CANDIDATE ID: 97

CANDIDATE ID: 97

NUMBER OF GENES: 7
AVERAGE SCORE:    9.9972295e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    7.1428571e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7665 (lptA) (b3200)
   Products of gene:
     - YHBN-MONOMER (LptA)
     - ABC-53-CPLX (LptABCFG ABC transporter)

- EG12146 (yhbJ) (b3205)
   Products of gene:
     - EG12146-MONOMER (predicted P-loop containing ATPase)

- EG11682 (ptsN) (b3204)
   Products of gene:
     - EG11682-MONOMER (phosphotransferase system enzyme IIA, regulates N metabolism)

- EG11681 (hpf) (b3203)
   Products of gene:
     - EG11681-MONOMER (predicted ribosome-associated, sigma 54 modulation protein)

- EG11680 (lptB) (b3201)
   Products of gene:
     - YHBG-MONOMER (LptB)
     - ABC-53-CPLX (LptABCFG ABC transporter)

- EG11151 (raiA) (b2597)
   Products of gene:
     - EG11151-MONOMER (stationary phase translation inhibitor and ribosome stability factor)

- EG10898 (rpoN) (b3202)
   Products of gene:
     - RPON-MONOMER (RNA polymerase, sigma 54 (sigma N) factor)
     - RNAP54-CPLX (RNA polymerase sigma 54)



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ORGANISMS CONTAINING AT LEAST 6 GENES FROM THE GROUP:

Total number of orgs: 170
Effective number of orgs (counting one per cluster within 468 clusters): 116

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317587
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329537
YPES386656 ncbi Yersinia pestis Pestoides F7
YPES377628 ncbi Yersinia pestis Nepal5167
YPES360102 ncbi Yersinia pestis Antiqua7
YPES349746 ncbi Yersinia pestis Angola7
YPES214092 ncbi Yersinia pestis CO927
YPES187410 ncbi Yersinia pestis KIM 107
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80817
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A7
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110187
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103317
XFAS405440 ncbi Xylella fastidiosa M126
XFAS183190 ncbi Xylella fastidiosa Temecula16
XFAS160492 ncbi Xylella fastidiosa 9a5c6
XCAM487884 Xanthomonas campestris pv. paulliniae7
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-107
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80047
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339137
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3067
VVUL216895 ncbi Vibrio vulnificus CMCP67
VVUL196600 ncbi Vibrio vulnificus YJ0167
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106337
VFIS312309 ncbi Vibrio fischeri ES1147
VEIS391735 ncbi Verminephrobacter eiseniae EF01-27
VCHO345073 ncbi Vibrio cholerae O3957
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169617
TTUR377629 ncbi Teredinibacter turnerae T79016
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252597
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT27
SSP94122 ncbi Shewanella sp. ANA-37
SSON300269 ncbi Shigella sonnei Ss0467
SSED425104 ncbi Shewanella sediminis HAW-EB37
SPRO399741 ncbi Serratia proteamaculans 5687
SPEA398579 ncbi Shewanella pealeana ATCC 7003456
SONE211586 ncbi Shewanella oneidensis MR-17
SLOI323850 ncbi Shewanella loihica PV-47
SHIGELLA ncbi Shigella flexneri 2a str. 2457T7
SHAL458817 ncbi Shewanella halifaxensis HAW-EB47
SGLO343509 ncbi Sodalis glossinidius morsitans7
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB6
SFLE373384 ncbi Shigella flexneri 5 str. 84017
SFLE198214 ncbi Shigella flexneri 2a str. 3017
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4767
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B677
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91507
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT187
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty27
SDYS300267 ncbi Shigella dysenteriae Sd1977
SDEN318161 ncbi Shewanella denitrificans OS2177
SDEG203122 ncbi Saccharophagus degradans 2-406
SBOY300268 ncbi Shigella boydii Sb2277
SBAL402882 ncbi Shewanella baltica OS1857
SBAL399599 ncbi Shewanella baltica OS1957
SACI56780 ncbi Syntrophus aciditrophicus SB7
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170256
RSOL267608 ncbi Ralstonia solanacearum GMI10006
RPOM246200 ncbi Ruegeria pomeroyi DSS-36
RMET266264 ncbi Ralstonia metallidurans CH347
RFER338969 ncbi Rhodoferax ferrireducens T1186
REUT381666 ncbi Ralstonia eutropha H167
REUT264198 ncbi Ralstonia eutropha JMP1347
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30007
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a7
PSTU379731 ncbi Pseudomonas stutzeri A15017
PSP296591 ncbi Polaromonas sp. JS6667
PPUT76869 ncbi Pseudomonas putida GB-17
PPUT351746 ncbi Pseudomonas putida F17
PPUT160488 ncbi Pseudomonas putida KT24407
PPRO298386 ncbi Photobacterium profundum SS97
PNAP365044 ncbi Polaromonas naphthalenivorans CJ27
PMUL272843 ncbi Pasteurella multocida multocida Pm706
PMEN399739 ncbi Pseudomonas mendocina ymp7
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO17
PING357804 ncbi Psychromonas ingrahamii 377
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1257
PFLU220664 ncbi Pseudomonas fluorescens Pf-57
PFLU216595 ncbi Pseudomonas fluorescens SBW257
PFLU205922 ncbi Pseudomonas fluorescens Pf0-17
PENT384676 ncbi Pseudomonas entomophila L487
PCRY335284 ncbi Psychrobacter cryohalolentis K56
PCAR338963 ncbi Pelobacter carbinolicus DSM 23807
PATL342610 ncbi Pseudoalteromonas atlantica T6c7
PARC259536 ncbi Psychrobacter arcticus 273-46
PAER208964 ncbi Pseudomonas aeruginosa PAO17
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA147
NOCE323261 ncbi Nitrosococcus oceani ATCC 197077
NMUL323848 ncbi Nitrosospira multiformis ATCC 251966
NEUT335283 ncbi Nitrosomonas eutropha C917
NEUR228410 ncbi Nitrosomonas europaea ATCC 197187
MXAN246197 ncbi Myxococcus xanthus DK 16226
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E6
MSP400668 ncbi Marinomonas sp. MWYL16
MPET420662 ncbi Methylibium petroleiphilum PM17
MFLA265072 ncbi Methylobacillus flagellatus KT6
MCAP243233 ncbi Methylococcus capsulatus Bath6
MAQU351348 ncbi Marinobacter aquaeolei VT87
LCHO395495 ncbi Leptothrix cholodnii SP-67
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785787
JSP375286 ncbi Janthinobacterium sp. Marseille7
ILOI283942 ncbi Idiomarina loihiensis L2TR7
HSOM228400 ncbi Haemophilus somnus 23366
HSOM205914 ncbi Haemophilus somnus 129PT6
HINF374930 ncbi Haemophilus influenzae PittEE6
HHAL349124 ncbi Halorhodospira halophila SL17
HCHE349521 ncbi Hahella chejuensis KCTC 23967
HARS204773 ncbi Herminiimonas arsenicoxydans6
GURA351605 ncbi Geobacter uraniireducens Rf47
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-26
GSUL243231 ncbi Geobacter sulfurreducens PCA7
GMET269799 ncbi Geobacter metallireducens GS-157
GKAU235909 ncbi Geobacillus kaustophilus HTA4266
ESP42895 Enterobacter sp.7
EFER585054 ncbi Escherichia fergusonii ATCC 354697
ECOO157 ncbi Escherichia coli O157:H7 EDL9337
ECOL83334 Escherichia coli O157:H77
ECOL585397 ncbi Escherichia coli ED1a7
ECOL585057 ncbi Escherichia coli IAI397
ECOL585056 ncbi Escherichia coli UMN0267
ECOL585055 ncbi Escherichia coli 559897
ECOL585035 ncbi Escherichia coli S887
ECOL585034 ncbi Escherichia coli IAI17
ECOL481805 ncbi Escherichia coli ATCC 87397
ECOL469008 ncbi Escherichia coli BL21(DE3)7
ECOL439855 ncbi Escherichia coli SMS-3-57
ECOL413997 ncbi Escherichia coli B str. REL6067
ECOL409438 ncbi Escherichia coli SE117
ECOL405955 ncbi Escherichia coli APEC O17
ECOL364106 ncbi Escherichia coli UTI897
ECOL362663 ncbi Escherichia coli 5367
ECOL331111 ncbi Escherichia coli E24377A7
ECOL316407 ncbi Escherichia coli K-12 substr. W31107
ECOL199310 ncbi Escherichia coli CFT0737
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10437
DSHI398580 ncbi Dinoroseobacter shibae DFL 127
DOLE96561 ncbi Desulfococcus oleovorans Hxd36
DNOD246195 ncbi Dichelobacter nodosus VCS1703A6
DARO159087 ncbi Dechloromonas aromatica RCB7
CVIO243365 ncbi Chromobacterium violaceum ATCC 124727
CSAL290398 ncbi Chromohalobacter salexigens DSM 30437
CPSY167879 ncbi Colwellia psychrerythraea 34H7
CJAP155077 Cellvibrio japonicus7
BVIE269482 ncbi Burkholderia vietnamiensis G46
BTHA271848 ncbi Burkholderia thailandensis E2647
BSUB ncbi Bacillus subtilis subtilis 1686
BSP36773 Burkholderia sp.6
BPSE320372 ncbi Burkholderia pseudomallei 1710b7
BPSE272560 ncbi Burkholderia pseudomallei K962437
BPET94624 Bordetella petrii6
BPAR257311 ncbi Bordetella parapertussis 128226
BMAL320389 ncbi Burkholderia mallei NCTC 102477
BMAL320388 ncbi Burkholderia mallei SAVP17
BMAL243160 ncbi Burkholderia mallei ATCC 233447
BCEN331272 ncbi Burkholderia cenocepacia HI24246
BCEN331271 ncbi Burkholderia cenocepacia AU 10546
BBRO257310 ncbi Bordetella bronchiseptica RB506
BAMB398577 ncbi Burkholderia ambifaria MC40-66
BAMB339670 ncbi Burkholderia ambifaria AMMD6
ASP76114 ncbi Aromatoleum aromaticum EbN17
ASP62977 ncbi Acinetobacter sp. ADP16
ASP62928 ncbi Azoarcus sp. BH727
ASP232721 ncbi Acidovorax sp. JS426
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4497
AHYD196024 Aeromonas hydrophila dhakensis7
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232707
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-17
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C6
ABOR393595 ncbi Alcanivorax borkumensis SK27
ABAU360910 ncbi Bordetella avium 197N6
AAVE397945 ncbi Acidovorax citrulli AAC00-17


