CANDIDATE ID: 98

CANDIDATE ID: 98

NUMBER OF GENES: 7
AVERAGE SCORE:    9.9964971e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G377 (fliI) (b1941)
   Products of gene:
     - G377-MONOMER (flagellum-specific ATP synthase FliI)
     - CPLX0-7451 (Flagellar Export Apparatus)
     - CPLX0-7452 (Flagellum)

- EG11656 (fliH) (b1940)
   Products of gene:
     - EG11656-MONOMER (flagellar biosynthesis protein FliH)
     - CPLX0-7451 (Flagellar Export Apparatus)
     - CPLX0-7452 (Flagellum)

- EG11654 (fliG) (b1939)
   Products of gene:
     - FLIG-FLAGELLAR-SWITCH-PROTEIN (flagellar motor switch protein FliG)
     - CPLX0-7450 (Flagellar Motor Switch Complex)
     - FLAGELLAR-MOTOR-COMPLEX (Flagellar Motor Complex)
     - CPLX0-7452 (Flagellum)

- EG11388 (fliS) (b1925)
   Products of gene:
     - EG11388-MONOMER (flagellar biosynthesis protein FliS)

- EG11347 (fliF) (b1938)
   Products of gene:
     - FLIF-FLAGELLAR-MS-RING (flagellar M-ring protein FliF; basal-body MS(membrane and supramembrane)-ring and collar protein)
     - FLAGELLAR-MOTOR-COMPLEX (Flagellar Motor Complex)
     - CPLX0-7452 (Flagellum)

- EG11346 (fliE) (b1937)
   Products of gene:
     - EG11346-MONOMER (flagellar basal-body protein FliE)
     - FLAGELLAR-MOTOR-COMPLEX (Flagellar Motor Complex)
     - CPLX0-7452 (Flagellum)

- EG10841 (fliD) (b1924)
   Products of gene:
     - EG10841-MONOMER (flagellar cap protein FliD; filament capping protein; enables filament assembly)
     - CPLX0-7452 (Flagellum)



Back to top


ORGANISMS CONTAINING AT LEAST 6 GENES FROM THE GROUP:

Total number of orgs: 174
Effective number of orgs (counting one per cluster within 468 clusters): 119

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317587
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329537
YPES386656 ncbi Yersinia pestis Pestoides F7
YPES377628 ncbi Yersinia pestis Nepal5167
YPES360102 ncbi Yersinia pestis Antiqua7
YPES349746 ncbi Yersinia pestis Angola7
YPES214092 ncbi Yersinia pestis CO927
YPES187410 ncbi Yersinia pestis KIM 107
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80817
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A6
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110186
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103316
XCAM487884 Xanthomonas campestris pv. paulliniae7
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-107
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80046
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339137
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3066
VVUL216895 ncbi Vibrio vulnificus CMCP67
VVUL196600 ncbi Vibrio vulnificus YJ0167
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106337
VFIS312309 ncbi Vibrio fischeri ES1147
VEIS391735 ncbi Verminephrobacter eiseniae EF01-27
VCHO345073 ncbi Vibrio cholerae O3957
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169617
TTUR377629 ncbi Teredinibacter turnerae T79017
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB46
TSP28240 Thermotoga sp.6
TSP1755 Thermoanaerobacter sp.6
TROS309801 ncbi Thermomicrobium roseum DSM 51596
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332236
TPET390874 ncbi Thermotoga petrophila RKU-16
TMAR243274 ncbi Thermotoga maritima MSB86
TLET416591 ncbi Thermotoga lettingae TMO6
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252597
TCRU317025 ncbi Thiomicrospira crunogena XCL-26
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT27
STHE292459 ncbi Symbiobacterium thermophilum IAM 148636
SSP94122 ncbi Shewanella sp. ANA-37
SSON300269 ncbi Shigella sonnei Ss0467
SSED425104 ncbi Shewanella sediminis HAW-EB37
SPRO399741 ncbi Serratia proteamaculans 5687
SPEA398579 ncbi Shewanella pealeana ATCC 7003457
SONE211586 ncbi Shewanella oneidensis MR-17
SLOI323850 ncbi Shewanella loihica PV-47
SHIGELLA ncbi Shigella flexneri 2a str. 2457T6
SHAL458817 ncbi Shewanella halifaxensis HAW-EB47
SGLO343509 ncbi Sodalis glossinidius morsitans7
SFLE373384 ncbi Shigella flexneri 5 str. 84016
SFLE198214 ncbi Shigella flexneri 2a str. 3016
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4767
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B677
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91507
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT187
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty27
SDEN318161 ncbi Shewanella denitrificans OS2177
SDEG203122 ncbi Saccharophagus degradans 2-407
SBAL402882 ncbi Shewanella baltica OS1857
SBAL399599 ncbi Shewanella baltica OS1957
SACI56780 ncbi Syntrophus aciditrophicus SB6
RSOL267608 ncbi Ralstonia solanacearum GMI10007
RMET266264 ncbi Ralstonia metallidurans CH347
RFER338969 ncbi Rhodoferax ferrireducens T1187
REUT381666 ncbi Ralstonia eutropha H167
REUT264198 ncbi Ralstonia eutropha JMP1347
PTHE370438 ncbi Pelotomaculum thermopropionicum SI7
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30007
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a6
PSTU379731 ncbi Pseudomonas stutzeri A15017
PPUT76869 ncbi Pseudomonas putida GB-17
PPUT351746 ncbi Pseudomonas putida F17
PPUT160488 ncbi Pseudomonas putida KT24407
PPRO298386 ncbi Photobacterium profundum SS97
PMOB403833 ncbi Petrotoga mobilis SJ956
PMEN399739 ncbi Pseudomonas mendocina ymp7
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO17
PING357804 ncbi Psychromonas ingrahamii 376
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1257
PFLU220664 ncbi Pseudomonas fluorescens Pf-57
PFLU216595 ncbi Pseudomonas fluorescens SBW257
PFLU205922 ncbi Pseudomonas fluorescens Pf0-17
PENT384676 ncbi Pseudomonas entomophila L487
PCAR338963 ncbi Pelobacter carbinolicus DSM 23806
PATL342610 ncbi Pseudoalteromonas atlantica T6c7
PAER208964 ncbi Pseudomonas aeruginosa PAO17
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA147
OIHE221109 ncbi Oceanobacillus iheyensis HTE8316
NOCE323261 ncbi Nitrosococcus oceani ATCC 197077
NMUL323848 ncbi Nitrosospira multiformis ATCC 251967
NEUT335283 ncbi Nitrosomonas eutropha C917
NEUR228410 ncbi Nitrosomonas europaea ATCC 197187
MTHE264732 ncbi Moorella thermoacetica ATCC 390737
MSP400668 ncbi Marinomonas sp. MWYL17
MPET420662 ncbi Methylibium petroleiphilum PM17
MFLA265072 ncbi Methylobacillus flagellatus KT7
MAQU351348 ncbi Marinobacter aquaeolei VT87
LPNE400673 ncbi Legionella pneumophila Corby6
LPNE297246 ncbi Legionella pneumophila Paris6
LPNE297245 ncbi Legionella pneumophila Lens6
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 16
LCHO395495 ncbi Leptothrix cholodnii SP-67
JSP375286 ncbi Janthinobacterium sp. Marseille7
ILOI283942 ncbi Idiomarina loihiensis L2TR6
HMOD498761 ncbi Heliobacterium modesticaldum Ice16
HHAL349124 ncbi Halorhodospira halophila SL17
HCHE349521 ncbi Hahella chejuensis KCTC 23967
HARS204773 ncbi Herminiimonas arsenicoxydans7
GURA351605 ncbi Geobacter uraniireducens Rf46
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-26
GSUL243231 ncbi Geobacter sulfurreducens PCA6
GMET269799 ncbi Geobacter metallireducens GS-156
GKAU235909 ncbi Geobacillus kaustophilus HTA4266
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B16
ESP42895 Enterobacter sp.7
EFER585054 ncbi Escherichia fergusonii ATCC 354697
ECOO157 ncbi Escherichia coli O157:H7 EDL9337
ECOL83334 Escherichia coli O157:H77
ECOL585397 ncbi Escherichia coli ED1a7
ECOL585057 ncbi Escherichia coli IAI396
ECOL585056 ncbi Escherichia coli UMN0267
ECOL585055 ncbi Escherichia coli 559897
ECOL585035 ncbi Escherichia coli S887
ECOL585034 ncbi Escherichia coli IAI17
ECOL481805 ncbi Escherichia coli ATCC 87397
ECOL469008 ncbi Escherichia coli BL21(DE3)7
ECOL439855 ncbi Escherichia coli SMS-3-57
ECOL409438 ncbi Escherichia coli SE117
ECOL405955 ncbi Escherichia coli APEC O17
ECOL364106 ncbi Escherichia coli UTI897
ECOL362663 ncbi Escherichia coli 5367
ECOL331111 ncbi Escherichia coli E24377A7
ECOL316407 ncbi Escherichia coli K-12 substr. W31107
ECOL199310 ncbi Escherichia coli CFT0737
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10437
DRED349161 ncbi Desulfotomaculum reducens MI-16
DPSY177439 ncbi Desulfotalea psychrophila LSv546
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G206
DARO159087 ncbi Dechloromonas aromatica RCB7
CVIO243365 ncbi Chromobacterium violaceum ATCC 124727
CSAL290398 ncbi Chromohalobacter salexigens DSM 30437
CPSY167879 ncbi Colwellia psychrerythraea 34H7
CJAP155077 Cellvibrio japonicus7
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29016
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C7
CBOT498213 ncbi Clostridium botulinum B1 str. Okra6
BVIE269482 ncbi Burkholderia vietnamiensis G47
BTHA271848 ncbi Burkholderia thailandensis E2647
BSUB ncbi Bacillus subtilis subtilis 1686
BSP36773 Burkholderia sp.7
BPUM315750 ncbi Bacillus pumilus SAFR-0326
BPSE320373 ncbi Burkholderia pseudomallei 6687
BPSE320372 ncbi Burkholderia pseudomallei 1710b7
BPSE272560 ncbi Burkholderia pseudomallei K962437
BPET94624 Bordetella petrii7
BPER257313 ncbi Bordetella pertussis Tohama I7
BPAR257311 ncbi Bordetella parapertussis 128226
BMAL320389 ncbi Burkholderia mallei NCTC 102477
BMAL320388 ncbi Burkholderia mallei SAVP17
BMAL243160 ncbi Burkholderia mallei ATCC 233447
BLIC279010 ncbi Bacillus licheniformis ATCC 145806
BCLA66692 ncbi Bacillus clausii KSM-K166
BCEN331272 ncbi Burkholderia cenocepacia HI24247
BCEN331271 ncbi Burkholderia cenocepacia AU 10547
BBRO257310 ncbi Bordetella bronchiseptica RB507
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1006
BAMY326423 ncbi Bacillus amyloliquefaciens FZB426
BAMB398577 ncbi Burkholderia ambifaria MC40-67
BAMB339670 ncbi Burkholderia ambifaria AMMD7
ASP62928 ncbi Azoarcus sp. BH727
ASP232721 ncbi Acidovorax sp. JS426
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4497
AHYD196024 Aeromonas hydrophila dhakensis7
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-17
ABAU360910 ncbi Bordetella avium 197N7
AAVE397945 ncbi Acidovorax citrulli AAC00-16


