CANDIDATE ID: 106

CANDIDATE ID: 106

NUMBER OF GENES: 7
AVERAGE SCORE:    9.9967476e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    2.8571429e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7304 (hyfG) (b2487)
   Products of gene:
     - MONOMER0-150 (hydrogenase 4, large subunit)
     - CPLX0-250 (hydrogenase 4)
       Reactions:
        2 H+ + 2 e-  ->  H2

- G7303 (hyfF) (b2486)
   Products of gene:
     - MONOMER0-143 (hydrogenase 4, component F)
     - CPLX0-250 (hydrogenase 4)
       Reactions:
        2 H+ + 2 e-  ->  H2

- G7301 (hyfD) (b2484)
   Products of gene:
     - MONOMER0-141 (hydrogenase 4, component D)
     - CPLX0-250 (hydrogenase 4)
       Reactions:
        2 H+ + 2 e-  ->  H2

- EG11282 (hyfB) (b2482)
   Products of gene:
     - MONOMER0-153 (hydrogenase 4, component B)
     - CPLX0-250 (hydrogenase 4)
       Reactions:
        2 H+ + 2 e-  ->  H2

- EG10478 (hycE) (b2721)
   Products of gene:
     - HYCELARGE-MONOMER (hydrogenase 3, large subunit)
     - HYDROG3-CPLX (hydrogenase 3)
       Reactions:
        2 H+ + 2 e-  ->  H2
     - FHLMULTI-CPLX (formate hydrogenlyase complex)
       Reactions:
        formate + H+  ->  CO2 + H2
         In pathways
         ANARESP1-PWY (respiration (anaerobic))
         FERMENTATION-PWY (mixed acid fermentation)

- EG10477 (hycD) (b2722)
   Products of gene:
     - HYCD-MONOMER (hydrogenase 3, membrane subunit)
     - HYDROG3-CPLX (hydrogenase 3)
       Reactions:
        2 H+ + 2 e-  ->  H2
     - FHLMULTI-CPLX (formate hydrogenlyase complex)
       Reactions:
        formate + H+  ->  CO2 + H2
         In pathways
         ANARESP1-PWY (respiration (anaerobic))
         FERMENTATION-PWY (mixed acid fermentation)

- EG10476 (hycC) (b2723)
   Products of gene:
     - HYCC-MONOMER (hydrogenase 3, membrane subunit)
     - HYDROG3-CPLX (hydrogenase 3)
       Reactions:
        2 H+ + 2 e-  ->  H2
     - FHLMULTI-CPLX (formate hydrogenlyase complex)
       Reactions:
        formate + H+  ->  CO2 + H2
         In pathways
         ANARESP1-PWY (respiration (anaerobic))
         FERMENTATION-PWY (mixed acid fermentation)



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ORGANISMS CONTAINING AT LEAST 6 GENES FROM THE GROUP:

Total number of orgs: 148
Effective number of orgs (counting one per cluster within 468 clusters): 103

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317586
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329536
YPES386656 ncbi Yersinia pestis Pestoides F6
YPES377628 ncbi Yersinia pestis Nepal5166
YPES360102 ncbi Yersinia pestis Antiqua6
YPES349746 ncbi Yersinia pestis Angola6
YPES214092 ncbi Yersinia pestis CO926
YPES187410 ncbi Yersinia pestis KIM 106
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80817
XAUT78245 ncbi Xanthobacter autotrophicus Py26
WSUC273121 ncbi Wolinella succinogenes DSM 17407
UMET351160 ncbi uncultured methanogenic archaeon RC-I6
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB47
TPEN368408 ncbi Thermofilum pendens Hrk 57
TKOD69014 ncbi Thermococcus kodakarensis KOD17
TCRU317025 ncbi Thiomicrospira crunogena XCL-26
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT26
STRO369723 ncbi Salinispora tropica CNB-4406
SSP387093 ncbi Sulfurovum sp. NBC37-17
SSON300269 ncbi Shigella sonnei Ss0467
SPRO399741 ncbi Serratia proteamaculans 5687
SMEL266834 ncbi Sinorhizobium meliloti 10216
SMED366394 ncbi Sinorhizobium medicae WSM4197
SHIGELLA ncbi Shigella flexneri 2a str. 2457T7
SFLE373384 ncbi Shigella flexneri 5 str. 84017
SFLE198214 ncbi Shigella flexneri 2a str. 3017
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23386
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4766
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B676
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91506
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT186
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty26
SDYS300267 ncbi Shigella dysenteriae Sd1977
SBOY300268 ncbi Shigella boydii Sb2277
SARE391037 ncbi Salinispora arenicola CNS-2056
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99416
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170296
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.16
RSP357808 ncbi Roseiflexus sp. RS-16
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111707
RPAL316058 ncbi Rhodopseudomonas palustris HaA27
RPAL316057 ncbi Rhodopseudomonas palustris BisB57
RPAL316056 ncbi Rhodopseudomonas palustris BisB187
RPAL316055 ncbi Rhodopseudomonas palustris BisA537
RMET266264 ncbi Ralstonia metallidurans CH346
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38417
RFER338969 ncbi Rhodoferax ferrireducens T1186
REUT381666 ncbi Ralstonia eutropha H167
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30006
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a6
PSP296591 ncbi Polaromonas sp. JS6666
PPUT76869 ncbi Pseudomonas putida GB-17
PPUT351746 ncbi Pseudomonas putida F16
PPUT160488 ncbi Pseudomonas putida KT24406
PMEN399739 ncbi Pseudomonas mendocina ymp7
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13756
PLUT319225 ncbi Chlorobium luteolum DSM 2736
PHOR70601 ncbi Pyrococcus horikoshii OT36
PFUR186497 ncbi Pyrococcus furiosus DSM 36386
PFLU220664 ncbi Pseudomonas fluorescens Pf-56
PENT384676 ncbi Pseudomonas entomophila L486
PARC259536 ncbi Psychrobacter arcticus 273-46
PAER208964 ncbi Pseudomonas aeruginosa PAO17
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA147
PABY272844 ncbi Pyrococcus abyssi GE57
NSP387092 ncbi Nitratiruptor sp. SB155-27
NSP35761 Nocardioides sp.7
NOCE323261 ncbi Nitrosococcus oceani ATCC 197077
NMUL323848 ncbi Nitrosospira multiformis ATCC 251967
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra7
MTUB336982 ncbi Mycobacterium tuberculosis F117
MTHE264732 ncbi Moorella thermoacetica ATCC 390737
MTBRV ncbi Mycobacterium tuberculosis H37Rv7
MTBCDC ncbi Mycobacterium tuberculosis CDC15517
MMAZ192952 ncbi Methanosarcina mazei Go17
MMAG342108 ncbi Magnetospirillum magneticum AMB-16
MLAB410358 ncbi Methanocorpusculum labreanum Z6
MHUN323259 ncbi Methanospirillum hungatei JF-17
MCAP243233 ncbi Methylococcus capsulatus Bath7
MBUR259564 ncbi Methanococcoides burtonii DSM 62427
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P27
MBOV233413 ncbi Mycobacterium bovis AF2122/977
MAVI243243 ncbi Mycobacterium avium 1047
MAEO419665 ncbi Methanococcus aeolicus Nankai-36
MACE188937 ncbi Methanosarcina acetivorans C2A7
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785786
GURA351605 ncbi Geobacter uraniireducens Rf47
GSUL243231 ncbi Geobacter sulfurreducens PCA7
GMET269799 ncbi Geobacter metallireducens GS-157
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S856
FSP1855 Frankia sp. EAN1pec6
ESP42895 Enterobacter sp.6
EFER585054 ncbi Escherichia fergusonii ATCC 354697
ECOO157 ncbi Escherichia coli O157:H7 EDL9337
ECOL83334 Escherichia coli O157:H77
ECOL585397 ncbi Escherichia coli ED1a6
ECOL585057 ncbi Escherichia coli IAI397
ECOL585056 ncbi Escherichia coli UMN0267
ECOL585055 ncbi Escherichia coli 559897
ECOL585035 ncbi Escherichia coli S886
ECOL585034 ncbi Escherichia coli IAI17
ECOL481805 ncbi Escherichia coli ATCC 87397
ECOL469008 ncbi Escherichia coli BL21(DE3)7
ECOL439855 ncbi Escherichia coli SMS-3-57
ECOL413997 ncbi Escherichia coli B str. REL6067
ECOL409438 ncbi Escherichia coli SE117
ECOL405955 ncbi Escherichia coli APEC O16
ECOL364106 ncbi Escherichia coli UTI896
ECOL362663 ncbi Escherichia coli 5366
ECOL331111 ncbi Escherichia coli E24377A6
ECOL316407 ncbi Escherichia coli K-12 substr. W31107
ECOL199310 ncbi Escherichia coli CFT0736
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10437
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough6
DSP255470 ncbi Dehalococcoides sp. CBDB17
DSP216389 ncbi Dehalococcoides sp. BAV17
DPSY177439 ncbi Desulfotalea psychrophila LSv546
DHAF138119 ncbi Desulfitobacterium hafniense Y517
DETH243164 ncbi Dehalococcoides ethenogenes 1957
CTEP194439 ncbi Chlorobium tepidum TLS6
CSAL290398 ncbi Chromohalobacter salexigens DSM 30436
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE256
CMET456442 ncbi Candidatus Methanoregula boonei 6A86
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF86
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29017
CFET360106 ncbi Campylobacter fetus fetus 82-406
CCUR360105 ncbi Campylobacter curvus 525.927
CCON360104 ncbi Campylobacter concisus 138267
CCHL340177 ncbi Chlorobium chlorochromatii CaD36
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80526
BXEN266265 ncbi Burkholderia xenovorans LB4006
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54826
BTHA271848 ncbi Burkholderia thailandensis E2646
BPSE320373 ncbi Burkholderia pseudomallei 6686
BPSE320372 ncbi Burkholderia pseudomallei 1710b6
BPSE272560 ncbi Burkholderia pseudomallei K962436
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1106
BFRA295405 ncbi Bacteroides fragilis YCH467
BFRA272559 ncbi Bacteroides fragilis NCTC 93437
ASP76114 ncbi Aromatoleum aromaticum EbN17
ASP62977 ncbi Acinetobacter sp. ADP16
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4497
AHYD196024 Aeromonas hydrophila dhakensis7
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232707
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C7
ACRY349163 ncbi Acidiphilium cryptum JF-57
ACEL351607 ncbi Acidothermus cellulolyticus 11B7
ACAU438753 ncbi Azorhizobium caulinodans ORS 5717