Names of the homologs of the genes in the group in each of these orgs
  G7665   EG12146   EG11682   EG11681   EG11680   EG11151   EG10898   
YPSE349747 YPSIP31758_0443YPSIP31758_0438YPSIP31758_0439YPSIP31758_0440YPSIP31758_0442YPSIP31758_3216YPSIP31758_0441
YPSE273123 YPTB3524YPTB3529YPTB3528YPTB3527YPTB3525YPTB0844YPTB3526
YPES386656 YPDSF_0317YPDSF_0311YPDSF_0312YPDSF_0313YPDSF_0316YPDSF_2915YPDSF_0315
YPES377628 YPN_3462YPN_3468YPN_3467YPN_3466YPN_3463YPN_0817YPN_3464
YPES360102 YPA_3723YPA_3717YPA_3718YPA_3719YPA_3722YPA_2770YPA_3721
YPES349746 YPANGOLA_A1151YPANGOLA_A1156YPANGOLA_A1155YPANGOLA_A1154YPANGOLA_A1152YPANGOLA_A3479YPANGOLA_A1153
YPES214092 YPO3580YPO3586YPO3585YPO3279YPO3581YPO3279YPO3582
YPES187410 Y0152Y0158Y0157Y0156Y0153Y0910Y0154
YENT393305 YE3757YE3762YE3761YE3760YE3758YE0889YE3759
XORY360094 XOOORF_4032XOOORF_4038XOOORF_4036XOOORF_4035XOOORF_4033XOOORF_4035XOOORF_4034
XORY342109 XOO1185XOO1179XOO1181XOO1182XOO1184XOO1182XOO1183
XORY291331 XOO1286XOO1280XOO1282XOO1283XOO1285XOO1283XOO1284
XFAS405440 XFASM12_0758XFASM12_0753XFASM12_0755XFASM12_0757XFASM12_0755XFASM12_0756
XFAS183190 PD_0639PD_0634PD_0636PD_0638PD_0636PD_0637
XFAS160492 XF1410XF1405XF1407XF1409XF1407XF1408
XCAM487884 XCC-B100_1360XCC-B100_1354XCC-B100_1356XCC-B100_1357XCC-B100_1359XCC-B100_1357XCC-B100_1358
XCAM316273 XCAORF_3171XCAORF_3177XCAORF_3175XCAORF_3174XCAORF_3172XCAORF_3174XCAORF_3173
XCAM314565 XC_1313XC_1307XC_1309XC_1310XC_1312XC_1310XC_1311
XCAM190485 XCC2800XCC2806XCC2804XCC2803XCC2801XCC2803XCC2802
XAXO190486 XAC2970XAC2976XAC2974XAC2973XAC2971XAC2973XAC2972
VVUL216895 VV1_0690VV1_0695VV1_0694VV1_0693VV1_0691VV1_0486VV1_0692
VVUL196600 VV0450VV0445VV0446VV0447VV0449VV0710VV0448
VPAR223926 VP2668VP2673VP2672VP2671VP2669VP0556VP2670
VFIS312309 VF0389VF0384VF0385VF0386VF0388VF0562VF0387
VEIS391735 VEIS_0576VEIS_1053VEIS_0601VEIS_0600VEIS_0577VEIS_0600VEIS_0578
VCHO345073 VC0395_A2107VC0395_A2112VC0395_A2111VC0395_A2110VC0395_A2108VC0395_A0236VC0395_A2109
VCHO VC2527VC2532VC2531VC2530VC2528VC0706VC2529
TTUR377629 TERTU_3819TERTU_3824TERTU_3823TERTU_3543TERTU_3820TERTU_3821
TDEN292415 TBD_0535TBD_0529TBD_0531TBD_0532TBD_0534TBD_0532TBD_0533
STYP99287 STM3318STM3323STM3322STM3321STM3319STM2665STM3320
SSP94122 SHEWANA3_0674SHEWANA3_0669SHEWANA3_0670SHEWANA3_0671SHEWANA3_0673SHEWANA3_1133SHEWANA3_0672
SSON300269 SSO_3348SSO_3353SSO_3352SSO_3351SSO_3349SSO_2748SSO_3350
SSED425104 SSED_0728SSED_0723SSED_0724SSED_0725SSED_0727SSED_1169SSED_0726
SPRO399741 SPRO_4365SPRO_4370SPRO_4369SPRO_4368SPRO_4366SPRO_0882SPRO_4367
SPEA398579 SPEA_3614SPEA_3618SPEA_3617SPEA_3615SPEA_1060SPEA_3616
SONE211586 SO_3959SO_3964SO_3963SO_3962SO_3960SO_3422SO_3961
SLOI323850 SHEW_3309SHEW_3314SHEW_3313SHEW_3312SHEW_3310SHEW_1073SHEW_3311
SHIGELLA YHBNYHBJPTSNYHBHYHBGYFIARPON
SHAL458817 SHAL_3703SHAL_3708SHAL_3707SHAL_3706SHAL_3704SHAL_1108SHAL_3705
SGLO343509 SG0201SG0196SG0197SG0198SG0200SG0581SG0199
SFUM335543 SFUM_2066SFUM_2067SFUM_2068SFUM_2070SFUM_2068SFUM_2069
SFLE373384 SFV_3230SFV_3235SFV_3234SFV_3233SFV_3231SFV_2873SFV_3232
SFLE198214 AAN44706.1AAN44711.1AAN44710.1AAN44709.1AAN44707.1AAN44153.1AAN44708.1
SENT454169 SEHA_C3615SEHA_C3620SEHA_C3619SEHA_C3618SEHA_C3616SEHA_C2881SEHA_C3617
SENT321314 SCH_3256SCH_3261SCH_3260SCH_3259SCH_3257SCH_2668SCH_3258
SENT295319 SPA3185SPA3190SPA3189SPA3188SPA3186SPA2525SPA3187
SENT220341 STY3497STY3502STY3501STY3500STY3498STY2853STY3499
SENT209261 T3235T3240T3239T3238T3236T2620T3237
SDYS300267 SDY_3381SDY_3386SDY_3385SDY_3384SDY_3382SDY_2768SDY_3383
SDEN318161 SDEN_0491SDEN_0486SDEN_0487SDEN_0488SDEN_0490SDEN_2746SDEN_0489
SDEG203122 SDE_3177SDE_3181SDE_3180SDE_0532SDE_3178SDE_3179
SBOY300268 SBO_3182SBO_3177SBO_3178SBO_2635SBO_3181SBO_2635SBO_3180
SBAL402882 SHEW185_0688SHEW185_0683SHEW185_0684SHEW185_0685SHEW185_0687SHEW185_1265SHEW185_0686
SBAL399599 SBAL195_0718SBAL195_0713SBAL195_0714SBAL195_0715SBAL195_0717SBAL195_1298SBAL195_0716
SACI56780 SYN_00947SYN_00941SYN_00943SYN_00944SYN_00946SYN_00944SYN_00945
RSPH349102 RSPH17025_2562RSPH17025_2769RSPH17025_2770RSPH17025_2771RSPH17025_2770RSPH17025_1260
RSOL267608 RSC0410RSC0403RSC0406RSC0407RSC0409RSC0408
RPOM246200 SPO_0713SPO_0077SPO_0078SPO_0079SPO_0078SPO_3795
RMET266264 RMET_0305RMET_0297RMET_0300RMET_0302RMET_0304RMET_0302RMET_0303
RFER338969 RFER_1653RFER_0751RFER_0750RFER_0777RFER_0750RFER_0778
REUT381666 H16_A0389H16_A0381H16_A0384H16_A0386H16_A0388H16_A0386H16_A0387
REUT264198 REUT_A0357REUT_A0350REUT_A0353REUT_A0354REUT_A0356REUT_A0354REUT_A0355
PSYR223283 PSPTO_4451PSPTO_4456PSPTO_4455PSPTO_4454PSPTO_4452PSPTO_4454PSPTO_4453
PSYR205918 PSYR_4145PSYR_4150PSYR_4149PSYR_4148PSYR_4146PSYR_4148PSYR_4147
PSTU379731 PST_1033PST_1028PST_1029PST_1030PST_1032PST_1030PST_1031
PSP296591 BPRO_4487BPRO_1300BPRO_4612BPRO_4613BPRO_4486BPRO_4613BPRO_4485
PPUT76869 PPUTGB1_0961PPUTGB1_0956PPUTGB1_0957PPUTGB1_0958PPUTGB1_0960PPUTGB1_0958PPUTGB1_0959
PPUT351746 PPUT_0993PPUT_0988PPUT_0989PPUT_0990PPUT_0992PPUT_0990PPUT_0991
PPUT160488 PP_0954PP_0949PP_0950PP_0951PP_0953PP_0951PP_0952
PPRO298386 PBPRA3253PBPRA3258PBPRA3257PBPRA3256PBPRA3254PBPRA3023PBPRA3255
PNAP365044 PNAP_3708PNAP_0906PNAP_3793PNAP_3794PNAP_3709PNAP_3794PNAP_3710
PMUL272843 PM0172PM0169PM0170PM0092PM0171PM0092
PMEN399739 PMEN_0872PMEN_0867PMEN_0868PMEN_0869PMEN_0871PMEN_0869PMEN_0870
PLUM243265 PLU4039PLU4044PLU4043PLU4042PLU4040PLU1266PLU4041
PING357804 PING_2890PING_2894PING_2893PING_0288PING_2891PING_0288PING_2892
PHAL326442 PSHAA2549PSHAA2554PSHAA2553PSHAA2552PSHAA2550PSHAA2552PSHAA2551
PFLU220664 PFL_0917PFL_0912PFL_0913PFL_0914PFL_0916PFL_0914PFL_0915
PFLU216595 PFLU0884PFLU0879PFLU0880PFLU0881PFLU0883PFLU0881PFLU0882
PFLU205922 PFL_0859PFL_0854PFL_0855PFL_0856PFL_0858PFL_0856PFL_0857
PENT384676 PSEEN1095PSEEN1090PSEEN1091PSEEN1092PSEEN1094PSEEN1092PSEEN1093
PCRY335284 PCRYO_1489PCRYO_0127PCRYO_0224PCRYO_1488PCRYO_0224PCRYO_0223
PCAR338963 PCAR_1940PCAR_1935PCAR_1936PCAR_1937PCAR_1939PCAR_1937PCAR_1938
PATL342610 PATL_0566PATL_0571PATL_0570PATL_0569PATL_0567PATL_0569PATL_0568
PARC259536 PSYC_0925PSYC_0118PSYC_0204PSYC_0926PSYC_0204PSYC_0203
PAER208964 PA4460PA4465PA4464PA4463PA4461PA4463PA4462
PAER208963 PA14_57920PA14_57970PA14_57960PA14_57950PA14_57930PA14_57950PA14_57940
