CANDIDATE ID: 93

CANDIDATE ID: 93

NUMBER OF GENES: 7
AVERAGE SCORE:    9.9960095e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.4285714e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G6780 (ddpB) (b1486)
   Products of gene:
     - YDDR-MONOMER (YddR)
     - ABC-59-CPLX (YddO/YddP/YddQ/YddR/YddS ABC transporter)

- G6431 (gsiC) (b0831)
   Products of gene:
     - YLIC-MONOMER (GsiC)
     - ABC-49-CPLX (gsiABCD glutathione ABC transporter)
       Reactions:
        glutathione[periplasmic space] + ATP + H2O  ->  glutathione[cytosol] + ADP + phosphate

- G2001 (sapB) (b1293)
   Products of gene:
     - SAPB-MONOMER (SapB)
     - ABC-29-CPLX (peptide uptake ABC transporter)
       Reactions:
        ATP + a peptide[periplasmic space] + H2O  ->  ADP + phosphate + a peptide[cytosol]

- G2000 (sapC) (b1292)
   Products of gene:
     - SAPC-MONOMER (SapC)
     - ABC-29-CPLX (peptide uptake ABC transporter)
       Reactions:
        ATP + a peptide[periplasmic space] + H2O  ->  ADP + phosphate + a peptide[cytosol]

- EG12626 (dppC) (b3542)
   Products of gene:
     - DPPC-MONOMER (DppC)
     - ABC-8-CPLX (dipeptide ABC transporter)
       Reactions:
        ATP + a dipeptide[periplasmic space] + H2O  ->  ADP + phosphate + a dipeptide[cytosol]

- EG12625 (dppB) (b3543)
   Products of gene:
     - DPPB-MONOMER (DppB)
     - ABC-8-CPLX (dipeptide ABC transporter)
       Reactions:
        ATP + a dipeptide[periplasmic space] + H2O  ->  ADP + phosphate + a dipeptide[cytosol]

- EG12076 (nikB) (b3477)
   Products of gene:
     - NIKB-MONOMER (NikB)
     - ABC-20-CPLX (nickel ABC transporter)
       Reactions:
        Ni2+[periplasmic space] + ATP + H2O  ->  Ni2+[cytosol] + ADP + phosphate



Back to top


ORGANISMS CONTAINING AT LEAST 6 GENES FROM THE GROUP:

Total number of orgs: 155
Effective number of orgs (counting one per cluster within 468 clusters): 104

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
VEIS391735 ncbi Verminephrobacter eiseniae EF01-27
TTHE300852 ncbi Thermus thermophilus HB86
TTHE262724 ncbi Thermus thermophilus HB277
TROS309801 ncbi Thermomicrobium roseum DSM 51597
TLET416591 ncbi Thermotoga lettingae TMO7
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT27
STRO369723 ncbi Salinispora tropica CNB-4407
STHE292459 ncbi Symbiobacterium thermophilum IAM 148637
SSP644076 Silicibacter sp. TrichCH4B7
SSP292414 ncbi Ruegeria sp. TM10406
SSON300269 ncbi Shigella sonnei Ss0467
SPRO399741 ncbi Serratia proteamaculans 5687
SMEL266834 ncbi Sinorhizobium meliloti 10217
SMED366394 ncbi Sinorhizobium medicae WSM4197
SLAC55218 Ruegeria lacuscaerulensis7
SHIGELLA ncbi Shigella flexneri 2a str. 2457T7
SGLO343509 ncbi Sodalis glossinidius morsitans6
SFLE373384 ncbi Shigella flexneri 5 str. 84017
SFLE198214 ncbi Shigella flexneri 2a str. 3017
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4767
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B677
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91507
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT187
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty27
SDYS300267 ncbi Shigella dysenteriae Sd1977
SBOY300268 ncbi Shigella boydii Sb2277
SARE391037 ncbi Salinispora arenicola CNS-2057
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99417
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170257
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170297
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.17
RSOL267608 ncbi Ralstonia solanacearum GMI10006
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111707
RPOM246200 ncbi Ruegeria pomeroyi DSS-37
RPAL316058 ncbi Rhodopseudomonas palustris HaA26
RPAL258594 ncbi Rhodopseudomonas palustris CGA0096
RMET266264 ncbi Ralstonia metallidurans CH347
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38417
RFER338969 ncbi Rhodoferax ferrireducens T1187
REUT381666 ncbi Ralstonia eutropha H167
RETL347834 ncbi Rhizobium etli CFN 427
RCAS383372 ncbi Roseiflexus castenholzii DSM 139416
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30007
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a7
PSP296591 ncbi Polaromonas sp. JS6667
PPUT76869 ncbi Pseudomonas putida GB-17
PPUT351746 ncbi Pseudomonas putida F17
PPUT160488 ncbi Pseudomonas putida KT24407
PMUL272843 ncbi Pasteurella multocida multocida Pm706
PMEN399739 ncbi Pseudomonas mendocina ymp6
PFLU220664 ncbi Pseudomonas fluorescens Pf-57
PFLU216595 ncbi Pseudomonas fluorescens SBW256
PFLU205922 ncbi Pseudomonas fluorescens Pf0-17
PENT384676 ncbi Pseudomonas entomophila L487
PAER208964 ncbi Pseudomonas aeruginosa PAO16
OIHE221109 ncbi Oceanobacillus iheyensis HTE8316
OCAR504832 ncbi Oligotropha carboxidovorans OM56
OANT439375 ncbi Ochrobactrum anthropi ATCC 491887
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-17
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E7
MSP409 Methylobacterium sp.7
MSP400668 ncbi Marinomonas sp. MWYL17
MSP266779 ncbi Chelativorans sp. BNC17
MSP189918 ncbi Mycobacterium sp. KMS7
MSP164757 ncbi Mycobacterium sp. JLS7
MSP164756 ncbi Mycobacterium sp. MCS7
MLOT266835 ncbi Mesorhizobium loti MAFF3030997
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK6
MACE188937 ncbi Methanosarcina acetivorans C2A7
LSPH444177 ncbi Lysinibacillus sphaericus C3-417
KRAD266940 ncbi Kineococcus radiotolerans SRS302167
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785787
JSP290400 ncbi Jannaschia sp. CCS17
HPYL357544 ncbi Helicobacter pylori HPAG16
HPY ncbi Helicobacter pylori 266957
HINF71421 ncbi Haemophilus influenzae Rd KW206
HINF281310 ncbi Haemophilus influenzae 86-028NP6
HDUC233412 ncbi Haemophilus ducreyi 35000HP6
HACI382638 ncbi Helicobacter acinonychis Sheeba7
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-27
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255866
ESP42895 Enterobacter sp.7
EFER585054 ncbi Escherichia fergusonii ATCC 354697
ECOO157 ncbi Escherichia coli O157:H7 EDL9337
ECOL83334 Escherichia coli O157:H77
ECOL585397 ncbi Escherichia coli ED1a7
ECOL585057 ncbi Escherichia coli IAI397
ECOL585056 ncbi Escherichia coli UMN0267
ECOL585055 ncbi Escherichia coli 559897
ECOL585035 ncbi Escherichia coli S887
ECOL585034 ncbi Escherichia coli IAI17
ECOL481805 ncbi Escherichia coli ATCC 87397
ECOL469008 ncbi Escherichia coli BL21(DE3)7
ECOL439855 ncbi Escherichia coli SMS-3-57
ECOL413997 ncbi Escherichia coli B str. REL6067
ECOL409438 ncbi Escherichia coli SE117
ECOL405955 ncbi Escherichia coli APEC O17
ECOL364106 ncbi Escherichia coli UTI897
ECOL362663 ncbi Escherichia coli 5367
ECOL331111 ncbi Escherichia coli E24377A7
ECOL316407 ncbi Escherichia coli K-12 substr. W31107
ECOL199310 ncbi Escherichia coli CFT0737
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10436
DRED349161 ncbi Desulfotomaculum reducens MI-17
DRAD243230 ncbi Deinococcus radiodurans R17
DHAF138119 ncbi Desulfitobacterium hafniense Y517
DGEO319795 ncbi Deinococcus geothermalis DSM 113006
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G206
CVIO243365 ncbi Chromobacterium violaceum ATCC 124727
CSP501479 Citreicella sp. SE457
CKLU431943 ncbi Clostridium kluyveri DSM 5556
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29016
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C7
BVIE269482 ncbi Burkholderia vietnamiensis G47
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-276
BTHA271848 ncbi Burkholderia thailandensis E2647
BSUI470137 ncbi Brucella suis ATCC 234457
BSUI204722 ncbi Brucella suis 13307
BSP376 Bradyrhizobium sp.7
BSP36773 Burkholderia sp.7
BPUM315750 ncbi Bacillus pumilus SAFR-0327
BPSE320373 ncbi Burkholderia pseudomallei 6687
BPSE320372 ncbi Burkholderia pseudomallei 1710b7
BPSE272560 ncbi Burkholderia pseudomallei K962437
BPET94624 Bordetella petrii7
BPER257313 ncbi Bordetella pertussis Tohama I7
BPAR257311 ncbi Bordetella parapertussis 128227
BMEL359391 ncbi Brucella melitensis biovar Abortus 23087
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M7
BMAL320389 ncbi Burkholderia mallei NCTC 102477
BMAL320388 ncbi Burkholderia mallei SAVP17
BMAL243160 ncbi Burkholderia mallei ATCC 233447
BLIC279010 ncbi Bacillus licheniformis ATCC 145807
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1107
BHAL272558 ncbi Bacillus halodurans C-1257
BCLA66692 ncbi Bacillus clausii KSM-K167
BCER288681 ncbi Bacillus cereus E33L6
BCEN331272 ncbi Burkholderia cenocepacia HI24247
BCEN331271 ncbi Burkholderia cenocepacia AU 10547
BCAN483179 ncbi Brucella canis ATCC 233657
BBRO257310 ncbi Bordetella bronchiseptica RB507
BANT592021 ncbi Bacillus anthracis A02486
BANT568206 ncbi Bacillus anthracis CDC 6846
BANT261594 ncbi Bacillus anthracis Ames Ancestor6
BANT260799 ncbi Bacillus anthracis Sterne6
BAMB398577 ncbi Burkholderia ambifaria MC40-67
BAMB339670 ncbi Burkholderia ambifaria AMMD7
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9417
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL036
APLE416269 ncbi Actinobacillus pleuropneumoniae L206
AORE350688 ncbi Alkaliphilus oremlandii OhILAs6
AMET293826 ncbi Alkaliphilus metalliredigens QYMF7
ACAU438753 ncbi Azorhizobium caulinodans ORS 5717
ABAU360910 ncbi Bordetella avium 197N7
AAVE397945 ncbi Acidovorax citrulli AAC00-16