Names of the homologs of the genes in the group in each of these orgs
  G7304   G7303   G7301   EG11282   EG10478   EG10477   EG10476   
YPSE349747 YPSIP31758_1456YPSIP31758_1464YPSIP31758_1464YPSIP31758_1456YPSIP31758_1460YPSIP31758_1464
YPSE273123 YPTB2585YPTB2577YPTB2577YPTB2585YPTB2581YPTB2577
YPES386656 YPDSF_1963YPDSF_1955YPDSF_1955YPDSF_1963YPDSF_1959YPDSF_1955
YPES377628 YPN_2148YPN_2140YPN_2140YPN_2148YPN_2144YPN_2140
YPES360102 YPA_2045YPA_2037YPA_2037YPA_2045YPA_2041YPA_2037
YPES349746 YPANGOLA_A1814YPANGOLA_A1806YPANGOLA_A1806YPANGOLA_A1814YPANGOLA_A1810YPANGOLA_A1806
YPES214092 YPO2553YPO2545YPO2545YPO2553YPO2549YPO2545
YPES187410 Y1632Y1640Y1640Y1632Y1636Y1640
YENT393305 YE2804YE2803YE2801YE2799YE2804YE2800YE2799
XAUT78245 XAUT_0170XAUT_0169XAUT_0166XAUT_0170XAUT_0167XAUT_0166
WSUC273121 WS1838WS1839WS0485WS1842WS1838WS1841WS1842
UMET351160 RCIX2383RCIX2384RCIX2387RCIX2383RCIX2386RCIX2387
TTEN273068 TTE1700TTE1702TTE1701TTE1706TTE1700TTE1705TTE1706
TPEN368408 TPEN_0183TPEN_0185TPEN_0180TPEN_0188TPEN_0183TPEN_0187TPEN_0188
TKOD69014 TK2091TK1220TK2087TK2087TK2091TK2092TK2087
TCRU317025 TCR_0820TCR_0063TCR_0063TCR_0829TCR_0824TCR_0063
STYP99287 STM2849STM2318STM2851STM2849STM2850STM2851
STRO369723 STROP_4286STROP_4054STROP_0403STROP_0772STROP_4286STROP_4054
SSP387093 SUN_0263SUN_0259SUN_0851SUN_0259SUN_0846SUN_0260SUN_0259
SSON300269 SSO_2868SSO_2567SSO_2565SSO_2563SSO_2868SSO_2869SSO_2870
SPRO399741 SPRO_2430SPRO_2432SPRO_3298SPRO_2432SPRO_2430SPRO_2431SPRO_2432
SMEL266834 SMA1529SMC03179SMC03179SMA1541SMA1529SMA1536
SMED366394 SMED_3620SMED_2806SMED_2806SMED_2806SMED_3620SMED_3614SMED_3625
SHIGELLA HYCEHYFFHYFDHYCCHYCEHYCDHYCC
SFLE373384 SFV_2782SFV_2531SFV_2529SFV_2780SFV_2782SFV_2781SFV_2780
SFLE198214 AAN44229.1AAN44031.1AAN44029.1AAN44231.1AAN44229.1AAN44230.1AAN44231.1
SERY405948 SACE_6899SACE_6891SACE_6891SACE_6899SACE_6895SACE_6542
SENT454169 SEHA_C3036SEHA_C2557SEHA_C3038SEHA_C3036SEHA_C3037SEHA_C3038
SENT321314 SCH_2782SCH_2318SCH_2784SCH_2782SCH_2783SCH_2784
SENT295319 SPA2707SPA0546SPA2709SPA2707SPA2708SPA2709
SENT220341 STY2971STY2548STY2973STY2971STY2972STY2973
SENT209261 T2751T0546T2753T2751T2752T2753
SDYS300267 SDY_2918SDY_2675SDY_2474SDY_2671SDY_2918SDY_2919SDY_2671
SBOY300268 SBO_2797SBO_2507SBO_2311SBO_2795SBO_2797SBO_2796SBO_2795
SARE391037 SARE_4460SARE_4452SARE_4452SARE_0714SARE_4721SARE_4452
RXYL266117 RXYL_1631RXYL_1627RXYL_1626RXYL_1631RXYL_1630RXYL_1627
RSPH349101 RSPH17029_1738RSPH17029_3449RSPH17029_3449RSPH17029_1738RSPH17029_1742RSPH17029_3449
RSPH272943 RSP_0102RSP_3715RSP_3715RSP_0102RSP_0106RSP_3715
RSP357808 ROSERS_3675ROSERS_2232ROSERS_2102ROSERS_3675ROSERS_2236ROSERS_2232
RRUB269796 RRU_A0316RRU_A0320RRU_A0314RRU_A0315RRU_A0316RRU_A0317RRU_A0315
RPAL316058 RPB_1264RPB_1263RPB_0148RPB_1260RPB_1264RPB_1261RPB_1260
RPAL316057 RPD_3851RPD_3852RPD_0676RPD_3855RPD_3851RPD_3854RPD_3855
RPAL316056 RPC_4570RPC_4571RPC_4573RPC_4575RPC_4570RPC_4574RPC_4575
RPAL316055 RPE_0956RPE_0955RPE_1720RPE_0952RPE_1712RPE_0953RPE_0952
RMET266264 RMET_4667RMET_4668RMET_4671RMET_4667RMET_4670RMET_4671
RLEG216596 PRL110293PRL110294RL1372PRL110297PRL110293PRL110296PRL110297
RFER338969 RFER_3288RFER_3289RFER_3292RFER_3288RFER_3291RFER_3292
REUT381666 H16_A2200H16_A2199H16_A1881H16_A2196H16_A2200H16_A2197H16_A2196
PSYR223283 PSPTO_3367PSPTO_3471PSPTO_3471PSPTO_3471PSPTO_3367PSPTO_3371
PSYR205918 PSYR_3199PSYR_3252PSYR_3252PSYR_3252PSYR_3199PSYR_3203
PSP296591 BPRO_0920BPRO_0919BPRO_0916BPRO_0920BPRO_0917BPRO_0916
PPUT76869 PPUTGB1_3693PPUTGB1_1853PPUTGB1_1853PPUTGB1_1853PPUTGB1_3693PPUTGB1_3697PPUTGB1_1853
PPUT351746 PPUT_1744PPUT_3510PPUT_3510PPUT_3510PPUT_1744PPUT_1740
PPUT160488 PP_4121PP_2230PP_2230PP_2230PP_4121PP_4125
PMEN399739 PMEN_2414PMEN_1441PMEN_1433PMEN_1433PMEN_2414PMEN_2418PMEN_1441
PMAR167539 PRO_0197PRO_0172PRO_0172PRO_0172PRO_0197PRO_0184
PLUT319225 PLUT_0746PLUT_0751PLUT_0751PLUT_0751PLUT_0746PLUT_0747
PHOR70601 PH1437PH1452PH1431PH1437PH1439PH1431
PFUR186497 PF1434PF1430PF1430PF1434PF1435PF1430
PFLU220664 PFL_3899PFL_2611PFL_2611PFL_3899PFL_3903PFL_2611
PENT384676 PSEEN3486PSEEN3533PSEEN3533PSEEN3533PSEEN3486PSEEN3490
PARC259536 PSYC_0586PSYC_0594PSYC_0594PSYC_0594PSYC_0586PSYC_0590
PAER208964 PA2639PA1054PA2647PA1054PA2639PA2643PA1054
PAER208963 PA14_29990PA14_50730PA14_29880PA14_50730PA14_29990PA14_29930PA14_50730
PABY272844 PAB1394PAB1888PAB1391PAB1392PAB1394PAB1393PAB1392
NSP387092 NIS_0715NIS_0716NIS_0300NIS_0719NIS_0715NIS_0718NIS_0719
NSP35761 NOCA_4465NOCA_4466NOCA_0531NOCA_4469NOCA_4465NOCA_4468NOCA_4469
NOCE323261 NOC_1125NOC_1281NOC_0478NOC_1280NOC_1125NOC_1121NOC_2554
NMUL323848 NMUL_A1015NMUL_A1591NMUL_A1591NMUL_A1023NMUL_A1015NMUL_A1019NMUL_A1023
MTUB419947 MRA_0091MRA_0090MRA_3189MRA_0087MRA_0091MRA_0088MRA_0087
MTUB336982 TBFG_10088TBFG_10087TBFG_13177TBFG_10084TBFG_10088TBFG_10085TBFG_10084
MTHE264732 MOTH_2186MOTH_2188MOTH_2187MOTH_2191MOTH_2186MOTH_2190MOTH_2191
MTBRV RV0087RV0086RV3156RV0083RV0087RV0084RV0083
MTBCDC MT3236MT0093MT3244MT0090MT3236MT0091MT0090
MMAZ192952 MM2324MM1062MM2482MM1059MM1063MM1060MM1059
MMAG342108 AMB0207AMB0208AMB0211AMB0207AMB0210AMB0211
MLAB410358 MLAB_0959MLAB_0955MLAB_0955MLAB_0959MLAB_0960MLAB_0955
