CANDIDATE ID: 110

CANDIDATE ID: 110

NUMBER OF GENES: 7
AVERAGE SCORE:    9.9972243e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.4285714e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7554 (hybO) (b2997)
   Products of gene:
     - MONOMER0-145 (hydrogenase 2, small subunit)
     - FORMHYDROG2-CPLX (hydrogenase 2)
       Reactions:
        a menaquinone + H2[periplasmic space] + 2 H+  =  a menaquinol + 2 H+[periplasmic space]

- EG11802 (hybD) (b2993)
   Products of gene:
     - EG11802-MONOMER (predicted maturation peptidase for hydrogenase 2)

- EG11801 (hybC) (b2994)
   Products of gene:
     - HYBC-MONOMER (hydrogenase 2, large subunit)
     - FORMHYDROG2-CPLX (hydrogenase 2)
       Reactions:
        a menaquinone + H2[periplasmic space] + 2 H+  =  a menaquinol + 2 H+[periplasmic space]

- EG10471 (hyaD) (b0975)
   Products of gene:
     - EG10471-MONOMER (protein involved in processing of HyaA and HyaB proteins)

- EG10470 (hyaC) (b0974)
   Products of gene:
     - HYAC-MONOMER (hydrogenase 1, b-type cytochrome subunit)
     - FORMHYDROGI-CPLX (hydrogenase 1)
       Reactions:
        a menaquinone + H2[periplasmic space] + 2 H+  =  a menaquinol + 2 H+[periplasmic space]

- EG10469 (hyaB) (b0973)
   Products of gene:
     - HYAB-MONOMER (hydrogenase 1, large subunit)
     - FORMHYDROGI-CPLX (hydrogenase 1)
       Reactions:
        a menaquinone + H2[periplasmic space] + 2 H+  =  a menaquinol + 2 H+[periplasmic space]

- EG10468 (hyaA) (b0972)
   Products of gene:
     - HYAA-MONOMER (hydrogenase 1, small subunit)
     - FORMHYDROGI-CPLX (hydrogenase 1)
       Reactions:
        a menaquinone + H2[periplasmic space] + 2 H+  =  a menaquinol + 2 H+[periplasmic space]



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ORGANISMS CONTAINING AT LEAST 6 GENES FROM THE GROUP:

Total number of orgs: 137
Effective number of orgs (counting one per cluster within 468 clusters): 104

