CANDIDATE ID: 88

CANDIDATE ID: 88

NUMBER OF GENES: 8
AVERAGE SCORE:    9.9968764e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7321 (yfgM) (b2513)
   Products of gene:
     - G7321-MONOMER (conserved protein)

- G7320 (bamB) (bamB)
   Products of gene:
     - G7320-MONOMER (BamB)
     - CPLX0-3933 (Outer Membrane Protein Assembly Complex)

- G7319 (der) (b2511)
   Products of gene:
     - G7319-MONOMER (50S ribosomal subunit stability factor)
       Reactions:
        GTP + H2O  ->  GDP + phosphate + H+

- EG12401 (rlmN) (b2517)
   Products of gene:
     - EG12401-MONOMER (23S rRNA m2A2503 methyltransferase)
       Reactions:
        S-adenosyl-L-methionine + adenine2503 in 23S rRNA  ->  S-adenosyl-L-homocysteine + 2-methyladenine2503 in 23S rRNA

- EG10650 (ndk) (b2518)
   Products of gene:
     - NUCLEOSIDE-DIP-KIN-MONOMER (Ndk)
     - NUCLEOSIDE-DIP-KIN-CPLX (nucleoside diphosphate kinase)
       Reactions:
        a ribonucleoside diphosphate + ATP  ->  a ribonucleoside triphosphate + ADP
        UDP + ATP  ->  UTP + ADP + H+
         In pathways
         PRPP-PWY (superpathway of histidine, purine, and pyrimidine biosynthesis)
         PWY0-162 (pyrimidine ribonucleotides de novo biosynthesis)
         PWY-5687 (pyrimidine ribonucleotides interconversion)
        CDP + ATP  ->  CTP + ADP + H+
         In pathways
         PRPP-PWY (superpathway of histidine, purine, and pyrimidine biosynthesis)
         PWY0-162 (pyrimidine ribonucleotides de novo biosynthesis)
         PWY0-163 (salvage pathways of pyrimidine ribonucleotides)
         PWY-5687 (pyrimidine ribonucleotides interconversion)
        dUDP + ATP  ->  dUTP + ADP + H+
         In pathways
         PWY0-166 (pyrimidine deoxyribonucleotides de novo biosynthesis I)
         PWY-6545 (PWY-6545)
        dCDP + ATP  ->  dCTP + ADP + H+
         In pathways
         PWY0-166 (pyrimidine deoxyribonucleotides de novo biosynthesis I)
         PWY-6545 (PWY-6545)
        dTDP + ATP  ->  dTTP + ADP + H+
         In pathways
         PWY0-166 (pyrimidine deoxyribonucleotides de novo biosynthesis I)
         PWY-6545 (PWY-6545)
        2'-deoxyadenosine-5'-diphosphate + ATP  ->  dATP + ADP + H+
         In pathways
         PRPP-PWY (superpathway of histidine, purine, and pyrimidine biosynthesis)
         DENOVOPURINE2-PWY (purine nucleotides de novo biosynthesis I)
         PWY-6126 (adenosine nucleotides de novo biosynthesis)
        2'-deoxyguanosine-5'-diphosphate + ATP  ->  dGTP + ADP + H+
         In pathways
         PRPP-PWY (superpathway of histidine, purine, and pyrimidine biosynthesis)
         DENOVOPURINE2-PWY (purine nucleotides de novo biosynthesis I)
         PWY-6125 (guanosine nucleotides de novo biosynthesis)
        GDP + ATP  ->  GTP + ADP + H+
         In pathways
         PRPP-PWY (superpathway of histidine, purine, and pyrimidine biosynthesis)
         DENOVOPURINE2-PWY (purine nucleotides de novo biosynthesis I)
         PWY-6125 (guanosine nucleotides de novo biosynthesis)
         PPGPPMET-PWY (ppGpp biosynthesis)

- EG10453 (hisS) (b2514)
   Products of gene:
     - HISS-MONOMER (histidyl-tRNA synthetase)
     - HISS-CPLX (histidyl-tRNA synthetase)
       Reactions:
        tRNAhis + L-histidine + ATP  ->  L-histidyl-tRNAhis + diphosphate + AMP
         In pathways
         TRNA-CHARGING-PWY (tRNA charging pathway)

- EG10370 (ispG) (b2515)
   Products of gene:
     - EG10370-MONOMER (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase)
       Reactions:
        2-C-methyl-D-erythritol-2,4-cyclodiphosphate + 2 a reduced ferredoxin  ->  1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate + 2 an oxidized ferredoxin + H2O
         In pathways
         PWY-5121 (PWY-5121)
         PWY-6270 (PWY-6270)
         NONMEVIPP-PWY (methylerythritol phosphate pathway)

- EG10015 (rodZ) (b2516)
   Products of gene:
     - EG10015-MONOMER (rod shape-determining membrane protein)



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ORGANISMS CONTAINING AT LEAST 7 GENES FROM THE GROUP:

Total number of orgs: 144
Effective number of orgs (counting one per cluster within 468 clusters): 95