MHUN323259 MHUN_2590MHUN_1819MHUN_1741MHUN_1822MHUN_1745MHUN_1821MHUN_1822
MCAP243233 MCA_1138MCA_1139MCA_1349MCA_1142MCA_1138MCA_1141MCA_1142
MBUR259564 MBUR_1294MBUR_0135MBUR_1289MBUR_0135MBUR_1294MBUR_1293MBUR_0135
MBOV410289 BCG_0120BCG_0119BCG_3179BCG_0116BCG_0120BCG_0117BCG_0116
MBOV233413 MB0090MB0089MB3180MB0086MB0090MB0087MB0086
MAVI243243 MAV_5109MAV_5110MAV_4044MAV_5113MAV_5109MAV_5112MAV_5113
MAEO419665 MAEO_0306MAEO_0940MAEO_0943MAEO_0371MAEO_0942MAEO_0943
MACE188937 MA4372MA4371MA4572MA4368MA4372MA4369MA4368
KPNE272620 GKPORF_B2391GKPORF_B1972GKPORF_B2393GKPORF_B2391GKPORF_B2392GKPORF_B2393
GURA351605 GURA_0803GURA_0889GURA_0320GURA_0892GURA_0803GURA_0891GURA_4066
GSUL243231 GSU_3444GSU_0742GSU_2344GSU_0734GSU_3444GSU_0740GSU_0734
GMET269799 GMET_0153GMET_0372GMET_0168GMET_2601GMET_0153GMET_2600GMET_0375
FSUC59374 FSU2888FSU2888FSU2888FSU2663FSU2892FSU2887
FSP1855 FRANEAN1_6091FRANEAN1_6083FRANEAN1_5212FRANEAN1_6091FRANEAN1_6087FRANEAN1_5212
ESP42895 ENT638_3194ENT638_2822ENT638_3196ENT638_3194ENT638_3195ENT638_3196
EFER585054 EFER_0688EFER_0689EFER_0691EFER_0693EFER_0688EFER_0355EFER_0354
ECOO157 HYCEHYFFHYFDHYFBHYCEHYCDHYCC
ECOL83334 ECS3577ECS3348ECS3346ECS3344ECS3577ECS3578ECS3579
ECOL585397 ECED1_3172ECED1_2742ECED1_3174ECED1_3172ECED1_3173ECED1_3174
ECOL585057 ECIAI39_2909ECIAI39_2625ECIAI39_2623ECIAI39_2621ECIAI39_2909ECIAI39_2910ECIAI39_2911
ECOL585056 ECUMN_3043ECUMN_2799ECUMN_2797ECUMN_2795ECUMN_3043ECUMN_3044ECUMN_3045
ECOL585055 EC55989_2987EC55989_2771EC55989_2522EC55989_2765EC55989_2987EC55989_2988EC55989_2989
ECOL585035 ECS88_2986ECS88_2425ECS88_2988ECS88_2986ECS88_2987ECS88_2988
ECOL585034 ECIAI1_2815ECIAI1_2537ECIAI1_2535ECIAI1_2533ECIAI1_2815ECIAI1_2816ECIAI1_2817
ECOL481805 ECOLC_1189ECOLC_1190ECOLC_1192ECOLC_1194ECOLC_1189ECOLC_0990ECOLC_0989
ECOL469008 ECBD_1201ECBD_1202ECBD_1204ECBD_1207ECBD_1201ECBD_1003ECBD_1002
ECOL439855 ECSMS35_2846ECSMS35_2633ECSMS35_2631ECSMS35_2629ECSMS35_2846ECSMS35_2847ECSMS35_2848
ECOL413997 ECB_02571ECB_02378ECB_02376ECB_02374ECB_02571ECB_02572ECB_02573
ECOL409438 ECSE_2969ECSE_2771ECSE_2769ECSE_2766ECSE_2969ECSE_2970ECSE_2971
ECOL405955 APECO1_3804APECO1_4287APECO1_3802APECO1_3804APECO1_3803APECO1_3802
ECOL364106 UTI89_C3084UTI89_C2558UTI89_C3086UTI89_C3084UTI89_C3085UTI89_C3086
ECOL362663 ECP_2684ECP_2317ECP_2686ECP_2684ECP_2685ECP_2686
ECOL331111 ECE24377A_3009ECE24377A_2571ECE24377A_3011ECE24377A_3009ECE24377A_3010ECE24377A_3011
ECOL316407 ECK2716:JW2691:B2721ECK2482:JW2471:B2486ECK2480:JW2469:B2484ECK2478:JW2467:B2482ECK2716:JW2691:B2721ECK2717:JW2692:B2722ECK2718:JW2693:B2723
ECOL199310 C3281C2819C3283C3281C3282C3283
ECAR218491 ECA1241ECA1242ECA1244ECA1246ECA1241ECA1245ECA1246
DVUL882 DVU_0430DVU_2286DVU_2286DVU_2291DVU_2287DVU_2286
DSP255470 CBDBA1653CBDBA1655CBDBA883CBDBA1659CBDBA850CBDBA1658CBDBA1659
DSP216389 DEHABAV1_1317DEHABAV1_1318DEHABAV1_0815DEHABAV1_1321DEHABAV1_0785DEHABAV1_1320DEHABAV1_1321
DPSY177439 DP1043DP1044DP1047DP1318DP1046DP1047
DHAF138119 DSY3115DSY3116DSY4176DSY3119DSY3115DSY3118DSY3119
DETH243164 DET_1571DET_1572DET_0931DET_1575DET_0867DET_1574DET_1575
CTEP194439 CT_0769CT_0774CT_0774CT_0775CT_0769CT_0770
CSAL290398 CSAL_3130CSAL_0903CSAL_3122CSAL_3130CSAL_3126CSAL_0903
CPRO264201 PC0562PC0570PC0570PC0562PC0566PC0570
CMET456442 MBOO_1123MBOO_1124MBOO_1127MBOO_1123MBOO_1126MBOO_1127
CKOR374847 KCR_0139KCR_0144KCR_0145KCR_0144KCR_0139KCR_0140
CHYD246194 CHY_1827CHY_1832CHY_1417CHY_1832CHY_1827CHY_1831CHY_1832
CFET360106 CFF8240_0127CFF8240_0128CFF8240_0132CFF8240_0127CFF8240_0131CFF8240_0132
CCUR360105 CCV52592_1635CCV52592_1038CCV52592_1518CCV52592_1791CCV52592_1635CCV52592_1790CCV52592_1791
CCON360104 CCC13826_0711CCC13826_1911CCC13826_1667CCC13826_1914CCC13826_0711CCC13826_1913CCC13826_1914
CCHL340177 CAG_0637CAG_0642CAG_0642CAG_0643CAG_0637CAG_0638
CBEI290402 CBEI_2993CBEI_2988CBEI_2988CBEI_2993CBEI_2992CBEI_2988
BXEN266265 BXE_B0325BXE_C0176BXE_B0329BXE_B0325BXE_C0178BXE_B0329
BTHE226186 BT_4065BT_4060BT_4060BT_4060BT_4065BT_4064
BTHA271848 BTH_II1265BTH_II1264BTH_II1261BTH_II1265BTH_II1262BTH_II1261
BPSE320373 BURPS668_A1613BURPS668_A1614BURPS668_A1617BURPS668_A1613BURPS668_A1616BURPS668_A1617
BPSE320372 BURPS1710B_B0124BURPS1710B_B0125BURPS1710B_B0128BURPS1710B_B0124BURPS1710B_B0127BURPS1710B_B0128
BPSE272560 BPSS1143BPSS1144BPSS1147BPSS1143BPSS1146BPSS1147
BJAP224911 BLR6343BLR6342BLR6339BLR6343BLR6340BLR6339
BFRA295405 BF0867BF0862BF0862BF0862BF0867BF0866BF0862
BFRA272559 BF0790BF0785BF0785BF0785BF0790BF0789BF0785
ASP76114 EBA4187EBA4190EBA558EBA4193EBA4187EBA4192EBA4193
ASP62977 ACIAD0733ACIAD0376ACIAD0376ACIAD0733ACIAD0737ACIAD0741
ASAL382245 ASA_1812ASA_1814ASA_1726ASA_1814ASA_1812ASA_1813ASA_1814
AHYD196024 AHA_2502AHA_2500AHA_1772AHA_2500AHA_2502AHA_2501AHA_2500
AFER243159 AFE_0944AFE_0945AFE_0485AFE_0948AFE_0944AFE_0947AFE_0948
ADEH290397 ADEH_3659ADEH_3658ADEH_0413ADEH_3655ADEH_3659ADEH_3656ADEH_3655
ACRY349163 ACRY_1400ACRY_1399ACRY_0932ACRY_1396ACRY_1400ACRY_1397ACRY_1396
ACEL351607 ACEL_0270ACEL_0729ACEL_0278ACEL_0726ACEL_0270ACEL_0731ACEL_0726
ACAU438753 AZC_4356AZC_4357AZC_4360AZC_4360AZC_4356AZC_4359AZC_4360