NOCE323261 NOC_2791NOC_2797NOC_2795NOC_2794NOC_2792NOC_2794NOC_2793
NMUL323848 NMUL_A0086NMUL_A0081NMUL_A0083NMUL_A0085NMUL_A0083NMUL_A0084
NEUT335283 NEUT_2301NEUT_1559NEUT_2305NEUT_2304NEUT_2302NEUT_2304NEUT_2303
NEUR228410 NE0064NE1849NE0060NE0061NE0063NE0061NE0062
MXAN246197 MXAN_6564MXAN_1066MXAN_1065MXAN_1060MXAN_1065MXAN_1061
MSUC221988 MS1715MS1718MS1717MS0352MS1716MS0352
MSP400668 MMWYL1_2416MMWYL1_2419MMWYL1_3245MMWYL1_2417MMWYL1_3245MMWYL1_2418
MPET420662 MPE_A0150MPE_A3336MPE_A0225MPE_A0226MPE_A0149MPE_A0226MPE_A0148
MFLA265072 MFLA_0140MFLA_0145MFLA_0143MFLA_0141MFLA_0143MFLA_0142
MCAP243233 MCA_0743MCA_0739MCA_0740MCA_0742MCA_0740MCA_0741
MAQU351348 MAQU_2713MAQU_2718MAQU_2717MAQU_2716MAQU_2714MAQU_2716MAQU_2715
LCHO395495 LCHO_4227LCHO_3490LCHO_0472LCHO_0471LCHO_4226LCHO_0471LCHO_4225
KPNE272620 GKPORF_B2945GKPORF_B2950GKPORF_B2949GKPORF_B2948GKPORF_B2946GKPORF_B2251GKPORF_B2947
JSP375286 MMA_3350MMA_3120MMA_3118MMA_3353MMA_3351MMA_3353MMA_3352
ILOI283942 IL0398IL0393IL0394IL0395IL0397IL0395IL0396
HSOM228400 HSM_1592HSM_1595HSM_1594HSM_0761HSM_1593HSM_0761
HSOM205914 HS_1175HS_1178HS_1177HS_0462HS_1176HS_0462
HINF374930 CGSHIEE_06300CGSHIEE_06315CGSHIEE_06310CGSHIEE_01780CGSHIEE_06305CGSHIEE_01780
HHAL349124 HHAL_2124HHAL_2130HHAL_2128HHAL_2127HHAL_2125HHAL_2127HHAL_2126
HCHE349521 HCH_05318HCH_05324HCH_05323HCH_05322HCH_05319HCH_05322HCH_05320
HARS204773 HEAR3107HEAR2885HEAR2883HEAR3110HEAR3108HEAR3109
GURA351605 GURA_2974GURA_2968GURA_0893GURA_2971GURA_2973GURA_2971GURA_2972
GTHE420246 GTNG_3015GTNG_3217GTNG_3049GTNG_2927GTNG_3049GTNG_3010
GSUL243231 GSU_1889GSU_1884GSU_0735GSU_1886GSU_1888GSU_1886GSU_1887
GMET269799 GMET_1281GMET_1286GMET_2604GMET_1284GMET_1282GMET_1284GMET_1283
GKAU235909 GK3066GK1838GK3109GK2977GK3109GK3061
ESP42895 ENT638_3636ENT638_3641ENT638_3640ENT638_3639ENT638_3637ENT638_3076ENT638_3638
EFER585054 EFER_3177EFER_3182EFER_3181EFER_3180EFER_3178EFER_0471EFER_3179
ECOO157 YHBNYHBJPTSNYHBHYHBGYFIARPON
ECOL83334 ECS4079ECS4084ECS4083ECS4082ECS4080ECS3460ECS4081
ECOL585397 ECED1_3858ECED1_3863ECED1_3862ECED1_3861ECED1_3859ECED1_3037ECED1_3860
ECOL585057 ECIAI39_3695ECIAI39_3700ECIAI39_3699ECIAI39_3698ECIAI39_3696ECIAI39_2802ECIAI39_3697
ECOL585056 ECUMN_3680ECUMN_3685ECUMN_3684ECUMN_3683ECUMN_3681ECUMN_2923ECUMN_3682
ECOL585055 EC55989_3618EC55989_3623EC55989_3622EC55989_3621EC55989_3619EC55989_2887EC55989_3620
ECOL585035 ECS88_3583ECS88_3588ECS88_3587ECS88_3586ECS88_3584ECS88_2784ECS88_3585
ECOL585034 ECIAI1_3348ECIAI1_3353ECIAI1_3352ECIAI1_3351ECIAI1_3349ECIAI1_2719ECIAI1_3350
ECOL481805 ECOLC_0500ECOLC_0495ECOLC_0496ECOLC_0497ECOLC_0499ECOLC_1085ECOLC_0498
ECOL469008 ECBD_0542ECBD_0537ECBD_0538ECBD_0539ECBD_0541ECBD_1088ECBD_0540
ECOL439855 ECSMS35_3496ECSMS35_3501ECSMS35_3500ECSMS35_3499ECSMS35_3497ECSMS35_2750ECSMS35_3498
ECOL413997 ECB_03065ECB_03070ECB_03069ECB_03068ECB_03066ECB_02486ECB_03067
ECOL409438 ECSE_3484ECSE_3489ECSE_3488ECSE_3487ECSE_3485ECSE_2882ECSE_3486
ECOL405955 APECO1_3235APECO1_3230APECO1_3231APECO1_3232APECO1_3234APECO1_3232APECO1_3233
ECOL364106 UTI89_C3636UTI89_C3641UTI89_C3640UTI89_C3639UTI89_C3637UTI89_C2931UTI89_C3638
ECOL362663 ECP_3288ECP_3293ECP_3292ECP_3291ECP_3289ECP_2599ECP_3290
ECOL331111 ECE24377A_3688ECE24377A_3693ECE24377A_3692ECE24377A_3691ECE24377A_3689ECE24377A_2882ECE24377A_3690
ECOL316407 ECK3189:JW3167:B3200ECK3194:JW3172:B3205ECK3193:JW3171:B3204ECK3192:JW3170:B3203ECK3190:JW3168:B3201ECK2594:JW2578:B2597ECK3191:JW3169:B3202
ECOL199310 C3960C3965C3964C3963C3961C3119C3962
ECAR218491 ECA0290ECA0285ECA0286ECA0287ECA0289ECA3349ECA0288
DSHI398580 DSHI_3586DSHI_0209DSHI_3582DSHI_3583DSHI_3585DSHI_3583DSHI_3584
DOLE96561 DOLE_0503DOLE_0504DOLE_0505DOLE_0507DOLE_0505DOLE_0506
DNOD246195 DNO_0534DNO_0399DNO_0614DNO_0533DNO_0614DNO_0532
DARO159087 DARO_3421DARO_0070DARO_4147DARO_4148DARO_4150DARO_4148DARO_4149
CVIO243365 CV_3330CV_3336CV_3334CV_3333CV_3331CV_3333CV_3332
CSAL290398 CSAL_2224CSAL_2229CSAL_2228CSAL_2227CSAL_2225CSAL_2227CSAL_2226
CPSY167879 CPS_4541CPS_4546CPS_4545CPS_4544CPS_4542CPS_4544CPS_4543
CJAP155077 CJA_2803CJA_2809CJA_2808CJA_2807CJA_2804CJA_2807CJA_2806
BVIE269482 BCEP1808_2894BCEP1808_2900BCEP1808_2898BCEP1808_2897BCEP1808_2895BCEP1808_2896
BTHA271848 BTH_I0488BTH_I0482BTH_I0484BTH_I0485BTH_I0487BTH_I0485BTH_I0486
BSUB BSU34770BSU14400BSU35310BSU08310BSU35310BSU34200
BSP36773 BCEP18194_A6119BCEP18194_A6125BCEP18194_A6123BCEP18194_A6122BCEP18194_A6120BCEP18194_A6121
BPSE320372 BURPS1710B_A0809BURPS1710B_A0803BURPS1710B_A0805BURPS1710B_A0806BURPS1710B_A0808BURPS1710B_A0806BURPS1710B_A0807
BPSE272560 BPSL0535BPSL0529BPSL0531BPSL0532BPSL0534BPSL0532BPSL0533
BPET94624 BPET0443BPET0447BPET0448BPET0449BPET0448BPET0085
BPAR257311 BPP4038BPP4034BPP4033BPP4032BPP4033BPP4336
BMAL320389 BMA10247_2944BMA10247_2938BMA10247_2940BMA10247_2941BMA10247_2943BMA10247_2941BMA10247_2942
BMAL320388 BMASAVP1_A0074BMASAVP1_A0080BMASAVP1_A0078BMASAVP1_A0077BMASAVP1_A0075BMASAVP1_A0077BMASAVP1_A0076
BMAL243160 BMA_3105BMA_3112BMA_3110BMA_3109BMA_3107BMA_3109BMA_3108
BCEN331272 BCEN2424_2789BCEN2424_2795BCEN2424_2793BCEN2424_2792BCEN2424_2790BCEN2424_2791
BCEN331271 BCEN_2175BCEN_2181BCEN_2179BCEN_2178BCEN_2176BCEN_2177
BBRO257310 BB4511BB4507BB4506BB4505BB4506BB4922
BAMB398577 BAMMC406_2707BAMMC406_2713BAMMC406_2711BAMMC406_2710BAMMC406_2708BAMMC406_2709
BAMB339670 BAMB_2849BAMB_2855BAMB_2853BAMB_2852BAMB_2850BAMB_2851
ASP76114 EBA1320EBA3650EBA3391EBB108EBA3394EBB108EBA3393
ASP62977 ACIAD1485ACIAD3059ACIAD0658ACIAD1486ACIAD0658ACIAD0657
ASP62928 AZO0791AZO0399AZO0502AZO0503AZO0505AZO0503AZO0504
ASP232721 AJS_0902AJS_3926AJS_3927AJS_0347AJS_3927AJS_0348
ASAL382245 ASA_0313ASA_0318ASA_0317ASA_0316ASA_0314ASA_2799ASA_0315
AHYD196024 AHA_3925AHA_3920AHA_3921AHA_3922AHA_3924AHA_1558AHA_3923
AFER243159 AFE_0083AFE_0089AFE_0087AFE_0086AFE_0084AFE_0086AFE_0085
AEHR187272 MLG_2228MLG_2233MLG_2232MLG_2231MLG_2229MLG_2231MLG_2230
ADEH290397 ADEH_0147ADEH_4165ADEH_4166ADEH_4168ADEH_4166ADEH_4167
ABOR393595 ABO_0554ABO_0549ABO_0550ABO_0551ABO_0553ABO_0551ABO_0552
ABAU360910 BAV3158BAV3156BAV3155BAV3118BAV3155BAV3349
AAVE397945 AAVE_0417AAVE_3603AAVE_4557AAVE_4558AAVE_0418AAVE_4558AAVE_0419