Names of the homologs of the genes in the group in each of these orgs
  G377   EG11656   EG11654   EG11388   EG11347   EG11346   EG10841   
YPSE349747 YPSIP31758_2293YPSIP31758_2292YPSIP31758_2291YPSIP31758_2284YPSIP31758_2290YPSIP31758_2289YPSIP31758_2283
YPSE273123 YPTB1700YPTB1701YPTB1702YPTB1712YPTB1703YPTB1704YPTB1713
YPES386656 YPDSF_1297YPDSF_1296YPDSF_1295YPDSF_1286YPDSF_1294YPDSF_1293YPDSF_1285
YPES377628 YPN_2296YPN_2295YPN_2294YPN_2283YPN_2293YPN_2292YPN_2282
YPES360102 YPA_1203YPA_1204YPA_1205YPA_1216YPA_1206YPA_1207YPA_1217
YPES349746 YPANGOLA_A2011YPANGOLA_A2012YPANGOLA_A2013YPANGOLA_A2021YPANGOLA_A2014YPANGOLA_A2015YPANGOLA_A2022
YPES214092 YPO1827YPO1828YPO1829YPO1840YPO1830YPO1831YPO1841
YPES187410 Y2479Y2478Y2477Y2467Y2476Y2475Y2466
YENT393305 YE2540YE2539YE2538YE2525YE2537YE2536YE2524
XORY360094 XOOORF_2836XOOORF_2834XOOORF_2815XOOORF_2833XOOORF_2832XOOORF_2814
XORY342109 XOO2463XOO2461XOO2441XOO2460XOO2459XOO2440
XORY291331 XOO2604XOO2602XOO2583XOO2601XOO2600XOO2582
XCAM487884 XCC-B100_2220XCC-B100_2221XCC-B100_2222XCC-B100_2236XCC-B100_2223XCC-B100_2224XCC-B100_2238
XCAM316273 XCAORF_2191XCAORF_2192XCAORF_2193XCAORF_2217XCAORF_2194XCAORF_2195XCAORF_2218
XCAM314565 XC_2263XC_2261XC_2247XC_2260XC_2259XC_2246
XCAM190485 XCC1923XCC1924XCC1925XCC1939XCC1926XCC1927XCC1940
XAXO190486 XAC1951XAC1953XAC1973XAC1954XAC1955XAC1974
VVUL216895 VV1_1938VV1_1937VV1_1936VV1_1930VV1_1935VV1_1934VV1_1928
VVUL196600 VV2478VV2479VV2480VV2487VV2481VV2482VV2489
VPAR223926 VP2246VP2247VP2248VP2254VPA1536VP2250VPA1550
VFIS312309 VF1849VF1850VF1851VF1858VF1852VF1853VF1860
VEIS391735 VEIS_1116VEIS_1115VEIS_1114VEIS_1110VEIS_1113VEIS_1112VEIS_4396
VCHO345073 VC0395_A1714VC0395_A1715VC0395_A1716VC0395_A1722VC0395_A1717VC0395_A1718VC0395_A1724
VCHO VC2130VC2131VC2132VC2138VC2133VC2134VC2140
TTUR377629 TERTU_1334TERTU_1333TERTU_1332TERTU_1319TERTU_1331TERTU_1330TERTU_1316
TTEN273068 TTE1439TTE1441TTE0506TTE1442TTE1443TTE0505
TSP28240 TRQ2_0730TRQ2_0728TRQ2_1640TRQ2_0727TRQ2_1463TRQ2_1693
TSP1755 TETH514_1690TETH514_1692TETH514_0465TETH514_1693TETH514_1694TETH514_0464
TROS309801 TRD_A0648TRD_A0650TRD_A0221TRD_A0651TRD_A0652TRD_A0220
TPSE340099 TETH39_1254TETH39_1256TETH39_1770TETH39_1257TETH39_1258TETH39_1771
TPET390874 TPET_0706TPET_0704TPET_1574TPET_0703TPET_1417TPET_1623
TMAR243274 TM_0218TM_0220TM_1179TM_0221TM_1366TM_1123
TLET416591 TLET_1901TLET_1899TLET_1994TLET_1898TLET_0081TLET_0171
TDEN292415 TBD_1603TBD_1090TBD_1601TBD_1593TBD_1600TBD_1599TBD_1592
TCRU317025 TCR_1439TCR_1441TCR_1448TCR_1442TCR_1443TCR_1449
STYP99287 STM1972STM1971STM1970STM1961STM1969STM1968STM1960
STHE292459 STH3000STH3002STH2976STH3003STH3004STH2977
SSP94122 SHEWANA3_1345SHEWANA3_1344SHEWANA3_1343SHEWANA3_1337SHEWANA3_1342SHEWANA3_1341SHEWANA3_1335
SSON300269 SSO_1999SSO_1998SSO_1997SSO_1981SSO_1996SSO_1995SSO_1980
SSED425104 SSED_3063SSED_3064SSED_3065SSED_3071SSED_0077SSED_3067SSED_3073
SPRO399741 SPRO_2950SPRO_2949SPRO_2948SPRO_2942SPRO_2947SPRO_2946SPRO_2941
SPEA398579 SPEA_1364SPEA_1363SPEA_1362SPEA_1356SPEA_0083SPEA_1360SPEA_1354
SONE211586 SO_3225SO_3226SO_3227SO_3233SO_3228SO_3229SO_3235
SLOI323850 SHEW_1369SHEW_1368SHEW_1367SHEW_1361SHEW_1366SHEW_1365SHEW_1359
SHIGELLA FLIIFLIHFLIGFLISFLIEFLID
SHAL458817 SHAL_1451SHAL_1450SHAL_1449SHAL_1443SHAL_4239SHAL_1447SHAL_1441
SGLO343509 SG0050SG0051SG0052SG0056SG0053SG0054SG0057
SFLE373384 SFV_1984SFV_1983SFV_1982SFV_1969SFV_1980SFV_1968
SFLE198214 AAN43533.1AAN43532.1AAN43531.1AAN43518.1AAN43530.1AAN43517.1
SENT454169 SEHA_C2188SEHA_C2187SEHA_C2186SEHA_C2176SEHA_C2185SEHA_C2183SEHA_C2175
SENT321314 SCH_1977SCH_1976SCH_1975SCH_1965SCH_1974SCH_1972SCH_1964
SENT295319 SPA0898SPA0899SPA0900SPA0909SPA0901SPA0902SPA0910
SENT220341 STY2180STY2179STY2178STY2169STY2177STY2176STY2168
SENT209261 T0905T0906T0907T0916T0908T0909T0917
SDEN318161 SDEN_1327SDEN_1326SDEN_1325SDEN_1319SDEN_3659SDEN_0052SDEN_1317
SDEG203122 SDE_2185SDE_2186SDE_2187SDE_2197SDE_2188SDE_2189SDE_2198
SBAL402882 SHEW185_2933SHEW185_2934SHEW185_2935SHEW185_2941SHEW185_2936SHEW185_2937SHEW185_2943
SBAL399599 SBAL195_3065SBAL195_3066SBAL195_3067SBAL195_3073SBAL195_3068SBAL195_3069SBAL195_3075
SACI56780 SYN_01473SYN_01471SYN_02806SYN_01470SYN_01469SYN_02805
RSOL267608 RSP0393RSP0392RSP0391RSP0384RSP0390RSP0389RSP0383
RMET266264 RMET_5264RMET_5263RMET_5262RMET_5255RMET_5261RMET_5259RMET_2267
RFER338969 RFER_0553RFER_0552RFER_0551RFER_0633RFER_0550RFER_0549RFER_0632
REUT381666 H16_B2371H16_B2370H16_B2369H16_B2363H16_B2368H16_B2367H16_B2362
REUT264198 REUT_B5100REUT_B5099REUT_B5098REUT_B5092REUT_B5097REUT_B5096REUT_B5091
PTHE370438 PTH_2085PTH_2087PTH_2088PTH_2095PTH_2089PTH_2090PTH_2096
PSYR223283 PSPTO_1961PSPTO_1960PSPTO_1959PSPTO_1952PSPTO_1958PSPTO_1957PSPTO_1951
PSYR205918 PSYR_3454PSYR_3456PSYR_3463PSYR_3457PSYR_3458PSYR_3464
PSTU379731 PST_2587PST_2588PST_2589PST_1866PST_2590PST_2591PST_1406
PPUT76869 PPUTGB1_3927PPUTGB1_3928PPUTGB1_3929PPUTGB1_3936PPUTGB1_3930PPUTGB1_3931PPUTGB1_3937
PPUT351746 PPUT_1501PPUT_1500PPUT_1499PPUT_1492PPUT_1498PPUT_1497PPUT_1491
PPUT160488 PP_4366PP_4367PP_4368PP_4375PP_4369PP_4370PP_4376
PPRO298386 PBPRA0926PBPRA0925PBPRA0924PBPRA0043PBPRA0022PBPRA0922PBPRA0915
PMOB403833 PMOB_1376PMOB_1374PMOB_1487PMOB_1373PMOB_1686PMOB_0353
PMEN399739 PMEN_2822PMEN_2823PMEN_2824PMEN_2831PMEN_2825PMEN_2826PMEN_0186
PLUM243265 PLU1945PLU1946PLU1947PLU1952PLU1948PLU1949PLU1953
PING357804 PING_3562PING_3563PING_3564PING_3585PING_3565PING_3566
PHAL326442 PSHAA0795PSHAA0794PSHAA0793PSHAA0786PSHAA0792PSHAA0791PSHAA0784
PFLU220664 PFL_1641PFL_1640PFL_1639PFL_1632PFL_1638PFL_1637PFL_1631
PFLU216595 PFLU4436PFLU4437PFLU4438PFLU4445PFLU4439PFLU4440PFLU4446
PFLU205922 PFL_1539PFL_1538PFL_1537PFL_1530PFL_1536PFL_1535PFL_1529
PENT384676 PSEEN3813PSEEN3814PSEEN3815PSEEN3823PSEEN3816PSEEN3817PSEEN3824
PCAR338963 PCAR_1189PCAR_1191PCAR_1111PCAR_1192PCAR_1193PCAR_1112
PATL342610 PATL_3044PATL_3045PATL_3046PATL_3082PATL_3047PATL_3048PATL_3083
PAER208964 PA1104PA1103PA1102PA1095PA1101PA1100PA1094
PAER208963 PA14_50100PA14_50110PA14_50130PA14_50250PA14_50140PA14_50160PA14_50270
OIHE221109 OB1558OB1556OB2500OB1555OB1554OB2501
NOCE323261 NOC_2356NOC_2357NOC_2358NOC_2364NOC_2359NOC_2360NOC_2365
NMUL323848 NMUL_A1348NMUL_A1347NMUL_A1346NMUL_A1340NMUL_A1345NMUL_A1344NMUL_A1339
NEUT335283 NEUT_0742NEUT_0743NEUT_0744NEUT_0949NEUT_0745NEUT_0748NEUT_0950
NEUR228410 NE2086NE2085NE2084NE1596NE2083NE2080NE1595
MTHE264732 MOTH_0774MOTH_0773MOTH_0772MOTH_0766MOTH_0771MOTH_0770MOTH_0765
MSP400668 MMWYL1_3445MMWYL1_3446MMWYL1_3447MMWYL1_3567MMWYL1_3448MMWYL1_3449MMWYL1_3568
MPET420662 MPE_A0568MPE_A0567MPE_A0566MPE_A2864MPE_A0565MPE_A0564MPE_A2865
MFLA265072 MFLA_1975MFLA_1976MFLA_1977MFLA_1983MFLA_1978MFLA_1979MFLA_1984
MAQU351348 MAQU_1994MAQU_1995MAQU_1996MAQU_2589MAQU_1997MAQU_1998MAQU_2590
LPNE400673 LPC_1198LPC_1200LPC_0753LPC_1201LPC_1202LPC_0754
LPNE297246 LPP1721LPP1723LPP1291LPP1724LPP1725LPP1292
LPNE297245 LPL1721LPL1723LPL1290LPL1724LPL1725LPL1291
LPNE272624 LPG1757LPG1759LPG1337LPG1760LPG1761LPG1338
LCHO395495 LCHO_1019LCHO_1018LCHO_1017LCHO_1012LCHO_1016LCHO_1015LCHO_1011
JSP375286 MMA_1438MMA_1439MMA_1440MMA_1447MMA_1441MMA_1442MMA_1448
ILOI283942 IL1197IL1199IL1133IL1200IL1201IL1134
HMOD498761 HM1_2224HM1_2222HM1_1251HM1_2221HM1_2220HM1_1627
HHAL349124 HHAL_0495HHAL_0496HHAL_0497HHAL_0503HHAL_0498HHAL_0499HHAL_0504
HCHE349521 HCH_05190HCH_05191HCH_05192HCH_04817HCH_05194HCH_04079HCH_04818
HARS204773 HEAR1879HEAR1878HEAR1877HEAR1869HEAR1876HEAR1874HEAR1868
GURA351605 GURA_4210GURA_4212GURA_4093GURA_4213GURA_4214GURA_4094
GTHE420246 GTNG_1075GTNG_1073GTNG_3068GTNG_1072GTNG_1071GTNG_3054
GSUL243231 GSU_0413GSU_0411GSU_3036GSU_0410GSU_0409GSU_3037
GMET269799 GMET_3109GMET_3111GMET_0445GMET_3112GMET_3113GMET_0444
GKAU235909 GK1222GK1220GK3113GK1219GK1218GK3114
FNOD381764 FNOD_0758FNOD_0833FNOD_0821FNOD_0834FNOD_1716FNOD_0400
ESP42895 ENT638_2532ENT638_2531ENT638_2530ENT638_2524ENT638_2529ENT638_2528ENT638_2523
EFER585054 EFER_1926EFER_1925EFER_1924EFER_1168EFER_1923EFER_1921EFER_1169
ECOO157 FLIIFLIHFLIGFLISFLIFFLIEFLID
ECOL83334 ECS2680ECS2679ECS2678ECS2664ECS2677ECS2676ECS2663
ECOL585397 ECED1_2208ECED1_2207ECED1_2206ECED1_2190ECED1_2205ECED1_2204ECED1_2189
ECOL585057 ECIAI39_1115ECIAI39_1116ECIAI39_1130ECIAI39_1121ECIAI39_1122ECIAI39_1131
ECOL585056 ECUMN_2233ECUMN_2232ECUMN_2231ECUMN_2217ECUMN_2230ECUMN_2229ECUMN_2216
ECOL585055 EC55989_2161EC55989_2160EC55989_2159EC55989_2146EC55989_2158EC55989_2157EC55989_2145
ECOL585035 ECS88_1994ECS88_1993ECS88_1992ECS88_1979ECS88_1991ECS88_1990ECS88_1978
ECOL585034 ECIAI1_2022ECIAI1_2021ECIAI1_2020ECIAI1_2011ECIAI1_2019ECIAI1_2018ECIAI1_2010
ECOL481805 ECOLC_1701ECOLC_1702ECOLC_1703ECOLC_1714ECOLC_1704ECOLC_1705ECOLC_1715
ECOL469008 ECBD_1704ECBD_1705ECBD_1706ECBD_1717ECBD_1707ECBD_1708ECBD_1718
ECOL439855 ECSMS35_1243ECSMS35_1244ECSMS35_1245ECSMS35_1256ECSMS35_1246ECSMS35_1247ECSMS35_1257
ECOL409438 ECSE_2172ECSE_2171ECSE_2170ECSE_2156ECSE_2169ECSE_2168ECSE_2155
ECOL405955 APECO1_980APECO1_979APECO1_978APECO1_966APECO1_977APECO1_976APECO1_965
ECOL364106 UTI89_C2141UTI89_C2140UTI89_C2139UTI89_C2126UTI89_C2138UTI89_C2137UTI89_C2125
ECOL362663 ECP_1875ECP_1874ECP_1873ECP_1859ECP_1872ECP_1871ECP_1858
ECOL331111 ECE24377A_2174ECE24377A_2173ECE24377A_2172ECE24377A_2160ECE24377A_2171ECE24377A_2170ECE24377A_2159
ECOL316407 ECK1939:JW1925:B1941ECK1938:JW1924:B1940ECK1937:JW1923:B1939ECK1924:JW1910:B1925ECK1936:JW1922:B1938ECK1935:JW1921:B1937ECK1923:JW1909:B1924
ECOL199310 C2358C2357C2355C2340C2354C2353C2339
ECAR218491 ECA1723ECA1724ECA1725ECA1729ECA1726ECA1727ECA1730
DRED349161 DRED_2405DRED_2406DRED_2407DRED_2415DRED_2408DRED_2409
DPSY177439 DP2659DP2657DP1658DP2656DP2655DP1659
DDES207559 DDE_0350DDE_0352DDE_1119DDE_0353DDE_0354DDE_1120
DARO159087 DARO_0770DARO_0771DARO_0772DARO_0781DARO_0773DARO_0776DARO_0782
CVIO243365 CV_3134CV_2997CV_3135CV_2993CV_3136CV_3137CV_2305
CSAL290398 CSAL_1958CSAL_1957CSAL_1956CSAL_2032CSAL_1955CSAL_1954CSAL_2033
CPSY167879 CPS_1505CPS_1504CPS_1503CPS_1496CPS_1502CPS_1501CPS_1492
CJAP155077 CJA_1716CJA_1715CJA_1714CJA_1701CJA_1713CJA_1712CJA_1916
CHYD246194 CHY_0996CHY_0994CHY_0986CHY_0993CHY_0992CHY_0985
CDES477974 DAUD_1762DAUD_1763DAUD_1764DAUD_1784DAUD_1765DAUD_1766DAUD_1783
CBOT498213 CLD_1904CLD_1902CLD_1840CLD_1901CLD_1900CLD_1841
BVIE269482 BCEP1808_3152BCEP1808_3151BCEP1808_3150BCEP1808_3147BCEP1808_3149BCEP1808_3148BCEP1808_0198
BTHA271848 BTH_I0197BTH_I0198BTH_I0199BTH_I0202BTH_I0200BTH_I0201BTH_I3197
BSUB BSU16240BSU16220BSU35330BSU16210BSU16200BSU35340
BSP36773 BCEP18194_A6416BCEP18194_A6415BCEP18194_A6414BCEP18194_A6411BCEP18194_A6413BCEP18194_A6412BCEP18194_C7620
BPUM315750 BPUM_1522BPUM_1520BPUM_3183BPUM_1519BPUM_1518BPUM_3184
BPSE320373 BURPS668_0219BURPS668_0220BURPS668_0221BURPS668_0224BURPS668_0222BURPS668_0223BURPS668_3871
BPSE320372 BURPS1710B_A0437BURPS1710B_A0438BURPS1710B_A0439BURPS1710B_A0442BURPS1710B_A0440BURPS1710B_A0441BURPS1710B_A0098
BPSE272560 BPSL0227BPSL0228BPSL0229BPSL0232BPSL0230BPSL0231BPSL3320
BPET94624 BPET2144BPET2145BPET2146BPET2153BPET2147BPET2148BPET2154
BPER257313 BP1400BP1401BP1402BP1409BP1403BP1404BP1410
BPAR257311 BPP1507BPP1508BPP1509BPP1516BPP1511BPP1517
BMAL320389 BMA10247_3403BMA10247_3402BMA10247_3401BMA10247_3398BMA10247_3400BMA10247_3399BMA10247_3101
BMAL320388 BMASAVP1_A2943BMASAVP1_A2944BMASAVP1_A2945BMASAVP1_A2948BMASAVP1_A2946BMASAVP1_A2947BMASAVP1_A3449
BMAL243160 BMA_3278BMA_3279BMA_3280BMA_3283BMA_3281BMA_3282BMA_2874
BLIC279010 BL01269BL01271BL03377BL01272BL01273BL03376
BCLA66692 ABC2266ABC2268ABC3073ABC2269ABC2270ABC3074
BCEN331272 BCEN2424_3067BCEN2424_3066BCEN2424_3065BCEN2424_3062BCEN2424_3064BCEN2424_3063BCEN2424_0240
BCEN331271 BCEN_2453BCEN_2452BCEN_2451BCEN_2448BCEN_2450BCEN_2449BCEN_2867
BBRO257310 BB2585BB2586BB2587BB2594BB2588BB2589BB2595
BBAC264462 BD3401BD3403BD0611BD3404BD3405BD0610
BAMY326423 RBAM_016070RBAM_016050RBAM_032490RBAM_016040RBAM_016030RBAM_032500
BAMB398577 BAMMC406_2978BAMMC406_2977BAMMC406_2976BAMMC406_2973BAMMC406_2975BAMMC406_2974BAMMC406_0168
BAMB339670 BAMB_3112BAMB_3111BAMB_3110BAMB_3107BAMB_3109BAMB_3108BAMB_0155
ASP62928 AZO2719AZO2718AZO2717AZO2707AZO2716AZO2713AZO2706
ASP232721 AJS_3804AJS_3806AJS_3810AJS_3807AJS_3808AJS_3811
ASAL382245 ASA_1340ASA_1339ASA_1338ASA_0380ASA_0355ASA_1336ASA_2659
AHYD196024 AHA_1368AHA_1367AHA_1366AHA_1702AHA_1365AHA_1364AHA_1701
AEHR187272 MLG_0712MLG_0711MLG_0710MLG_0704MLG_0709MLG_0708MLG_0703
ABAU360910 BAV1713BAV1714BAV1715BAV1722BAV1716BAV1717BAV1723
AAVE397945 AAVE_4392AAVE_4394AAVE_4398AAVE_4395AAVE_4396AAVE_4399