Organism features enriched in list (features available for 143 out of the 148 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.0000222892
Arrangment:Singles 0.003619583286
Disease:Bubonic_plague 0.000200966
Disease:Dysentery 0.000200966
Disease:Gastroenteritis 0.0006508913
GC_Content_Range4:0-40 2.510e-228213
GC_Content_Range4:40-60 7.550e-984224
GC_Content_Range4:60-100 0.000615450145
GC_Content_Range7:0-30 0.0001337247
GC_Content_Range7:30-40 1.168e-166166
GC_Content_Range7:50-60 4.755e-849107
GC_Content_Range7:60-70 0.000608347134
Genome_Size_Range5:0-2 1.638e-814155
Genome_Size_Range5:2-4 0.000058230197
Genome_Size_Range5:4-6 5.802e-1279184
Genome_Size_Range5:6-10 0.00224822047
Genome_Size_Range9:1-2 0.000011014128
Genome_Size_Range9:2-3 0.000927617120
Genome_Size_Range9:4-5 2.918e-64296
Genome_Size_Range9:5-6 0.00003973788
Genome_Size_Range9:6-8 0.00258071738
Gram_Stain:Gram_Neg 1.956e-6105333
Gram_Stain:Gram_Pos 2.648e-617150
Habitat:Host-associated 0.005293839206
Habitat:Multiple 0.001864457178
Motility:No 0.002389825151
Motility:Yes 0.000014187267
Optimal_temp.:25-30 0.00130831119
Oxygen_Req:Facultative 0.007908860201
Shape:Coccus 6.457e-8382
Shape:Irregular_coccus 0.0075507917
Shape:Rod 0.0000138106347