Names of the homologs of the genes in the group in each of these orgs
  G6780   G6431   G2001   G2000   EG12626   EG12625   EG12076   
VEIS391735 VEIS_4120VEIS_4592VEIS_4120VEIS_3435VEIS_1299VEIS_4120VEIS_0746
TTHE300852 TTHA1337TTHA1337TTHA1337TTHA1632TTHA1338TTHA1337
TTHE262724 TT_C0972TT_C0972TT_C0972TT_C0973TT_C0973TT_C0972TT_C1270
TROS309801 TRD_1861TRD_1524TRD_1279TRD_A0701TRD_1280TRD_1861TRD_1279
TLET416591 TLET_0854TLET_0201TLET_0854TLET_0073TLET_0855TLET_0854TLET_0854
STYP99287 STM3629STM0850STM1693STM1694STM3628STM3629STM0850
STRO369723 STROP_0217STROP_1670STROP_0217STROP_1671STROP_1671STROP_0217STROP_1670
STHE292459 STH2314STH2653STH1108STH2313STH2313STH2314STH1423
SSP644076 SCH4B_2930SCH4B_3732SCH4B_3822SCH4B_0505SCH4B_3405SCH4B_3406SCH4B_3732
SSP292414 TM1040_2715TM1040_2685TM1040_0037TM1040_3601TM1040_0036TM1040_0037
SSON300269 SSO_1638SSO_0813SSO_1847SSO_1848SSO_3848SSO_3847SSO_3715
SPRO399741 SPRO_2348SPRO_1552SPRO_2630SPRO_2631SPRO_0140SPRO_0139SPRO_2348
SMEL266834 SMC01526SMC03127SMC00787SMC00788SMC00788SMC00787SMC00787
SMED366394 SMED_0330SMED_2854SMED_0330SMED_0331SMED_0331SMED_0330SMED_2854
SLAC55218 SL1157_0096SL1157_3372SL1157_0096SL1157_0095SL1157_0095SL1157_0096SL1157_0096
SHIGELLA DPPBS0824SAPBSAPCDPPCDPPBNIKB
SGLO343509 SG0061SG0061SG1507SG1510SG0062SG0061
SFLE373384 SFV_3544SFV_0814SFV_1307SFV_1306SFV_1736SFV_3544SFV_3480
SFLE198214 AAN45029.1AAN42415.1AAN42909.1AAN42908.1AAN45028.1AAN45029.1AAN44954.1
SENT454169 SEHA_C3949SEHA_C0980SEHA_C1879SEHA_C1880SEHA_C3948SEHA_C3949SEHA_C0980
SENT321314 SCH_3560SCH_0845SCH_1686SCH_1687SCH_3559SCH_3560SCH_3560
SENT295319 SPA3486SPA1905SPA1191SPA1182SPA3485SPA3486SPA1905
SENT220341 STY4169STY0889STY1368STY1357STY4170STY4169STY0889
SENT209261 T3886T2039T1598T1608T3887T3886T2039
SDYS300267 SDY_4566SDY_0756SDY_1639SDY_1379SDY_4565SDY_4566SDY_3632
SBOY300268 SBO_1571SBO_0721SBO_1769SBO_1770SBO_3541SBO_3542SBO_3474
SARE391037 SARE_1662SARE_1662SARE_0256SARE_1663SARE_1663SARE_0256SARE_1662
RXYL266117 RXYL_2423RXYL_2423RXYL_3026RXYL_2422RXYL_2422RXYL_2423RXYL_3026
RSPH349102 RSPH17025_3964RSPH17025_3964RSPH17025_3964RSPH17025_3965RSPH17025_3965RSPH17025_3964RSPH17025_3964
RSPH349101 RSPH17029_3970RSPH17029_3970RSPH17029_3970RSPH17029_3971RSPH17029_3971RSPH17029_3970RSPH17029_3970
RSPH272943 RSP_3232RSP_3232RSP_3232RSP_3233RSP_3233RSP_3232RSP_3232
RSOL267608 RSC1381RSC1381RSC1381RSC2868RSC1381RSC1381
RRUB269796 RRU_A2357RRU_A2357RRU_A2357RRU_A2358RRU_A2358RRU_A2357RRU_A2276
RPOM246200 SPO_1544SPO_1211SPO_1544SPO_1545SPO_1545SPO_1544SPO_0100
RPAL316058 RPB_4050RPB_1224RPB_4050RPB_0230RPB_1224RPB_1224
RPAL258594 RPA1472RPA1216RPA1472RPA1448RPA1216RPA1216
RMET266264 RMET_1409RMET_1409RMET_3157RMET_4577RMET_3156RMET_4576RMET_1409
RLEG216596 RL0779RL0779RL0779RL0780RL0780RL0779RL0779
RFER338969 RFER_1953RFER_3104RFER_1953RFER_1952RFER_1952RFER_1953RFER_0984
REUT381666 H16_A2099H16_A2099H16_A3297H16_A2098H16_A2098H16_B0720H16_A2950
RETL347834 RHE_CH03993RHE_PE00341RHE_CH00737RHE_CH00738RHE_CH00738RHE_CH00737RHE_CH00608
RCAS383372 RCAS_3846RCAS_3841RCAS_3840RCAS_3840RCAS_3841RCAS_3841
PSYR223283 PSPTO_4562PSPTO_2575PSPTO_4562PSPTO_4563PSPTO_4563PSPTO_4562PSPTO_2575
PSYR205918 PSYR_4239PSYR_2679PSYR_4239PSYR_4240PSYR_4240PSYR_4239PSYR_2266
PSP296591 BPRO_2812BPRO_0138BPRO_2812BPRO_2813BPRO_2813BPRO_2812BPRO_2812
PPUT76869 PPUTGB1_0924PPUTGB1_0924PPUTGB1_0924PPUTGB1_0923PPUTGB1_0923PPUTGB1_0924PPUTGB1_0924
PPUT351746 PPUT_0920PPUT_0920PPUT_0920PPUT_0919PPUT_0919PPUT_0920PPUT_0920
PPUT160488 PP_0881PP_4455PP_0881PP_0880PP_0880PP_0881PP_3343
PMUL272843 PM0237PM0237PM0912PM0913PM0238PM0237
PMEN399739 PMEN_0840PMEN_0840PMEN_0840PMEN_0839PMEN_0839PMEN_0840
PFLU220664 PFL_4025PFL_4025PFL_0877PFL_0876PFL_0876PFL_0877PFL_4025
PFLU216595 PFLU0822PFLU0822PFLU0822PFLU0821PFLU0821PFLU0822
PFLU205922 PFL_0812PFL_0812PFL_0812PFL_0811PFL_0811PFL_0812PFL_0812
PENT384676 PSEEN1056PSEEN1056PSEEN1056PSEEN1055PSEEN1055PSEEN1056PSEEN1056
PAER208964 PA4503PA4503PA4503PA4504PA4504PA4503
OIHE221109 OB2450OB3068OB2450OB2449OB2449OB2450
OCAR504832 OCAR_7514OCAR_7524OCAR_4432OCAR_4432OCAR_7524OCAR_7514
OANT439375 OANT_1583OANT_0627OANT_1583OANT_1584OANT_1584OANT_1583OANT_1583
MVAN350058 MVAN_3774MVAN_3774MVAN_3774MVAN_3775MVAN_3775MVAN_3774MVAN_3774
MSUC221988 MS1367MS1367MS0855MS0854MS1366MS1367MS0465
MSP409 M446_1691M446_2209M446_1691M446_1692M446_1692M446_1691M446_2973
MSP400668 MMWYL1_0113MMWYL1_0113MMWYL1_0113MMWYL1_0112MMWYL1_0112MMWYL1_0113MMWYL1_4456
MSP266779 MESO_0066MESO_1505MESO_0066MESO_0065MESO_0065MESO_0066MESO_0066
MSP189918 MKMS_3454MKMS_3454MKMS_3454MKMS_3455MKMS_3455MKMS_3454MKMS_3454
MSP164757 MJLS_3402MJLS_3402MJLS_3402MJLS_3403MJLS_3403MJLS_3402MJLS_3402
MSP164756 MMCS_3392MMCS_3392MMCS_3392MMCS_3393MMCS_3393MMCS_3392MMCS_3392
MLOT266835 MLR6671MLR5417MLR5417MLR5418MLR5418MLR5417MLR5417
MGIL350054 MFLV_2760MFLV_2760MFLV_2759MFLV_2759MFLV_2760MFLV_2760
MACE188937 MA4250MA4250MA4250MA1246MA0880MA4250MA4250
LSPH444177 BSPH_0319BSPH_0319BSPH_0319BSPH_0320BSPH_0320BSPH_0319BSPH_2976
KRAD266940 KRAD_2997KRAD_0146KRAD_2997KRAD_3861KRAD_3861KRAD_2997KRAD_2997
KPNE272620 GKPORF_B3251GKPORF_B5299GKPORF_B0329GKPORF_B0316GKPORF_B3250GKPORF_B3251GKPORF_B3195
JSP290400 JANN_2045JANN_4130JANN_2045JANN_4129JANN_4129JANN_4130JANN_4130
HPYL357544 HPAG1_0301HPAG1_0301HPAG1_0302HPAG1_0302HPAG1_0301HPAG1_0301
HPY HP0299HP0299HP0299HP0300HP0300HP0299HP0299
HINF71421 HI_1187HI_1187HI_1639HI_1640HI_1186HI_1187
HINF281310 NTHI1357NTHI1357NTHI1400NTHI1399NTHI1355NTHI1357
HDUC233412 HD_0312HD_0312HD_1231HD_1232HD_0313HD_0312
HACI382638 HAC_0560HAC_0560HAC_0560HAC_0561HAC_0561HAC_0560HAC_0560
GTHE420246 GTNG_0479GTNG_0479GTNG_0479GTNG_0480GTNG_0480GTNG_0479GTNG_0479