Organism features enriched in list (features available for 165 out of the 174 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00029491392
Disease:Bubonic_plague 0.000481066
Disease:Gastroenteritis 0.00029901013
Disease:Legionnaire's_disease 0.006249444
Endospores:No 1.684e-636211
GC_Content_Range4:0-40 2.165e-2213213
GC_Content_Range4:40-60 1.668e-1199224
GC_Content_Range4:60-100 0.003564353145
GC_Content_Range7:0-30 1.542e-6147
GC_Content_Range7:30-40 1.035e-1412166
GC_Content_Range7:40-50 0.004356744117
GC_Content_Range7:50-60 1.139e-855107
GC_Content_Range7:60-70 0.000463653134
Genome_Size_Range5:0-2 1.858e-223155
Genome_Size_Range5:2-4 0.001179241197
Genome_Size_Range5:4-6 5.339e-1998184
Genome_Size_Range5:6-10 0.00092952347
Genome_Size_Range9:1-2 2.365e-173128
Genome_Size_Range9:2-3 0.000010016120
Genome_Size_Range9:4-5 1.338e-74996
Genome_Size_Range9:5-6 2.734e-94988
Genome_Size_Range9:6-8 0.00005602238
Gram_Stain:Gram_Neg 2.650e-17138333
Gram_Stain:Gram_Pos 5.409e-1015150
Habitat:Host-associated 0.000509642206
Motility:No 5.598e-1410151
Motility:Yes 2.359e-20125267
Optimal_temp.:- 0.008459884257
Optimal_temp.:37 0.000590717106
Oxygen_Req:Facultative 0.000356374201
Pathogenic_in:Plant 0.0073381915
Shape:Coccus 4.506e-12182
Shape:Rod 1.141e-18143347
Shape:Spiral 0.0008386234
Temp._range:Psychrophilic 0.002511479