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 189
Effective number of orgs (counting one per cluster within 468 clusters): 141

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM40
VVUL216895 ncbi Vibrio vulnificus CMCP60
VVUL196600 ncbi Vibrio vulnificus YJ0160
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106330
VFIS312309 ncbi Vibrio fischeri ES1140
VCHO345073 ncbi Vibrio cholerae O3951
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TTUR377629 ncbi Teredinibacter turnerae T79010
TPET390874 ncbi Thermotoga petrophila RKU-10
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TLET416591 ncbi Thermotoga lettingae TMO0
TDEN243275 ncbi Treponema denticola ATCC 354050
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen0
STHE322159 ncbi Streptococcus thermophilus LMD-90
STHE299768 ncbi Streptococcus thermophilus CNRZ10660
STHE264199 ncbi Streptococcus thermophilus LMG 183110
SSUI391296 ncbi Streptococcus suis 98HAH330
SSUI391295 ncbi Streptococcus suis 05ZYH330
SSP94122 ncbi Shewanella sp. ANA-30
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370552 ncbi Streptococcus pyogenes MGAS102700
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103940
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SPNE488221 ncbi Streptococcus pneumoniae 705850
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-60
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-140
SPNE171101 ncbi Streptococcus pneumoniae R60
SPNE170187 ncbi Streptococcus pneumoniae G540
SPNE1313 Streptococcus pneumoniae0
SPEA398579 ncbi Shewanella pealeana ATCC 7003451
SMUT210007 ncbi Streptococcus mutans UA1590
SLOI323850 ncbi Shewanella loihica PV-40
SHAL458817 ncbi Shewanella halifaxensis HAW-EB41
SGOR29390 Streptococcus gordonii Challis0
SDEN318161 ncbi Shewanella denitrificans OS2170
SDEG203122 ncbi Saccharophagus degradans 2-400
SBAL402882 ncbi Shewanella baltica OS1850
SBAL399599 ncbi Shewanella baltica OS1950
SALA317655 ncbi Sphingopyxis alaskensis RB22561
SAGA211110 ncbi Streptococcus agalactiae NEM3160
SAGA208435 ncbi Streptococcus agalactiae 2603V/R0
SAGA205921 ncbi Streptococcus agalactiae A9090
SACI56780 ncbi Syntrophus aciditrophicus SB0
RSOL267608 ncbi Ralstonia solanacearum GMI10001
RALB246199 Ruminococcus albus 80
RAKA293614 ncbi Rickettsia akari Hartford1
PTHE370438 ncbi Pelotomaculum thermopropionicum SI0
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-11
PSP117 Pirellula sp.1
PPRO298386 ncbi Photobacterium profundum SS90
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257450
PMUL272843 ncbi Pasteurella multocida multocida Pm700
PGIN242619 ncbi Porphyromonas gingivalis W830
PDIS435591 ncbi Parabacteroides distasonis ATCC 85030
PATL342610 ncbi Pseudoalteromonas atlantica T6c0
PAST100379 Onion yellows phytoplasma0
PAER178306 ncbi Pyrobaculum aerophilum IM20
PACN267747 ncbi Propionibacterium acnes KPA1712020
NMEN374833 ncbi Neisseria meningitidis 0534420
NMEN272831 ncbi Neisseria meningitidis FAM180
NMEN122587 ncbi Neisseria meningitidis Z24910
NMEN122586 ncbi Neisseria meningitidis MC580
NGON242231 ncbi Neisseria gonorrhoeae FA 10900
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124440
MSYN262723 ncbi Mycoplasma synoviae 530
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E0
MSP409 Methylobacterium sp.1
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPET420662 ncbi Methylibium petroleiphilum PM11
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAR394221 ncbi Maricaulis maris MCS101
MLEP272631 ncbi Mycobacterium leprae TN0
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MART243272 ncbi Mycoplasma arthritidis 158L3-10
LXYL281090 ncbi Leifsonia xyli xyli CTCB070
LSAK314315 ncbi Lactobacillus sakei sakei 23K0
LREU557436 ncbi Lactobacillus reuteri DSM 200160
LPNE400673 ncbi Legionella pneumophila Corby1
LPNE297246 ncbi Legionella pneumophila Paris1
LPNE297245 ncbi Legionella pneumophila Lens1
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 11
LPLA220668 ncbi Lactobacillus plantarum WCFS10
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82930
LLAC272623 ncbi Lactococcus lactis lactis Il14030
LLAC272622 ncbi Lactococcus lactis cremoris SK110
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-000
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LCAS321967 ncbi Lactobacillus casei ATCC 3340
LBRE387344 ncbi Lactobacillus brevis ATCC 3670
LACI272621 ncbi Lactobacillus acidophilus NCFM0
HSOM228400 ncbi Haemophilus somnus 23360
HSOM205914 ncbi Haemophilus somnus 129PT0
HNEP81032 Hyphomonas neptunium1
HINF71421 ncbi Haemophilus influenzae Rd KW200
HINF374930 ncbi Haemophilus influenzae PittEE0
HINF281310 ncbi Haemophilus influenzae 86-028NP0
HDUC233412 ncbi Haemophilus ducreyi 35000HP0
GOXY290633 ncbi Gluconobacter oxydans 621H0
GFOR411154 ncbi Gramella forsetii KT08031
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-001
FTUL418136 ncbi Francisella tularensis tularensis WY96-34181
FTUL401614 ncbi Francisella novicida U1121
FTUL393115 ncbi Francisella tularensis tularensis FSC1981
FTUL393011 ncbi Francisella tularensis holarctica OSU181
FTUL351581 Francisella tularensis holarctica FSC2001
FRANT ncbi Francisella tularensis tularensis SCHU S41
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250171
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255860
FMAG334413 ncbi Finegoldia magna ATCC 293280
EFAE226185 ncbi Enterococcus faecalis V5830
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas1
DOLE96561 ncbi Desulfococcus oleovorans Hxd30
DNOD246195 ncbi Dichelobacter nodosus VCS1703A0
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G200
DARO159087 ncbi Dechloromonas aromatica RCB0
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA1
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CSP78 Caulobacter sp.0
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPER289380 ncbi Clostridium perfringens SM1010
CPER195103 ncbi Clostridium perfringens ATCC 131240
CPER195102 ncbi Clostridium perfringens 130
CNOV386415 ncbi Clostridium novyi NT0
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMAQ397948 ncbi Caldivirga maquilingensis IC-1671
CKLU431943 ncbi Clostridium kluyveri DSM 5550
CJEI306537 ncbi Corynebacterium jeikeium K4111
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130321
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CEFF196164 ncbi Corynebacterium efficiens YS-3141
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131291
CDIF272563 ncbi Clostridium difficile 6300
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto0
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6570
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B0
CBOT498213 ncbi Clostridium botulinum B1 str. Okra0
CBOT441772 ncbi Clostridium botulinum F str. Langeland0
CBOT441771 ncbi Clostridium botulinum A str. Hall0
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193970
CBOT36826 Clostridium botulinum A0
CAULO ncbi Caulobacter crescentus CB151
CACE272562 ncbi Clostridium acetobutylicum ATCC 8240
CABO218497 ncbi Chlamydophila abortus S26/30
BTUR314724 ncbi Borrelia turicatae 91E1350
BSP376 Bradyrhizobium sp.0
BLON206672 ncbi Bifidobacterium longum NCC27050
BHER314723 ncbi Borrelia hermsii DAH0
BGAR290434 ncbi Borrelia garinii PBi0
BBUR224326 ncbi Borrelia burgdorferi B310
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL030
APLE416269 ncbi Actinobacillus pleuropneumoniae L200
AORE350688 ncbi Alkaliphilus oremlandii OhILAs0
ANAE240017 Actinomyces oris MG10
AMAR234826 ncbi Anaplasma marginale St. Maries1
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
AAUR290340 ncbi Arthrobacter aurescens TC11


Names of the homologs of the genes in the group in each of these orgs
  G7304   G7303   G7301   EG11282   EG10478   EG10477   EG10476   
ZMOB264203
VVUL216895
VVUL196600
VPAR223926
VFIS312309
VCHO345073 VC0395_1123
UURE95667
UURE95664
UPAR505682
TWHI218496
TWHI203267
TTUR377629
TPET390874
TPAL243276
TLET416591
TDEN243275
SWOL335541
STHE322159
STHE299768
STHE264199
SSUI391296
SSUI391295
SSP94122
SPYO370554
SPYO370553
SPYO370552
SPYO370551
SPYO319701
SPYO293653
SPYO286636
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SPNE488221
SPNE487214
SPNE487213
SPNE171101
SPNE170187
SPNE1313
SPEA398579 SPEA_3284
SMUT210007
SLOI323850
SHAL458817 SHAL_3361
SGOR29390
SDEN318161
SDEG203122
SBAL402882
SBAL399599
SALA317655 SALA_1297
SAGA211110
SAGA208435
SAGA205921
SACI56780
RSOL267608 RSC2051
RALB246199
RAKA293614 A1C_06145
PTHE370438
PSP312153 PNUC_1040
PSP117 RB1431
PPRO298386
PPEN278197
PMUL272843
PGIN242619
PDIS435591
PATL342610
PAST100379
PAER178306
PACN267747
NMEN374833
NMEN272831
NMEN122587
NMEN122586
NGON242231
NARO279238
MSYN262723
MSUC221988
MSP409 M446_4397
MPUL272635
MPNE272634
MPET420662 MPE_A1414
MPEN272633
MMYC272632
MMOB267748
MMAR394221 MMAR10_0890
MLEP272631
MHYO295358
MHYO262722
MHYO262719
MGEN243273
MFLO265311
MCAP340047
MART243272
LXYL281090
LSAK314315
LREU557436
LPNE400673 LPC_3068
LPNE297246 LPP2829
LPNE297245 LPL2698
LPNE272624 LPG2782
LPLA220668
LMES203120
LLAC272623
LLAC272622
LJOH257314
LINT363253
LHEL405566
LGAS324831
LDEL390333
LDEL321956
LCAS321967
LBRE387344
LACI272621
HSOM228400
HSOM205914
HNEP81032 HNE_0735
HINF71421
HINF374930
HINF281310
HDUC233412
GOXY290633
GFOR411154 GFO_3553
FTUL458234 FTA_1931
FTUL418136 FTW_0113
FTUL401614 FTN_1673
FTUL393115 FTF0038
FTUL393011 FTH_1759
FTUL351581 FTL_1823
FRANT NUOH
FPHI484022 FPHI_0936
FNUC190304
FMAG334413
EFAE226185
ECHA205920 ECH_0179
DOLE96561
DNOD246195
DDES207559
DARO159087
CVES412965 COSY_0236
CTRA471473
CTRA471472
CSUL444179
CSP78
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPER289380
CPER195103
CPER195102
CNOV386415
CMUR243161
CMAQ397948 CMAQ_0428
CKLU431943
CJEI306537 JK1986
CGLU196627 CG0326
CFEL264202
CEFF196164 CE1397
CDIP257309 DIP0293
CDIF272563
CCAV227941
CBOT536232
CBOT515621
CBOT508765
CBOT498213
CBOT441772
CBOT441771
CBOT441770
CBOT36826
CAULO CC1939
CACE272562
CABO218497
BTUR314724
BSP376
BLON206672
BHER314723
BGAR290434
BBUR224326
BAFZ390236
AYEL322098
AURANTIMONAS
APLE434271
APLE416269
AORE350688
ANAE240017
AMAR234826 AM640
ALAI441768
AFUL224325
AAUR290340 AAUR_3679