FNUC190304 FN0397FN0397FN0397FN0398FN0398FN0397
ESP42895 ENT638_1104ENT638_1325ENT638_2172ENT638_2173ENT638_0186ENT638_0185ENT638_1835
EFER585054 EFER_3540EFER_0972EFER_1661EFER_1662EFER_3539EFER_3540EFER_0972
ECOO157 Z2224Z1055SAPBSAPCDPPCDPPBNIKB
ECOL83334 ECS2090ECS0910ECS1870ECS1869ECS4422ECS4423ECS4344
ECOL585397 ECED1_4222ECED1_0795ECED1_1508ECED1_1507ECED1_4221ECED1_4222ECED1_4150
ECOL585057 ECIAI39_1750ECIAI39_0808ECIAI39_1644ECIAI39_1643ECIAI39_4051ECIAI39_4052ECIAI39_3958
ECOL585056 ECUMN_1740ECUMN_1019ECUMN_1598ECUMN_1597ECUMN_4052ECUMN_4053ECUMN_3958
ECOL585055 EC55989_1618EC55989_0876EC55989_1455EC55989_1454EC55989_3993EC55989_3994EC55989_3885
ECOL585035 ECS88_3963ECS88_0848ECS88_1439ECS88_1438ECS88_3962ECS88_3963ECS88_3880
ECOL585034 ECIAI1_1496ECIAI1_0870ECIAI1_1318ECIAI1_1317ECIAI1_3700ECIAI1_3701ECIAI1_3624
ECOL481805 ECOLC_2171ECOLC_2813ECOLC_2332ECOLC_2333ECOLC_0173ECOLC_0172ECOLC_0239
ECOL469008 ECBD_2153ECBD_2792ECBD_2324ECBD_2325ECBD_0194ECBD_0193ECBD_0264
ECOL439855 ECSMS35_1687ECSMS35_0856ECSMS35_1829ECSMS35_1830ECSMS35_3861ECSMS35_3862ECSMS35_3761
ECOL413997 ECB_01444ECB_00798ECB_01270ECB_01269ECB_03393ECB_03394ECB_03326
ECOL409438 ECSE_1576ECSE_0889ECSE_1345ECSE_1344ECSE_3815ECSE_3816ECSE_3745
ECOL405955 APECO1_2905APECO1_1262APECO1_456APECO1_455APECO1_2906APECO1_2905APECO1_2977
ECOL364106 UTI89_C4081UTI89_C0834UTI89_C1570UTI89_C1569UTI89_C4080UTI89_C4081UTI89_C3994
ECOL362663 ECP_3644ECP_0845ECP_1351ECP_1350ECP_3643ECP_3644ECP_3572
ECOL331111 ECE24377A_1675ECE24377A_0902ECE24377A_1500ECE24377A_1499ECE24377A_4034ECE24377A_4035ECE24377A_3959
ECOL316407 ECK1480:JW1481:B1486ECK0821:JW0815:B0831ECK1288:JW1286:B1293ECK1287:JW1285:B1292ECK3529:JW3511:B3542ECK3530:JW3512:B3543ECK3461:JW3442:B3477
ECOL199310 C4358C0916C1770C1769C4357C4358C4270
ECAR218491 ECA4075ECA2833ECA1976ECA1975ECA4392ECA4393
DRED349161 DRED_0390DRED_2453DRED_2453DRED_2452DRED_2452DRED_2453DRED_2453
DRAD243230 DR_0959DR_0959DR_0959DR_0958DR_0958DR_0959DR_0959
DHAF138119 DSY0503DSY0503DSY0503DSY0504DSY4357DSY0503DSY0503
DGEO319795 DGEO_1190DGEO_1190DGEO_1190DGEO_1191DGEO_1190DGEO_1190
DDES207559 DDE_1184DDE_1184DDE_1183DDE_1183DDE_1184DDE_1184
CVIO243365 CV_1098CV_1098CV_1098CV_1099CV_1099CV_1098CV_1098
CSP501479 CSE45_2493CSE45_4965CSE45_2493CSE45_4964CSE45_2494CSE45_4965CSE45_5425
CKLU431943 CKL_1312CKL_1312CKL_1312CKL_1051CKL_1313CKL_1312
CHYD246194 CHY_1129CHY_1129CHY_1130CHY_1130CHY_1129CHY_1129
CDES477974 DAUD_0386DAUD_0386DAUD_0386DAUD_0387DAUD_0387DAUD_0386DAUD_0386
BVIE269482 BCEP1808_3129BCEP1808_4721BCEP1808_3129BCEP1808_3128BCEP1808_3128BCEP1808_3129BCEP1808_3129
BTHU281309 BT9727_4233BT9727_4233BT9727_4232BT9727_4232BT9727_4233BT9727_4233
BTHA271848 BTH_I0221BTH_II1114BTH_I0221BTH_I0222BTH_I0222BTH_I0221BTH_I0221
BSUI470137 BSUIS_A1640BSUIS_A1640BSUIS_A1640BSUIS_A1639BSUIS_A1639BSUIS_A1640BSUIS_B0795
BSUI204722 BR_1585BR_1585BR_1585BR_1584BR_1584BR_1585BR_A0803
BSP376 BRADO6822BRADO2921BRADO1742BRADO1741BRADO1741BRADO1742BRADO2921
BSP36773 BCEP18194_A6391BCEP18194_B1866BCEP18194_A6391BCEP18194_A6390BCEP18194_A6390BCEP18194_A6391BCEP18194_A6391
BPUM315750 BPUM_0822BPUM_0822BPUM_0822BPUM_0823BPUM_0823BPUM_0822BPUM_3069
BPSE320373 BURPS668_0244BURPS668_A1851BURPS668_0244BURPS668_0245BURPS668_0245BURPS668_0244BURPS668_0244
BPSE320372 BURPS1710B_A0462BURPS1710B_B0388BURPS1710B_A0462BURPS1710B_A0463BURPS1710B_A0463BURPS1710B_A0462BURPS1710B_A0462
BPSE272560 BPSL0250BPSS1305BPSL0250BPSL0251BPSL0251BPSL0250BPSL0250
BPET94624 BPET1795BPET1795BPET1795BPET2850BPET2850BPET2851BPET0355
BPER257313 BP2395BP2395BP2395BP2592BP2394BP2395BP3299
BPAR257311 BPP3260BPP3260BPP3260BPP1445BPP1445BPP3260BPP4124
BMEL359391 BAB1_1599BAB1_1599BAB1_1599BAB1_1598BAB1_1598BAB1_1599BAB2_0435
BMEL224914 BMEI0435BMEI0435BMEI0435BMEI0436BMEI0436BMEI0435BMEII0488
BMAL320389 BMA10247_3377BMA10247_A1357BMA10247_3377BMA10247_A1048BMA10247_A1048BMA10247_3377BMA10247_3377
BMAL320388 BMASAVP1_A2970BMASAVP1_0400BMASAVP1_A2970BMASAVP1_0249BMASAVP1_0249BMASAVP1_A2970BMASAVP1_A2970
BMAL243160 BMA_3302BMA_A0976BMA_3302BMA_A1276BMA_A1276BMA_3302BMA_3302
BLIC279010 BL03047BL03047BL03047BL03048BL03048BL03047BL02419
BJAP224911 BLR1037BLL4895BLR1037BLL2866BLL2866BLR3342BLR3342
BHAL272558 BH3643BH0029BH3643BH3642BH3642BH3643BH0568
BCLA66692 ABC1241ABC0565ABC0565ABC1242ABC1242ABC1241ABC1241
BCER288681 BCE33L4245BCE33L4245BCE33L4244BCE33L4244BCE33L4245BCE33L4245
BCEN331272 BCEN2424_3044BCEN2424_4164BCEN2424_3044BCEN2424_3043BCEN2424_3043BCEN2424_3044BCEN2424_3044
BCEN331271 BCEN_2430BCEN_4202BCEN_2430BCEN_2429BCEN_2429BCEN_2430BCEN_2430
BCAN483179 BCAN_A1620BCAN_A1620BCAN_A1620BCAN_A1619BCAN_A1619BCAN_A1620BCAN_B0817
BBRO257310 BB3711BB3711BB3711BB2519BB2519BB3711BB4594
BANT592021 BAA_4748BAA_4748BAA_4747BAA_4747BAA_4748BAA_4748
BANT568206 BAMEG_4767BAMEG_4767BAMEG_4766BAMEG_4766BAMEG_4767BAMEG_4767
BANT261594 GBAA4732GBAA4732GBAA4731GBAA4731GBAA4732GBAA4732
BANT260799 BAS4392BAS4392BAS4391BAS4391BAS4392BAS4392
BAMB398577 BAMMC406_2955BAMMC406_4053BAMMC406_2955BAMMC406_2954BAMMC406_2954BAMMC406_2955BAMMC406_2955
BAMB339670 BAMB_3089BAMB_3572BAMB_3089BAMB_3088BAMB_3088BAMB_3089BAMB_3089
BABO262698 BRUAB1_1572BRUAB1_1572BRUAB1_1572BRUAB1_1571BRUAB1_1571BRUAB1_1572BRUAB2_0429
APLE434271 APJL_0065APJL_0065APJL_0801APJL_0800APJL_0066APJL_0065
APLE416269 APL_0065APL_0065APL_0795APL_0794APL_0066APL_0065
AORE350688 CLOS_1348CLOS_1348CLOS_1349CLOS_1349CLOS_1348CLOS_1348
AMET293826 AMET_2908AMET_2908AMET_2908AMET_2006AMET_1878AMET_2908AMET_4721
ACAU438753 AZC_1512AZC_2994AZC_0775AZC_0774AZC_2993AZC_2994AZC_2994
ABAU360910 BAV1160BAV1160BAV1160BAV1646BAV1646BAV1645BAV3203
AAVE397945 AAVE_1659AAVE_1659AAVE_1659AAVE_0937AAVE_1659AAVE_1659