Back to top


ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 323
Effective number of orgs (counting one per cluster within 468 clusters): 249

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
XFAS405440 ncbi Xylella fastidiosa M120
XFAS183190 ncbi Xylella fastidiosa Temecula10
XFAS160492 ncbi Xylella fastidiosa 9a5c0
XAUT78245 ncbi Xanthobacter autotrophicus Py20
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTHE300852 ncbi Thermus thermophilus HB80
TTHE262724 ncbi Thermus thermophilus HB270
TPEN368408 ncbi Thermofilum pendens Hrk 50
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TFUS269800 ncbi Thermobifida fusca YX0
TERY203124 ncbi Trichodesmium erythraeum IMS1010
TELO197221 ncbi Thermosynechococcus elongatus BP-10
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
STRO369723 ncbi Salinispora tropica CNB-4400
STOK273063 ncbi Sulfolobus tokodaii 70
STHE322159 ncbi Streptococcus thermophilus LMD-90
STHE299768 ncbi Streptococcus thermophilus CNRZ10660
STHE264199 ncbi Streptococcus thermophilus LMG 183110
SSUI391296 ncbi Streptococcus suis 98HAH330
SSUI391295 ncbi Streptococcus suis 05ZYH330
SSP84588 ncbi Synechococcus sp. WH 81020
SSP64471 ncbi Synechococcus sp. CC93110
SSP387093 ncbi Sulfurovum sp. NBC37-10
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)0
SSP321327 ncbi Synechococcus sp. JA-3-3Ab0
SSP1148 ncbi Synechocystis sp. PCC 68030
SSP1131 Synechococcus sp. CC96050
SSOL273057 ncbi Sulfolobus solfataricus P20
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153050
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370552 ncbi Streptococcus pyogenes MGAS102700
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103940
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SPNE488221 ncbi Streptococcus pneumoniae 705850
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-60
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-140
SPNE171101 ncbi Streptococcus pneumoniae R60
SPNE170187 ncbi Streptococcus pneumoniae G540
SPNE1313 Streptococcus pneumoniae0
SMUT210007 ncbi Streptococcus mutans UA1590
SMAR399550 ncbi Staphylothermus marinus F10
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14350
SGOR29390 Streptococcus gordonii Challis0
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB0
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23380
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122280
SEPI176279 ncbi Staphylococcus epidermidis RP62A0
SELO269084 ncbi Synechococcus elongatus PCC 63010
SCO ncbi Streptomyces coelicolor A3(2)0
SAVE227882 ncbi Streptomyces avermitilis MA-46800
SAUR93062 ncbi Staphylococcus aureus aureus COL0
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83250
SAUR426430 ncbi Staphylococcus aureus aureus Newman0
SAUR418127 ncbi Staphylococcus aureus aureus Mu30
SAUR367830 Staphylococcus aureus aureus USA3000
SAUR359787 ncbi Staphylococcus aureus aureus JH10
SAUR359786 ncbi Staphylococcus aureus aureus JH90
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4760
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2520
SAUR273036 ncbi Staphylococcus aureus RF1220
SAUR196620 ncbi Staphylococcus aureus aureus MW20
SAUR158879 ncbi Staphylococcus aureus aureus N3150
SAUR158878 ncbi Staphylococcus aureus aureus Mu500
SARE391037 ncbi Salinispora arenicola CNS-2050
SAGA211110 ncbi Streptococcus agalactiae NEM3160
SAGA208435 ncbi Streptococcus agalactiae 2603V/R1
SAGA205921 ncbi Streptococcus agalactiae A9090
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99410
RTYP257363 ncbi Rickettsia typhi Wilmington0
RSP357808 ncbi Roseiflexus sp. RS-10
RSP101510 ncbi Rhodococcus jostii RHA10
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332090
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RMAS416276 ncbi Rickettsia massiliae MTU50
RFEL315456 ncbi Rickettsia felis URRWXCal20
RCON272944 ncbi Rickettsia conorii Malish 70
RCAS383372 ncbi Roseiflexus castenholzii DSM 139410
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RALB246199 Ruminococcus albus 80
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97900
PSP56811 Psychrobacter sp.0
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-10
PSP296591 ncbi Polaromonas sp. JS6660
PRUM264731 ncbi Prevotella ruminicola 230
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257451
PNAP365044 ncbi Polaromonas naphthalenivorans CJ20
PMUL272843 ncbi Pasteurella multocida multocida Pm700
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74547 ncbi Prochlorococcus marinus MIT 93130
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR59920 ncbi Prochlorococcus marinus NATL2A0
PMAR167555 ncbi Prochlorococcus marinus NATL1A0
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13750
PMAR146891 ncbi Prochlorococcus marinus AS96010
PLUT319225 ncbi Chlorobium luteolum DSM 2730
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 170
PHOR70601 ncbi Pyrococcus horikoshii OT30
PGIN242619 ncbi Porphyromonas gingivalis W830
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PDIS435591 ncbi Parabacteroides distasonis ATCC 85030
PCRY335284 ncbi Psychrobacter cryohalolentis K50
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PARC259536 ncbi Psychrobacter arcticus 273-40
PAER178306 ncbi Pyrobaculum aerophilum IM20
PACN267747 ncbi Propionibacterium acnes KPA1712020
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
NSP103690 ncbi Nostoc sp. PCC 71200
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
NMEN374833 ncbi Neisseria meningitidis 0534420
NMEN272831 ncbi Neisseria meningitidis FAM180
NMEN122587 ncbi Neisseria meningitidis Z24910
NMEN122586 ncbi Neisseria meningitidis MC580
NGON242231 ncbi Neisseria gonorrhoeae FA 10900
NFAR247156 ncbi Nocardia farcinica IFM 101520
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124440
MXAN246197 ncbi Myxococcus xanthus DK 16221
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-10
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra0
MTUB336982 ncbi Mycobacterium tuberculosis F110
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MTBRV ncbi Mycobacterium tuberculosis H37Rv0
MTBCDC ncbi Mycobacterium tuberculosis CDC15510
MSYN262723 ncbi Mycoplasma synoviae 530
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E0
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSP189918 ncbi Mycobacterium sp. KMS0
MSP164757 ncbi Mycobacterium sp. JLS0
MSP164756 ncbi Mycobacterium sp. MCS0
MSME246196 ncbi Mycobacterium smegmatis MC2 1550
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK0
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MCAP243233 ncbi Methylococcus capsulatus Bath0
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P20
MBOV233413 ncbi Mycobacterium bovis AF2122/970
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MAVI243243 ncbi Mycobacterium avium 1040
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAER449447 ncbi Microcystis aeruginosa NIES-8430
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
MABS561007 ncbi Mycobacterium abscessus ATCC 199770
LSAK314315 ncbi Lactobacillus sakei sakei 23K0
LREU557436 ncbi Lactobacillus reuteri DSM 200160
LPLA220668 ncbi Lactobacillus plantarum WCFS10
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82930
LLAC272623 ncbi Lactococcus lactis lactis Il14030
LLAC272622 ncbi Lactococcus lactis cremoris SK110
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LCAS321967 ncbi Lactobacillus casei ATCC 3340
LBRE387344 ncbi Lactobacillus brevis ATCC 3670
LACI272621 ncbi Lactobacillus acidophilus NCFM0
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785780
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSOM228400 ncbi Haemophilus somnus 23360
HSOM205914 ncbi Haemophilus somnus 129PT0
HSAL478009 ncbi Halobacterium salinarum R10
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMAR272569 ncbi Haloarcula marismortui ATCC 430490
HINF71421 ncbi Haemophilus influenzae Rd KW200
HINF374930 ncbi Haemophilus influenzae PittEE0
HINF281310 ncbi Haemophilus influenzae 86-028NP0
HDUC233412 ncbi Haemophilus ducreyi 35000HP0
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237790
GVIO251221 ncbi Gloeobacter violaceus PCC 74210
GFOR411154 ncbi Gramella forsetii KT08030
GBET391165 ncbi Granulibacter bethesdensis CGDNIH10
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-000
FTUL418136 ncbi Francisella tularensis tularensis WY96-34180
FTUL401614 ncbi Francisella novicida U1120
FTUL393115 ncbi Francisella tularensis tularensis FSC1980
FTUL393011 ncbi Francisella tularensis holarctica OSU180
FTUL351581 Francisella tularensis holarctica FSC2000
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S850
FSP1855 Frankia sp. EAN1pec0
FSP106370 ncbi Frankia sp. CcI30
FRANT ncbi Francisella tularensis tularensis SCHU S40
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250170
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255860
FMAG334413 ncbi Finegoldia magna ATCC 293280
FJOH376686 ncbi Flavobacterium johnsoniae UW1010
FALN326424 ncbi Frankia alni ACN14a0
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ELIT314225 ncbi Erythrobacter litoralis HTCC25940
EFAE226185 ncbi Enterococcus faecalis V5830
ECOL413997 ncbi Escherichia coli B str. REL6060
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DSP255470 ncbi Dehalococcoides sp. CBDB10
DSP216389 ncbi Dehalococcoides sp. BAV10
DRAD243230 ncbi Deinococcus radiodurans R10
DOLE96561 ncbi Desulfococcus oleovorans Hxd30
DNOD246195 ncbi Dichelobacter nodosus VCS1703A0
DGEO319795 ncbi Deinococcus geothermalis DSM 113000
DETH243164 ncbi Dehalococcoides ethenogenes 1950
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA0
CTEP194439 ncbi Chlorobium tepidum TLS0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE251
CPNE182082 ncbi Chlamydophila pneumoniae TW-1831
CPNE138677 ncbi Chlamydophila pneumoniae J1381
CPNE115713 ncbi Chlamydophila pneumoniae CWL0291
CPNE115711 ncbi Chlamydophila pneumoniae AR391
CPER289380 ncbi Clostridium perfringens SM1010
CPER195103 ncbi Clostridium perfringens ATCC 131240
CPER195102 ncbi Clostridium perfringens 130
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10620
CMUR243161 ncbi Chlamydia muridarum Nigg1
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3820
CMIC31964 ncbi Clavibacter michiganensis sepedonicus0
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CJEI306537 ncbi Corynebacterium jeikeium K4110
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334060
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3810
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130320
CFEL264202 ncbi Chlamydophila felis Fe/C-561
CEFF196164 ncbi Corynebacterium efficiens YS-3140
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131290
CCHL340177 ncbi Chlorobium chlorochromatii CaD30
CCAV227941 ncbi Chlamydophila caviae GPIC1
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1110
CBUR360115 ncbi Coxiella burnetii RSA 3310
CBUR227377 ncbi Coxiella burnetii RSA 4930
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN0
CBLO203907 ncbi Candidatus Blochmannia floridanus0
CABO218497 ncbi Chlamydophila abortus S26/31
BXEN266265 ncbi Burkholderia xenovorans LB4001
BTRI382640 ncbi Bartonella tribocorum CIP 1054760
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54820
BSUI470137 ncbi Brucella suis ATCC 234451
BSUI204722 ncbi Brucella suis 13301
BQUI283165 ncbi Bartonella quintana Toulouse0
BOVI236 Brucella ovis1
BMEL359391 ncbi Brucella melitensis biovar Abortus 23081
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M1
BLON206672 ncbi Bifidobacterium longum NCC27050
BHEN283166 ncbi Bartonella henselae Houston-10
BFRA295405 ncbi Bacteroides fragilis YCH460
BFRA272559 ncbi Bacteroides fragilis NCTC 93430
BCIC186490 Candidatus Baumannia cicadellinicola0
BCAN483179 ncbi Brucella canis ATCC 233651
BANT261594 ncbi Bacillus anthracis Ames Ancestor1
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9411
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AVAR240292 ncbi Anabaena variabilis ATCC 294130
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP76114 ncbi Aromatoleum aromaticum EbN10
ASP62977 ncbi Acinetobacter sp. ADP10
ASP1667 Arthrobacter sp.0
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL030
APLE416269 ncbi Actinobacillus pleuropneumoniae L200
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K10
ANAE240017 Actinomyces oris MG10
AMAR329726 ncbi Acaryochloris marina MBIC110170
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232700
ABOR393595 ncbi Alcanivorax borkumensis SK20
AAUR290340 ncbi Arthrobacter aurescens TC10


