV233413 ncbi Mycobacterium bovis AF2122/971
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
MABS561007 ncbi Mycobacterium abscessus ATCC 199771
LXYL281090 ncbi Leifsonia xyli xyli CTCB071
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53340
LSPH444177 ncbi Lysinibacillus sphaericus C3-411
LSAK314315 ncbi Lactobacillus sakei sakei 23K0
LREU557436 ncbi Lactobacillus reuteri DSM 200160
LPLA220668 ncbi Lactobacillus plantarum WCFS10
LMON265669 ncbi Listeria monocytogenes 4b F23650
LMON169963 ncbi Listeria monocytogenes EGD-e0
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82930
LLAC272623 ncbi Lactococcus lactis lactis Il14030
LLAC272622 ncbi Lactococcus lactis cremoris SK110
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-001
LINN272626 ncbi Listeria innocua Clip112620
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LCAS321967 ncbi Lactobacillus casei ATCC 3340
LBRE387344 ncbi Lactobacillus brevis ATCC 3670
LACI272621 ncbi Lactobacillus acidophilus NCFM0
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSAL478009 ncbi Halobacterium salinarum R10
HMUK485914 ncbi Halomicrobium mukohataei DSM 122861
HMAR272569 ncbi Haloarcula marismortui ATCC 430490
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255861
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B11
FMAG334413 ncbi Finegoldia magna ATCC 293281
EFAE226185 ncbi Enterococcus faecalis V5830
DSP255470 ncbi Dehalococcoides sp. CBDB10
DSP216389 ncbi Dehalococcoides sp. BAV10
DETH243164 ncbi Dehalococcoides ethenogenes 1950
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS1
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE250
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPHY357809 ncbi Clostridium phytofermentans ISDg0
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3821
CMIC31964 ncbi Clavibacter michiganensis sepedonicus1
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CJEI306537 ncbi Corynebacterium jeikeium K4111
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130321
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CEFF196164 ncbi Corynebacterium efficiens YS-3141
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131291
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN1
CBLO203907 ncbi Candidatus Blochmannia floridanus1
CABO218497 ncbi Chlamydophila abortus S26/30
BXEN266265 ncbi Burkholderia xenovorans LB4001
BTUR314724 ncbi Borrelia turicatae 91E1351
BLON206672 ncbi Bifidobacterium longum NCC27050
BHER314723 ncbi Borrelia hermsii DAH1
BGAR290434 ncbi Borrelia garinii PBi1
BBUR224326 ncbi Borrelia burgdorferi B311
BAFZ390236 ncbi Borrelia afzelii PKo1
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
APER272557 ncbi Aeropyrum pernix K10
ANAE240017 Actinomyces oris MG11
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
ABUT367737 ncbi Arcobacter butzleri RM40181
AAUR290340 ncbi Arthrobacter aurescens TC11