Organism features enriched in list (features available for 146 out of the 155 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Pairs 0.001712740112
Disease:Anthrax 0.003812644
Disease:Brucellosis 0.000935055
Disease:Dysentery 0.000228166
Endospores:No 5.580e-729211
GC_Content_Range4:0-40 5.060e-1319213
GC_Content_Range4:60-100 4.773e-1167145
GC_Content_Range7:0-30 0.0000118147
GC_Content_Range7:30-40 9.152e-818166
GC_Content_Range7:40-50 0.000177215117
GC_Content_Range7:50-60 8.432e-645107
GC_Content_Range7:60-70 6.290e-1265134
Genome_Size_Range5:0-2 1.865e-156155
Genome_Size_Range5:2-4 0.000011429197
Genome_Size_Range5:4-6 2.329e-1484184
Genome_Size_Range5:6-10 5.922e-72747
Genome_Size_Range9:1-2 1.703e-116128
Genome_Size_Range9:2-3 9.066e-711120
Genome_Size_Range9:4-5 0.00053433796
Genome_Size_Range9:5-6 2.998e-104788
Genome_Size_Range9:6-8 3.831e-82538
Gram_Stain:Gram_Neg 0.0000236104333
Habitat:Aquatic 0.00141201291
Motility:No 3.259e-618151
Motility:Yes 9.528e-689267
Oxygen_Req:Anaerobic 0.000059511102
Oxygen_Req:Facultative 0.008220261201
Shape:Coccus 1.835e-6582
Shape:Rod 2.618e-10118347