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317588
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329538
YPES386656 ncbi Yersinia pestis Pestoides F8
YPES377628 ncbi Yersinia pestis Nepal5168
YPES360102 ncbi Yersinia pestis Antiqua8
YPES349746 ncbi Yersinia pestis Angola8
YPES214092 ncbi Yersinia pestis CO928
YPES187410 ncbi Yersinia pestis KIM 108
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80818
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A7
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110187
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103317
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3067
VVUL216895 ncbi Vibrio vulnificus CMCP68
VVUL196600 ncbi Vibrio vulnificus YJ0168
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106338
VFIS312309 ncbi Vibrio fischeri ES1148
VCHO345073 ncbi Vibrio cholerae O3958
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169618
TTUR377629 ncbi Teredinibacter turnerae T79017
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252598
TCRU317025 ncbi Thiomicrospira crunogena XCL-27
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT28
SSP94122 ncbi Shewanella sp. ANA-38
SSON300269 ncbi Shigella sonnei Ss0468
SSED425104 ncbi Shewanella sediminis HAW-EB38
SPRO399741 ncbi Serratia proteamaculans 5688
SPEA398579 ncbi Shewanella pealeana ATCC 7003458
SONE211586 ncbi Shewanella oneidensis MR-18
SLOI323850 ncbi Shewanella loihica PV-48
SHIGELLA ncbi Shigella flexneri 2a str. 2457T8
SHAL458817 ncbi Shewanella halifaxensis HAW-EB48
SGLO343509 ncbi Sodalis glossinidius morsitans8
SFLE373384 ncbi Shigella flexneri 5 str. 84018
SFLE198214 ncbi Shigella flexneri 2a str. 3018
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4768
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B678
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91508
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT188
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty28
SDYS300267 ncbi Shigella dysenteriae Sd1978
SDEN318161 ncbi Shewanella denitrificans OS2178
SDEG203122 ncbi Saccharophagus degradans 2-408
SBOY300268 ncbi Shigella boydii Sb2278
SBAL402882 ncbi Shewanella baltica OS1858
SBAL399599 ncbi Shewanella baltica OS1958
RSOL267608 ncbi Ralstonia solanacearum GMI10007
RMET266264 ncbi Ralstonia metallidurans CH348
RFER338969 ncbi Rhodoferax ferrireducens T1187
REUT381666 ncbi Ralstonia eutropha H168
REUT264198 ncbi Ralstonia eutropha JMP1348
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30008
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a8
PSTU379731 ncbi Pseudomonas stutzeri A15018
PSP56811 Psychrobacter sp.7
PSP296591 ncbi Polaromonas sp. JS6667
PPUT76869 ncbi Pseudomonas putida GB-18
PPUT351746 ncbi Pseudomonas putida F18
PPUT160488 ncbi Pseudomonas putida KT24408
PPRO298386 ncbi Photobacterium profundum SS98
PMUL272843 ncbi Pasteurella multocida multocida Pm707
PMEN399739 ncbi Pseudomonas mendocina ymp8
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO18
PING357804 ncbi Psychromonas ingrahamii 378
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1258
PFLU220664 ncbi Pseudomonas fluorescens Pf-58
PFLU216595 ncbi Pseudomonas fluorescens SBW258
PFLU205922 ncbi Pseudomonas fluorescens Pf0-18
PENT384676 ncbi Pseudomonas entomophila L488
PATL342610 ncbi Pseudoalteromonas atlantica T6c8
PAER208964 ncbi Pseudomonas aeruginosa PAO18
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA148
NOCE323261 ncbi Nitrosococcus oceani ATCC 197077
NMUL323848 ncbi Nitrosospira multiformis ATCC 251967
NEUT335283 ncbi Nitrosomonas eutropha C918
NEUR228410 ncbi Nitrosomonas europaea ATCC 197188
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E7
MSP400668 ncbi Marinomonas sp. MWYL18
MPET420662 ncbi Methylibium petroleiphilum PM18
MFLA265072 ncbi Methylobacillus flagellatus KT8
MCAP243233 ncbi Methylococcus capsulatus Bath8
MAQU351348 ncbi Marinobacter aquaeolei VT88
LPNE400673 ncbi Legionella pneumophila Corby7
LPNE297246 ncbi Legionella pneumophila Paris7
LPNE297245 ncbi Legionella pneumophila Lens7
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 17
LCHO395495 ncbi Leptothrix cholodnii SP-67
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785788
JSP375286 ncbi Janthinobacterium sp. Marseille8
ILOI283942 ncbi Idiomarina loihiensis L2TR8
HSOM228400 ncbi Haemophilus somnus 23367
HSOM205914 ncbi Haemophilus somnus 129PT7
HINF71421 ncbi Haemophilus influenzae Rd KW207
HINF374930 ncbi Haemophilus influenzae PittEE7
HINF281310 ncbi Haemophilus influenzae 86-028NP7
HHAL349124 ncbi Halorhodospira halophila SL18
HDUC233412 ncbi Haemophilus ducreyi 35000HP7
HCHE349521 ncbi Hahella chejuensis KCTC 23968
HARS204773 ncbi Herminiimonas arsenicoxydans7
ESP42895 Enterobacter sp.8
EFER585054 ncbi Escherichia fergusonii ATCC 354698
ECOO157 ncbi Escherichia coli O157:H7 EDL9338
ECOL83334 Escherichia coli O157:H78
ECOL585397 ncbi Escherichia coli ED1a8
ECOL585057 ncbi Escherichia coli IAI398
ECOL585056 ncbi Escherichia coli UMN0268
ECOL585055 ncbi Escherichia coli 559898
ECOL585035 ncbi Escherichia coli S888
ECOL585034 ncbi Escherichia coli IAI18
ECOL481805 ncbi Escherichia coli ATCC 87398
ECOL469008 ncbi Escherichia coli BL21(DE3)8
ECOL439855 ncbi Escherichia coli SMS-3-58
ECOL413997 ncbi Escherichia coli B str. REL6068
ECOL409438 ncbi Escherichia coli SE118
ECOL405955 ncbi Escherichia coli APEC O18
ECOL364106 ncbi Escherichia coli UTI898
ECOL362663 ncbi Escherichia coli 5368
ECOL331111 ncbi Escherichia coli E24377A8
ECOL316407 ncbi Escherichia coli K-12 substr. W31108
ECOL199310 ncbi Escherichia coli CFT0738
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10438
DARO159087 ncbi Dechloromonas aromatica RCB8
CVIO243365 ncbi Chromobacterium violaceum ATCC 124727
CSAL290398 ncbi Chromohalobacter salexigens DSM 30438
CPSY167879 ncbi Colwellia psychrerythraea 34H8
CJAP155077 Cellvibrio japonicus8
BVIE269482 ncbi Burkholderia vietnamiensis G47
BSP36773 Burkholderia sp.7
BCEN331272 ncbi Burkholderia cenocepacia HI24247
BCEN331271 ncbi Burkholderia cenocepacia AU 10547
BAMB398577 ncbi Burkholderia ambifaria MC40-67
BAMB339670 ncbi Burkholderia ambifaria AMMD7
ASP76114 ncbi Aromatoleum aromaticum EbN18
ASP62977 ncbi Acinetobacter sp. ADP18
ASP62928 ncbi Azoarcus sp. BH728
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4498
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL037
APLE416269 ncbi Actinobacillus pleuropneumoniae L207
AHYD196024 Aeromonas hydrophila dhakensis8
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232708
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-17
ACRY349163 ncbi Acidiphilium cryptum JF-57
ABOR393595 ncbi Alcanivorax borkumensis SK28
AAVE397945 ncbi Acidovorax citrulli AAC00-17