Organism features enriched in list (features available for 163 out of the 170 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00004621192
Disease:Bubonic_plague 0.000446666
Disease:Dysentery 0.000446666
Disease:Gastroenteritis 0.00026761013
Endospores:No 1.581e-733211
Endospores:Yes 0.0004712553
GC_Content_Range4:0-40 1.693e-315213
GC_Content_Range4:40-60 3.777e-13101224
GC_Content_Range4:60-100 0.000220757145
GC_Content_Range7:30-40 1.461e-215166
GC_Content_Range7:50-60 1.264e-1261107
GC_Content_Range7:60-70 0.000032956134
Genome_Size_Range5:0-2 1.438e-232155
Genome_Size_Range5:2-4 1.866e-632197
Genome_Size_Range5:4-6 2.868e-26106184
Genome_Size_Range5:6-10 0.00077382347
Genome_Size_Range9:1-2 2.018e-182128
Genome_Size_Range9:2-3 4.701e-615120
Genome_Size_Range9:4-5 9.510e-115496
Genome_Size_Range9:5-6 1.739e-115288
Genome_Size_Range9:6-8 0.00016712138
Gram_Stain:Gram_Neg 1.338e-26147333
Gram_Stain:Gram_Pos 4.060e-213150
Habitat:Multiple 0.006538461178
Motility:No 3.133e-916151
Motility:Yes 1.667e-13114267
Oxygen_Req:Anaerobic 9.288e-710102
Oxygen_Req:Facultative 1.975e-885201
Pathogenic_in:No 0.003263550226
Pathogenic_in:Plant 0.00025121115
Shape:Coccus 1.110e-7582
Shape:Rod 7.381e-20143347
Shape:Spiral 0.0001392134
Temp._range:Mesophilic 0.0062939142473
Temp._range:Psychrophilic 0.000216389
Temp._range:Thermophilic 0.0032814335