Back to top


ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 357
Effective number of orgs (counting one per cluster within 468 clusters): 279

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM40
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A0
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110180
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103310
XFAS405440 ncbi Xylella fastidiosa M120
XFAS183190 ncbi Xylella fastidiosa Temecula10
XFAS160492 ncbi Xylella fastidiosa 9a5c0
XCAM487884 Xanthomonas campestris pv. paulliniae0
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-100
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80040
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339130
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3060
WSUC273121 ncbi Wolinella succinogenes DSM 17401
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTUR377629 ncbi Teredinibacter turnerae T79011
TSP1755 Thermoanaerobacter sp.0
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332230
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TFUS269800 ncbi Thermobifida fusca YX0
TERY203124 ncbi Trichodesmium erythraeum IMS1011
TELO197221 ncbi Thermosynechococcus elongatus BP-11
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12510
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252590
TDEN243275 ncbi Treponema denticola ATCC 354050
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen0
STOK273063 ncbi Sulfolobus tokodaii 70
STHE322159 ncbi Streptococcus thermophilus LMD-90
STHE299768 ncbi Streptococcus thermophilus CNRZ10660
STHE264199 ncbi Streptococcus thermophilus LMG 183110
SSUI391296 ncbi Streptococcus suis 98HAH330
SSUI391295 ncbi Streptococcus suis 05ZYH330
SSP84588 ncbi Synechococcus sp. WH 81020
SSP64471 ncbi Synechococcus sp. CC93110
SSP387093 ncbi Sulfurovum sp. NBC37-11
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)0
SSP321327 ncbi Synechococcus sp. JA-3-3Ab0
SSP1148 ncbi Synechocystis sp. PCC 68030
SSP1131 Synechococcus sp. CC96050
SSOL273057 ncbi Sulfolobus solfataricus P20
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153051
SRUB309807 ncbi Salinibacter ruber DSM 138550
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370552 ncbi Streptococcus pyogenes MGAS102700
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103940
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SPNE488221 ncbi Streptococcus pneumoniae 705850
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-60
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-140
SPNE171101 ncbi Streptococcus pneumoniae R61
SPNE170187 ncbi Streptococcus pneumoniae G540
SPNE1313 Streptococcus pneumoniae0
SMUT210007 ncbi Streptococcus mutans UA1590
SMAR399550 ncbi Staphylothermus marinus F11
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14351
SGOR29390 Streptococcus gordonii Challis0
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB0
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122281
SEPI176279 ncbi Staphylococcus epidermidis RP62A1
SELO269084 ncbi Synechococcus elongatus PCC 63010
SDEG203122 ncbi Saccharophagus degradans 2-400
SAVE227882 ncbi Streptomyces avermitilis MA-46800
SAUR93062 ncbi Staphylococcus aureus aureus COL0
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83251
SAUR426430 ncbi Staphylococcus aureus aureus Newman1
SAUR418127 ncbi Staphylococcus aureus aureus Mu31
SAUR367830 Staphylococcus aureus aureus USA3001
SAUR359787 ncbi Staphylococcus aureus aureus JH11
SAUR359786 ncbi Staphylococcus aureus aureus JH91
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4761
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2521
SAUR273036 ncbi Staphylococcus aureus RF1221
SAUR196620 ncbi Staphylococcus aureus aureus MW21
SAUR158879 ncbi Staphylococcus aureus aureus N3151
SAUR158878 ncbi Staphylococcus aureus aureus Mu501
SALA317655 ncbi Sphingopyxis alaskensis RB22560
SAGA211110 ncbi Streptococcus agalactiae NEM3161
SAGA208435 ncbi Streptococcus agalactiae 2603V/R1
SAGA205921 ncbi Streptococcus agalactiae A9091
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RTYP257363 ncbi Rickettsia typhi Wilmington0
RSP357808 ncbi Roseiflexus sp. RS-11
RSP101510 ncbi Rhodococcus jostii RHA10
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332090
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RPAL316055 ncbi Rhodopseudomonas palustris BisA530
RMAS416276 ncbi Rickettsia massiliae MTU50
RFEL315456 ncbi Rickettsia felis URRWXCal20
RDEN375451 ncbi Roseobacter denitrificans OCh 1140
RCON272944 ncbi Rickettsia conorii Malish 70
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RALB246199 Ruminococcus albus 80
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97900
PTHE370438 ncbi Pelotomaculum thermopropionicum SI0
PSTU379731 ncbi Pseudomonas stutzeri A15010
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-10
PSP117 Pirellula sp.0
PRUM264731 ncbi Prevotella ruminicola 230
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257450
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74547 ncbi Prochlorococcus marinus MIT 93130
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR59920 ncbi Prochlorococcus marinus NATL2A1
PMAR167555 ncbi Prochlorococcus marinus NATL1A1
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95151
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13750
PMAR146891 ncbi Prochlorococcus marinus AS96010
PLUT319225 ncbi Chlorobium luteolum DSM 2731
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 170
PHOR70601 ncbi Pyrococcus horikoshii OT31
PGIN242619 ncbi Porphyromonas gingivalis W830
PFUR186497 ncbi Pyrococcus furiosus DSM 36381
PDIS435591 ncbi Parabacteroides distasonis ATCC 85030
PCAR338963 ncbi Pelobacter carbinolicus DSM 23801
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PARC259536 ncbi Psychrobacter arcticus 273-40
PAER178306 ncbi Pyrobaculum aerophilum IM20
PACN267747 ncbi Propionibacterium acnes KPA1712021
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2550
NSP387092 ncbi Nitratiruptor sp. SB155-20
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NMUL323848 ncbi Nitrosospira multiformis ATCC 251960
NMEN374833 ncbi Neisseria meningitidis 0534420
NMEN272831 ncbi Neisseria meningitidis FAM180
NMEN122587 ncbi Neisseria meningitidis Z24910
NMEN122586 ncbi Neisseria meningitidis MC580
NHAM323097 ncbi Nitrobacter hamburgensis X140
NGON242231 ncbi Neisseria gonorrhoeae FA 10900
NFAR247156 ncbi Nocardia farcinica IFM 101520
NEUT335283 ncbi Nitrosomonas eutropha C910
NEUR228410 ncbi Nitrosomonas europaea ATCC 197180
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124440
MXAN246197 ncbi Myxococcus xanthus DK 16220
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra0
MTUB336982 ncbi Mycobacterium tuberculosis F110
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE264732 ncbi Moorella thermoacetica ATCC 390730
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MTBRV ncbi Mycobacterium tuberculosis H37Rv0
MTBCDC ncbi Mycobacterium tuberculosis CDC15510
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPET420662 ncbi Methylibium petroleiphilum PM10
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR394221 ncbi Maricaulis maris MCS100
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MMAG342108 ncbi Magnetospirillum magneticum AMB-10
MLEP272631 ncbi Mycobacterium leprae TN0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-11
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MEXT419610 ncbi Methylobacterium extorquens PA10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MCAP243233 ncbi Methylococcus capsulatus Bath0
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P20
MBOV233413 ncbi Mycobacterium bovis AF2122/970
MAVI243243 ncbi Mycobacterium avium 1040
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAQU351348 ncbi Marinobacter aquaeolei VT80
MAER449447 ncbi Microcystis aeruginosa NIES-8430
MABS561007 ncbi Mycobacterium abscessus ATCC 199771
LXYL281090 ncbi Leifsonia xyli xyli CTCB070
LSAK314315 ncbi Lactobacillus sakei sakei 23K0
LREU557436 ncbi Lactobacillus reuteri DSM 200160
LPNE400673 ncbi Legionella pneumophila Corby0
LPNE297246 ncbi Legionella pneumophila Paris0
LPNE297245 ncbi Legionella pneumophila Lens0
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 10
LPLA220668 ncbi Lactobacillus plantarum WCFS10
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82930
LLAC272623 ncbi Lactococcus lactis lactis Il14030
LLAC272622 ncbi Lactococcus lactis cremoris SK110
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1300
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566010
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LCHO395495 ncbi Leptothrix cholodnii SP-60
LCAS321967 ncbi Lactobacillus casei ATCC 3340
LBRE387344 ncbi Lactobacillus brevis ATCC 3671
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1970
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5500
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)0
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)0
LACI272621 ncbi Lactobacillus acidophilus NCFM0
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HNEP81032 Hyphomonas neptunium0
HMOD498761 ncbi Heliobacterium modesticaldum Ice10
HHEP235279 ncbi Helicobacter hepaticus ATCC 514491
HHAL349124 ncbi Halorhodospira halophila SL10
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HARS204773 ncbi Herminiimonas arsenicoxydans1
GVIO251221 ncbi Gloeobacter violaceus PCC 74210
GOXY290633 ncbi Gluconobacter oxydans 621H0
GFOR411154 ncbi Gramella forsetii KT08030
GBET391165 ncbi Granulibacter bethesdensis CGDNIH11
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-000
FTUL418136 ncbi Francisella tularensis tularensis WY96-34180
FTUL401614 ncbi Francisella novicida U1120
FTUL393115 ncbi Francisella tularensis tularensis FSC1980
FTUL393011 ncbi Francisella tularensis holarctica OSU180
FTUL351581 Francisella tularensis holarctica FSC2000
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S850
FSP1855 Frankia sp. EAN1pec0
FSP106370 ncbi Frankia sp. CcI30
FRANT ncbi Francisella tularensis tularensis SCHU S40
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250170
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B10
FMAG334413 ncbi Finegoldia magna ATCC 293280
FJOH376686 ncbi Flavobacterium johnsoniae UW1010
FALN326424 ncbi Frankia alni ACN14a0
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ELIT314225 ncbi Erythrobacter litoralis HTCC25940
EFAE226185 ncbi Enterococcus faecalis V5830
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DSHI398580 ncbi Dinoroseobacter shibae DFL 121
DPSY177439 ncbi Desulfotalea psychrophila LSv540
DOLE96561 ncbi Desulfococcus oleovorans Hxd30
DNOD246195 ncbi Dichelobacter nodosus VCS1703A0
DETH243164 ncbi Dehalococcoides ethenogenes 1950
DARO159087 ncbi Dechloromonas aromatica RCB0
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA0
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTEP194439 ncbi Chlorobium tepidum TLS1
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CSP78 Caulobacter sp.0
CSAL290398 ncbi Chromohalobacter salexigens DSM 30431
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE250
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPHY357809 ncbi Clostridium phytofermentans ISDg0
CPER289380 ncbi Clostridium perfringens SM1010
CPER195103 ncbi Clostridium perfringens ATCC 131240
CPER195102 ncbi Clostridium perfringens 130
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10620
CNOV386415 ncbi Clostridium novyi NT0
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3820
CMIC31964 ncbi Clavibacter michiganensis sepedonicus0
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CJEJ407148 ncbi Campylobacter jejuni jejuni 811160
CJEJ360109 ncbi Campylobacter jejuni doylei 269.970
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1760
CJEJ195099 ncbi Campylobacter jejuni RM12210
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111680
CJEI306537 ncbi Corynebacterium jeikeium K4110
CJAP155077 Cellvibrio japonicus0
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334060
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3810
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130320
CFET360106 ncbi Campylobacter fetus fetus 82-400
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CEFF196164 ncbi Corynebacterium efficiens YS-3140
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131291
CDIF272563 ncbi Clostridium difficile 6300
CCUR360105 ncbi Campylobacter curvus 525.921
CCON360104 ncbi Campylobacter concisus 138260
CCHL340177 ncbi Chlorobium chlorochromatii CaD30
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1110
CBUR360115 ncbi Coxiella burnetii RSA 3310
CBUR227377 ncbi Coxiella burnetii RSA 4930
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B1
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN0
CBLO203907 ncbi Candidatus Blochmannia floridanus0
CAULO ncbi Caulobacter crescentus CB150
CACE272562 ncbi Clostridium acetobutylicum ATCC 8241
CABO218497 ncbi Chlamydophila abortus S26/30
BTUR314724 ncbi Borrelia turicatae 91E1350
BTHU412694 ncbi Bacillus thuringiensis Al Hakam1
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54820
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)0
BLON206672 ncbi Bifidobacterium longum NCC27051
BHER314723 ncbi Borrelia hermsii DAH0
BGAR290434 ncbi Borrelia garinii PBi0
BFRA295405 ncbi Bacteroides fragilis YCH460
BFRA272559 ncbi Bacteroides fragilis NCTC 93430
BCIC186490 Candidatus Baumannia cicadellinicola0
BCER572264 ncbi Bacillus cereus 03BB1021
BCER405917 Bacillus cereus W1
BCER315749 ncbi Bacillus cytotoxicus NVH 391-980
BCER226900 ncbi Bacillus cereus ATCC 145791
BBUR224326 ncbi Borrelia burgdorferi B310
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1000
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)0
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP76114 ncbi Aromatoleum aromaticum EbN10
ASP62977 ncbi Acinetobacter sp. ADP10
ASP62928 ncbi Azoarcus sp. BH720
ASP1667 Arthrobacter sp.0
APHA212042 ncbi Anaplasma phagocytophilum HZ0
ANAE240017 Actinomyces oris MG10
AMAR329726 ncbi Acaryochloris marina MBIC110171
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232700
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-10
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C0
ACRY349163 ncbi Acidiphilium cryptum JF-50
ACEL351607 ncbi Acidothermus cellulolyticus 11B0
ABUT367737 ncbi Arcobacter butzleri RM40180
ABOR393595 ncbi Alcanivorax borkumensis SK20
AAUR290340 ncbi Arthrobacter aurescens TC10
AAEO224324 ncbi Aquifex aeolicus VF50