Names of the homologs of the genes in the group in each of these orgs
  G7321   G7320   G7319   EG12401   EG10650   EG10453   EG10370   EG10015   
YPSE349747 YPSIP31758_1188YPSIP31758_1189YPSIP31758_1190YPSIP31758_1183YPSIP31758_1182YPSIP31758_1187YPSIP31758_1186YPSIP31758_1185
YPSE273123 YPTB2839YPTB2838YPTB2837YPTB2844YPTB2845YPTB2840YPTB2841YPTB2842
YPES386656 YPDSF_2222YPDSF_2221YPDSF_2220YPDSF_2227YPDSF_2228YPDSF_2223YPDSF_2224YPDSF_2225
YPES377628 YPN_1261YPN_1262YPN_1263YPN_1256YPN_1255YPN_1260YPN_1259YPN_1258
YPES360102 YPA_2317YPA_2316YPA_2315YPA_2322YPA_2323YPA_2318YPA_2319YPA_2320
YPES349746 YPANGOLA_A0416YPANGOLA_A0415YPANGOLA_A0414YPANGOLA_A0421YPANGOLA_A0422YPANGOLA_A0417YPANGOLA_A0418YPANGOLA_A0419
YPES214092 YPO2877YPO2876YPO2875YPO2882YPO2883YPO2878YPO2879YPO2880
YPES187410 Y1355Y1356Y1357Y1350Y1349Y1354Y1353Y1352
YENT393305 YE1075YE1076YE1077YE1070YE1069YE1074YE1073YE1072
XORY360094 XOOORF_2760XOOORF_2759XOOORF_2758XOOORF_2763XOOORF_2764XOOORF_2447XOOORF_2761
XORY342109 XOO2389XOO2388XOO2387XOO2392XOO2393XOO2095XOO2390
XORY291331 XOO2531XOO2530XOO2529XOO2534XOO2535XOO2229XOO2532
XAXO190486 XAC2019XAC2020XAC2021XAC2016XAC2015XAC1799XAC2018
VVUL216895 VV1_0425VV1_0424VV1_0423VV1_0429VV1_0430VV1_0426VV1_0427VV1_0428
VVUL196600 VV0768VV0769VV0770VV0764VV0763VV0767VV0766VV0765
VPAR223926 VP0610VP0611VP0612VP0605VP0604VP0609VP0608VP0607
VFIS312309 VF0631VF0632VF0633VF0626VF0625VF0630VF0629VF0628
VCHO345073 VC0395_A0290VC0395_A0291VC0395_A0292VC0395_A0286VC0395_A0285VC0395_A0289VC0395_A0288VC0395_A0287
VCHO VC0761VC0762VC0763VC0757VC0756VC0760VC0759VC0758
TTUR377629 TERTU_2632TERTU_2631TERTU_2630TERTU_2636TERTU_2637TERTU_2633TERTU_2634
TDEN292415 TBD_0596TBD_0597TBD_0598TBD_0591TBD_0590TBD_0595TBD_0594TBD_0593
TCRU317025 TCR_0623TCR_0624TCR_0625TCR_0620TCR_0619TCR_0622TCR_0621
STYP99287 STM2521STM2520STM2519STM2525STM2526STM2522STM2523STM2524
SSP94122 SHEWANA3_1231SHEWANA3_1232SHEWANA3_1233SHEWANA3_1226SHEWANA3_2272SHEWANA3_1230SHEWANA3_1229SHEWANA3_1228
SSON300269 SSO_2595SSO_2594SSO_2593SSO_2599SSO_2600SSO_2596SSO_2597SSO_2598
SSED425104 SSED_1434SSED_1435SSED_1436SSED_1429SSED_2862SSED_1433SSED_1432SSED_1431
SPRO399741 SPRO_3607SPRO_3606SPRO_3605SPRO_3612SPRO_3613SPRO_3608SPRO_3609SPRO_3610
SPEA398579 SPEA_1307SPEA_1308SPEA_1309SPEA_1302SPEA_1498SPEA_1306SPEA_1305SPEA_1304
SONE211586 SO_3310SO_3309SO_3308SO_3315SO_2274SO_3311SO_3312SO_3313
SLOI323850 SHEW_1292SHEW_1293SHEW_1294SHEW_1287SHEW_2310SHEW_1291SHEW_1290SHEW_1289
SHIGELLA S2731S2730S2729YFGBNDKHISSGCPEYFGA
SHAL458817 SHAL_1369SHAL_1370SHAL_1371SHAL_1364SHAL_1580SHAL_1368SHAL_1367SHAL_1366
SGLO343509 SG1758SG1757SG1756SG1763SG1764SG1759SG1760SG1761
SFLE373384 SFV_2560SFV_2559SFV_2558SFV_2564SFV_2565SFV_2561SFV_2562SFV_2563
SFLE198214 AAN44059.1AAN44058.1AAN44057.1AAN44063.1AAN44064.1AAN44060.1AAN44061.1AAN44062.1
SENT454169 SEHA_C2778SEHA_C2777SEHA_C2776SEHA_C2783SEHA_C2784SEHA_C2779SEHA_C2781SEHA_C2782
SENT321314 SCH_2518SCH_2517SCH_2516SCH_2522SCH_2523SCH_2519SCH_2520SCH_2521
SENT295319 SPA0346SPA0347SPA0348SPA0342SPA0341SPA0345SPA0344SPA0343
SENT220341 STY2766STY2765STY2764STY2770STY2771STY2767STY2768STY2769
SENT209261 T0335T0336T0337T0331T0330T0334T0333T0332
SDYS300267 SDY_2709SDY_2708SDY_2707SDY_2713SDY_2714SDY_2710SDY_2711SDY_2712
SDEN318161 SDEN_1258SDEN_1259SDEN_1260SDEN_1253SDEN_2390SDEN_1257SDEN_1256SDEN_1255
SDEG203122 SDE_1436SDE_1437SDE_1438SDE_1431SDE_1430SDE_1435SDE_1434SDE_1433
SBOY300268 SBO_2537SBO_2536SBO_2535SBO_2541SBO_2542SBO_2538SBO_2539SBO_2540
SBAL402882 SHEW185_3003SHEW185_3002SHEW185_3001SHEW185_3008SHEW185_2377SHEW185_3004SHEW185_3005SHEW185_3006
SBAL399599 SBAL195_3146SBAL195_3145SBAL195_3144SBAL195_3151SBAL195_2493SBAL195_3147SBAL195_3148SBAL195_3149
RSOL267608 RSC1217RSC1218RSC1219RSC1212RSC1211RSC1216RSC1214
RMET266264 RMET_2104RMET_2103RMET_2102RMET_2109RMET_2110RMET_2105RMET_2106RMET_2107
RFER338969 RFER_2305RFER_2304RFER_2303RFER_2310RFER_2311RFER_2306RFER_2307
REUT381666 H16_A2362H16_A2361H16_A2360H16_A2367H16_A2368H16_A2363H16_A2364H16_A2365
REUT264198 REUT_A2084REUT_A2083REUT_A2082REUT_A2089REUT_A2090REUT_A2085REUT_A2086REUT_A2087
PSYR223283 PSPTO_1436PSPTO_1437PSPTO_1438PSPTO_1431PSPTO_1430PSPTO_1435PSPTO_1434PSPTO_1433
PSYR205918 PSYR_1250PSYR_1251PSYR_1252PSYR_1245PSYR_1244PSYR_1249PSYR_1248PSYR_1247
PSTU379731 PST_3029PST_3028PST_3027PST_3034PST_3035PST_3030PST_3031PST_3032
PSP56811 PSYCPRWF_1899PSYCPRWF_1759PSYCPRWF_1905PSYCPRWF_1906PSYCPRWF_1901PSYCPRWF_1902PSYCPRWF_1903
PSP296591 BPRO_2606BPRO_2605BPRO_2604BPRO_2611BPRO_2612BPRO_2607BPRO_2609
PPUT76869 PPUTGB1_0898PPUTGB1_0899PPUTGB1_0900PPUTGB1_0893PPUTGB1_0892PPUTGB1_0897PPUTGB1_0896PPUTGB1_0895
PPUT351746 PPUT_0885PPUT_0886PPUT_0887PPUT_0880PPUT_0879PPUT_0884PPUT_0883PPUT_0882
PPUT160488 PP_0855PP_0856PP_0857PP_0850PP_0849PP_0854PP_0853PP_0852
PPRO298386 PBPRA0765PBPRA0766PBPRA0767PBPRA0760PBPRA0759PBPRA0764PBPRA0763PBPRA0762
PMUL272843 PM2012PM0105PM2007PM1028PM2011PM2010PM2009
PMEN399739 PMEN_3498PMEN_3497PMEN_3496PMEN_3503PMEN_3504PMEN_3499PMEN_3500PMEN_3501
PLUM243265 PLU1378PLU1379PLU1380PLU1373PLU1372PLU1377PLU1376PLU1375
PING357804 PING_1170PING_1171PING_1172PING_1165PING_3326PING_1169PING_1168PING_1167
PHAL326442 PSHAB0136PSHAB0135PSHAB0134PSHAB0141PSHAB0142PSHAB0137PSHAB0138PSHAB0139
PFLU220664 PFL_4952PFL_4951PFL_4950PFL_4957PFL_4958PFL_4953PFL_4954PFL_4955
PFLU216595 PFLU5055PFLU5054PFLU5053PFLU5060PFLU5061PFLU5056PFLU5057PFLU5058
PFLU205922 PFL_4599PFL_4598PFL_4597PFL_4604PFL_4605PFL_4600PFL_4601PFL_4602
PENT384676 PSEEN1023PSEEN1024PSEEN1025PSEEN1018PSEEN1017PSEEN1022PSEEN1021PSEEN1020
PATL342610 PATL_3124PATL_3123PATL_3122PATL_3129PATL_3130PATL_3125PATL_3126PATL_3127
PAER208964 PA3801PA3800PA3799PA3806PA3807PA3802PA3803PA3804
PAER208963 PA14_14900PA14_14910PA14_14930PA14_14830PA14_14820PA14_14890PA14_14880PA14_14860
NOCE323261 NOC_0820NOC_0821NOC_0822NOC_0900NOC_0899NOC_0902NOC_1749
NMUL323848 NMUL_A2375NMUL_A2374NMUL_A2373NMUL_A2379NMUL_A2380NMUL_A2376NMUL_A2378
NEUT335283 NEUT_2166NEUT_2165NEUT_2164NEUT_2171NEUT_2172NEUT_2167NEUT_2168NEUT_2169
NEUR228410 NE0151NE0152NE0153NE0145NE0144NE0150NE0148NE0147
MSUC221988 MS1921MS0734MS1916MS0668MS1920MS1919MS1918
MSP400668 MMWYL1_1358MMWYL1_1359MMWYL1_1360MMWYL1_1353MMWYL1_1352MMWYL1_1357MMWYL1_1356MMWYL1_1355
MPET420662 MPE_A1994MPE_A1993MPE_A1992MPE_A1999MPE_A2000MPE_A1995MPE_A1996MPE_A1997
MFLA265072 MFLA_1616MFLA_1615MFLA_1614MFLA_1623MFLA_1624MFLA_1619MFLA_1620MFLA_1621
MCAP243233 MCA_2890MCA_2891MCA_2892MCA_2887MCA_2886MCA_2889MCA_2483MCA_1363
MAQU351348 MAQU_1129MAQU_1130MAQU_1131MAQU_1124MAQU_1123MAQU_1128MAQU_1127MAQU_1126
LPNE400673 LPC_0964LPC_0963LPC_0962LPC_0968LPC_0969LPC_0965LPC_0966
LPNE297246 LPP1500LPP1499LPP1498LPP1504LPP1505LPP1501LPP1502
LPNE297245 LPL1483LPL1484LPL1485LPL1479LPL1478LPL1482LPL1481
LPNE272624 LPG1543LPG1542LPG1541LPG1547LPG1548LPG1544LPG1545
LCHO395495 LCHO_2866LCHO_2865LCHO_2864LCHO_2871LCHO_2872LCHO_2867LCHO_2869
KPNE272620 GKPORF_B2176GKPORF_B2175GKPORF_B2174GKPORF_B2181GKPORF_B2182GKPORF_B2177GKPORF_B2178GKPORF_B2179
JSP375286 MMA_2125MMA_2124MMA_2123MMA_2130MMA_2131MMA_2126MMA_2127MMA_2128
ILOI283942 IL2032IL2031IL2030IL2037IL2038IL2033IL2034IL2035
HSOM228400 HSM_0731HSM_0290HSM_0364HSM_0712HSM_0730HSM_0729HSM_0728
HSOM205914 HS_0406HS_1325HS_1198HS_0387HS_0405HS_0404HS_0403
HINF71421 HI_0370HI_0136HI_0365HI_0876HI_0369HI_0368HI_0367
HINF374930 CGSHIEE_01155CGSHIEE_02605CGSHIEE_01185CGSHIEE_07650CGSHIEE_01160CGSHIEE_01170CGSHIEE_01175
HINF281310 NTHI0490NTHI0222NTHI0485NTHI1039NTHI0489NTHI0488NTHI0487
HHAL349124 HHAL_1787HHAL_1786HHAL_0591HHAL_1791HHAL_1792HHAL_1788HHAL_0132HHAL_1789
HDUC233412 HD_1040HD_1183HD_0319HD_1053HD_1039HD_1037HD_1036
HCHE349521 HCH_04454HCH_04453HCH_04452HCH_04459HCH_04460HCH_04455HCH_04456HCH_04457
HARS204773 HEAR1266HEAR1267HEAR1268HEAR1261HEAR1260HEAR1265HEAR1264
ESP42895 ENT638_3007ENT638_3006ENT638_3005ENT638_3011ENT638_3012ENT638_3008ENT638_3009ENT638_3010
EFER585054 EFER_0659EFER_0660EFER_0661EFER_0655EFER_0654EFER_0658EFER_0657EFER_0656
ECOO157 Z3776Z3775Z3774YFGBNDKHISSGCPEYFGA
ECOL83334 ECS3375ECS3374ECS3373ECS3379ECS3380ECS3376ECS3377ECS3378
ECOL585397 ECED1_2944ECED1_2943ECED1_2942ECED1_2948ECED1_2949ECED1_2945ECED1_2946ECED1_2947
ECOL585057 ECIAI39_2714ECIAI39_2713ECIAI39_2712ECIAI39_2718ECIAI39_2719ECIAI39_2715ECIAI39_2716ECIAI39_2717
ECOL585056 ECUMN_2833ECUMN_2832ECUMN_2831ECUMN_2837ECUMN_2838ECUMN_2834ECUMN_2835ECUMN_2836
ECOL585055 EC55989_2798EC55989_2797EC55989_2796EC55989_2802EC55989_2803EC55989_2799EC55989_2800EC55989_2801
ECOL585035 ECS88_2689ECS88_2688ECS88_2687ECS88_2693ECS88_2694ECS88_2690ECS88_2691ECS88_2692
ECOL585034 ECIAI1_2565ECIAI1_2564ECIAI1_2563ECIAI1_2569ECIAI1_2570ECIAI1_2566ECIAI1_2567ECIAI1_2568
ECOL481805 ECOLC_1164ECOLC_1165ECOLC_1166ECOLC_1160ECOLC_1159ECOLC_1163ECOLC_1162ECOLC_1161
ECOL469008 ECBD_1173ECBD_1174ECBD_1175ECBD_1169ECBD_1168ECBD_1172ECBD_1171ECBD_1170
ECOL439855 ECSMS35_2665ECSMS35_2664ECSMS35_2663ECSMS35_2669ECSMS35_2670ECSMS35_2666ECSMS35_2667ECSMS35_2668
ECOL413997 ECB_02405ECB_02404ECB_02403ECB_02409ECB_02410ECB_02406ECB_02407ECB_02408
ECOL409438 ECSE_2799ECSE_2798ECSE_2797ECSE_2803ECSE_2804ECSE_2800ECSE_2801ECSE_2802
ECOL405955 APECO1_4011APECO1_4012APECO1_4013APECO1_4007APECO1_4006APECO1_4010APECO1_4009APECO1_4008
ECOL364106 UTI89_C2834UTI89_C2833UTI89_C2832UTI89_C2838UTI89_C2840UTI89_C2835UTI89_C2836UTI89_C2837
ECOL362663 ECP_2518ECP_2517ECP_2516ECP_2522ECP_2523ECP_2519ECP_2520ECP_2521
ECOL331111 ECE24377A_2797ECE24377A_2796ECE24377A_2795ECE24377A_2801ECE24377A_2802ECE24377A_2798ECE24377A_2799ECE24377A_2800
ECOL316407 ECK2509:JW2497:B2513ECK2508:JW2496:B2512ECK2507:JW5403:B2511ECK2513:JW2501:B2517ECK2514:JW2502:B2518ECK2510:JW2498:B2514ECK2511:JW2499:B2515ECK2512:JW2500:B2516
ECOL199310 C3035C3034C3033C3039C3041C3036C3037C3038
ECAR218491 ECA3218ECA3217ECA3216ECA3223ECA3224ECA3219ECA3220ECA3221
DARO159087 DARO_2983DARO_2982DARO_2981DARO_2988DARO_2989DARO_2984DARO_2985DARO_2986
CVIO243365 CV_3536CV_3535CV_3534CV_3541CV_3542CV_3537CV_3539
CSAL290398 CSAL_2856CSAL_2857CSAL_2858CSAL_2851CSAL_2850CSAL_2855CSAL_2854CSAL_2853
CPSY167879 CPS_4250CPS_4249CPS_4247CPS_4255CPS_4256CPS_4251CPS_4252CPS_4253
CJAP155077 CJA_1483CJA_1484CJA_1485CJA_1478CJA_1477CJA_1482CJA_1481CJA_1480
BVIE269482 BCEP1808_1737BCEP1808_1736BCEP1808_1735BCEP1808_1741BCEP1808_1742BCEP1808_1738BCEP1808_1740
BSP36773 BCEP18194_A5111BCEP18194_A5110BCEP18194_A5109BCEP18194_A5115BCEP18194_A5116BCEP18194_A5112BCEP18194_A5114
BCEN331272 BCEN2424_1810BCEN2424_1809BCEN2424_1808BCEN2424_1814BCEN2424_1815BCEN2424_1811BCEN2424_1813
BCEN331271 BCEN_6269BCEN_6270BCEN_6271BCEN_6265BCEN_6264BCEN_6268BCEN_6266
BAMB398577 BAMMC406_1721BAMMC406_1720BAMMC406_1719BAMMC406_1725BAMMC406_1726BAMMC406_1722BAMMC406_1724
BAMB339670 BAMB_1748BAMB_1747BAMB_1746BAMB_1752BAMB_1753BAMB_1749BAMB_1751
ASP76114 EBA1259EBA1258EBA1256EBA1268EBB37EBA1260EBA1261EBA1262
ASP62977 ACIAD0563ACIAD0564ACIAD0565ACIAD0557ACIAD0556ACIAD0562ACIAD0561ACIAD0560
ASP62928 AZO0929AZO0930AZO0931AZO0924AZO0923AZO0928AZO0927AZO0926
ASAL382245 ASA_2597ASA_2596ASA_2595ASA_2602ASA_2603ASA_2598ASA_2599ASA_2600
APLE434271 APJL_1195APJL_0424APJL_1285APJL_0367APJL_1196APJL_1198APJL_1199
APLE416269 APL_1174APL_0403APL_1274APL_0351APL_1175APL_1176APL_1177
AHYD196024 AHA_1761AHA_1762AHA_1763AHA_1756AHA_1755AHA_1760AHA_1759AHA_1758
AFER243159 AFE_1155AFE_1154AFE_1153AFE_1160AFE_1161AFE_1156AFE_1157AFE_1158
AEHR187272 MLG_1253MLG_1254MLG_0596MLG_1249MLG_1248MLG_1252MLG_1251
ACRY349163 ACRY_0751ACRY_0750ACRY_2700ACRY_1311ACRY_1013ACRY_1012ACRY_1011
ABOR393595 ABO_1858ABO_1857ABO_1856ABO_1863ABO_1864ABO_1859ABO_1860ABO_1861
AAVE397945 AAVE_1426AAVE_1427AAVE_1428AAVE_1421AAVE_1420AAVE_1425AAVE_1423