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 141
Effective number of orgs (counting one per cluster within 468 clusters): 123

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TROS309801 ncbi Thermomicrobium roseum DSM 51590
TPEN368408 ncbi Thermofilum pendens Hrk 50
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
STRO369723 ncbi Salinispora tropica CNB-4401
STOK273063 ncbi Sulfolobus tokodaii 70
SSP387093 ncbi Sulfurovum sp. NBC37-11
SSOL273057 ncbi Sulfolobus solfataricus P20
SMAR399550 ncbi Staphylothermus marinus F10
SCO ncbi Streptomyces coelicolor A3(2)1
SAVE227882 ncbi Streptomyces avermitilis MA-46801
SARE391037 ncbi Salinispora arenicola CNS-2051
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RTYP257363 ncbi Rickettsia typhi Wilmington1
RSP357808 ncbi Roseiflexus sp. RS-10
RSP101510 ncbi Rhodococcus jostii RHA11
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332091
RRIC452659 ncbi Rickettsia rickettsii Iowa1
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith1
RPRO272947 ncbi Rickettsia prowazekii Madrid E1
RMAS416276 ncbi Rickettsia massiliae MTU51
RFEL315456 ncbi Rickettsia felis URRWXCal21
RCON272944 ncbi Rickettsia conorii Malish 71
RCAS383372 ncbi Roseiflexus castenholzii DSM 139411
RCAN293613 ncbi Rickettsia canadensis McKiel1
RBEL391896 ncbi Rickettsia bellii OSU 85-3891
RBEL336407 ncbi Rickettsia bellii RML369-C1
RALB246199 Ruminococcus albus 81
RAKA293614 ncbi Rickettsia akari Hartford1
PTOR263820 ncbi Picrophilus torridus DSM 97900
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PHOR70601 ncbi Pyrococcus horikoshii OT30
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PAER178306 ncbi Pyrobaculum aerophilum IM20
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
NSP387092 ncbi Nitratiruptor sp. SB155-21
NSEN222891 ncbi Neorickettsia sennetsu Miyayama1
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
NFAR247156 ncbi Nocardia farcinica IFM 101521
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-11
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra1
MTUB336982 ncbi Mycobacterium tuberculosis F111
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MTBRV ncbi Mycobacterium tuberculosis H37Rv1
MTBCDC ncbi Mycobacterium tuberculosis CDC15511
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSP189918 ncbi Mycobacterium sp. KMS1
MSP164757 ncbi Mycobacterium sp. JLS1
MSP164756 ncbi Mycobacterium sp. MCS1
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-21
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG11
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MLEP272631 ncbi Mycobacterium leprae TN1
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK1
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L11
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273431
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P21
MBOV233413 ncbi Mycobacterium bovis AF2122/971
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MAVI243243 ncbi Mycobacterium avium 1041
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
MABS561007 ncbi Mycobacterium abscessus ATCC 199771
LXYL281090 ncbi Leifsonia xyli xyli CTCB071
KRAD266940 ncbi Kineococcus radiotolerans SRS302161
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSAL478009 ncbi Halobacterium salinarum R10
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
FSP1855 Frankia sp. EAN1pec1
FSP106370 ncbi Frankia sp. CcI31
FALN326424 ncbi Frankia alni ACN14a1
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DSP255470 ncbi Dehalococcoides sp. CBDB10
DSP216389 ncbi Dehalococcoides sp. BAV10
DETH243164 ncbi Dehalococcoides ethenogenes 1950
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10621
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3821
CMIC31964 ncbi Clavibacter michiganensis sepedonicus1
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF81
CJEI306537 ncbi Corynebacterium jeikeium K4111
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130321
CEFF196164 ncbi Corynebacterium efficiens YS-3141
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131291
BXEN266265 ncbi Burkholderia xenovorans LB4001
BTUR314724 ncbi Borrelia turicatae 91E1351
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)0
BHER314723 ncbi Borrelia hermsii DAH1
BCIC186490 Candidatus Baumannia cicadellinicola1
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP1667 Arthrobacter sp.1
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K10
ANAE240017 Actinomyces oris MG11
AMAR234826 ncbi Anaplasma marginale St. Maries0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
ABUT367737 ncbi Arcobacter butzleri RM40181