Names of the homologs of the genes in the group in each of these orgs
  G6780   G6431   G2001   G2000   EG12626   EG12625   EG12076   
ZMOB264203
XORY360094
XORY342109
XORY291331
XFAS405440
XFAS183190
XFAS160492
XCAM487884
XCAM316273
XCAM314565
XCAM190485
XAXO190486
WSUC273121 WS0985
WPIP955
WPIP80849
UURE95667
UURE95664
UPAR505682
TWHI218496
TWHI203267
TVOL273116
TTUR377629 TERTU_2103
TSP1755
TPSE340099
TPEN368408
TPAL243276
TKOD69014
TFUS269800
TERY203124 TERY_1382
TELO197221 TLR1197
TDEN326298
TDEN292415
TDEN243275
TACI273075
SWOL335541
STOK273063
STHE322159
STHE299768
STHE264199
SSUI391296
SSUI391295
SSP84588
SSP64471
SSP387093 SUN_0892
SSP321332
SSP321327
SSP1148
SSP1131
SSOL273057
SSAP342451 SSP1794
SRUB309807
SPYO370554
SPYO370553
SPYO370552
SPYO370551
SPYO319701
SPYO293653
SPYO286636
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SPNE488221
SPNE487214
SPNE487213
SPNE171101 SPR1193
SPNE170187
SPNE1313
SMUT210007
SMAR399550 SMAR_0344
SHAE279808 SH1970
SGOR29390
SFUM335543
SEPI176280 SE_0680
SEPI176279 SERP0570
SELO269084
SDEG203122
SAVE227882
SAUR93062
SAUR93061 SAOUHSC_00923
SAUR426430 NWMN_0856
SAUR418127 SAHV_0981
SAUR367830 SAUSA300_0887
SAUR359787 SAURJH1_1004
SAUR359786 SAURJH9_0985
SAUR282459 SAS0856
SAUR282458 SAR0949
SAUR273036 SAB0852
SAUR196620 MW0868
SAUR158879 SA0845
SAUR158878 SAV0986
SALA317655
SAGA211110 GBS1576
SAGA208435 SAG_1517
SAGA205921 SAK_1541
SACI330779
RTYP257363
RSP357808 ROSERS_1094
RSP101510
RSAL288705
RRIC452659
RRIC392021
RPRO272947
RPAL316055
RMAS416276
RFEL315456
RDEN375451
RCON272944
RCAN293613
RBEL391896
RBEL336407
RALB246199
RAKA293614
PTOR263820
PTHE370438
PSTU379731
PSP312153
PSP117
PRUM264731
PPEN278197
PMAR93060
PMAR74547
PMAR74546
PMAR59920 PMN2A_0705
PMAR167555 NATL1_15391
PMAR167546
PMAR167542 P9515ORF_1189
PMAR167540
PMAR167539
PMAR146891
PLUT319225 PLUT_1343
PISL384616
PINT246198
PHOR70601 PH1410
PGIN242619
PFUR186497 PF1409
PDIS435591
PCAR338963 PCAR_1867
PAST100379
PARS340102
PARC259536
PAER178306
PACN267747 PPA2064
OTSU357244
NWIN323098
NSP387092
NSEN222891
NMUL323848
NMEN374833
NMEN272831
NMEN122587
NMEN122586
NHAM323097
NGON242231
NFAR247156
NEUT335283
NEUR228410
NARO279238
MXAN246197
MTUB419947
MTUB336982
MTHE349307
MTHE264732
MTHE187420
MTBRV
MTBCDC
MSYN262723
MSTA339860
MSED399549
MPUL272635
MPNE272634
MPET420662
MPEN272633
MMYC272632
MMOB267748
MMAR444158
MMAR426368
MMAR402880
MMAR394221
MMAR368407
MMAR267377
MMAG342108
MLEP272631
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259 MHUN_0202
MGEN243273
MFLO265311
MEXT419610
MCAP340047
MCAP243233
MBUR259564
MBOV410289
MBOV233413
MAVI243243
MART243272
MAQU351348
MAER449447
MABS561007 MAB_0427
LXYL281090
LSAK314315
LREU557436
LPNE400673
LPNE297246
LPNE297245
LPNE272624
LPLA220668
LMES203120
LLAC272623
LLAC272622
LJOH257314
LINT267671
LINT189518
LHEL405566
LGAS324831
LDEL390333
LDEL321956
LCHO395495
LCAS321967
LBRE387344 LVIS_1768
LBOR355277
LBOR355276
LBIF456481
LBIF355278
LACI272621
IHOS453591
HNEP81032
HMOD498761
HHEP235279 HH_0416
HHAL349124
HBUT415426
HARS204773 HEAR3292
GVIO251221
GOXY290633
GFOR411154
GBET391165 GBCGDNIH1_0124
FTUL458234
FTUL418136
FTUL401614
FTUL393115
FTUL393011
FTUL351581
FSUC59374
FSP1855
FSP106370
FRANT
FPHI484022
FNOD381764
FMAG334413
FJOH376686
FALN326424
ERUM302409
ERUM254945
ELIT314225
EFAE226185
ECHA205920
ECAN269484
DSHI398580 DSHI_0881
DPSY177439
DOLE96561
DNOD246195
DETH243164
DARO159087
CVES412965
CTRA471473
CTRA471472
CTEP194439 CT_1364
CSUL444179
CSP78
CSAL290398 CSAL_0211
CRUT413404
CPRO264201
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPHY357809
CPER289380
CPER195103
CPER195102
CPEL335992
CNOV386415
CMUR243161
CMIC443906
CMIC31964
CMET456442
CMAQ397948
CJEJ407148
CJEJ360109
CJEJ354242
CJEJ195099
CJEJ192222
CJEI306537
CJAP155077
CHUT269798
CHOM360107
CGLU196627
CFET360106
CFEL264202
CEFF196164
CDIP257309 DIP1741
CDIF272563
CCUR360105 CCV52592_1322
CCON360104
CCHL340177
CCAV227941
CBUR434922
CBUR360115
CBUR227377
CBOT508765 CLL_A2492
CBLO291272
CBLO203907
CAULO
CACE272562 CAC3644
CABO218497
BTUR314724
BTHU412694 BALH_0817
BTHE226186
BSP107806
BLON206672 BL1346
BHER314723
BGAR290434
BFRA295405
BFRA272559
BCIC186490
BCER572264 BCA_0956
BCER405917 BCE_1001
BCER315749
BCER226900 BC_0908
BBUR224326
BBAC264462
BAPH372461
BAPH198804
BAFZ390236
AYEL322098
AURANTIMONAS
ASP76114
ASP62977
ASP62928
ASP1667
APHA212042
ANAE240017
AMAR329726 AM1_4650
AMAR234826
ALAI441768
AFER243159
AEHR187272
ADEH290397
ACRY349163
ACEL351607
ABUT367737
ABOR393595
AAUR290340
AAEO224324


Organism features enriched in list (features available for 332 out of the 357 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Clusters 0.00495161517
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 0.00189961111
Disease:Wide_range_of_infections 0.00189961111
Endospores:No 7.530e-8150211
Endospores:Yes 0.00708282253
GC_Content_Range4:0-40 1.646e-15166213
GC_Content_Range4:40-60 0.0000381105224
GC_Content_Range4:60-100 6.064e-660145
GC_Content_Range7:0-30 0.00070843747
GC_Content_Range7:30-40 4.029e-11129166
GC_Content_Range7:50-60 0.000973147107
GC_Content_Range7:60-70 1.909e-653134
Genome_Size_Range5:0-2 1.020e-19134155
Genome_Size_Range5:2-4 1.779e-6138197
Genome_Size_Range5:4-6 1.877e-2251184
Genome_Size_Range5:6-10 3.342e-8947
Genome_Size_Range9:0-1 1.554e-72727
Genome_Size_Range9:1-2 5.580e-13107128
Genome_Size_Range9:2-3 9.856e-893120
Genome_Size_Range9:4-5 6.488e-83196
Genome_Size_Range9:5-6 1.289e-122088
Genome_Size_Range9:6-8 9.259e-9538
Gram_Stain:Gram_Neg 0.0000110165333
Gram_Stain:Gram_Pos 0.0008607101150
Habitat:Host-associated 1.084e-6144206
Habitat:Multiple 0.000081381178
Motility:No 4.081e-12121151
Motility:Yes 5.126e-15106267
Oxygen_Req:Facultative 0.000205595201
Shape:Coccus 9.331e-117282
Shape:Rod 4.841e-16151347
Shape:Sphere 0.00195021719
Shape:Spiral 0.00094882834



Back to top


ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 7
Effective number of orgs (counting one per cluster within 468 clusters): 6

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
HACI382638 ncbi Helicobacter acinonychis Sheeba 0.00007045077
HPY ncbi Helicobacter pylori 26695 0.00008535217
MACE188937 ncbi Methanosarcina acetivorans C2A 0.00041776537
TLET416591 ncbi Thermotoga lettingae TMO 0.00172517997
HPYL357544 ncbi Helicobacter pylori HPAG1 0.00476885216
TTHE262724 ncbi Thermus thermophilus HB27 0.00626359607
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C 0.00630959617


Names of the homologs of the genes in the group in each of these orgs
  G6780   G6431   G2001   G2000   EG12626   EG12625   EG12076   
HACI382638 HAC_0560HAC_0560HAC_0560HAC_0561HAC_0561HAC_0560HAC_0560
HPY HP0299HP0299HP0299HP0300HP0300HP0299HP0299
MACE188937 MA4250MA4250MA4250MA1246MA0880MA4250MA4250
TLET416591 TLET_0854TLET_0201TLET_0854TLET_0073TLET_0855TLET_0854TLET_0854
HPYL357544 HPAG1_0301HPAG1_0301HPAG1_0302HPAG1_0302HPAG1_0301HPAG1_0301
TTHE262724 TT_C0972TT_C0972TT_C0972TT_C0973TT_C0973TT_C0972TT_C1270
CDES477974 DAUD_0386DAUD_0386DAUD_0386DAUD_0387DAUD_0387DAUD_0386DAUD_0386


Organism features enriched in list (features available for 7 out of the 7 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Shape:Spiral 0.0051141334



Back to top


ORGANISMS DEPLETED FOR GROUP:




Back to top


PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
GALACTCAT-PWY (D-galactonate degradation)104790.5289
GLUCARDEG-PWY (D-glucarate degradation I)152920.4684
PWY0-823 (arginine degradation III (arginine decarboxylase/agmatinase pathway))2451220.4640
PWY-6196 (serine racemization)102710.4578
GALACTARDEG-PWY (D-galactarate degradation I)151880.4370
GLUCARGALACTSUPER-PWY (superpathway of D-glucarate and D-galactarate degradation)135800.4183
PWY-6185 (4-methylcatechol degradation (ortho cleavage))107690.4172
GALACTITOLCAT-PWY (galactitol degradation)73540.4137



Back to top


PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G6431   G2001   G2000   EG12626   EG12625   EG12076   
G67800.9995690.9997320.9995940.9997090.9998240.999487
G64310.999430.9993340.9994170.9996070.999503
G20010.9998230.9996970.9997420.999482
G20000.9997970.9996710.999349
EG126260.9998390.99947
EG126250.999544
EG12076