Names of the homologs of the genes in the group in each of these orgs
  EG11893   EG11592   EG11591   EG11306   EG10854   EG10607   EG10203   EG10201   
UURE95667
UURE95664
UPAR505682
UMET351160 RRC130
TWHI218496 TW0283
TWHI203267 TW463
TVOL273116
TSP28240
TPET390874
TPEN368408
TMAR243274
TLET416591 TLET_0418
TKOD69014
TACI273075
STOK273063
STHE322159
STHE299768
STHE264199
SSUI391296
SSUI391295
SSOL273057
SSAP342451 SSP1850
SPYO370554
SPYO370553
SPYO370552
SPYO370551
SPYO319701
SPYO293653
SPYO286636
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SPNE488221
SPNE487214
SPNE487213
SPNE171101
SPNE170187
SPNE1313
SMUT210007
SMAR399550
SHAE279808 SH2028
SGOR29390
SERY405948 SACE_1636
SEPI176280 SE_0617
SEPI176279 SERP0511
SCO
SAVE227882 SAV6010
SAUR93062 SACOL0927
SAUR93061 SAOUHSC_00861
SAUR426430 NWMN_0796
SAUR418127 SAHV_0919
SAUR367830 SAUSA300_0829
SAUR359787 SAURJH1_0942
SAUR359786 SAURJH9_0923
SAUR282459 SAS0795
SAUR282458 SAR0887
SAUR273036 SAB0791
SAUR196620 MW0807
SAUR158879 SA0785
SAUR158878 SAV0924
SAGA211110
SAGA208435
SAGA205921
SACI330779
RSP101510 RHA1_RO01153
RCAS383372 RCAS_3131
RALB246199
PTOR263820 PTO1260
PSP117 RB4868
PPEN278197
PMOB403833
PISL384616
PHOR70601
PFUR186497
PAST100379
PARS340102 PARS_1183
PAER178306 PAE2651
PABY272844
NPHA348780
NFAR247156 NFA16870
MVAN350058 MVAN_3581
MTUB419947 MRA_2233
MTUB336982 TBFG_12245
MTHE349307
MTHE187420
MTBRV RV2217
MTBCDC MT2274
MSYN262723
MSTA339860
MSP189918 MKMS_3377
MSP164757 MJLS_3326
MSP164756 MMCS_3315
MSME246196 MSMEG_4285
MSED399549
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR368407
MMAR267377
MLEP272631 ML0859
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGIL350054 MFLV_2933
MGEN243273
MFLO265311
MCAP340047
MBUR259564
MBOV410289 BCG_2233
MBOV233413 MB2240
MBAR269797
MART243272
MAEO419665
MACE188937
MABS561007 MAB_1943C
LXYL281090 LXX10110
LWEL386043
LSPH444177 BSPH_0562
LSAK314315
LREU557436
LPLA220668
LMON265669
LMON169963
LMES203120
LLAC272623
LLAC272622
LJOH257314
LINT363253 LI0396
LINN272626
LHEL405566
LGAS324831
LDEL390333
LDEL321956
LCAS321967
LBRE387344
LACI272621
IHOS453591
HWAL362976
HSP64091
HSAL478009
HMUK485914 HMUK_0672
HMAR272569
HBUT415426
FNUC190304 FN1027
FNOD381764 FNOD_1005
FMAG334413 FMG_0717
EFAE226185
DSP255470
DSP216389
DETH243164
CTRA471473
CTRA471472
CSUL444179 SMGWSS_001
CPRO264201
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPHY357809
CMUR243161
CMIC443906 CMM_1209
CMIC31964 CMS1882
CMET456442
CMAQ397948
CKOR374847
CJEI306537 JK0706
CGLU196627 CG2422
CFEL264202
CEFF196164 CE2099
CDIP257309 DIP1640
CCAV227941
CBLO291272 BPEN_316
CBLO203907 BFL308
CABO218497
BXEN266265 BXE_B0316
BTUR314724 BT0735
BLON206672
BHER314723 BH0735
BGAR290434 BG0757
BBUR224326 BB_0735
BAFZ390236 BAPKO_0779
AYEL322098
AURANTIMONAS
APER272557
ANAE240017 ANA_0901
ALAI441768
AFUL224325
ABUT367737 ABU_0976
AAUR290340 AAUR_1748


Organism features enriched in list (features available for 189 out of the 200 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00141904292
Arrangment:Clusters 2.035e-61517
Disease:Pharyngitis 0.000110288
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 3.397e-61111
Disease:Wide_range_of_infections 3.397e-61111
Disease:bronchitis_and_pneumonitis 0.000110288
Endospores:No 1.866e-32133211
Endospores:Yes 0.0001622653
GC_Content_Range4:0-40 1.179e-10104213
GC_Content_Range4:40-60 0.000027251224
GC_Content_Range4:60-100 0.002201734145
GC_Content_Range7:0-30 0.00271342447
GC_Content_Range7:30-40 2.245e-780166
GC_Content_Range7:50-60 9.439e-813107
GC_Content_Range7:60-70 0.000353828134
Genome_Size_Range5:0-2 2.364e-1692155
Genome_Size_Range5:4-6 2.979e-1718184
Genome_Size_Range9:0-1 9.907e-82227
Genome_Size_Range9:1-2 1.840e-970128
Genome_Size_Range9:2-3 0.000019958120
Genome_Size_Range9:3-4 0.00021451277
Genome_Size_Range9:4-5 2.084e-71196
Genome_Size_Range9:5-6 5.111e-9788
Genome_Size_Range9:6-8 0.0010237438
Gram_Stain:Gram_Neg 6.684e-3540333
Gram_Stain:Gram_Pos 2.632e-1994150
Habitat:Host-associated 0.003800180206
Habitat:Multiple 0.006012146178
Habitat:Specialized 0.00158742753
Motility:No 5.442e-1994151
Motility:Yes 9.239e-1151267
Optimal_temp.:- 9.612e-1148257
Optimal_temp.:30-35 0.005255167
Optimal_temp.:30-37 3.645e-81718
Optimal_temp.:37 0.002833146106
Oxygen_Req:Aerobic 8.918e-638185
Oxygen_Req:Anaerobic 0.002172045102
Oxygen_Req:Facultative 0.000583782201
Pathogenic_in:Swine 0.003453655
Salinity:Non-halophilic 0.008259844106
Shape:Coccus 1.755e-155982
Shape:Irregular_coccus 2.909e-91717
Shape:Rod 2.350e-1372347
Shape:Sphere 3.093e-61619
Temp._range:Hyperthermophilic 4.884e-82023