Organism features enriched in list (features available for 174 out of the 189 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 3.602e-95292
Disease:Botulism 0.002273555
Disease:Legionnaire's_disease 0.007743344
Disease:Meningitis 0.003298467
Disease:Meningitis_and_septicemia 0.007743344
Disease:Pharyngitis 0.000056188
Disease:Pneumonia 0.0012866912
Disease:Tularemia 0.002273555
Disease:Wide_range_of_infections 1.333e-61111
Disease:bronchitis_and_pneumonitis 0.000056188
Disease:otitis_media 0.007743344
Disease:sinusitis 0.007743344
Endospores:No 0.003813576211
GC_Content_Range4:0-40 8.254e-12100213
GC_Content_Range4:60-100 1.232e-1212145
GC_Content_Range7:0-30 7.918e-83147
GC_Content_Range7:30-40 0.000049569166
GC_Content_Range7:50-60 0.000337818107
GC_Content_Range7:60-70 6.777e-1112134
Genome_Size_Range5:0-2 1.511e-1078155
Genome_Size_Range5:4-6 3.306e-828184
Genome_Size_Range5:6-10 5.635e-7147
Genome_Size_Range9:0-1 1.673e-72127
Genome_Size_Range9:1-2 0.000027057128
Genome_Size_Range9:4-5 0.00025621596
Genome_Size_Range9:5-6 0.00023421388
Genome_Size_Range9:6-8 0.0000146138
Gram_Stain:Gram_Neg 0.008420588333
Gram_Stain:Gram_Pos 7.628e-666150
Habitat:Host-associated 1.993e-686206
Habitat:Specialized 0.0001696553
Habitat:Terrestrial 0.0011519231
Motility:No 0.000050964151
Motility:Yes 2.693e-655267
Optimal_temp.:- 0.001974162257
Optimal_temp.:30-35 0.003298467
Optimal_temp.:35-37 0.0029733913
Optimal_temp.:37 5.513e-651106
Oxygen_Req:Aerobic 0.000245138185
Oxygen_Req:Facultative 6.371e-683201
Pathogenic_in:Human 0.000012286213
Pathogenic_in:No 0.000046647226
Pathogenic_in:Swine 0.002273555
Salinity:Non-halophilic 5.513e-651106
Shape:Coccus 0.00004844082
Shape:Sphere 8.882e-61519
Temp._range:Mesophilic 0.0009235154473
Temp._range:Thermophilic 0.0016530335



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ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 35
Effective number of orgs (counting one per cluster within 468 clusters): 28

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
TPEN368408 ncbi Thermofilum pendens Hrk 5 4.662e-63457
PABY272844 ncbi Pyrococcus abyssi GE5 0.00003344567
MBUR259564 ncbi Methanococcoides burtonii DSM 6242 0.00003714637
TKOD69014 ncbi Thermococcus kodakarensis KOD1 0.00003944677
MHUN323259 ncbi Methanospirillum hungatei JF-1 0.00005154857
DETH243164 ncbi Dehalococcoides ethenogenes 195 0.00016865747
DSP216389 ncbi Dehalococcoides sp. BAV1 0.00019275857
DSP255470 ncbi Dehalococcoides sp. CBDB1 0.00020705917
MMAZ192952 ncbi Methanosarcina mazei Go1 0.00023036007
MAEO419665 ncbi Methanococcus aeolicus Nankai-3 0.00040123446
MACE188937 ncbi Methanosarcina acetivorans C2A 0.00041776537
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF8 0.00047633546
MLAB410358 ncbi Methanocorpusculum labreanum Z 0.00055353636
PHOR70601 ncbi Pyrococcus horikoshii OT3 0.00082413886
CCON360104 ncbi Campylobacter concisus 13826 0.00107517477
CMET456442 ncbi Candidatus Methanoregula boonei 6A8 0.00116224116
CCUR360105 ncbi Campylobacter curvus 525.92 0.00121377607
NSP387092 ncbi Nitratiruptor sp. SB155-2 0.00180248047
PFUR186497 ncbi Pyrococcus furiosus DSM 3638 0.00230384616
MTBCDC ncbi Mycobacterium tuberculosis CDC1551 0.00282258577
MTBRV ncbi Mycobacterium tuberculosis H37Rv 0.00303758667
MBOV233413 ncbi Mycobacterium bovis AF2122/97 0.00306228677
ACEL351607 ncbi Acidothermus cellulolyticus 11B 0.00311218697
MTUB336982 ncbi Mycobacterium tuberculosis F11 0.00313748707
SSP387093 ncbi Sulfurovum sp. NBC37-1 0.00313748707
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P2 0.00313748707
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra 0.00316288717
WSUC273121 ncbi Wolinella succinogenes DSM 1740 0.00321428737
SMAR399550 ncbi Staphylothermus marinus F1 0.00484582735
MAVI243243 ncbi Mycobacterium avium 104 0.00540279407
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP1375 0.00636705476
UMET351160 ncbi uncultured methanogenic archaeon RC-I 0.00771475656
BFRA295405 ncbi Bacteroides fragilis YCH46 0.00782959917
BFRA272559 ncbi Bacteroides fragilis NCTC 9343 0.00794119937
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE25 0.00838525736


Names of the homologs of the genes in the group in each of these orgs
  G7304   G7303   G7301   EG11282   EG10478   EG10477   EG10476   
TPEN368408 TPEN_0183TPEN_0185TPEN_0180TPEN_0188TPEN_0183TPEN_0187TPEN_0188
PABY272844 PAB1394PAB1888PAB1391PAB1392PAB1394PAB1393PAB1392
MBUR259564 MBUR_1294MBUR_0135MBUR_1289MBUR_0135MBUR_1294MBUR_1293MBUR_0135
TKOD69014 TK2091TK1220TK2087TK2087TK2091TK2092TK2087
MHUN323259 MHUN_2590MHUN_1819MHUN_1741MHUN_1822MHUN_1745MHUN_1821MHUN_1822
DETH243164 DET_1571DET_1572DET_0931DET_1575DET_0867DET_1574DET_1575
DSP216389 DEHABAV1_1317DEHABAV1_1318DEHABAV1_0815DEHABAV1_1321DEHABAV1_0785DEHABAV1_1320DEHABAV1_1321
DSP255470 CBDBA1653CBDBA1655CBDBA883CBDBA1659CBDBA850CBDBA1658CBDBA1659
MMAZ192952 MM2324MM1062MM2482MM1059MM1063MM1060MM1059
MAEO419665 MAEO_0306MAEO_0940MAEO_0943MAEO_0371MAEO_0942MAEO_0943
MACE188937 MA4372MA4371MA4572MA4368MA4372MA4369MA4368
CKOR374847 KCR_0139KCR_0144KCR_0145KCR_0144KCR_0139KCR_0140
MLAB410358 MLAB_0959MLAB_0955MLAB_0955MLAB_0959MLAB_0960MLAB_0955
PHOR70601 PH1437PH1452PH1431PH1437PH1439PH1431
CCON360104 CCC13826_0711CCC13826_1911CCC13826_1667CCC13826_1914CCC13826_0711CCC13826_1913CCC13826_1914
CMET456442 MBOO_1123MBOO_1124MBOO_1127MBOO_1123MBOO_1126MBOO_1127
CCUR360105 CCV52592_1635CCV52592_1038CCV52592_1518CCV52592_1791CCV52592_1635CCV52592_1790CCV52592_1791
NSP387092 NIS_0715NIS_0716NIS_0300NIS_0719NIS_0715NIS_0718NIS_0719
PFUR186497 PF1434PF1430PF1430PF1434PF1435PF1430
MTBCDC MT3236MT0093MT3244MT0090MT3236MT0091MT0090
MTBRV RV0087RV0086RV3156RV0083RV0087RV0084RV0083
MBOV233413 MB0090MB0089MB3180MB0086MB0090MB0087MB0086
ACEL351607 ACEL_0270ACEL_0729ACEL_0278ACEL_0726ACEL_0270ACEL_0731ACEL_0726
MTUB336982 TBFG_10088TBFG_10087TBFG_13177TBFG_10084TBFG_10088TBFG_10085TBFG_10084
SSP387093 SUN_0263SUN_0259SUN_0851SUN_0259SUN_0846SUN_0260SUN_0259
MBOV410289 BCG_0120BCG_0119BCG_3179BCG_0116BCG_0120BCG_0117BCG_0116
MTUB419947 MRA_0091MRA_0090MRA_3189MRA_0087MRA_0091MRA_0088MRA_0087
WSUC273121 WS1838WS1839WS0485WS1842WS1838WS1841WS1842
SMAR399550 SMAR_1061SMAR_0645SMAR_1061SMAR_1060SMAR_0028
MAVI243243 MAV_5109MAV_5110MAV_4044MAV_5113MAV_5109MAV_5112MAV_5113
PMAR167539 PRO_0197PRO_0172PRO_0172PRO_0172PRO_0197PRO_0184
UMET351160 RCIX2383RCIX2384RCIX2387RCIX2383RCIX2386RCIX2387
BFRA295405 BF0867BF0862BF0862BF0862BF0867BF0866BF0862
BFRA272559 BF0790BF0785BF0785BF0785BF0790BF0789BF0785
CPRO264201 PC0562PC0570PC0570PC0562PC0566PC0570