Back to top


PAIRWISE BLAST SCORES:

  G6780   G6431   G2001   G2000   EG12626   EG12625   EG12076   
G67800.0f07.4e-48---3.8e-51-
G64311.4e-540.0f0---2.2e-58-
G20013.6e-371.8e-350.0f0--1.7e-48-
G2000---0.0f04.0e-47--
EG12626----0.0f0--
EG126251.5e-709.3e-70---0.0f0-
EG12076-2.7e-57---1.4e-520.0f0



Back to top


PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- ABC-8-CPLX (dipeptide ABC transporter) (degree of match pw to cand: 0.400, degree of match cand to pw: 0.286, average score: 1.000)
  Genes in pathway or complex:
             0.9996 0.9992 EG10248 (dppA) DPPA-MONOMER (DppA)
   *in cand* 0.9997 0.9994 EG12626 (dppC) DPPC-MONOMER (DppC)
   *in cand* 0.9997 0.9995 EG12625 (dppB) DPPB-MONOMER (DppB)
             0.9992 0.9987 EG12628 (dppF) DPPF-MONOMER (DppF)
             0.9992 0.9987 EG12627 (dppD) DPPD-MONOMER (DppD)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9995 0.9993 EG12076 (nikB) NIKB-MONOMER (NikB)
   *in cand* 0.9997 0.9993 G2000 (sapC) SAPC-MONOMER (SapC)
   *in cand* 0.9997 0.9994 G2001 (sapB) SAPB-MONOMER (SapB)
   *in cand* 0.9996 0.9993 G6431 (gsiC) YLIC-MONOMER (GsiC)
   *in cand* 0.9997 0.9995 G6780 (ddpB) YDDR-MONOMER (YddR)

- ABC-29-CPLX (peptide uptake ABC transporter) (degree of match pw to cand: 0.400, degree of match cand to pw: 0.286, average score: 1.000)
  Genes in pathway or complex:
             0.9996 0.9991 G2002 (sapA) SAPA-MONOMER (SapA)
   *in cand* 0.9997 0.9993 G2000 (sapC) SAPC-MONOMER (SapC)
   *in cand* 0.9997 0.9994 G2001 (sapB) SAPB-MONOMER (SapB)
             0.9991 0.9982 EG12304 (sapD) SAPD-MONOMER (SapD)
             0.9990 0.9979 EG12305 (sapF) SAPF-MONOMER (SapF)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9995 0.9993 EG12076 (nikB) NIKB-MONOMER (NikB)
   *in cand* 0.9997 0.9995 EG12625 (dppB) DPPB-MONOMER (DppB)
   *in cand* 0.9997 0.9994 EG12626 (dppC) DPPC-MONOMER (DppC)
   *in cand* 0.9996 0.9993 G6431 (gsiC) YLIC-MONOMER (GsiC)
   *in cand* 0.9997 0.9995 G6780 (ddpB) YDDR-MONOMER (YddR)