Names of the homologs of the genes in the group in each of these orgs
  G377   EG11656   EG11654   EG11388   EG11347   EG11346   EG10841   
XFAS405440
XFAS183190
XFAS160492
XAUT78245
WPIP955
WPIP80849
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496
TWHI203267
TVOL273116
TTHE300852
TTHE262724
TPEN368408
TKOD69014
TFUS269800
TERY203124
TELO197221
TACI273075
STRO369723
STOK273063
STHE322159
STHE299768
STHE264199
SSUI391296
SSUI391295
SSP84588
SSP64471
SSP387093
SSP321332
SSP321327
SSP1148
SSP1131
SSOL273057
SSAP342451
SPYO370554
SPYO370553
SPYO370552
SPYO370551
SPYO319701
SPYO293653
SPYO286636
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SPNE488221
SPNE487214
SPNE487213
SPNE171101
SPNE170187
SPNE1313
SMUT210007
SMAR399550
SHAE279808
SGOR29390
SFUM335543
SERY405948
SEPI176280
SEPI176279
SELO269084
SCO
SAVE227882
SAUR93062
SAUR93061
SAUR426430
SAUR418127
SAUR367830
SAUR359787
SAUR359786
SAUR282459
SAUR282458
SAUR273036
SAUR196620
SAUR158879
SAUR158878
SARE391037
SAGA211110
SAGA208435 SAG_1462
SAGA205921
SACI330779
RXYL266117
RTYP257363
RSP357808
RSP101510
RSAL288705
RRIC452659
RRIC392021
RPRO272947
RMAS416276
RFEL315456
RCON272944
RCAS383372
RCAN293613
RBEL391896
RBEL336407
RALB246199
RAKA293614
PTOR263820
PSP56811
PSP312153
PSP296591
PRUM264731
PPEN278197 PEPE_0059
PNAP365044
PMUL272843
PMAR93060
PMAR74547
PMAR74546
PMAR59920
PMAR167555
PMAR167546
PMAR167542
PMAR167540
PMAR167539
PMAR146891
PLUT319225
PISL384616
PINT246198
PHOR70601
PGIN242619
PFUR186497
PDIS435591
PCRY335284
PAST100379
PARS340102
PARC259536
PAER178306
PACN267747
PABY272844
OTSU357244
NSP103690
NSEN222891
NPHA348780
NMEN374833
NMEN272831
NMEN122587
NMEN122586
NGON242231
NFAR247156
NARO279238
MXAN246197 MXAN_2442
MVAN350058
MTUB419947
MTUB336982
MTHE349307
MTHE187420
MTBRV
MTBCDC
MSYN262723
MSUC221988
MSTA339860
MSP189918
MSP164757
MSP164756
MSME246196
MSED399549
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR368407
MMAR267377
MLEP272631
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGIL350054
MGEN243273
MFLO265311
MCAP340047
MCAP243233
MBUR259564
MBOV410289
MBOV233413
MBAR269797
MAVI243243
MART243272
MAER449447
MAEO419665
MACE188937
MABS561007
LSAK314315
LREU557436
LPLA220668
LMES203120
LLAC272623
LLAC272622
LJOH257314
LHEL405566
LGAS324831
LDEL390333
LDEL321956
LCAS321967
LBRE387344
LACI272621
KPNE272620
IHOS453591
HWAL362976
HSP64091
HSOM228400
HSOM205914
HSAL478009
HMUK485914
HMAR272569
HINF71421
HINF374930
HINF281310
HDUC233412
HBUT415426
HAUR316274
GVIO251221
GFOR411154
GBET391165
FTUL458234
FTUL418136
FTUL401614
FTUL393115
FTUL393011
FTUL351581
FSUC59374
FSP1855
FSP106370
FRANT
FPHI484022
FNUC190304
FMAG334413
FJOH376686
FALN326424
ERUM302409
ERUM254945
ELIT314225
EFAE226185
ECOL413997
ECHA205920
ECAN269484
DSP255470
DSP216389
DRAD243230
DOLE96561
DNOD246195
DGEO319795
DETH243164
CVES412965
CTEP194439
CSUL444179
CRUT413404
CPRO264201 PC1397
CPNE182082 CPB0734
CPNE138677 CPJ0707
CPNE115713 CPN0707
CPNE115711 CP_0039
CPER289380
CPER195103
CPER195102
CPEL335992
CMUR243161 TC_0040
CMIC443906
CMIC31964
CMET456442
CMAQ397948
CKOR374847
CJEI306537
CHUT269798
CHOM360107
CGLU196627
CFEL264202 CF0970
CEFF196164
CDIP257309
CCHL340177
CCAV227941 CCA_00035
CBUR434922
CBUR360115
CBUR227377
CBLO291272
CBLO203907
CABO218497 CAB036
BXEN266265 BXE_B0090
BTRI382640
BTHE226186
BSUI470137 BSUIS_B0135
BSUI204722 BR_A1146
BQUI283165
BOVI236 GBOORFA1138
BMEL359391 BAB2_1105
BMEL224914 BMEII0151
BLON206672
BHEN283166
BFRA295405
BFRA272559
BCIC186490
BCAN483179 BCAN_B1175
BANT261594 GBAA1679
BABO262698 BRUAB2_1083
AYEL322098
AVAR240292
AURANTIMONAS
ASP76114
ASP62977
ASP1667
APLE434271
APLE416269
APHA212042
APER272557
ANAE240017
AMAR329726
AMAR234826
ALAI441768
AFUL224325
AFER243159
ABOR393595
AAUR290340