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ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 6
Effective number of orgs (counting one per cluster within 468 clusters): 4

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
WPIP80849 Wolbachia endosymbiont of Brugia malayi 0.00002753337
AMAR234826 ncbi Anaplasma marginale St. Maries 0.00003523457
WPIP955 Wolbachia pipientis 0.00007313837
CBUR360115 ncbi Coxiella burnetii RSA 331 0.00180439978
CBUR227377 ncbi Coxiella burnetii RSA 493 0.002018010118
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-111 0.002797810538


Names of the homologs of the genes in the group in each of these orgs
  EG11893   EG11592   EG11591   EG11306   EG10854   EG10607   EG10203   EG10201   
WPIP80849 WB_0447WB_0369WB_0469WB_0192WB_0023WB_0447WB_0447
AMAR234826 AM1091AM941AM820AM590AM005AM1091AM1091
WPIP955 WD_0098WD_1014WD_0392WD_0496WD_1108WD_0098WD_0098
CBUR360115 COXBURSA331_A1408COXBURSA331_A1409COXBURSA331_A1413COXBURSA331_A1414COXBURSA331_A0952COXBURSA331_A0663COXBURSA331_A1408COXBURSA331_A1408
CBUR227377 CBU_1261CBU_1262CBU_1265CBU_1266CBU_0987CBU_0549CBU_1261CBU_1261
CBUR434922 COXBU7E912_1345COXBU7E912_1346COXBU7E912_1350COXBU7E912_1351COXBU7E912_1060COXBU7E912_1514COXBU7E912_1345COXBU7E912_1345


Organism features enriched in list (features available for 4 out of the 6 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Disease:Bovine_anaplasmosis 0.006861111
Disease:Q-fever 0.006861111
Disease:Q_fever 0.000035422
GC_Content_Range7:40-50 0.00155614117
Pathogenic_in:Animal 0.0049658366
Shape:Coccobacillus 0.0000198311



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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181590.6870
GLYCOCAT-PWY (glycogen degradation I)2461660.6603
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3001800.6305
AST-PWY (arginine degradation II (AST pathway))1201070.6304
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2911720.5942
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2961730.5902
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2901710.5894
PWY-5918 (heme biosynthesis I)2721650.5886
PWY-1269 (CMP-KDO biosynthesis I)3251810.5850
PWY-4041 (γ-glutamyl cycle)2791650.5723
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2861670.5703
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951340.5700
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)1761240.5536
PWY-5913 (TCA cycle variation IV)3011690.5512
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251430.5502
GLUTATHIONESYN-PWY (glutathione biosynthesis)3391800.5502
ECASYN-PWY (enterobacterial common antigen biosynthesis)1911290.5444
PWY-5857 (ubiquinone-10 biosynthesis (prokaryotic))1831250.5388
PWY-5386 (methylglyoxal degradation I)3051670.5286
NAGLIPASYN-PWY (lipid IVA biosynthesis)3481790.5258
GLUCONSUPER-PWY (D-gluconate degradation)2291410.5249
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491470.5166
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491470.5166
PWY-5855 (ubiquinone-7 biosynthesis (prokaryotic))1911250.5140
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)1491070.5113
PWY-5755 (4-hydroxybenzoate biosynthesis II (bacteria and fungi))81720.4966
PWY0-845 (superpathway of pyridoxal 5'-phosphate biosynthesis and salvage)3291690.4928
TYRFUMCAT-PWY (tyrosine degradation I)1841180.4819
LIPASYN-PWY (phospholipases)2121280.4758
PWY-5148 (acyl-CoA hydrolysis)2271330.4720
DAPLYSINESYN-PWY (lysine biosynthesis I)3421690.4669
PWY-5856 (ubiquinone-9 biosynthesis (prokaryotic))2551420.4662
UBISYN-PWY (ubiquinol-8 biosynthesis (prokaryotic))3981820.4560
REDCITCYC (TCA cycle variation II)1741090.4432
PWY0-981 (taurine degradation IV)106790.4398
GALACTITOLCAT-PWY (galactitol degradation)73620.4365
POLYISOPRENSYN-PWY (polyisoprenoid biosynthesis (E. coli))116830.4335
PYRIDOXSYN-PWY (pyridoxal 5'-phosphate biosynthesis I)4221840.4295
PWY-5084 (2-ketoglutarate dehydrogenase complex)3261590.4288
PWY-3162 (tryptophan degradation V (side chain pathway))94720.4284
P184-PWY (protocatechuate degradation I (meta-cleavage pathway))94720.4284
PWY-5669 (phosphatidylethanolamine biosynthesis I)4161820.4248
KDOSYN-PWY (KDO transfer to lipid IVA I)1801090.4247
P601-PWY (D-camphor degradation)95720.4236
PWY0-541 (cyclopropane fatty acid (CFA) biosynthesis)3001500.4202
KDO-NAGLIPASYN-PWY (superpathway of KDO2-lipid A biosynthesis)1791080.4200
GLUCARDEG-PWY (D-glucarate degradation I)152970.4189
PLPSAL-PWY (pyridoxal 5'-phosphate salvage pathway)3741700.4128
PWY0-1182 (trehalose degradation II (trehalase))70580.4102
PWY-6134 (tyrosine biosynthesis IV)89670.4032
PWY-6087 (4-chlorocatechol degradation)2231220.4023
PWY-46 (putrescine biosynthesis III)138890.4013