Organism features enriched in list (features available for 138 out of the 144 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.0000475892
Disease:Bubonic_plague 0.000161766
Disease:Dysentery 0.000161766
Disease:Gastroenteritis 0.00005721013
Disease:Legionnaire's_disease 0.003035844
Endospores:No 0.000015930211
GC_Content_Range4:0-40 4.766e-1712213
GC_Content_Range4:40-60 7.481e-1389224
GC_Content_Range7:30-40 1.657e-1012166
GC_Content_Range7:40-50 0.004621438117
GC_Content_Range7:50-60 7.629e-1051107
Genome_Size_Range5:0-2 2.312e-164155
Genome_Size_Range5:2-4 0.000036928197
Genome_Size_Range5:4-6 7.926e-1987184
Genome_Size_Range5:6-10 0.00359481947
Genome_Size_Range9:1-2 1.842e-124128
Genome_Size_Range9:2-3 0.000137614120
Genome_Size_Range9:4-5 2.354e-84596
Genome_Size_Range9:5-6 4.256e-84288
Genome_Size_Range9:6-8 0.00057481838
Gram_Stain:Gram_Neg 2.069e-24127333
Habitat:Multiple 0.000689357178
Habitat:Terrestrial 0.0090864231
Motility:No 9.320e-128151
Motility:Yes 7.112e-14101267
Oxygen_Req:Anaerobic 4.690e-94102
Oxygen_Req:Facultative 4.403e-1485201
Pathogenic_in:No 0.000597238226
Shape:Coccus 1.562e-8282
Shape:Rod 6.708e-14118347
Shape:Spiral 0.0046837234
Temp._range:Mesophilic 0.0038560122473
Temp._range:Psychrophilic 0.006219969
Temp._range:Thermophilic 0.0006611135