Back to top


GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG12625 EG12626 (centered at EG12625)
G6780 (centered at G6780)
G6431 (centered at G6431)
EG12076 (centered at EG12076)
G2000 G2001 (centered at G2001)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G6780   G6431   G2001   G2000   EG12626   EG12625   EG12076   
219/623214/623221/623214/623221/623206/623199/623
AAVE397945:0:Tyes711711711-0711711
ABAC204669:0:Tyes000--00
ABAU360910:0:Tyes0004864864852052
ACAU438753:0:Tyes746224710224622472247
AFUL224325:0:Tyes0----0-
AHYD196024:0:Tyes--100--
AMAR329726:9:Tyes0------
AMET293826:0:Tyes101810181018126010182837
AORE350688:0:Tyes00-1100
APER272557:0:Tyes020560--2056-
APLE416269:0:Tyes0073072910-
APLE434271:0:Tno0070370210-
ASAL382245:5:Tyes--138513860--
ASP232721:2:Tyes----0-202
AVAR240292:3:Tyes1517--0---
BABO262698:0:Tno------0
BABO262698:1:Tno111001-
BAMB339670:2:Tno-0-----
BAMB339670:3:Tno1-10011
BAMB398577:2:Tno-0-----
BAMB398577:3:Tno1-10011
BAMY326423:0:Tyes-0--10-
BANT260799:0:Tno11-0011
BANT261594:2:Tno11-0011
BANT568206:2:Tyes11-0011
BANT592021:2:Tno11-0011
BBAC360095:0:Tyes1--00--
BBRO257310:0:Tyes1200120012000012002097
BCAN483179:0:Tno------0
BCAN483179:1:Tno111001-
BCEN331271:1:Tno-0-----
BCEN331271:2:Tno1-10011
BCEN331272:2:Tyes-0-----
BCEN331272:3:Tyes1-10011
BCER226900:1:Tyes------0
BCER288681:0:Tno11-0011
BCER405917:1:Tyes------0
BCER572264:1:Tno------0
BCLA66692:0:Tyes68900690690689689
BHAL272558:0:Tyes370803708370737073708590
BHEN283166:0:Tyes1--00--
BJAP224911:0:Fyes0388001844184423202320
BLIC279010:0:Tyes0001101857
BLON206672:0:Tyes--0----
BMAL243160:0:Tno-0-289289--
BMAL243160:1:Tno0-0--00
BMAL320388:0:Tno-149-00--
BMAL320388:1:Tno0-0--00
BMAL320389:0:Tyes-306-00--
BMAL320389:1:Tyes0-0--00
BMEL224914:0:Tno------0
BMEL224914:1:Tno000110-
BMEL359391:0:Tno------0
BMEL359391:1:Tno111001-
BOVI236:0:Tyes-0---516343
BOVI236:1:Tyes---00--
BPAR257311:0:Tno1709170917090017092556
BPER257313:0:Tyes11119501828
BPET94624:0:Tyes1455145514552516251625170
BPSE272560:0:Tyes-0-----
BPSE272560:1:Tyes0-01100
BPSE320372:0:Tno-0-----
BPSE320372:1:Tno0-01100
BPSE320373:0:Tno-0-----
BPSE320373:1:Tno0-01100
BPUM315750:0:Tyes0001102267
BQUI283165:0:Tyes1--001-
BSP36773:1:Tyes-0-----
BSP36773:2:Tyes1-10011
BSP376:0:Tyes4827111310011113
BSUB:0:Tyes-0--10-
BSUI204722:0:Tyes------0
BSUI204722:1:Tyes111001-
BSUI470137:0:Tno------0
BSUI470137:1:Tno111001-
BTHA271848:0:Tno-0-----
BTHA271848:1:Tno0-01100
BTHU281309:1:Tno11-0011
BTHU412694:1:Tno------0
BTRI382640:1:Tyes1--00--
BVIE269482:6:Tyes-0-----
BVIE269482:7:Tyes1-10011
BWEI315730:4:Tyes0-----0
BXEN266265:0:Tyes1--001-
CACE272562:1:Tyes-0-----
CBEI290402:0:Tyes-948---0-
CBOT36826:1:Tno0-0---0
CBOT441770:0:Tyes0-0---0
CBOT441771:0:Tno0-0---0
CBOT441772:1:Tno0-0---0
CBOT498213:1:Tno0-0---0
CBOT508765:1:Tyes-0-----
CBOT515621:2:Tyes0-0---0
CBOT536232:0:Tno0-0---0
CCUR360105:0:Tyes------0
CDES477974:0:Tyes0001100
CDIP257309:0:Tyes------0
CHYD246194:0:Tyes0-01100
CKLU431943:1:Tyes2612612610262261-
CKOR374847:0:Tyes000-10-
CPSY167879:0:Tyes-00110-
CSAL290398:0:Tyes-0-----
CSP501479:2:Fyes------0
CSP501479:4:Fyes-1-0-1-
CSP501479:8:Fyes0-0-1--
CTEP194439:0:Tyes----0--
CTET212717:0:Tyes---0--23
CVIO243365:0:Tyes0001100
DDES207559:0:Tyes1-10011
DGEO319795:1:Tyes0001-00
DHAF138119:0:Tyes0001389500
DRAD243230:3:Tyes1110011
DRED349161:0:Tyes0206620662065206520662066
DSHI398580:5:Tyes------0
DSP216389:0:Tyes-0----0
DSP255470:0:Tno-0----0
DVUL882:1:Tyes---00--
ECAR218491:0:Tyes21398581024652466-
ECOL199310:0:Tno33740828827337333743286
ECOL316407:0:Tno6690472471290629052972
ECOL331111:6:Tno7440575574301530162942
ECOL362663:0:Tno27970505504279627972725
ECOL364106:1:Tno32360736735323532363149
ECOL405955:2:Tyes28680553552286728682794
ECOL409438:6:Tyes6920461460297329742903
ECOL413997:0:Tno6410470469260526062540
ECOL439855:4:Tno8090951952291829192818
ECOL469008:0:Tno19622590212421251071
ECOL481805:0:Tno20042645216121621064
ECOL585034:0:Tno6190447446278827892717
ECOL585035:0:Tno29990569568299829992920
ECOL585055:0:Tno7440585584307630772979
ECOL585056:2:Tno7220581580302930302942
ECOL585057:0:Tno9530848847324432453155
ECOL585397:0:Tno33270694693332633273259
ECOL83334:0:Tno11970975974358935903511
ECOLI:0:Tno6790477476277027712703
ECOO157:0:Tno1091013211322361436153532
EFER585054:1:Tyes25560679680255525560
ESP42895:1:Tyes930116320102011101677
FNUC190304:0:Tyes00011-0
GBET391165:0:Tyes-0-----
GKAU235909:1:Tyes-367-00--
GMET269799:1:Tyes---11-0
GSUL243231:0:Tyes---11-0
GTHE420246:1:Tyes0001100
GURA351605:0:Tyes---22-0
HACI382638:1:Tyes0001100
HARS204773:0:Tyes----0--
HAUR316274:2:Tyes1253-1253-125412530
HCHE349521:0:Tyes11-017481-
HDUC233412:0:Tyes0080480510-
HHEP235279:0:Tyes------0
HINF281310:0:Tyes11393801-
HINF374930:0:Tyes--03737--
HINF71421:0:Tno1144644701-
HMAR272569:8:Tyes0----0-
HMUK485914:1:Tyes01382-1381-0-
HPY:0:Tno0001100
HPYL357544:1:Tyes0-01100
HPYL85963:0:Tno000--00
HSAL478009:4:Tyes0----0-
HSOM205914:1:Tyes--10---
HSOM228400:0:Tno--10---
HSP64091:2:Tno0----0-
HWAL362976:1:Tyes9520---952-
ILOI283942:0:Tyes--01---
JSP290400:1:Tyes0211802117211721182118
JSP375286:0:Tyes--2140---0
KPNE272620:2:Tyes28974880130289628972841
KRAD266940:2:Fyes16950169580780716951695
LBRE387344:2:Tyes-0-----
LINN272626:1:Tno-00---0
LINT363253:3:Tyes---00--
LMON169963:0:Tno-00---0
LMON265669:0:Tyes-00---0
LSPH444177:1:Tyes0001102605
LWEL386043:0:Tyes-00---0
MABS561007:1:Tyes-0-----
MACE188937:0:Tyes327432743274347032743274
MAEO419665:0:Tyes--0---0
MBAR269797:1:Tyes0734--2328-2329
MFLA265072:0:Tyes362362--0362362
MGIL350054:3:Tyes-110011
MHUN323259:0:Tyes------0
MLAB410358:0:Tyes-0---00
MLOT266835:2:Tyes1050001100
MMAZ192952:0:Tyes-0--7587590
MSME246196:0:Tyes-32465728--05728
MSP164756:1:Tno0001100
MSP164757:0:Tno0001100
MSP189918:2:Tyes0001100
MSP266779:3:Tyes1145410011
MSP400668:0:Tyes1110014407
MSP409:2:Tyes048701101215
MSUC221988:0:Tyes9309304104099299300
MVAN350058:0:Tyes0001100
NOCE323261:1:Tyes000--00
NPHA348780:2:Tyes----1-0
NSP103690:6:Tyes0--1886---
NSP35761:1:Tyes-0----0
OANT439375:5:Tyes9760976977977976976
OCAR504832:0:Tyes30803090-0030903080
OIHE221109:0:Tyes16201001-
PABY272844:0:Tyes00-11-0
PACN267747:0:Tyes0------
PAER208963:0:Tyes0-0110-
PAER208964:0:Tno000110-
PATL342610:0:Tyes--011--
PCAR338963:0:Tyes----0--
PCRY335284:1:Tyes1-1001-
PENT384676:0:Tyes1110011
PFLU205922:0:Tyes1110011
PFLU216595:1:Tyes111001-
PFLU220664:0:Tyes3109310910013109
PFUR186497:0:Tyes0------
PHAL326442:1:Tyes--0110-
PHOR70601:0:Tyes0------
PING357804:0:Tyes1737-152015210--
PLUM243265:0:Fyes0-2338233910-
PLUT319225:0:Tyes----0--
PMAR167542:0:Tyes--0----
PMAR167555:0:Tyes0------
PMAR59920:0:Tno0------
PMEN399739:0:Tyes111001-
PMOB403833:0:Tyes0-0--0-
PMUL272843:1:Tyes0067567610-
PNAP365044:8:Tyes0-0110-
PPRO298386:2:Tyes--011--
PPUT160488:0:Tno1356510012464
PPUT351746:0:Tyes1110011
PPUT76869:0:Tno1110011
PSP296591:2:Tyes2660026602661266126602660
PSP56811:2:Tyes0-0110-
PSYR205918:0:Tyes198241119821983198319820
PSYR223283:2:Tyes1956019561957195719560
RCAS383372:0:Tyes-610011
RETL347834:3:Tyes-0-----
RETL347834:5:Tyes3351-1281291291280
REUT264198:3:Tyes11110301102--
REUT381666:1:Tyes-----0-
REUT381666:2:Tyes11117400-829
RFER338969:1:Tyes96921209699689689690
RLEG216596:6:Tyes0001100
RMET266264:1:Tyes---1-0-
RMET266264:2:Tyes001737-1736-0
RPAL258594:0:Tyes2550255232-00
RPAL316056:0:Tyes-0---00
RPAL316057:0:Tyes00---00
RPAL316058:0:Tyes3849100938490-10091009
RPOM246200:1:Tyes1411108414111412141214110
RRUB269796:1:Tyes8181818282810
RSOL267608:1:Tyes000-151200
RSP357808:0:Tyes-0-----
RSPH272943:3:Tyes0001100
RSPH349101:1:Tno0001100
RSPH349102:4:Tyes0001100
RXYL266117:0:Tyes11598001598
SACI56780:0:Tyes---11-0
SAGA205921:0:Tno------0
SAGA208435:0:Tno------0
SAGA211110:0:Tyes------0
SARE391037:0:Tyes1381138101382138201381
SAUR158878:1:Tno-0-----
SAUR158879:1:Tno-0-----
SAUR196620:0:Tno-0-----
SAUR273036:0:Tno-0-----
SAUR282458:0:Tno-0-----
SAUR282459:0:Tno-0-----
SAUR359786:1:Tno-0-----
SAUR359787:1:Tno-0-----
SAUR367830:3:Tno-0-----
SAUR418127:0:Tyes-0-----
SAUR426430:0:Tno-0-----
SAUR93061:0:Fno-0-----
SBAL399599:3:Tyes--100--
SBAL402882:1:Tno--100--
SBOY300268:1:Tyes7980986987267326742607
SCO:2:Fyes-00-1-0
SDEN318161:0:Tyes--01---
SDYS300267:1:Tyes35540836595355335542703
SENT209261:0:Tno21924250621932192425
SENT220341:0:Tno29780427419297929780
SENT295319:0:Tno22156866022142215686
SENT321314:2:Tno27530848849275227532753
SENT454169:2:Tno28650877878286428650
SEPI176279:1:Tyes-0-----
SEPI176280:0:Tno-0-----
SERY405948:0:Tyes010020--04244
SFLE198214:0:Tyes26740498497267326742599
SFLE373384:0:Tno2588047046986925882527
SGLO343509:3:Tyes001489149210-
SHAE279808:0:Tyes-0-----
SHAL458817:0:Tyes--011--
SHIGELLA:0:Tno29590505504296029593028
SLAC55218:1:Fyes1321410011
SLOI323850:0:Tyes--0110-
SMAR399550:0:Tyes----0--
SMED366394:3:Tyes0249601102496
SMEL266834:2:Tyes1708227101100
SONE211586:1:Tyes--100--
SPEA398579:0:Tno--0110-
SPNE171101:0:Tno------0
SPRO399741:1:Tyes2261145825432544102261
SSAP342451:2:Tyes-0-----
SSED425104:0:Tyes--1001-
SSON300269:1:Tyes7830974975288328822753
SSP292414:1:Tyes---0---
SSP292414:2:Tyes272126911-01-
SSP387093:0:Tyes--0----
SSP644076:2:Fyes---0---
SSP644076:3:Fyes-088---0
SSP644076:6:Fyes0---468469-
SSP94122:1:Tyes--011--
STHE292459:0:Tyes122915780122812281229325
STRO369723:0:Tyes0145201453145301452
STYP99287:1:Tyes27590831832275827590
TCRU317025:0:Tyes000--00
TELO197221:0:Tyes0------
TERY203124:0:Tyes0------
TLET416591:0:Tyes7951287950796795795
TMAR243274:0:Tyes000--0-
TPET390874:0:Tno000--0-
TROS309801:0:Tyes---0---
TROS309801:1:Tyes5752420-15750
TSP28240:0:Tyes000--0-
TTEN273068:0:Tyes0-0--00
TTHE262724:1:Tyes000110303
TTHE300852:2:Tyes0003001-0
TTUR377629:0:Tyes-0-----
UMET351160:0:Tyes1-1-011
VCHO:0:Tyes--154215430--
VCHO345073:1:Tno--011216--
VEIS391735:1:Tyes334538153345267054833450
VFIS312309:1:Tyes--100--
VPAR223926:1:Tyes--115811570--
VVUL196600:2:Tyes--138813870--
VVUL216895:1:Tno--169816990--
WSUC273121:0:Tyes------0
XAUT78245:1:Tyes12901290---12900
YENT393305:1:Tyes0-1567156834893490-
YPES187410:5:Tno0-1244124331123110-
YPES214092:3:Tno1041-0116001601-
YPES349746:2:Tno1464-011481--
YPES360102:3:Tyes1262-0121532154-
YPES377628:2:Tno1869-0118681869-
YPES386656:2:Tno2585-1025842585-
YPSE273123:2:Tno1567-0115661567-
YPSE349747:2:Tno2264-1022632264-



Back to top