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG11592   EG11591   EG11306   EG10854   EG10607   EG10203   EG10201   
EG118930.9996750.9996780.9996340.9997640.9994550.9999790.999979
EG115920.9997860.9997030.9994580.9994460.9996620.999733
EG115910.9998740.9994340.9993970.9996690.999725
EG113060.9994780.9993420.9996220.999677
EG108540.9996710.9997540.999794
EG106070.9994250.999549
EG102030.999981
EG10201



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PAIRWISE BLAST SCORES:

  EG11893   EG11592   EG11591   EG11306   EG10854   EG10607   EG10203   EG10201   
EG118930.0f0-----1.7e-943.1e-95
EG11592-0.0f0------
EG11591--0.0f0-----
EG11306---0.0f0----
EG10854----0.0f0---
EG10607-----0.0f0--
EG102035.7e-87-----0.0f01.1e-120
EG102013.1e-95-----1.5e-1270.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- PWY0-501 (lipoate biosynthesis and incorporation I) (degree of match pw to cand: 0.667, degree of match cand to pw: 0.250, average score: 0.859)
  Genes in pathway or complex:
   *in cand* 0.9997 0.9993 EG11306 (lipA) EG11306-MONOMER (lipoate synthase monomer)
   *in cand* 0.9997 0.9994 EG11591 (lipB) EG11591-MONOMER (lipoyl-protein ligase)
             0.7269 0.2031 EG50003 (acpP) TRANS-DELTA3-CIS-DELTA5-DODECENOYL-ACP (trans-Δ3-cis-Δ5-dodecenoyl-ACP)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9998 0.9995 EG10201 (dacA) EG10201-MONOMER (D-alanyl-D-alanine carboxypeptidase, fraction A; penicillin-binding protein 5)
   *in cand* 0.9998 0.9994 EG10203 (dacC) EG10203-MONOMER (penicillin-binding protein 6)
   *in cand* 0.9995 0.9993 EG10607 (mrdB) EG10607-MONOMER (rod shape-determining membrane protein; sensitivity to radiation and drugs)
   *in cand* 0.9997 0.9994 EG10854 (rlpA) EG10854-MONOMER (rare lipoprotein RlpA)
   *in cand* 0.9997 0.9994 EG11592 (ybeD) EG11592-MONOMER (conserved protein)
   *in cand* 0.9998 0.9995 EG11893 (dacD) RPOA-MONOMER (DD-carboxypeptidase, penicillin-binding protein 6b)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10201 EG10607 EG10854 EG11306 EG11591 EG11592 (centered at EG10201)
EG10203 (centered at EG10203)
EG11893 (centered at EG11893)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  EG11893   EG11592   EG11591   EG11306   EG10854   EG10607   EG10203   EG10201   
293/623148/623382/623390/623310/623351/623299/623298/623
AAEO224324:0:Tyes---9479630--
AAUR290340:2:Tyes--0-----
AAVE397945:0:Tyes0323130365850500
ABAC204669:0:Tyes--2865305111360--
ABAU360910:0:Tyes02343032304500
ABOR393595:0:Tyes3-782033
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SBAL399599:3:Tyes34562033
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