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 77
Effective number of orgs (counting one per cluster within 468 clusters): 72

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
TWHI218496 ncbi Tropheryma whipplei TW08/271
TWHI203267 ncbi Tropheryma whipplei Twist1
TVOL273116 ncbi Thermoplasma volcanium GSS10
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols1
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TDEN243275 ncbi Treponema denticola ATCC 354051
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
SSOL273057 ncbi Sulfolobus solfataricus P21
SMAR399550 ncbi Staphylothermus marinus F11
SARE391037 ncbi Salinispora arenicola CNS-2051
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6391
RTYP257363 ncbi Rickettsia typhi Wilmington1
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332091
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257451
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PHOR70601 ncbi Pyrococcus horikoshii OT30
PFUR186497 ncbi Pyrococcus furiosus DSM 36381
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PAER178306 ncbi Pyrobaculum aerophilum IM20
PACN267747 ncbi Propionibacterium acnes KPA1712021
PABY272844 ncbi Pyrococcus abyssi GE51
OTSU357244 ncbi Orientia tsutsugamushi Boryong1
NSP35761 Nocardioides sp.1
MSYN262723 ncbi Mycoplasma synoviae 530
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-21
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C61
MMAR426368 ncbi Methanococcus maripaludis C71
MMAR402880 ncbi Methanococcus maripaludis C51
MMAR368407 ncbi Methanoculleus marisnigri JR10
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV191
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26611
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-11
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBAR269797 ncbi Methanosarcina barkeri Fusaro1
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A1
LXYL281090 ncbi Leifsonia xyli xyli CTCB071
KRAD266940 ncbi Kineococcus radiotolerans SRS302161
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I1
HWAL362976 ncbi Haloquadratum walsbyi DSM 167901
HBUT415426 ncbi Hyperthermus butylicus DSM 54561
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3821
CMIC31964 ncbi Clavibacter michiganensis sepedonicus1
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
BXEN266265 ncbi Burkholderia xenovorans LB4001
BTUR314724 ncbi Borrelia turicatae 91E1350
BHER314723 ncbi Borrelia hermsii DAH0
BGAR290434 ncbi Borrelia garinii PBi0
BBUR224326 ncbi Borrelia burgdorferi B310
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP1667 Arthrobacter sp.1
APER272557 ncbi Aeropyrum pernix K11
AAUR290340 ncbi Arthrobacter aurescens TC11


Names of the homologs of the genes in the group in each of these orgs
  G7321   G7320   G7319   EG12401   EG10650   EG10453   EG10370   EG10015   
UURE95667
UURE95664
UPAR505682
TWHI218496 TW0559
TWHI203267 TW186
TVOL273116
TPEN368408
TPAL243276 TP_0446
TKOD69014
TDEN243275 TDE_1265
TACI273075
SSOL273057 SSO0230
SMAR399550 SMAR_0828
SARE391037 SARE_1304
SACI330779 SACI_0696
RTYP257363 RT0077
RSAL288705 RSAL33209_0641
PPEN278197 PEPE_1116
PISL384616
PHOR70601
PFUR186497 PF0931
PAST100379
PARS340102
PAER178306
PACN267747 PPA1506
PABY272844 PAB1489
OTSU357244 OTBS_1862
NSP35761 NOCA_3202
MSYN262723
MSED399549
MPUL272635
MPNE272634
MPEN272633 MYPE9400
MMYC272632
MMOB267748
MMAZ192952
MMAR444158 MMARC6_0670
MMAR426368 MMARC7_1297
MMAR402880 MMARC5_1390
MMAR368407
MLAB410358
MKAN190192 MK1591
MJAN243232 MJ_1265
MHYO295358
MHYO262722
MHYO262719
MHUN323259 MHUN_1604
MGEN243273
MFLO265311
MCAP340047
MBUR259564
MBAR269797 MBAR_A2782
MART243272
MAEO419665
MACE188937 MA0850
LXYL281090 LXX12200
KRAD266940 KRAD_1429
IHOS453591 IGNI_0725
HWAL362976 HQ3060A
HBUT415426 HBUT_0549
CSUL444179
CMIC443906 CMM_2156
CMIC31964 CMS1849
CMET456442
CMAQ397948
CKOR374847
BXEN266265 BXE_B2415
BTUR314724
BHER314723
BGAR290434
BBUR224326
BAFZ390236
AYEL322098
AURANTIMONAS
ASP1667 ARTH_1404
APER272557 APE2377
AAUR290340 AAUR_1546


Organism features enriched in list (features available for 71 out of the 77 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.0012069392
Arrangment:Singles 0.000020251286
Endospores:No 2.999e-2061211
Endospores:Yes 0.0059081153
GC_Content_Range4:0-40 0.006497335213
GC_Content_Range4:60-100 0.00384059145
GC_Content_Range7:0-30 2.612e-82047
GC_Content_Range7:60-70 0.00052216134
Genome_Size_Range5:0-2 2.370e-1245155
Genome_Size_Range5:4-6 8.783e-76184
Genome_Size_Range9:0-1 8.219e-121827
Genome_Size_Range9:1-2 0.000464927128
Genome_Size_Range9:4-5 0.0007549396
Genome_Size_Range9:5-6 0.0019083388
Gram_Stain:Gram_Neg 4.081e-721333
Gram_Stain:Gram_Pos 0.005736310150
Habitat:Aquatic 0.00897981891
Habitat:Multiple 0.00003878178
Habitat:Specialized 0.00450121353
Motility:No 0.002955628151
Optimal_temp.:- 0.000658219257
Optimal_temp.:100 0.001739633
Optimal_temp.:85 0.000203944
Oxygen_Req:Anaerobic 1.541e-628102
Pathogenic_in:Animal 0.0057915266
Pathogenic_in:Human 0.006266317213
Shape:Irregular_coccus 7.128e-101317
Shape:Rod 7.495e-1117347
Shape:Sphere 1.200e-111519
Temp._range:Hyperthermophilic 9.980e-101523
Temp._range:Mesophilic 0.000632147473