Organism features enriched in list (features available for 303 out of the 323 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Aggregates 0.002611199
Arrangment:Clusters 0.00019571617
Arrangment:Filaments 0.00133741010
Disease:Pharyngitis 0.005089588
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 0.00068391111
Disease:Wide_range_of_infections 0.00068391111
Disease:bronchitis_and_pneumonitis 0.005089588
Disease:gastroenteritis 0.0009169113
Endospores:No 2.654e-8141211
Endospores:Yes 3.815e-61253
GC_Content_Range4:0-40 1.838e-7140213
GC_Content_Range4:60-100 0.000037255145
GC_Content_Range7:30-40 3.642e-7113166
GC_Content_Range7:50-60 0.006520245107
GC_Content_Range7:60-70 1.446e-646134
Genome_Size_Range5:0-2 8.903e-18125155
Genome_Size_Range5:2-4 0.0000519124197
Genome_Size_Range5:4-6 1.474e-2736184
Genome_Size_Range9:1-2 2.615e-16106128
Genome_Size_Range9:2-3 1.746e-889120
Genome_Size_Range9:4-5 5.914e-151696
Genome_Size_Range9:5-6 1.035e-92088
Genome_Size_Range9:6-8 0.00176681138
Gram_Stain:Gram_Neg 1.625e-17123333
Gram_Stain:Gram_Pos 3.139e-7104150
Habitat:Host-associated 0.0000484129206
Habitat:Multiple 0.000019570178
Habitat:Terrestrial 0.0046979931
Motility:No 2.144e-29135151
Motility:Yes 6.523e-4953267
Optimal_temp.:- 0.0005470115257
Optimal_temp.:30-35 0.009903877
Optimal_temp.:30-37 0.00446971518
Optimal_temp.:37 0.000234371106
Oxygen_Req:Microaerophilic 0.0000286118
Shape:Coccobacillus 0.00718881011
Shape:Coccus 4.581e-207882
Shape:Irregular_coccus 0.00001181717
Shape:Rod 4.337e-16133347
Shape:Sphere 0.00049291719
Temp._range:Mesophilic 0.0096866236473



Back to top


ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 2
Effective number of orgs (counting one per cluster within 468 clusters): 2

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
TPAL243276 ncbi Treponema pallidum pallidum Nichols 0.00307062495
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C 0.00630959617


Names of the homologs of the genes in the group in each of these orgs
  G377   EG11656   EG11654   EG11388   EG11347   EG11346   EG10841   
TPAL243276 TP_0402TP_0400TP_0943TP_0399TP_0872
CDES477974 DAUD_1762DAUD_1763DAUD_1764DAUD_1784DAUD_1765DAUD_1766DAUD_1783


Organism features enriched in list (features available for 2 out of the 2 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Disease:Syphilis 0.003430511



Back to top


ORGANISMS DEPLETED FOR GROUP:

Total number of orgs: 1
Effective number of orgs (counting one per cluster within 468 clusters): 1

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
ECOL413997 ncbi Escherichia coli B str. REL606 0.000115639450


Organism features enriched in list (features available for 1 out of the 1 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  



Back to top


PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
AST-PWY (arginine degradation II (AST pathway))1201010.6122
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951250.5442
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181320.5334
GLYCOCAT-PWY (glycogen degradation I)2461410.5291
PWY-5918 (heme biosynthesis I)2721430.4835
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2861440.4604
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)149960.4561
ECASYN-PWY (enterobacterial common antigen biosynthesis)1911120.4551
PWY-5755 (4-hydroxybenzoate biosynthesis II (bacteria and fungi))81650.4508
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251230.4481
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3001460.4455
GLUCONSUPER-PWY (D-gluconate degradation)2291230.4381
GLUCARDEG-PWY (D-glucarate degradation I)152940.4294
TYRFUMCAT-PWY (tyrosine degradation I)1841060.4283
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)1761030.4279
PWY-5386 (methylglyoxal degradation I)3051440.4209
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491270.4197
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491270.4197
GALACTITOLCAT-PWY (galactitol degradation)73580.4184
PWY0-981 (taurine degradation IV)106730.4132
PWY-5148 (acyl-CoA hydrolysis)2271180.4059
PWY-1269 (CMP-KDO biosynthesis I)3251470.4027
PWY0-1182 (trehalose degradation II (trehalase))70550.4016
THREONINE-DEG2-PWY (threonine degradation II)2141130.4010
PWY-6134 (tyrosine biosynthesis IV)89640.4002



Back to top


PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG11656   EG11654   EG11388   EG11347   EG11346   EG10841   
G3770.9997850.9999180.9994750.9998970.9998260.99931
EG116560.9997850.9994830.9996840.9996750.999315
EG116540.9995250.999980.9998810.999408
EG113880.9995370.9995630.999877
EG113470.9999060.999391
EG113460.999423
EG10841



Back to top


PAIRWISE BLAST SCORES:

  G377   EG11656   EG11654   EG11388   EG11347   EG11346   EG10841   
G3770.0f0------
EG11656-0.0f0-----
EG11654--0.0f0----
EG11388---0.0f0---
EG11347----0.0f0--
EG11346-----0.0f0-
EG10841------0.0f0



Back to top


PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- FLAGELLAR-MOTOR-COMPLEX (Flagellar Motor Complex) (degree of match pw to cand: 0.231, degree of match cand to pw: 0.429, average score: 0.999)
  Genes in pathway or complex:
   *in cand* 0.9998 0.9994 EG11346 (fliE) EG11346-MONOMER (flagellar basal-body protein FliE)
   *in cand* 0.9998 0.9994 EG11347 (fliF) FLIF-FLAGELLAR-MS-RING (flagellar M-ring protein FliF; basal-body MS(membrane and supramembrane)-ring and collar protein)
             0.9991 0.9989 G365 (flgI) FLGI-FLAGELLAR-P-RING (flagellar P-ring protein FlgI)
             0.9993 0.9990 G363 (flgG) FLGG-FLAGELLAR-MOTOR-ROD-PROTEIN (flagellar basal-body rod protein FlgG)
             0.9991 0.9989 G362 (flgF) FLGF-FLAGELLAR-MOTOR-ROD-PROTEIN (flagellar basal-body rod protein FlgF)
             0.9994 0.9989 G359 (flgC) FLGC-FLAGELLAR-MOTOR-ROD-PROTEIN (flagellar basal-body rod protein FlgC)
             0.9993 0.9988 G358 (flgB) FLGB-FLAGELLAR-MOTOR-ROD-PROTEIN (flagellar basal-body rod protein FlgB)
             0.9955 0.9848 EG10602 (motB) MOTB-FLAGELLAR-MOTOR-STATOR-PROTEIN (MotB protein, enables flagellar motor rotation, linking torque machinery to cell wall)
             0.9978 0.9947 EG10601 (motA) MOTA-FLAGELLAR-MOTOR-STATOR-PROTEIN (MotA protein, proton conductor component of motor; no effect on switching)
             0.9992 0.9989 G364 (flgH) FLGH-FLAGELLAR-L-RING (flagellar L-ring protein FlgH; basal-body outer-membrane L (lipopolysaccharide layer) ring protein)
   *in cand* 0.9998 0.9994 EG11654 (fliG) FLIG-FLAGELLAR-SWITCH-PROTEIN (flagellar motor switch protein FliG)
             0.9995 0.9992 EG10323 (fliM) FLIM-FLAGELLAR-C-RING-SWITCH (flagellar motor switch protein FliM)
             0.9996 0.9992 EG10324 (fliN) FLIN-FLAGELLAR-C-RING-SWITCH (flagellar motor switch protein FliN)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9995 0.9993 EG10841 (fliD) EG10841-MONOMER (flagellar cap protein FliD; filament capping protein; enables filament assembly)
   *in cand* 0.9996 0.9995 EG11388 (fliS) EG11388-MONOMER (flagellar biosynthesis protein FliS)
   *in cand* 0.9997 0.9993 EG11656 (fliH) EG11656-MONOMER (flagellar biosynthesis protein FliH)
   *in cand* 0.9997 0.9993 G377 (fliI) G377-MONOMER (flagellum-specific ATP synthase FliI)