Names of the homologs of the genes in the group in each of these orgs
  G7665   EG12146   EG11682   EG11681   EG11680   EG11151   EG10898   
WPIP955
WPIP80849
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496
TWHI203267
TVOL273116
TROS309801
TPEN368408
TKOD69014
TACI273075
STRO369723 STROP_3101
STOK273063
SSP387093 SUN_1584
SSOL273057
SMAR399550
SCO SCO1952
SAVE227882 SAV6292
SARE391037 SARE_3328
SACI330779
RTYP257363 RT0493
RSP357808
RSP101510 RHA1_RO07174
RSAL288705 RSAL33209_2275
RRIC452659 RRIOWA_0787
RRIC392021 A1G_03745
RPRO272947 RP508
RMAS416276 RMA_0665
RFEL315456 RF_0717
RCON272944 RC0658
RCAS383372 RCAS_2299
RCAN293613 A1E_02945
RBEL391896 A1I_05000
RBEL336407 RBE_0777
RALB246199 GRAORF_1682
RAKA293614 A1C_03540
PTOR263820
PISL384616
PHOR70601
PFUR186497
PAST100379
PARS340102
PAER178306
PABY272844
OTSU357244
NSP387092 NIS_0851
NSEN222891 NSE_0343
NPHA348780
NFAR247156 NFA35930
MVAN350058 MVAN_2698
MTUB419947 MRA_1430
MTUB336982 TBFG_11450
MTHE349307
MTHE187420
MTBRV RV1421
MTBCDC MT1464
MSYN262723
MSTA339860
MSP189918 MKMS_2443
MSP164757 MJLS_2437
MSP164756 MMCS_2396
MSED399549
MPUL272635
MPNE272634
MPEN272633 MYPE7670
MMYC272632 MSC_0842
MMOB267748
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR368407
MMAR267377
MLEP272631 ML0563
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGIL350054 MFLV_3714
MGEN243273
MFLO265311 MFL181
MCAP340047 MCAP_0853
MBUR259564
MBOV410289 BCG_1482
MBOV233413 MB1456
MBAR269797
MAVI243243 MAV_3359
MART243272
MAEO419665
MACE188937
MABS561007 MAB_2783C
LXYL281090 LXX11490
KRAD266940 KRAD_2934
IHOS453591
HWAL362976
HSP64091
HSAL478009
HMUK485914
HBUT415426
FSP1855 FRANEAN1_2060
FSP106370 FRANCCI3_1634
FALN326424 FRAAL4592
ERUM302409
ERUM254945
ECHA205920
ECAN269484
DSP255470
DSP216389
DETH243164
CSUL444179
CPEL335992 SAR11_0495
CMIC443906 CMM_1747
CMIC31964 CMS1991
CMET456442
CMAQ397948
CKOR374847 KCR_1255
CJEI306537 JK1004
CGLU196627 CG1794
CEFF196164 CE1710
CDIP257309 DIP1313
BXEN266265 BXE_B1172
BTUR314724 BT0466
BSP107806
BHER314723 BH0466
BCIC186490 BCI_0034
BAPH372461
BAPH198804
AYEL322098
AURANTIMONAS
ASP1667 ARTH_2083
APHA212042
APER272557
ANAE240017 ANA_0711
AMAR234826
AFUL224325
ABUT367737 ABU_1274


Organism features enriched in list (features available for 130 out of the 141 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 3.471e-7492
Arrangment:Filaments 0.0089267610
Arrangment:Pairs 0.000288812112
Arrangment:Singles 0.006580075286
Endospores:No 3.569e-1281211
Endospores:Yes 0.0069741553
GC_Content_Range4:40-60 0.006540339224
GC_Content_Range7:0-30 3.826e-82747
GC_Content_Range7:30-40 0.007424927166
GC_Content_Range7:50-60 0.003554914107
GC_Content_Range7:70-100 0.0004149811
Genome_Size_Range5:0-2 1.883e-1470155
Genome_Size_Range5:2-4 0.003418132197
Genome_Size_Range5:4-6 1.487e-620184
Genome_Size_Range9:0-1 4.336e-102127
Genome_Size_Range9:1-2 1.365e-649128
Genome_Size_Range9:4-5 0.0002246996
Genome_Size_Range9:5-6 0.00547691188
Gram_Stain:Gram_Neg 2.390e-1043333
Habitat:Multiple 0.000036722178
Habitat:Specialized 0.00017852353
Motility:No 5.422e-756151
Motility:Yes 2.511e-637267
Optimal_temp.:85 0.002384244
Oxygen_Req:Anaerobic 0.000819335102
Oxygen_Req:Facultative 0.000023926201
Pathogenic_in:Animal 0.0020313666
Pathogenic_in:Human 0.000424832213
Shape:Irregular_coccus 3.532e-121717
Shape:Rod 6.987e-949347
Shape:Sphere 8.670e-91619
Temp._range:Hyperthermophilic 9.310e-81723
Temp._range:Mesophilic 1.437e-686473
Temp._range:Thermophilic 0.00746531435



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951370.6511
GLYCOCAT-PWY (glycogen degradation I)2461540.6404
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181440.6385
AST-PWY (arginine degradation II (AST pathway))120990.6054
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251400.5897
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3001630.5852
PWY-5918 (heme biosynthesis I)2721540.5796
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2861550.5565
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)1491060.5520
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)1761160.5441
PWY-1269 (CMP-KDO biosynthesis I)3251640.5433
ECASYN-PWY (enterobacterial common antigen biosynthesis)1911200.5305
PWY-5386 (methylglyoxal degradation I)3051560.5246
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2901510.5192
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2911510.5171
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2961520.5140
PWY-4041 (γ-glutamyl cycle)2791470.5136
PWY-5755 (4-hydroxybenzoate biosynthesis II (bacteria and fungi))81700.5132
PWY-5148 (acyl-CoA hydrolysis)2271290.5021
NAGLIPASYN-PWY (lipid IVA biosynthesis)3481640.5010
PWY-5913 (TCA cycle variation IV)3011510.4966
TYRFUMCAT-PWY (tyrosine degradation I)1841130.4960
GLUCARDEG-PWY (D-glucarate degradation I)1521000.4910
GALACTITOLCAT-PWY (galactitol degradation)73630.4827
GLUCONSUPER-PWY (D-gluconate degradation)2291270.4822
GLUTATHIONESYN-PWY (glutathione biosynthesis)3391590.4811
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491320.4712
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491320.4712
PWY0-981 (taurine degradation IV)106770.4610
PWY-5857 (ubiquinone-10 biosynthesis (prokaryotic))1831080.4594
LIPASYN-PWY (phospholipases)2121180.4575
PWY0-541 (cyclopropane fatty acid (CFA) biosynthesis)3001450.4553
GLUCARGALACTSUPER-PWY (superpathway of D-glucarate and D-galactarate degradation)135880.4475
PWY0-1182 (trehalose degradation II (trehalase))70580.4439
PWY-5855 (ubiquinone-7 biosynthesis (prokaryotic))1911080.4367
SULFATE-CYS-PWY (superpathway of sulfate assimilation and cysteine biosynthesis)3651590.4346
PWY-6196 (serine racemization)102720.4301
CHOLINE-BETAINE-ANA-PWY (choline degradation I)135860.4300
BETSYN-PWY (glycine betaine biosynthesis I (Gram-negative bacteria))138870.4282
PWY-5856 (ubiquinone-9 biosynthesis (prokaryotic))2551280.4281
GALACTARDEG-PWY (D-galactarate degradation I)151920.4272
GDPRHAMSYN-PWY (GDP-D-rhamnose biosynthesis)156930.4195
PWY0-1329 (succinate to cytochrome bo oxidase electron transfer)96680.4172
PWY0-845 (superpathway of pyridoxal 5'-phosphate biosynthesis and salvage)3291470.4131
PWY-5669 (phosphatidylethanolamine biosynthesis I)4161670.4092
UBISYN-PWY (ubiquinol-8 biosynthesis (prokaryotic))3981630.4081
PWY-3162 (tryptophan degradation V (side chain pathway))94660.4062
P184-PWY (protocatechuate degradation I (meta-cleavage pathway))94660.4062
PWY0-901 (selenocysteine biosynthesis I (bacteria))2301170.4050
GLYOXYLATE-BYPASS (glyoxylate cycle)169960.4043
P601-PWY (D-camphor degradation)95660.4017
PWY-561 (superpathway of glyoxylate cycle)162930.4008
PWY-5340 (sulfate activation for sulfonation)3851590.4001



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG12146   EG11682   EG11681   EG11680   EG11151   EG10898   
G76650.9996230.99970.9996740.9998980.9993530.999775
EG121460.9997350.9997250.9996440.9994820.999739
EG116820.999770.9998650.9996360.999801
EG116810.9997350.9999510.999835
EG116800.9995940.999952
EG111510.999695
EG10898



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PAIRWISE BLAST SCORES:

  G7665   EG12146   EG11682   EG11681   EG11680   EG11151   EG10898   
G76650.0f0------
EG12146-0.0f0-----
EG11682--0.0f0----
EG11681---0.0f0-7.7e-12-
EG11680----0.0f0--
EG11151---7.7e-12-0.0f0-
EG10898------0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- ABC-53-CPLX (LptABCFG ABC transporter) (degree of match pw to cand: 0.400, degree of match cand to pw: 0.286, average score: 0.907)
  Genes in pathway or complex:
             0.9950 0.9692 G7664 (lptC) G7664-MONOMER (LptC)
   *in cand* 0.9998 0.9996 EG11680 (lptB) YHBG-MONOMER (LptB)
   *in cand* 0.9997 0.9994 G7665 (lptA) YHBN-MONOMER (LptA)
             0.6946 0.4672 G7888 (lptF) G7888-MONOMER (LptF)
             0.7782 0.6083 G7889 (lptG) G7889-MONOMER (LptG)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9998 0.9997 EG10898 (rpoN) RPON-MONOMER (RNA polymerase, sigma 54 (sigma N) factor)
   *in cand* 0.9997 0.9994 EG11151 (raiA) EG11151-MONOMER (stationary phase translation inhibitor and ribosome stability factor)
   *in cand* 0.9998 0.9997 EG11681 (hpf) EG11681-MONOMER (predicted ribosome-associated, sigma 54 modulation protein)
   *in cand* 0.9998 0.9996 EG11682 (ptsN) EG11682-MONOMER (phosphotransferase system enzyme IIA, regulates N metabolism)
   *in cand* 0.9997 0.9995 EG12146 (yhbJ) EG12146-MONOMER (predicted P-loop containing ATPase)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10898 EG11680 EG11681 EG11682 EG12146 G7665 (centered at EG11681)
EG11151 (centered at EG11151)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7665   EG12146   EG11682   EG11681   EG11680   EG11151   EG10898   
191/623381/623344/623346/623388/623321/623340/623
AAEO224324:0:Tyes1241---0-132
AAUR290340:2:Tyes-1511--0--
AAVE397945:0:Tyes0313040704071140712
ABAC204669:0:Tyes-2138--091
ABAU360910:0:Tyes-403836036234
ABOR393595:0:Tyes5012423
ABUT367737:0:Tyes----0--
ACAU438753:0:Tyes--0-3624-3623
ACEL351607:0:Tyes-200--0--
ACRY349163:8:Tyes-0--1225-1575
ADEH290397:0:Tyes-040554056405840564057
AEHR187272:0:Tyes0543132
AFER243159:0:Tyes0643132
AHYD196024:0:Tyes2271226622672268227002269
ALAI441768:0:Tyes--1290---
AMAR329726:9:Tyes---0934--
AMET293826:0:Tyes-3197390-02728
ANAE240017:0:Tyes-0-----
AORE350688:0:Tyes-0-1971-1971378
APLE416269:0:Tyes301-2569-
APLE434271:0:Tno301-2540-
ASAL382245:5:Tyes0543123952
ASP1667:3:Tyes-0-----
ASP232721:2:Tyes-54834923493034931
ASP62928:0:Tyes4000104105107105106
ASP62977:0:Tyes7892232-179010
ASP76114:2:Tyes0135912141215121712151216
AVAR240292:3:Tyes---224902249-
BABO262698:1:Tno--4-031
BAFZ390236:2:Fyes----23-0
BAMB339670:3:Tno06431-2
BAMB398577:3:Tno06431-2
BAMY326423:0:Tyes-7790826-826731
BANT260799:0:Tno-145501490-14901442
BANT261594:2:Tno-145901493-14931447
BANT568206:2:Tyes-452904564-45644517
BANT592021:2:Tno-149601532-15321484
BBAC264462:0:Tyes----0-1
BBAC360095:0:Tyes--0-3--
BBRO257310:0:Tyes-62101420
BBUR224326:21:Fno----16-0
BCAN483179:1:Tno--4-0-1
BCEN331271:2:Tno06431-2
BCEN331272:3:Tyes06431-2
BCER226900:1:Tyes-140501439-14391392
BCER288681:0:Tno-139001425-14251372
BCER315749:1:Tyes-126301289-12891250
BCER405917:1:Tyes-145801491-14911445
BCER572264:1:Tno-142601461-14611397
BCIC186490:0:Tyes-0-----
BCLA66692:0:Tyes-263002663-26632619
BFRA272559:1:Tyes----0-263
BFRA295405:0:Tno----0-292
BGAR290434:2:Fyes----21-0
BHAL272558:0:Tyes-278002819-28192774
BHEN283166:0:Tyes--1-0--
BHER314723:0:Fyes----0--
BJAP224911:0:Fyes--3-021
BLIC279010:0:Tyes-200402048-20481956
BLON206672:0:Tyes-0--1023--
BMAL243160:1:Tno0643132
BMAL320388:1:Tno0643132
BMAL320389:1:Tyes6023534
BMEL224914:1:Tno--0-413
BMEL359391:1:Tno--4-031
BOVI236:1:Tyes--3-0-1
BPAR257311:0:Tno-62101290
BPER257313:0:Tyes-496499-500-0
BPET94624:0:Tyes-3603643653663650
BPSE272560:1:Tyes6023534
BPSE320372:1:Tno6023534
BPSE320373:1:Tno502-4-3
BPUM315750:0:Tyes-292302987-29872870
BQUI283165:0:Tyes--1-0--
BSP36773:2:Tyes06431-2
BSP376:0:Tyes--0-312
BSUB:0:Tyes-28016622854028542743
BSUI204722:1:Tyes--4-0-1
BSUI470137:1:Tno--4-0-1
BTHA271848:1:Tno6023534
BTHE226186:0:Tyes-0--2245-903
BTHU281309:1:Tno-136001396-13961348
BTHU412694:1:Tno-127601312-13121263
BTRI382640:1:Tyes--1-0--
BTUR314724:0:Fyes----0--
BVIE269482:7:Tyes06431-2
BWEI315730:4:Tyes-147001504-15041455
BXEN266265:1:Tyes------0
CABO218497:0:Tyes--317-0-928
CACE272562:1:Tyes-29202630-2630487
CAULO:0:Tyes--0-4-3
CBEI290402:0:Tyes-434513950--162
CBLO203907:0:Tyes1---0--
CBLO291272:0:Tno1---0--
CBOT36826:1:Tno-317017860-051
CBOT441770:0:Tyes-313016830-052
CBOT441771:0:Tno-298916820-051
CBOT441772:1:Tno-320617830-052
CBOT498213:1:Tno-321817570-056
CBOT508765:1:Tyes-2796-0-02522
CBOT515621:2:Tyes-336519370-053
CBOT536232:0:Tno-347119150-051
CBUR227377:1:Tyes2--010-
CBUR360115:1:Tno0--212-
CBUR434922:2:Tno2--010-
CCAV227941:1:Tyes--328-0-960
CCHL340177:0:Tyes----0-535
CCON360104:2:Tyes368---0-1
CCUR360105:0:Tyes----1-0
CDES477974:0:Tyes-0-1747-1747-
CDIF272563:1:Tyes-331229242347-03085
CDIP257309:0:Tyes-0-----
CEFF196164:0:Fyes-0-----
CFEL264202:1:Tyes--652-996-0
CFET360106:0:Tyes----02181
CGLU196627:0:Tyes-0-----
CHOM360107:1:Tyes----5020-
CHUT269798:0:Tyes----485-0
CHYD246194:0:Tyes-116-020180123
CJAP155077:0:Tyes0654143