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181310.6435
AST-PWY (arginine degradation II (AST pathway))120910.6108
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951180.5988
GLYCOCAT-PWY (glycogen degradation I)2461300.5697
ECASYN-PWY (enterobacterial common antigen biosynthesis)1911100.5438
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3001400.5384
PWY-5755 (4-hydroxybenzoate biosynthesis II (bacteria and fungi))81660.5352
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251190.5311
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)1761030.5270
PWY-5918 (heme biosynthesis I)2721290.5077
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2901330.5036
PWY-1269 (CMP-KDO biosynthesis I)3251410.5022
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2911330.5017
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2961340.5000
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2861310.4958
PWY-5386 (methylglyoxal degradation I)3051350.4913
GLUCONSUPER-PWY (D-gluconate degradation)2291140.4823
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491180.4699
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491180.4699
PWY-5861 (superpathway of demethylmenaquinone-8 biosynthesis)50450.4687
PWY-5913 (TCA cycle variation IV)3011310.4680
NAGLIPASYN-PWY (lipid IVA biosynthesis)3481410.4644
PWY-4041 (γ-glutamyl cycle)2791250.4633
GALACTITOLCAT-PWY (galactitol degradation)73560.4632
GLUTATHIONESYN-PWY (glutathione biosynthesis)3391380.4560
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)149850.4513
P184-PWY (protocatechuate degradation I (meta-cleavage pathway))94640.4497
PWY-5857 (ubiquinone-10 biosynthesis (prokaryotic))183950.4406
PWY-5148 (acyl-CoA hydrolysis)2271080.4394
PWY-46 (putrescine biosynthesis III)138790.4319
GLUCARDEG-PWY (D-glucarate degradation I)152830.4244
PWY-5855 (ubiquinone-7 biosynthesis (prokaryotic))191950.4199
PWY0-1182 (trehalose degradation II (trehalase))70510.4198
TYRFUMCAT-PWY (tyrosine degradation I)184920.4129
GLUTDEG-PWY (glutamate degradation II)194950.4124
PWY0-541 (cyclopropane fatty acid (CFA) biosynthesis)3001220.4013



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G7320   G7319   EG12401   EG10650   EG10453   EG10370   EG10015   
G73210.999860.9997940.999720.999640.9998560.9996820.999741
G73200.9998960.9996750.9996120.9997840.9995890.999689
G73190.9995960.9996620.9997010.9994820.999636
EG124010.9997460.9996720.9996490.999774
EG106500.9995720.9993260.999652
EG104530.999740.99976
EG103700.999748
EG10015



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PAIRWISE BLAST SCORES:

  G7321   G7320   G7319   EG12401   EG10650   EG10453   EG10370   EG10015   
G73210.0f0-------
G7320-0.0f0------
G7319--0.0f0-----
EG12401---0.0f0----
EG10650----0.0f0---
EG10453-----0.0f0--
EG10370------0.0f0-
EG10015-------0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10015 EG10370 EG10453 EG10650 EG12401 G7319 G7320 G7321 (centered at EG10370)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7321   G7320   G7319   EG12401   EG10650   EG10453   EG10370   EG10015   
182/623237/623415/623408/623424/623403/623407/623163/623
AAEO224324:0:Tyes--1269214-01001-
AAUR290340:2:Tyes------0-
AAVE397945:0:Tyes678105-3
ABAC204669:0:Tyes---36226850218-
ABAU360910:0:Tyes210673--
ABOR393595:0:Tyes21078345
ABUT367737:0:Tyes---0232904595-
ACAU438753:0:Tyes--362303443-3885-
ACEL351607:0:Tyes---7880-774-
ACRY349163:8:Tyes-101959560263262261
ADEH290397:0:Tyes-15315112812602468-
AEHR187272:0:Tyes6526530648647651-650
AFER243159:0:Tyes21078345
AFUL224325:0:Tyes-625--0---
AHYD196024:0:Tyes67810543
ALAI441768:0:Tyes---0-567--
AMAR234826:0:Tyes-41--301-0-
AMAR329726:9:Tyes--5722-35434820-
AMET293826:0:Tyes--497419-0320-
ANAE240017:0:Tyes---4--0-
AORE350688:0:Tyes--033-307121-
APER272557:0:Tyes----0---
APHA212042:0:Tyes-257--10330306-
APLE416269:0:Tyes822-529200823824825
APLE434271:0:Tno807-558970808810811
ASAL382245:5:Tyes21067345
ASP1667:3:Tyes------0-
ASP232721:2:Tyes678105--
ASP62928:0:Tyes67810543
ASP62977:0:Tyes67810543
ASP76114:2:Tyes21078345
AVAR240292:3:Tyes--2472-3004-0-
BABO262698:1:Tno--3070599-1617-
BAMB339670:3:Tno210673-5
BAMB398577:3:Tno210673-5
BAMY326423:0:Tyes--5420531908779-
BANT260799:0:Tno--022821128632746-
BANT261594:2:Tno--022551128602737-
BANT568206:2:Tyes--24210241039543826-
BANT592021:2:Tno--024131130272898-
BAPH198804:0:Tyes306-3050-21-
BAPH372461:0:Tyes218--0-1--
BBAC264462:0:Tyes-1203-02863343--
BBAC360095:0:Tyes---7840---
BBRO257310:0:Tyes210673--
BCAN483179:1:Tno--2940605-1676-
BCEN331271:0:Tno567104-2
BCEN331272:3:Tyes210673-5
BCER226900:1:Tyes--023011128292708-
BCER288681:0:Tno--022211127422625-
BCER315749:1:Tyes--012031117941684-
BCER405917:1:Tyes--021431127022576-
BCER572264:1:Tno--023781129182793-
BCIC186490:0:Tyes-34-021-
BCLA66692:0:Tyes--305-3190132-
BFRA272559:1:Tyes-252828510--3114-
BFRA295405:0:Tno-273630530--3345-
BHAL272558:0:Tyes--39112594070150-
BHEN283166:0:Tyes---0504---
BJAP224911:0:Fyes-5737354903615-417-
BLIC279010:0:Tyes--61406031057864-
BLON206672:0:Tyes---1391--0-
BMAL243160:1:Tno210673--
BMAL320388:1:Tno320784--
BMAL320389:1:Tyes320784--
BMEL224914:1:Tno--131116321016-0-
BMEL359391:1:Tno--2910583-1561-
BOVI236:1:Tyes--2760545-1464-
BPAR257311:0:Tno210563--
BPER257313:0:Tyes210673--
BPET94624:0:Tyes567104--
BPSE272560:1:Tyes567104--
BPSE320372:1:Tno320784--
BPSE320373:1:Tno210673--
BPUM315750:0:Tyes--5300519-750-
BQUI283165:0:Tyes--2580408---
BSP107806:2:Tyes318-3170-21-
BSP36773:2:Tyes210673-5
BSP376:0:Tyes-3453-02924-274-
BSUB:0:Tyes--73607251221966-
BSUI204722:1:Tyes--2850590-1643-
BSUI470137:0:Tno------0-
BSUI470137:1:Tno--3150619---
BTHA271848:1:Tno567104--
BTHE226186:0:Tyes--13451887--0-
BTHU281309:1:Tno--022051127342617-
BTHU412694:1:Tno--020281025042394-
BTRI382640:1:Tyes---0720---
BVIE269482:7:Tyes210673-5
BWEI315730:4:Tyes--021831127352619-
BXEN266265:1:Tyes-0------
CABO218497:0:Tyes----0-280-
CACE272562:1:Tyes--015--85-
CAULO:0:Tyes-1542154301587-722-
CBEI290402:0:Tyes--015-40463-
CBLO203907:0:Tyes--0-21--
CBLO291272:0:Tno--03412-
CBOT36826:1:Tno--9781-6330-
CBOT441770:0:Tyes--10084-7780-
CBOT441771:0:Tno--10084-6670-
CBOT441772:1:Tno--9580-6140-
CBOT498213:1:Tno--9883-7250-
CBOT508765:1:Tyes--167183-0231-
CBOT515621:2:Tyes--10187-6570-
CBOT536232:0:Tno--10185-7150-
CBUR227377:1:Tyes2-06123-4
CBUR360115:1:Tno2-07133-4
CBUR434922:2:Tno2-07133-4
CCAV227941:1:Tyes----0-299-
CCHL340177:0:Tyes---62401270146-
CCON360104:2:Tyes---16200600316-
CCUR360105:0:Tyes---015759631208-
CDES477974:0:Tyes--1046-0776505-
CDIF272563:1:Tyes--503454-6120-
CDIP257309:0:Tyes-----0139-
CEFF196164:0:Fyes---151-0147-
CFEL264202:1:Tyes----309-0-
CFET360106:0:Tyes---15360-730-
CGLU196627:0:Tyes-----0330-
CHOM360107:1:Tyes---718482-0-
CHUT269798:0:Tyes---9091427-0-
CHYD246194:0:Tyes--16551229019351513-
CJAP155077:0:Tyes67810543
CJEI306537:0:Tyes---131-0127-
CJEJ192222:0:Tyes---13590-349-
CJEJ195099:0:Tno---14560-394-
CJEJ354242:2:Tyes---13000-335-
CJEJ360109:0:Tyes---719281-0-
CJEJ407148:0:Tno---13500-359-
CKLU431943:1:Tyes--017-176069-
CMIC31964:2:Tyes------0-
CMIC443906:2:Tyes------0-
CMUR243161:1:Tyes----454-0-
CNOV386415:0:Tyes--406393-0293-
CPEL335992:0:Tyes----201-0-
CPER195102:1:Tyes--6348-2470-
CPER195103:0:Tno--6247-2340-
CPER289380:3:Tyes--6247-2310-
CPHY357809:0:Tyes--18171915-02047-
CPNE115711:1:Tyes----0-252-
CPNE115713:0:Tno----249-0-
CPNE138677:0:Tno----252-0-
CPNE182082:0:Tno----265-0-
CPRO264201:0:Fyes---333017380-
CPSY167879:0:Tyes32089456
CRUT413404:0:Tyes--278102763-
CSAL290398:0:Tyes67810543
CSP501479:7:Fyes---0----
CSP501479:8:Fyes-02-415-872-
CSP78:2:Tyes-2319232002360-770-
CTEP194439:0:Tyes--152493217400--
CTET212717:0:Tyes--080--125-
CTRA471472:0:Tyes----456-0-
CTRA471473:0:Tno----456-0-
CVES412965:0:Tyes--253102513-
CVIO243365:0:Tyes210783-5
DARO159087:0:Tyes21078345
DDES207559:0:Tyes---2998144802230-
DETH243164:0:Tyes-9961342-3780354-
DGEO319795:1:Tyes-891-01049---
DHAF138119:0:Tyes--20912531022722377-
DNOD246195:0:Tyes4560-3-2
DOLE96561:0:Tyes--14741656197201399-
DPSY177439:2:Tyes---141714300621-
DRAD243230:3:Tyes-1362-5492079-0-
DRED349161:0:Tyes--1048160206481854-
DSHI398580:5:Tyes-152602167185-18-
DSP216389:0:Tyes-9401223-3670344-
DSP255470:0:Tno-8721153-2790256-
DVUL882:1:Tyes---155298220130-
ECAN269484:0:Tyes-0--374192--
ECAR218491:0:Tyes21078345
ECHA205920:0:Tyes-40-582---
ECOL199310:0:Tno21068345
ECOL316407:0:Tno21067345
ECOL331111:6:Tno21067345
ECOL362663:0:Tno21067345
ECOL364106:1:Tno21068345
ECOL405955:2:Tyes21067345
ECOL409438:6:Tyes21067345
ECOL413997:0:Tno21067345
ECOL439855:4:Tno21067345
ECOL469008:0:Tno56710432
ECOL481805:0:Tno56710432
ECOL585034:0:Tno21078356
ECOL585035:0:Tno21078356
ECOL585055:0:Tno21078356
ECOL585056:2:Tno21067345
ECOL585057:0:Tno21078356
ECOL585397:0:Tno21078356
ECOL83334:0:Tno21067345
ECOLI:0:Tno21078356
ECOO157:0:Tno21067345
EFAE226185:3:Tyes--0451-385--
EFER585054:1:Tyes56710432
ELIT314225:0:Tyes-366013631579-1884-
ERUM254945:0:Tyes-46--4242480-
ERUM302409:0:Tno-4648-4242500-
ESP42895:1:Tyes21067345
FALN326424:0:Tyes---4--0-
FJOH376686:0:Tyes-3610103206---
FMAG334413:1:Tyes--124---0-
FNOD381764:0:Tyes---167901436923-
FNUC190304:0:Tyes--0356-128308-
FPHI484022:1:Tyes70170001340160576--
FRANT:0:Tno11111011719403070--
FSP106370:0:Tyes-0-1572--1568-
FSP1855:0:Tyes---0--4-
FSUC59374:0:Tyes----109-0-
FTUL351581:0:Tno1157115805397891239--
FTUL393011:0:Tno1036103704967281110--
FTUL393115:0:Tyes11010911539293010--
FTUL401614:0:Tyes1265126617267001375--