- CPLX0-7451 (Flagellar Export Apparatus) (degree of match pw to cand: 0.222, degree of match cand to pw: 0.286, average score: 0.999)
  Genes in pathway or complex:
             0.9996 0.9993 G378 (fliJ) G378-MONOMER (flagellar biosynthesis protein FliJ)
   *in cand* 0.9997 0.9993 G377 (fliI) G377-MONOMER (flagellum-specific ATP synthase FliI)
   *in cand* 0.9997 0.9993 EG11656 (fliH) EG11656-MONOMER (flagellar biosynthesis protein FliH)
             0.9995 0.9992 EG11977 (fliR) EG11977-MONOMER (flagellar biosynthesis protein FliR)
             0.9994 0.9989 EG11976 (fliQ) EG11976-MONOMER (flagellar biosynthesis protein FliQ)
             0.9995 0.9992 EG11975 (fliP) EG11975-MONOMER (flagellar biosynthesis protein FliP)
             0.9964 0.9951 EG11224 (fliO) EG11224-MONOMER (flagellar biosynthesis protein FliO)
             0.9994 0.9991 G7028 (flhB) G7028-MONOMER (flagellar biosynthesis protein FlhB)
             0.9993 0.9990 G370 (flhA) G370-MONOMER (flagellar biosynthesis protein FlhA)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9995 0.9993 EG10841 (fliD) EG10841-MONOMER (flagellar cap protein FliD; filament capping protein; enables filament assembly)
   *in cand* 0.9998 0.9994 EG11346 (fliE) EG11346-MONOMER (flagellar basal-body protein FliE)
   *in cand* 0.9998 0.9994 EG11347 (fliF) FLIF-FLAGELLAR-MS-RING (flagellar M-ring protein FliF; basal-body MS(membrane and supramembrane)-ring and collar protein)
   *in cand* 0.9996 0.9995 EG11388 (fliS) EG11388-MONOMER (flagellar biosynthesis protein FliS)
   *in cand* 0.9998 0.9994 EG11654 (fliG) FLIG-FLAGELLAR-SWITCH-PROTEIN (flagellar motor switch protein FliG)

- CPLX0-7452 (Flagellum) (degree of match pw to cand: 0.222, degree of match cand to pw: 0.857, average score: 0.998)
  Genes in pathway or complex:
   *in cand* 0.9995 0.9993 EG10841 (fliD) EG10841-MONOMER (flagellar cap protein FliD; filament capping protein; enables filament assembly)
             0.9995 0.9992 EG10321 (fliC) EG10321-MONOMER (flagellar biosynthesis; flagellin, filament structural protein)
             0.9993 0.9990 EG11545 (flgL) EG11545-MONOMER (flagellar biosynthesis; hook-filament junction protein)
             0.9993 0.9990 EG11967 (flgK) EG11967-MONOMER (flagellar biosynthesis, hook-filament junction protein 1)
             0.9991 0.9985 G361 (flgE) G361-MONOMER (flagellar hook protein FlgE)
             0.9993 0.9990 G370 (flhA) G370-MONOMER (flagellar biosynthesis protein FlhA)
             0.9994 0.9991 G7028 (flhB) G7028-MONOMER (flagellar biosynthesis protein FlhB)
             0.9964 0.9951 EG11224 (fliO) EG11224-MONOMER (flagellar biosynthesis protein FliO)
             0.9995 0.9992 EG11975 (fliP) EG11975-MONOMER (flagellar biosynthesis protein FliP)
             0.9994 0.9989 EG11976 (fliQ) EG11976-MONOMER (flagellar biosynthesis protein FliQ)
             0.9995 0.9992 EG11977 (fliR) EG11977-MONOMER (flagellar biosynthesis protein FliR)
   *in cand* 0.9997 0.9993 EG11656 (fliH) EG11656-MONOMER (flagellar biosynthesis protein FliH)
   *in cand* 0.9997 0.9993 G377 (fliI) G377-MONOMER (flagellum-specific ATP synthase FliI)
             0.9996 0.9993 G378 (fliJ) G378-MONOMER (flagellar biosynthesis protein FliJ)
             0.9996 0.9992 EG10324 (fliN) FLIN-FLAGELLAR-C-RING-SWITCH (flagellar motor switch protein FliN)
             0.9995 0.9992 EG10323 (fliM) FLIM-FLAGELLAR-C-RING-SWITCH (flagellar motor switch protein FliM)
   *in cand* 0.9998 0.9994 EG11654 (fliG) FLIG-FLAGELLAR-SWITCH-PROTEIN (flagellar motor switch protein FliG)
             0.9992 0.9989 G364 (flgH) FLGH-FLAGELLAR-L-RING (flagellar L-ring protein FlgH; basal-body outer-membrane L (lipopolysaccharide layer) ring protein)
             0.9978 0.9947 EG10601 (motA) MOTA-FLAGELLAR-MOTOR-STATOR-PROTEIN (MotA protein, proton conductor component of motor; no effect on switching)
             0.9955 0.9848 EG10602 (motB) MOTB-FLAGELLAR-MOTOR-STATOR-PROTEIN (MotB protein, enables flagellar motor rotation, linking torque machinery to cell wall)
             0.9993 0.9988 G358 (flgB) FLGB-FLAGELLAR-MOTOR-ROD-PROTEIN (flagellar basal-body rod protein FlgB)
             0.9994 0.9989 G359 (flgC) FLGC-FLAGELLAR-MOTOR-ROD-PROTEIN (flagellar basal-body rod protein FlgC)
             0.9991 0.9989 G362 (flgF) FLGF-FLAGELLAR-MOTOR-ROD-PROTEIN (flagellar basal-body rod protein FlgF)
             0.9993 0.9990 G363 (flgG) FLGG-FLAGELLAR-MOTOR-ROD-PROTEIN (flagellar basal-body rod protein FlgG)
             0.9991 0.9989 G365 (flgI) FLGI-FLAGELLAR-P-RING (flagellar P-ring protein FlgI)
   *in cand* 0.9998 0.9994 EG11347 (fliF) FLIF-FLAGELLAR-MS-RING (flagellar M-ring protein FliF; basal-body MS(membrane and supramembrane)-ring and collar protein)
   *in cand* 0.9998 0.9994 EG11346 (fliE) EG11346-MONOMER (flagellar basal-body protein FliE)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9996 0.9995 EG11388 (fliS) EG11388-MONOMER (flagellar biosynthesis protein FliS)