CJEI306537:0:Tyes-0-----
CJEJ192222:0:Tyes----0-1
CJEJ195099:0:Tno----0-1
CJEJ354242:2:Tyes----0-1
CJEJ360109:0:Tyes----1-0
CJEJ407148:0:Tno----0-1
CKLU431943:1:Tyes-802-8560856268
CKOR374847:0:Tyes----0--
CMIC31964:2:Tyes-0-----
CMIC443906:2:Tyes-0-----
CMUR243161:1:Tyes--533-0-865
CNOV386415:0:Tyes-0-1615-1615117
CPEL335992:0:Tyes----0--
CPER195102:1:Tyes-0-1832-1832957
CPER195103:0:Tno-02162051-20511156
CPER289380:3:Tyes-0-1780-1780958
CPHY357809:0:Tyes-76-032470-
CPNE115711:1:Tyes--683-0-1065
CPNE115713:0:Tno--0-677-726
CPNE138677:0:Tno--0-684-735
CPNE182082:0:Tno--0-712-762
CPRO264201:0:Fyes--075105-1674
CPSY167879:0:Tyes0543132
CRUT413404:0:Tyes0--344834344-
CSAL290398:0:Tyes0543132
CSP501479:6:Fyes-0-----
CSP501479:7:Fyes3-0-2--
CSP501479:8:Fyes------0
CSP78:2:Tyes--4-0-1
CTEP194439:0:Tyes----697-0
CTET212717:0:Tyes-1992-0-047
CTRA471472:0:Tyes--535-0-870
CTRA471473:0:Tno--535-0-870
CVES412965:0:Tyes---04440-
CVIO243365:0:Tyes0643132
DARO159087:0:Tyes3381041084109411141094110
DDES207559:0:Tyes-4320-1
DGEO319795:1:Tyes-136-7900790-
DHAF138119:0:Tyes-3-29-290
DNOD246195:0:Tyes1310-210130210129
DOLE96561:0:Tyes-012423
DPSY177439:2:Tyes----0-1
DRAD243230:3:Tyes-350-010290-
DRED349161:0:Tyes-61-86-860
DSHI398580:5:Tyes3418034143415341734153416
DVUL882:1:Tyes-43-0-1
ECAR218491:0:Tyes5012430903
ECOL199310:0:Tno8268318308298270828
ECOL316407:0:Tno5915965955945920593
ECOL331111:6:Tno7737787777767740775
ECOL362663:0:Tno6957006996986960697
ECOL364106:1:Tno7057107097087060707
ECOL405955:2:Tyes0543132
ECOL409438:6:Tyes6156206196186160617
ECOL413997:0:Tno5885935925915890590
ECOL439855:4:Tno7117167157147120713
ECOL469008:0:Tno501245603
ECOL481805:0:Tno501245973
ECOL585034:0:Tno6226276266256230624
ECOL585035:0:Tno7837887877867840785
ECOL585055:0:Tno7207257247237210722
ECOL585056:2:Tno7537587577567540755
ECOL585057:0:Tno9109159149139110912
ECOL585397:0:Tno8078128118108080809
ECOL83334:0:Tno6376426416406380639
ECOLI:0:Tno6036086076066040605
ECOO157:0:Tno6426476466456430644
EFAE226185:3:Tyes-6701026-102681
EFER585054:1:Tyes2696270127002699269702698
ELIT314225:0:Tyes-02202-245922032458
ESP42895:1:Tyes5665715705695670568
FALN326424:0:Tyes-0-----
FJOH376686:0:Tyes----0-304
FMAG334413:1:Tyes-7159210-0-
FNOD381764:0:Tyes-1093--0-1119
FNUC190304:0:Tyes-62810300234--
FPHI484022:1:Tyes---03340-
FRANT:0:Tno---2300230-
FSP106370:0:Tyes-0-----
FSP1855:0:Tyes-0-----
FSUC59374:0:Tyes--342-1-0
FTUL351581:0:Tno---1000100-
FTUL393011:0:Tno---88088-
FTUL393115:0:Tyes---2280228-
FTUL401614:0:Tyes---3920392-
FTUL418136:0:Tno---03220-
FTUL458234:0:Tno---88088-
GBET391165:0:Tyes-0--302-301
GFOR411154:0:Tyes----494-0
GKAU235909:1:Tyes-125301296116312961247
GMET269799:1:Tyes0513303132
GOXY290633:5:Tyes-0--1019-1018
GSUL243231:0:Tyes1147114201144114611441145
GTHE420246:1:Tyes-88290122012283
GURA351605:0:Tyes2079207302076207820762077
GVIO251221:0:Tyes-3418-02509--
HACI382638:1:Tyes----1-0
HARS204773:0:Tyes21620219217-218
HAUR316274:2:Tyes---4202--0
HCHE349521:0:Tyes0543132
HDUC233412:0:Tyes301-2472-
HHAL349124:0:Tyes0643132
HHEP235279:0:Tyes256---1-0
HINF281310:0:Tyes864861862-8630-
HINF374930:0:Tyes77177477307720-
HINF71421:0:Tno873870871-8720-
HMAR272569:7:Tyes--0----
HMAR272569:8:Tyes----0--
HMOD498761:0:Tyes-374-4150415370
HNEP81032:0:Tyes0-3033-130342
HPY:0:Tno----1-0
HPYL357544:1:Tyes----1-0
HPYL85963:0:Tno----1-0
HSOM205914:1:Tyes71471771607150-
HSOM228400:0:Tno83683983808370-
ILOI283942:0:Tyes5012423
JSP290400:1:Tyes33200-21-
JSP375286:0:Tyes23420237235237236
KPNE272620:2:Tyes6816866856846820683
KRAD266940:2:Fyes-0-----
LACI272621:0:Tyes-1810460-0-
LBIF355278:2:Tyes----0-1
LBIF456481:2:Tno----0-1
LBOR355276:1:Tyes--01297798-797
LBOR355277:1:Tno--7926861-0
LBRE387344:2:Tyes-25-0-0-
LCAS321967:1:Tyes-3116790---
LCHO395495:0:Tyes3784304210378303782
LDEL321956:0:Tyes-1311070-0-
LDEL390333:0:Tyes-1210510-0-
LGAS324831:0:Tyes-111601133-1133-
LHEL405566:0:Tyes-138580-0-
LINN272626:1:Tno-221602253-22532153
LINT189518:1:Tyes--05621786-1785
LINT267671:1:Tno--13789350-1
LINT363253:3:Tyes-3--0-1
LJOH257314:0:Tyes-5750554-554-
LLAC272622:5:Tyes-3533400-0-
LLAC272623:0:Tyes-318-0-0-
LMES203120:1:Tyes---0-0-
LMON169963:0:Tno-210302140-21402089
LMON265669:0:Tyes-198702024-20241975
LPLA220668:0:Tyes-3611530-043
LPNE272624:0:Tno360--035901
LPNE297245:1:Fno352--035101
LPNE297246:1:Fyes356--035501
LPNE400673:0:Tno0--3991399398
LREU557436:0:Tyes-22-0-0-
LSAK314315:0:Tyes-325580-0-
LSPH444177:1:Tyes-347-1085445210850
LWEL386043:0:Tyes-203602073-20732024
LXYL281090:0:Tyes-0-----
MABS561007:1:Tyes-0-----
MAER449447:0:Tyes---04020--
MAQU351348:2:Tyes0543132
MAVI243243:0:Tyes-0-----
MBOV233413:0:Tno-0-----
MBOV410289:0:Tno-0-----
MCAP243233:0:Tyes40-1312
MCAP340047:0:Tyes--0----
MEXT419610:0:Tyes--3-0-1
MFLA265072:0:Tyes05-3132
MFLO265311:0:Tyes--0----
MGIL350054:3:Tyes-0-----
MLEP272631:0:Tyes-0-----
MLOT266835:2:Tyes--0-3-2
MMAG342108:0:Tyes-4602-0-1
MMAR394221:0:Tyes--0-312
MMYC272632:0:Tyes--0----
MPEN272633:0:Tyes--0----
MPET420662:1:Tyes2318177781780
MSME246196:0:Tyes-1848--0--
MSP164756:1:Tno-0-----
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