FTUL418136:0:Tno11211153372713200--
FTUL458234:0:Tno1074107505237441151--
GBET391165:0:Tyes-1848184901593159158-
GFOR411154:0:Tyes---0437---
GKAU235909:1:Tyes--10670105514191312-
GMET269799:1:Tyes--974133813395730-
GOXY290633:5:Tyes-19221923218188001-
GSUL243231:0:Tyes--111010546345-
GTHE420246:1:Tyes--11030109214461345-
GURA351605:0:Tyes--1556103011217-
GVIO251221:0:Tyes--253113850-2951-
HACI382638:1:Tyes----0-323-
HARS204773:0:Tyes6781054-
HAUR316274:2:Tyes-4760749----
HBUT415426:0:Tyes----0---
HCHE349521:0:Tyes21078345
HDUC233412:0:Tyes642-7620653641640639
HHAL349124:0:Tyes1668166746016721673166901670
HHEP235279:0:Tyes----0-132-
HINF281310:0:Tyes239-0234751238237236
HINF374930:0:Tyes0-24961128134
HINF71421:0:Tno222-0217726221220219
HMAR272569:8:Tyes-2770--0---
HMOD498761:0:Tyes--6828330544963-
HMUK485914:1:Tyes-0--1955---
HNEP81032:0:Tyes-15115226621620-0-
HPY:0:Tno----0-434-
HPYL357544:1:Tyes----0-421-
HPYL85963:0:Tno----0-379-
HSAL478009:2:Tyes-0------
HSAL478009:4:Tyes----0---
HSOM205914:1:Tyes19-9408130181716
HSOM228400:0:Tno446-073427445444443
HSP64091:1:Tno-0------
HSP64091:2:Tno----0---
HWAL362976:1:Tyes-0------
IHOS453591:0:Tyes----0---
ILOI283942:0:Tyes21078345
JSP290400:1:Tyes-1946191601564-1679-
JSP375286:0:Tyes21078345
KPNE272620:2:Tyes21078345
KRAD266940:2:Fyes------0-
LACI272621:0:Tyes--31--0--
LBIF355278:2:Tyes----0-1136-
LBIF456481:2:Tno----0-1178-
LBOR355276:1:Tyes----0-1966-
LBOR355277:1:Tno----1906-0-
LBRE387344:2:Tyes--43--0--
LCAS321967:1:Tyes--0--145--
LCHO395495:0:Tyes210783-5
LDEL321956:0:Tyes--0--32--
LDEL390333:0:Tyes--0--32--
LGAS324831:0:Tyes--34--0--
LHEL405566:0:Tyes--36--0--
LINN272626:1:Tno--522-5140--
LINT189518:1:Tyes----1021-0-
LINT267671:1:Tno----2326-0-
LINT363253:3:Tyes---65310949590-
LJOH257314:0:Tyes--0--245--
LLAC272622:5:Tyes--5770-1921--
LLAC272623:0:Tyes--0--1212--
LMES203120:1:Tyes--0--18--
LMON169963:0:Tno--523-515790-
LMON265669:0:Tyes--501-493790-
LPLA220668:0:Tyes--0--89-381
LPNE272624:0:Tno210673-4
LPNE297245:1:Fno567104-3
LPNE297246:1:Fyes210673-4
LPNE400673:0:Tno210673-4
LREU557436:0:Tyes--0--1095--
LSAK314315:0:Tyes--154--0--
LSPH444177:1:Tyes---043122812039-
LWEL386043:0:Tyes--430-4220--
LXYL281090:0:Tyes------0-
MABS561007:1:Tyes-----0299-
MACE188937:0:Tyes-0------
MAER449447:0:Tyes--0-5637932755-
MAQU351348:2:Tyes67810543
MAVI243243:0:Tyes-----0261-
MBAR269797:1:Tyes-0------
MBOV233413:0:Tno-----0286-
MBOV410289:0:Tno-----0289-
MCAP243233:0:Tyes14601461146214571456145910710
MEXT419610:0:Tyes--243843416-0-
MFLA265072:0:Tyes210910567
MGIL350054:3:Tyes----011821456-
MHUN323259:0:Tyes----0---
MJAN243232:2:Tyes----0---
MKAN190192:0:Tyes----0---
MLEP272631:0:Tyes-----0679-
MLOT266835:2:Tyes--29184293323-0-
MMAG342108:0:Tyes2182192200--492-
MMAR267377:0:Tyes-11--0---
MMAR394221:0:Tyes-1171117201203-22242225
MMAR402880:1:Tyes----0---
MMAR426368:0:Tyes-0------
MMAR444158:0:Tyes----0---
MPEN272633:0:Tyes------0-
MPET420662:1:Tyes21078345
MSME246196:0:Tyes-----3920-
MSP164756:1:Tno-----2450-
MSP164757:0:Tno-----3000-
MSP189918:2:Tyes-----2460-
MSP266779:3:Tyes--021811307-2662-
MSP400668:0:Tyes67810543
MSP409:2:Tyes--018781682-2367-
MSTA339860:0:Tyes-0--430---
MSUC221988:0:Tyes1294-7112890129312921291
MTBCDC:0:Tno-----0295-
MTBRV:0:Tno-----0291-
MTHE187420:0:Tyes-1226--0---
MTHE264732:0:Tyes---77801534912-
MTHE349307:0:Tyes-538--0---
MTUB336982:0:Tno-----0284-
MTUB419947:0:Tyes-----0296-
MVAN350058:0:Tyes-----3260-
MXAN246197:0:Tyes-21321110173--
NARO279238:0:Tyes-66057811616100128-
NEUR228410:0:Tyes78910643
NEUT335283:2:Tyes21078345
NFAR247156:2:Tyes-----0462-
NGON242231:0:Tyes--01591602157-
NHAM323097:2:Tyes--100728901428-0-
NMEN122586:0:Tno1-04334322435-
NMEN122587:0:Tyes1-04154142417-
NMEN272831:0:Tno1-03843832386-
NMEN374833:0:Tno1-04074062409-
NMUL323848:3:Tyes210673-5
NOCE323261:1:Tyes012818083905-
NPHA348780:2:Tyes-546--0---
NSEN222891:0:Tyes----0-232-
NSP103690:6:Tyes--0---2037-
NSP35761:1:Tyes------0-
NSP387092:0:Tyes---0355793297-
NWIN323098:0:Tyes---23341116-0-
OANT439375:5:Tyes--41002555-1049-
OCAR504832:0:Tyes--22671792228-0-
OIHE221109:0:Tyes--10-0239--
OTSU357244:0:Fyes----0---
PABY272844:0:Tyes----0---
PACN267747:0:Tyes------0-
PAER208963:0:Tyes67810543
PAER208964:0:Tno21078345
PARC259536:0:Tyes-781054-
PATL342610:0:Tyes21078345
PCAR338963:0:Tyes--36599399401342-
PCRY335284:1:Tyes-891065-
PDIS435591:0:Tyes--22350--2973-
PENT384676:0:Tyes67810543
PFLU205922:0:Tyes21078345
PFLU216595:1:Tyes21078345
PFLU220664:0:Tyes21078345
PFUR186497:0:Tyes----0---
PGIN242619:0:Tyes--1034963--0-
PHAL326442:0:Tyes21078345
PING357804:0:Tyes56702012432
PINT246198:1:Tyes--01169--465-
PLUM243265:0:Fyes67810543
PLUT319225:0:Tyes----015231695-
PMAR146891:0:Tyes-----052-
PMAR167539:0:Tyes--01266-396636-
PMAR167540:0:Tyes-----054-
PMAR167542:0:Tyes-----062-
PMAR167546:0:Tyes-----079-
PMAR167555:0:Tyes--39718480635686-
PMAR59920:0:Tno--16999661340049-
PMAR74546:0:Tyes-----054-
PMAR74547:0:Tyes--0--1735584-
PMAR93060:0:Tyes-----057-
PMEN399739:0:Tyes21078345
PMOB403833:0:Tyes---107-0143-
PMUL272843:1:Tyes1907-01902923190619051904
PNAP365044:8:Tyes678105--
PPEN278197:0:Tyes-----0--
PPRO298386:2:Tyes67810543
PPUT160488:0:Tno67810543
PPUT351746:0:Tyes67810543
PPUT76869:0:Tno67810543
PRUM264731:0:Tyes--77---0-
PSP117:0:Tyes---61035482-0-
PSP296591:2:Tyes210783-5
PSP312153:0:Tyes-105634-
PSP56811:2:Tyes-1460152153148149150
PSTU379731:0:Tyes21078345
PSYR205918:0:Tyes67810543
PSYR223283:2:Tyes67810543
PTHE370438:0:Tyes--1452163008851099-
PTOR263820:0:Tyes-0--270---
RAKA293614:0:Fyes--903-0344--
RALB246199:0:Tyes-----15860-
RBEL336407:0:Tyes--0-1169328--
RBEL391896:0:Fno--1137-0427--
RCAN293613:0:Fyes--844-0---
RCAS383372:0:Tyes-013471405----
RCON272944:0:Tno--974-0336--
RDEN375451:4:Tyes--149102730-2460-
RETL347834:5:Tyes--162024320-2511-
REUT264198:3:Tyes21078345
REUT381666:2:Tyes21078345
RFEL315456:2:Tyes--131-0385--
RFER338969:1:Tyes2107834-
RLEG216596:6:Tyes--196929400-3048-
RMAS416276:1:Tyes--733-0270--
RMET266264:2:Tyes21078345
RPAL258594:0:Tyes--271102672-125-
RPAL316055:0:Tyes--327803221-144-
RPAL316056:0:Tyes--224202281-459-
RPAL316057:0:Tyes--27184032674-0-
RPAL316058:0:Tyes--237902416-436-
RPOM246200:1:Tyes-08031795913-1059-
RPRO272947:0:Tyes-175--0---
RRIC392021:0:Fno--954-0---
RRIC452659:0:Tyes--993-0355--
RRUB269796:1:Tyes-232923282572141810-
RSAL288705:0:Tyes------0-
RSOL267608:1:Tyes678105-3
RSP101510:3:Fyes-----3140-
RSP357808:0:Tyes-877610----
RSPH272943:4:Tyes-011736206-296-
RSPH349101:2:Tno-1316131701502-1593-
RSPH349102:5:Tyes-2098209701075-1799-
RTYP257363:0:Tno----0---
RXYL266117:0:Tyes-----065-
SACI330779:0:Tyes----0---
SACI56780:0:Tyes---439-0129794
SAGA205921:0:Tno--10480-1451--
SAGA208435:0:Tno--11340-1619--
SAGA211110:0:Tyes---0-1532--
SALA317655:1:Tyes-152315220107320371162-
SARE391037:0:Tyes------0-
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