Organism features enriched in list (features available for 35 out of the 35 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Disease:Severe_infection 0.003507222
Disease:Tuberculosis 0.000199233
Disease:and_abcesses 0.003507222
Disease:diarrhea 0.009923923
Endospores:No 0.000616222211
GC_Content_Range4:0-40 0.00619736213
GC_Content_Range4:40-60 0.004113321224
GC_Content_Range7:40-50 0.000067017117
Genome_Size_Range9:1-2 0.006527714128
Gram_Stain:Gram_Neg 0.00001918333
Habitat:Multiple 0.00477804178
Motility:No 0.004657816151
Oxygen_Req:Anaerobic 4.053e-820102
Oxygen_Req:Facultative 4.305e-61201
Shape:Irregular_coccus 5.865e-8917
Shape:Rod 0.003265413347
Temp._range:Hyperthermophilic 0.0012669623



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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
PWY0-1315 (L-lactaldehyde degradation (anaerobic))45390.4125



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G7303   G7301   EG11282   EG10478   EG10477   EG10476   
G73040.9996120.9994370.999560.9999740.9998260.999548
G73030.9997470.9998790.9995840.9997150.999839
G73010.9997030.9995050.9993090.999665
EG112820.999530.9997540.999892
EG104780.9998330.999532
EG104770.999726
EG10476



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PAIRWISE BLAST SCORES:

  G7304   G7303   G7301   EG11282   EG10478   EG10477   EG10476   
G73040.0f0---0--
G7303-0.0f0-9.0e-32---
G7301--0.0f0----
EG11282--3.5e-200.0f0--3.5e-70
EG104780---0.0f0--
EG10477-----0.0f0-
EG10476-2.9e-13-1.5e-77--0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- HYDROG3-CPLX (hydrogenase 3) (degree of match pw to cand: 0.500, degree of match cand to pw: 0.429, average score: 0.999)
  Genes in pathway or complex:
   *in cand* 0.9997 0.9995 EG10478 (hycE) HYCELARGE-MONOMER (hydrogenase 3, large subunit)
             0.9976 0.9930 EG10475 (hycB) HYCBSMALL-MONOMER (hydrogenase 3, Fe-S subunit)
             0.9995 0.9987 EG10480 (hycG) HYCG-MONOMER (hydrogenase 3 and formate hydrogenlyase complex, HycG subunit)
             0.9996 0.9993 EG10479 (hycF) HYCF-MONOMER (formate hydrogenlyase complex iron-sulfur protein)
   *in cand* 0.9997 0.9995 EG10476 (hycC) HYCC-MONOMER (hydrogenase 3, membrane subunit)
   *in cand* 0.9997 0.9993 EG10477 (hycD) HYCD-MONOMER (hydrogenase 3, membrane subunit)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9998 0.9995 EG11282 (hyfB) MONOMER0-153 (hydrogenase 4, component B)
   *in cand* 0.9996 0.9993 G7301 (hyfD) MONOMER0-141 (hydrogenase 4, component D)
   *in cand* 0.9998 0.9996 G7303 (hyfF) MONOMER0-143 (hydrogenase 4, component F)
   *in cand* 0.9997 0.9994 G7304 (hyfG) MONOMER0-150 (hydrogenase 4, large subunit)

- FERMENTATION-PWY (mixed acid fermentation) (degree of match pw to cand: 0.107, degree of match cand to pw: 0.429, average score: 0.597)
  Genes in pathway or complex:
             0.8595 0.6904 EG20173 (pta) PHOSACETYLTRANS-MONOMER (Pta)
             0.8840 0.5483 EG10027 (ackA) ACETATEKINA-MONOMER (propionate kinase / acetate kinase)
             0.3868 0.2397 G7627 (tdcE) KETOBUTFORMLY-MONOMER (2-ketobutyrate formate-lyase / pyruvate formate-lyase 4)
             0.3855 0.2786 EG10701 (pflB) PYRUVFORMLY-MONOMER (PflB)
             0.4678 0.2540 G6775 (adhP) ADHP-MONOMER (ethanol dehydrogenase)
             0.6486 0.4845 EG10031 (adhE) ADHE-MONOMER (AdhE)
             0.4854 0.2154 EG10803 (pykA) PKII-MONOMER (pyruvate kinase II monomer)
             0.4826 0.2555 EG10804 (pykF) PKI-MONOMER (pyruvate kinase I monomer)
             0.7516 0.5960 G592 (ldhA) DLACTDEHYDROGNAD-MONOMER (D-lactate dehydrogenase)
             0.6738 0.5875 EG10358 (fumC) FUMC-MONOMER (fumarase C monomer)
             0.7070 0.4926 EG10357 (fumB) FUMB-MONOMER (fumarase B monomer)
             0.7615 0.5964 EG10356 (fumA) FUMA-MONOMER (fumarase A monomer)
             0.7432 0.5604 EG10576 (mdh) MALATE-DEHASE-MONOMER (Mdh)
             0.1781 0.0771 EG10756 (ppc) PEPCARBOX-MONOMER (Ppc)
   *in cand* 0.9997 0.9993 EG10477 (hycD) HYCD-MONOMER (hydrogenase 3, membrane subunit)
   *in cand* 0.9997 0.9995 EG10476 (hycC) HYCC-MONOMER (hydrogenase 3, membrane subunit)
             0.9996 0.9993 EG10479 (hycF) HYCF-MONOMER (formate hydrogenlyase complex iron-sulfur protein)
             0.9995 0.9987 EG10480 (hycG) HYCG-MONOMER (hydrogenase 3 and formate hydrogenlyase complex, HycG subunit)
             0.9976 0.9930 EG10475 (hycB) HYCBSMALL-MONOMER (hydrogenase 3, Fe-S subunit)
   *in cand* 0.9997 0.9995 EG10478 (hycE) HYCELARGE-MONOMER (hydrogenase 3, large subunit)
                NIL    NIL EG10285 (fdhF) FORMATEDEHYDROGH-MONOMER (formate dehydrogenase H)
             0.1724 0.0928 EG10333 (frdD) FUM-MEMB2 (fumarate reductase membrane protein)
             0.0910 0.0569 EG10332 (frdC) FUM-MEMB1 (fumarate reductase membrane protein)
             0.5254 0.1709 EG10331 (frdB) FUM-FE-S (fumarate reductase iron-sulfur protein)
             0.4607 0.1925 EG10330 (frdA) FUM-FLAVO (fumarate reductase flavoprotein)
             0.6677 0.2772 EG10402 (gltA) CITSYN-MONOMER (citrate synthase monomer)
             0.2888 0.0593 EG12316 (acnB) ACONITATEDEHYDRB-MONOMER (bifunctional aconitate hydratase 2 and 2-methylisocitrate dehydratase)
             0.5671 0.0780 EG10489 (icd) ISOCITDEH-SUBUNIT (Icd)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9998 0.9995 EG11282 (hyfB) MONOMER0-153 (hydrogenase 4, component B)
   *in cand* 0.9996 0.9993 G7301 (hyfD) MONOMER0-141 (hydrogenase 4, component D)
   *in cand* 0.9998 0.9996 G7303 (hyfF) MONOMER0-143 (hydrogenase 4, component F)
   *in cand* 0.9997 0.9994 G7304 (hyfG) MONOMER0-150 (hydrogenase 4, large subunit)