Back to top


GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG11346 EG11347 EG11654 EG11656 G377 (centered at EG11654)
EG10841 EG11388 (centered at EG11388)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G377   EG11656   EG11654   EG11388   EG11347   EG11346   EG10841   
292/623133/623295/623227/623299/623204/623221/623
AAEO224324:0:Tyes659-0-361--
AAVE397945:0:Tyes0-26347
ABAC204669:0:Tyes0-2-341298
ABAU360910:0:Tyes01293410
ABUT367737:0:Tyes1724-174611747-0
ACAU438753:0:Tyes19-13-0--
ACEL351607:0:Tyes9-7-6-0
ACRY349163:8:Tyes--0-1--
ADEH290397:0:Tyes50-52-53540
AEHR187272:0:Tyes9871650
AHYD196024:0:Tyes43233510334
AMET293826:0:Tyes2068-11760-175
AORE350688:0:Tyes4-2108210-
ASAL382245:5:Tyes9529519502309482218
ASP232721:2:Tyes0-26347
ASP62928:0:Tyes13121111070
BABO262698:0:Tno----0--
BAFZ390236:2:Fyes0-2-3--
BAMB339670:3:Tno3032303130303027302930280
BAMB398577:3:Tno2851285028492846284828470
BAMY326423:0:Tyes4-21645101646
BANT260799:0:Tno--1-0--
BANT261594:2:Tno--0----
BANT568206:2:Tyes--0-2--
BANT592021:2:Tno--2-0--
BAPH198804:0:Tyes432-10-
BAPH372461:0:Tyes3-1-0--
BBAC264462:0:Tyes2585-25871258825890
BBAC360095:0:Tyes15-22-0--
BBRO257310:0:Tyes01293410
BBUR224326:21:Fno0-2-3--
BCAN483179:0:Tno----0--
BCEN331271:2:Tno543021429
BCEN331272:3:Tyes2821282028192816281828170
BCER226900:1:Tyes--1-0--
BCER288681:0:Tno--1-0--
BCER315749:1:Tyes--1-0--
BCER405917:1:Tyes--1-0--
BCER572264:1:Tno--1-0--
BCLA66692:0:Tyes0-281934820
BGAR290434:2:Fyes0-2-3--
BHAL272558:0:Tyes0-2117334-
BHER314723:0:Fyes0-2-3--
BJAP224911:0:Fyes0-4827-4826-1498
BLIC279010:0:Tyes4-21869101870
BMAL243160:1:Tno3683693703733713720
BMAL320388:1:Tno012534491
BMAL320389:1:Tyes3002992982952972960
BMEL224914:0:Tno----0--
BMEL359391:0:Tno----0--
BOVI236:0:Tyes----0--
BPAR257311:0:Tno0128-39
BPER257313:0:Tyes0128349
BPET94624:0:Tyes01293410
BPSE272560:1:Tyes0125343111
BPSE320372:1:Tno3353363373403383390
BPSE320373:1:Tno0125343522
BPUM315750:0:Tyes4-21666101667
BSP107806:2:Tyes432-10-
BSP36773:0:Tyes------0
BSP36773:2:Tyes543021-
BSP376:0:Tyes0-4191-4190--
BSUB:0:Tyes4-22003102004
BSUI204722:0:Tyes----0--
BSUI470137:0:Tno0------
BTHA271848:1:Tno0125342938
BTHU281309:1:Tno--1-0--
BTHU412694:1:Tno--1-0--
BTUR314724:0:Fyes0-2-3--
BVIE269482:7:Tyes2928292729262923292529240
BWEI315730:4:Tyes--1-0--
BXEN266265:1:Tyes-----0-
CABO218497:0:Tyes0------
CACE272562:1:Tyes0-24634-
CAULO:0:Tyes2173-1-0--
CBEI290402:0:Tyes0-22734-
CBOT36826:1:Tno0-27534-
CBOT441770:0:Tyes0-27334-
CBOT441771:0:Tno0-27534-
CBOT441772:1:Tno0-253-3-
CBOT498213:1:Tno0-2643463
CBOT508765:1:Tyes29-27026--
CBOT515621:2:Tyes0-27034-
CBOT536232:0:Tno0-27434-
CCAV227941:1:Tyes0------
CCON360104:2:Tyes0-507780506-781
CCUR360105:0:Tyes0-15219991522-998
CDES477974:0:Tyes012223421
CDIF272563:1:Tyes16-1401312-
CFEL264202:1:Tyes0------
CFET360106:0:Tyes1558-1690170-1
CHYD246194:0:Tyes11-91870
CJAP155077:0:Tyes15141301211210
CJEJ192222:0:Tyes0-104338103-337
CJEJ195099:0:Tno0-171456170-455
CJEJ354242:2:Tyes0-113332112-331
CJEJ360109:0:Tyes0-134411041345-1105
CJEJ407148:0:Tno0-112337111-336
CKLU431943:1:Tyes4-295510-
CMUR243161:1:Tyes0------
CNOV386415:0:Tyes27-2502423-
CPHY357809:0:Tyes2381-23831-23850
CPNE115711:1:Tyes0------
CPNE115713:0:Tno0------
CPNE138677:0:Tno0------
CPNE182082:0:Tno0------
CPRO264201:0:Fyes0------
CPSY167879:0:Tyes13121141090
CSAL290398:0:Tyes432771078
CSP501479:7:Fyes0---58--
CSP501479:8:Fyes--0----
CSP78:2:Tyes11-1-0--
CTET212717:0:Tyes0-2443--
CTRA471472:0:Tyes0---802--
CTRA471473:0:Tno0---802--
CVIO243365:0:Tyes8437018446978458460
DARO159087:0:Tyes012113612
DDES207559:0:Tyes0-278034781
DHAF138119:0:Tyes0-2143-15
DPSY177439:2:Tyes1026-10240102310221
DRED349161:0:Tyes0121034-
DSHI398580:5:Tyes1410-0-1428--
DVUL882:1:Tyes0-25493--
ECAR218491:0:Tyes0126347
ECOL199310:0:Tno191816115140
ECOL316407:0:Tno151413112110
ECOL331111:6:Tno141312111100
ECOL362663:0:Tno171615114130
ECOL364106:1:Tno161514113120
ECOL405955:2:Tyes151413112110
ECOL409438:6:Tyes171615114130
ECOL439855:4:Tno012133414
ECOL469008:0:Tno012123413
ECOL481805:0:Tno012113412
ECOL585034:0:Tno1211101980
ECOL585035:0:Tno161514113120
ECOL585055:0:Tno151413112110
ECOL585056:2:Tno151413112110
ECOL585057:0:Tno01-134514
ECOL585397:0:Tno191817116150
ECOL83334:0:Tno171615114130
ECOLI:0:Tno141312111100
ECOO157:0:Tno171615114130
EFER585054:1:Tyes74674574407437411
ESP42895:1:Tyes9871650
FNOD381764:0:Tyes359-43642343713350
GKAU235909:1:Tyes4-21933101934
GMET269799:1:Tyes2671-26731267426750
GOXY290633:5:Tyes1260-0-1--
GSUL243231:0:Tyes4-22616102617
GTHE420246:1:Tyes4-21966101952
GURA351605:0:Tyes117-11901201211
HACI382638:1:Tyes0-796522797-523
HARS204773:0:Tyes10981750
HCHE349521:0:Tyes10951096109773110980732
HHAL349124:0:Tyes0128349
HHEP235279:0:Tyes0-4823149-230
HMOD498761:0:Tyes1493-1491014901489896
HNEP81032:0:Tyes--1137-0--
HPY:0:Tno1083-14030-402
HPYL357544:1:Tyes1025-13950-394
HPYL85963:0:Tno982-13600-359
ILOI283942:0:Tyes70-72073741
JSP290400:1:Tyes1557-0-1538--
JSP375286:0:Tyes01293410
KRAD266940:2:Fyes0-2253--
LBIF355278:2:Tyes358-2708848153-0
LBIF456481:2:Tno365-2801873155-0
LBOR355276:1:Tyes989-01391992--
LBOR355277:1:Tno918-01156915--
LCHO395495:0:Tyes8761540
LINN272626:1:Tno--7-6-0
LINT189518:1:Tyes2590-022742589--
LINT267671:1:Tno1349-016121350--
LINT363253:3:Tyes642-6440645--
LMON169963:0:Tno--7-6-0
LMON265669:0:Tyes--7-6-0
LPNE272624:0:Tno419-42104224231
LPNE297245:1:Fno422-42404254261
LPNE297246:1:Fyes427-42904304311
LPNE400673:0:Tno434-43604374381
LSPH444177:1:Tyes369-3670366365-
LWEL386043:0:Tyes--7-6-0
LXYL281090:0:Tyes8-605--
MAQU351348:2:Tyes01258934590
MEXT419610:0:Tyes0-3276-3277--
MFLA265072:0:Tyes0128349
MLOT266835:2:Tyes2759-0-20--
MMAG342108:0:Tyes126-0-1--
MMAR394221:0:Tyes0-15-161265-
MPET420662:1:Tyes4322294102295
MSP266779:3:Tyes0-200-180--
MSP400668:0:Tyes01212134122
MSP409:2:Tyes0-1154-1155--
MTHE264732:0:Tyes9871650
MXAN246197:0:Tyes0------
NEUR228410:0:Tyes50049949814974940
NEUT335283:2:Tyes01220036201
NHAM323097:2:Tyes2561-0-1--
NMUL323848:3:Tyes9871650
NOCE323261:1:Tyes0128349
NSP35761:1:Tyes0-283-9
NSP387092:0:Tyes20-03718-36
NWIN323098:0:Tyes0-75-76--
OANT439375:4:Tyes14-21-0--
OCAR504832:0:Tyes1895-2-0--
OIHE221109:0:Tyes4-295810959
PAER208963:0:Tyes01293410
PAER208964:0:Tno10981760
PATL342610:0:Tyes012383439
PCAR338963:0:Tyes77-79080811
PENT384676:0:Tyes01293410
PFLU205922:0:Tyes10981760
PFLU216595:1:Tyes01293410
PFLU220664:0:Tyes10981760
PHAL326442:1:Tyes111092870
PING357804:0:Tyes0122334-
PLUM243265:0:Fyes0127348
PMEN399739:0:Tyes2669267026712678267226730
PMOB403833:0:Tyes1012-10101125100913200
PPEN278197:0:Tyes------0
PPRO298386:2:Tyes904903902210900893
PPUT160488:0:Tno01293410
PPUT351746:0:Tyes10981760
PPUT76869:0:Tno01293410
PSP117:0:Tyes5086-1299-2312-0
PSTU379731:0:Tyes116711681169454117011710
PSYR205918:0:Tyes0-293410
PSYR223283:2:Tyes10981760
PTHE370438:0:Tyes023104511
RDEN375451:4:Tyes0-2159-16--
RETL347834:5:Tyes10-5-0--
REUT264198:2:Tyes9871650
REUT381666:1:Tyes9871650
RFER338969:1:Tyes432841083
RLEG216596:6:Tyes10-5-0--
RMET266264:1:Tyes987064-
RMET266264:2:Tyes------0
RPAL258594:0:Tyes992-626-625-0
RPAL316055:0:Tyes3457-185-184-0
RPAL316056:0:Tyes3361-75-742240
RPAL316057:0:Tyes0-173-174--
RPAL316058:0:Tyes3166-516-515-0
RPOM246200:1:Tyes0-2079-16--
RRUB269796:1:Tyes0-18-19-2005
RSOL267608:0:Tyes10981760
RSPH272943:4:Tyes4-2-1019
RSPH349101:2:Tno4-2-1019
RSPH349102:5:Tyes4-2-1019
SACI56780:0:Tyes4-239810399
SAGA208435:0:Tno------0
SALA317655:1:Tyes11-13-14150
SBAL399599:3:Tyes01283410
SBAL402882:1:Tno01283410
SBOY300268:1:Tyes---100111
SDEG203122:0:Tyes012123413
SDEN318161:0:Tyes1297129612951289368501287
SDYS300267:0:Tyes0------
SDYS300267:1:Tyes---0--1
SENT209261:0:Tno012113412
SENT220341:0:Tno1211101980
SENT295319:0:Tno012113412
SENT321314:2:Tno13121111080
SENT454169:2:Tno13121111080
SFLE198214:0:Tyes1615141-130
SFLE373384:0:Tno1413121-110
SGLO343509:3:Tyes0126347
SHAL458817:0:Tyes10982289060
SHIGELLA:0:Tno1514131-120
SLAC55218:1:Fyes0-1567-384--
SLOI323850:0:Tyes10982760
SMED366394:3:Tyes11-5-0--
SMEL266834:2:Tyes11-5-0--
SONE211586:1:Tyes01283410
SPEA398579:0:Tno1331133013291323013271321
SPRO399741:1:Tyes9871650
SRUB309807:1:Tyes0-2-3-12
SSED425104:0:Tyes3096309730983104031003106
SSON300269:1:Tyes191817116150
SSP292414:2:Tyes1989-0-1970--
SSP644076:5:Fyes--0----
SSP644076:6:Fyes19---0--
SSP94122:1:Tyes10982760
STHE292459:0:Tyes24-26027281
STYP99287:1:Tyes1211101980
SWOL335541:0:Tyes586--0584583-
TCRU317025:0:Tyes0-293410
TDEN243275:0:Tyes1089-108701086--
TDEN292415:0:Tyes5170515507514513506
TDEN326298:0:Tyes1918-2841283-0
TLET416591:0:Tyes1847-184519451844090
TMAR243274:0:Tyes0-294131120886
TPAL243276:0:Tyes3-15370-466
TPET390874:0:Tno3-18900736939
TPSE340099:0:Tyes0-249934500
TROS309801:0:Tyes428-43014314320
TSP1755:0:Tyes1202-12041120512060
TSP28240:0:Tyes2-19280756980
TTEN273068:0:Tyes894-89618978980
TTUR377629:0:Tyes141312211100
VCHO:0:Tyes01283410
VCHO345073:1:Tno01283410
VEIS391735:1:Tyes6540323258
VFIS312309:2:Tyes01293411
VPAR223926:0:Tyes----0-14
VPAR223926:1:Tyes0128-4-
VVUL196600:2:Tyes01293411
VVUL216895:1:Tno10982760
WSUC273121:0:Tyes1883-168611687-0
XAXO190486:0:Tyes0-2223423
XCAM190485:0:Tyes012163417
XCAM314565:0:Tno17-15114130
XCAM316273:0:Tno012263427
XCAM487884:0:Tno012163418
XORY291331:0:Tno22-20119180
XORY342109:0:Tyes23-21120190
XORY360094:0:Tno44-40238360
YENT393305:1:Tyes13121111090
YPES187410:5:Tno13121111090
YPES214092:3:Tno012113412
YPES349746:2:Tno012103411
YPES360102:3:Tyes012133414
YPES377628:2:Tno141312111100
YPES386656:2:Tno1211101980
YPSE273123:2:Tno012113412
YPSE349747:2:Tno10981760
ZMOB264203:0:Tyes--3-1019



Back to top