- FHLMULTI-CPLX (formate hydrogenlyase complex) (degree of match pw to cand: 0.429, degree of match cand to pw: 0.429, average score: 0.999)
  Genes in pathway or complex:
   *in cand* 0.9997 0.9993 EG10477 (hycD) HYCD-MONOMER (hydrogenase 3, membrane subunit)
   *in cand* 0.9997 0.9995 EG10476 (hycC) HYCC-MONOMER (hydrogenase 3, membrane subunit)
             0.9996 0.9993 EG10479 (hycF) HYCF-MONOMER (formate hydrogenlyase complex iron-sulfur protein)
             0.9995 0.9987 EG10480 (hycG) HYCG-MONOMER (hydrogenase 3 and formate hydrogenlyase complex, HycG subunit)
             0.9976 0.9930 EG10475 (hycB) HYCBSMALL-MONOMER (hydrogenase 3, Fe-S subunit)
   *in cand* 0.9997 0.9995 EG10478 (hycE) HYCELARGE-MONOMER (hydrogenase 3, large subunit)
                NIL    NIL EG10285 (fdhF) FORMATEDEHYDROGH-MONOMER (formate dehydrogenase H)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9998 0.9995 EG11282 (hyfB) MONOMER0-153 (hydrogenase 4, component B)
   *in cand* 0.9996 0.9993 G7301 (hyfD) MONOMER0-141 (hydrogenase 4, component D)
   *in cand* 0.9998 0.9996 G7303 (hyfF) MONOMER0-143 (hydrogenase 4, component F)
   *in cand* 0.9997 0.9994 G7304 (hyfG) MONOMER0-150 (hydrogenase 4, large subunit)

- ANARESP1-PWY (respiration (anaerobic)) (degree of match pw to cand: 0.111, degree of match cand to pw: 0.429, average score: 0.592)
  Genes in pathway or complex:
             0.4854 0.2154 EG10803 (pykA) PKII-MONOMER (pyruvate kinase II monomer)
             0.4826 0.2555 EG10804 (pykF) PKI-MONOMER (pyruvate kinase I monomer)
             0.5098 0.2294 EG10543 (lpd) E3-MONOMER (E3 monomer)
             0.1589 0.0561 EG10025 (aceF) ACEF-LIPOATE (AceF-lipoate)
             0.2534 0.1238 EG10024 (aceE) E1P-MONOMER (subunit of E1p component of pyruvate dehydrogenase complex)
             0.6677 0.2772 EG10402 (gltA) CITSYN-MONOMER (citrate synthase monomer)
             0.2888 0.0593 EG12316 (acnB) ACONITATEDEHYDRB-MONOMER (bifunctional aconitate hydratase 2 and 2-methylisocitrate dehydratase)
             0.5671 0.0780 EG10489 (icd) ISOCITDEH-SUBUNIT (Icd)
             0.1781 0.0771 EG10756 (ppc) PEPCARBOX-MONOMER (Ppc)
             0.7432 0.5604 EG10576 (mdh) MALATE-DEHASE-MONOMER (Mdh)
             0.6738 0.5875 EG10358 (fumC) FUMC-MONOMER (fumarase C monomer)
             0.7070 0.4926 EG10357 (fumB) FUMB-MONOMER (fumarase B monomer)
             0.7615 0.5964 EG10356 (fumA) FUMA-MONOMER (fumarase A monomer)
             0.3868 0.2397 G7627 (tdcE) KETOBUTFORMLY-MONOMER (2-ketobutyrate formate-lyase / pyruvate formate-lyase 4)
             0.3855 0.2786 EG10701 (pflB) PYRUVFORMLY-MONOMER (PflB)
             0.8858 0.7727 EG10258 (eno) ENOLASE-MONOMER (Eno)
   *in cand* 0.9997 0.9993 EG10477 (hycD) HYCD-MONOMER (hydrogenase 3, membrane subunit)
   *in cand* 0.9997 0.9995 EG10476 (hycC) HYCC-MONOMER (hydrogenase 3, membrane subunit)
             0.9996 0.9993 EG10479 (hycF) HYCF-MONOMER (formate hydrogenlyase complex iron-sulfur protein)
             0.9995 0.9987 EG10480 (hycG) HYCG-MONOMER (hydrogenase 3 and formate hydrogenlyase complex, HycG subunit)
             0.9976 0.9930 EG10475 (hycB) HYCBSMALL-MONOMER (hydrogenase 3, Fe-S subunit)
   *in cand* 0.9997 0.9995 EG10478 (hycE) HYCELARGE-MONOMER (hydrogenase 3, large subunit)
                NIL    NIL EG10285 (fdhF) FORMATEDEHYDROGH-MONOMER (formate dehydrogenase H)
             0.1724 0.0928 EG10333 (frdD) FUM-MEMB2 (fumarate reductase membrane protein)
             0.0910 0.0569 EG10332 (frdC) FUM-MEMB1 (fumarate reductase membrane protein)
             0.5254 0.1709 EG10331 (frdB) FUM-FE-S (fumarate reductase iron-sulfur protein)
             0.4607 0.1925 EG10330 (frdA) FUM-FLAVO (fumarate reductase flavoprotein)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9998 0.9995 EG11282 (hyfB) MONOMER0-153 (hydrogenase 4, component B)
   *in cand* 0.9996 0.9993 G7301 (hyfD) MONOMER0-141 (hydrogenase 4, component D)
   *in cand* 0.9998 0.9996 G7303 (hyfF) MONOMER0-143 (hydrogenase 4, component F)
   *in cand* 0.9997 0.9994 G7304 (hyfG) MONOMER0-150 (hydrogenase 4, large subunit)

- CPLX0-250 (hydrogenase 4) (degree of match pw to cand: 0.444, degree of match cand to pw: 0.571, average score: 0.999)
  Genes in pathway or complex:
             0.9994 0.9989 G7305 (hyfH) MONOMER0-144 (hydrogenase 4, component H)
   *in cand* 0.9998 0.9996 G7303 (hyfF) MONOMER0-143 (hydrogenase 4, component F)
             0.9992 0.9977 G7302 (hyfE) MONOMER0-142 (hydrogenase 4, component E)
   *in cand* 0.9996 0.9993 G7301 (hyfD) MONOMER0-141 (hydrogenase 4, component D)
             0.9995 0.9986 G7300 (hyfC) MONOMER0-154 (hydrogenase 4, component C)
   *in cand* 0.9998 0.9995 EG11282 (hyfB) MONOMER0-153 (hydrogenase 4, component B)
             0.9978 0.9952 EG11150 (hyfA) MONOMER0-152 (hydrogenase 4, component A)
             0.9995 0.9989 G7306 (hyfI) MONOMER0-151 (hydrogenase 4, small subunit)
   *in cand* 0.9997 0.9994 G7304 (hyfG) MONOMER0-150 (hydrogenase 4, large subunit)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9997 0.9995 EG10476 (hycC) HYCC-MONOMER (hydrogenase 3, membrane subunit)
   *in cand* 0.9997 0.9993 EG10477 (hycD) HYCD-MONOMER (hydrogenase 3, membrane subunit)
   *in cand* 0.9997 0.9995 EG10478 (hycE) HYCELARGE-MONOMER (hydrogenase 3, large subunit)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG11282 G7301 G7303 G7304 (centered at G7303)
EG10476 EG10477 EG10478 (centered at EG10477)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7304   G7303   G7301   EG11282   EG10478   EG10477   EG10476   
275/623290/623318/623270/623281/623299/623262/623
AAEO224324:0:Tyes058--052-
AAUR290340:2:Tyes--0----
AAVE397945:0:Tyes--19885-0-
ABAC204669:0:Tyes191--19-0
ABAU360910:0:Tyes-0946946--946
ABOR393595:0:Tyes-000--0
ABUT367737:0:Tyes9-0-9--
ACAU438753:0:Tyes0144034
ACEL351607:0:Tyes045884550460455
ACRY349163:8:Tyes4644630460464461460
ADEH290397:0:Tyes3282328103278328232793278
AEHR187272:0:Tyes--13340-12071337
AFER243159:0:Tyes4484490452448451452
AHYD196024:0:Tyes7097070707709708707
AMAR234826:0:Tyes-----0-
AMAR329726:9:Tyes--0-1195310
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