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80816
XAUT78245 ncbi Xanthobacter autotrophicus Py27
WSUC273121 ncbi Wolinella succinogenes DSM 17407
UMET351160 ncbi uncultured methanogenic archaeon RC-I6
TROS309801 ncbi Thermomicrobium roseum DSM 51596
TERY203124 ncbi Trichodesmium erythraeum IMS1016
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12517
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252596
TCRU317025 ncbi Thiomicrospira crunogena XCL-26
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT27
SSP94122 ncbi Shewanella sp. ANA-37
SSP387093 ncbi Sulfurovum sp. NBC37-17
SSON300269 ncbi Shigella sonnei Ss0466
SSED425104 ncbi Shewanella sediminis HAW-EB37
SPEA398579 ncbi Shewanella pealeana ATCC 7003457
SONE211586 ncbi Shewanella oneidensis MR-17
SLOI323850 ncbi Shewanella loihica PV-47
SHIGELLA ncbi Shigella flexneri 2a str. 2457T7
SHAL458817 ncbi Shewanella halifaxensis HAW-EB47
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB6
SFLE373384 ncbi Shigella flexneri 5 str. 84017
SFLE198214 ncbi Shigella flexneri 2a str. 3017
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23386
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4767
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B677
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91507
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT187
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty27
SDYS300267 ncbi Shigella dysenteriae Sd1977
SBOY300268 ncbi Shigella boydii Sb2277
SBAL402882 ncbi Shewanella baltica OS1857
SBAL399599 ncbi Shewanella baltica OS1957
SAVE227882 ncbi Streptomyces avermitilis MA-46806
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170257
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170297
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.17
RSP357808 ncbi Roseiflexus sp. RS-17
RSP101510 ncbi Rhodococcus jostii RHA16
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111707
RPAL316057 ncbi Rhodopseudomonas palustris BisB57
RPAL316056 ncbi Rhodopseudomonas palustris BisB187
RPAL316055 ncbi Rhodopseudomonas palustris BisA537
RPAL258594 ncbi Rhodopseudomonas palustris CGA0097
RMET266264 ncbi Ralstonia metallidurans CH347
RFER338969 ncbi Rhodoferax ferrireducens T1187
REUT381666 ncbi Ralstonia eutropha H167
RCAS383372 ncbi Roseiflexus castenholzii DSM 139417
PTHE370438 ncbi Pelotomaculum thermopropionicum SI6
PNAP365044 ncbi Polaromonas naphthalenivorans CJ27
PLUT319225 ncbi Chlorobium luteolum DSM 2737
PISL384616 ncbi Pyrobaculum islandicum DSM 41846
PDIS435591 ncbi Parabacteroides distasonis ATCC 85037
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135146
NSP387092 ncbi Nitratiruptor sp. SB155-27
NSP103690 ncbi Nostoc sp. PCC 71206
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E6
MSME246196 ncbi Mycobacterium smegmatis MC2 1556
MPET420662 ncbi Methylibium petroleiphilum PM17
MMAZ192952 ncbi Methanosarcina mazei Go16
MMAG342108 ncbi Magnetospirillum magneticum AMB-16
MCAP243233 ncbi Methylococcus capsulatus Bath7
MBAR269797 ncbi Methanosarcina barkeri Fusaro6
MAVI243243 ncbi Mycobacterium avium 1046
MACE188937 ncbi Methanosarcina acetivorans C2A6
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-007
HPYL85963 ncbi Helicobacter pylori J997
HPYL357544 ncbi Helicobacter pylori HPAG17
HPY ncbi Helicobacter pylori 266957
HMOD498761 ncbi Heliobacterium modesticaldum Ice17
HHEP235279 ncbi Helicobacter hepaticus ATCC 514497
HACI382638 ncbi Helicobacter acinonychis Sheeba7
GURA351605 ncbi Geobacter uraniireducens Rf47
GSUL243231 ncbi Geobacter sulfurreducens PCA7
GMET269799 ncbi Geobacter metallireducens GS-157
FSP1855 Frankia sp. EAN1pec7
FSP106370 ncbi Frankia sp. CcI36
FJOH376686 ncbi Flavobacterium johnsoniae UW1017
FALN326424 ncbi Frankia alni ACN14a6
EFER585054 ncbi Escherichia fergusonii ATCC 354697
ECOO157 ncbi Escherichia coli O157:H7 EDL9337
ECOL83334 Escherichia coli O157:H77
ECOL585397 ncbi Escherichia coli ED1a7
ECOL585057 ncbi Escherichia coli IAI397
ECOL585056 ncbi Escherichia coli UMN0267
ECOL585055 ncbi Escherichia coli 559897
ECOL585035 ncbi Escherichia coli S887
ECOL585034 ncbi Escherichia coli IAI17
ECOL481805 ncbi Escherichia coli ATCC 87397
ECOL469008 ncbi Escherichia coli BL21(DE3)7
ECOL439855 ncbi Escherichia coli SMS-3-57
ECOL413997 ncbi Escherichia coli B str. REL6067
ECOL409438 ncbi Escherichia coli SE117
ECOL405955 ncbi Escherichia coli APEC O17
ECOL364106 ncbi Escherichia coli UTI897
ECOL362663 ncbi Escherichia coli 5367
ECOL331111 ncbi Escherichia coli E24377A7
ECOL316407 ncbi Escherichia coli K-12 substr. W31107
ECOL199310 ncbi Escherichia coli CFT0737
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10436
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough6
DSP255470 ncbi Dehalococcoides sp. CBDB16
DSP216389 ncbi Dehalococcoides sp. BAV16
DPSY177439 ncbi Desulfotalea psychrophila LSv547
DHAF138119 ncbi Desulfitobacterium hafniense Y517
DETH243164 ncbi Dehalococcoides ethenogenes 1956
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G206
DARO159087 ncbi Dechloromonas aromatica RCB7
CSP501479 Citreicella sp. SE457
CJEJ407148 ncbi Campylobacter jejuni jejuni 811167
CJEJ360109 ncbi Campylobacter jejuni doylei 269.977
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1767
CJEJ195099 ncbi Campylobacter jejuni RM12217
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111687
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29017
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3817
CFET360106 ncbi Campylobacter fetus fetus 82-407
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131297
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C6
CCUR360105 ncbi Campylobacter curvus 525.927
CCON360104 ncbi Campylobacter concisus 138267
BVIE269482 ncbi Burkholderia vietnamiensis G47
BSP376 Bradyrhizobium sp.7
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1107
ASP62928 ncbi Azoarcus sp. BH727
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4496
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL036
APLE416269 ncbi Actinobacillus pleuropneumoniae L206
AHYD196024 Aeromonas hydrophila dhakensis6
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43046
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232707
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-17
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C6
ACRY349163 ncbi Acidiphilium cryptum JF-57
ACAU438753 ncbi Azorhizobium caulinodans ORS 5717
ABUT367737 ncbi Arcobacter butzleri RM40187
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3456
AAEO224324 ncbi Aquifex aeolicus VF57


Names of the homologs of the genes in the group in each of these orgs
  G7554   EG11802   EG11801   EG10471   EG10470   EG10469   EG10468   
YENT393305 YE3609YE3605YE3606YE3605YE3606YE3609
XAUT78245 XAUT_2173XAUT_2176XAUT_2174XAUT_2176XAUT_2175XAUT_2174XAUT_2173
WSUC273121 WS1687WS1684WS1686WS1684WS1685WS1686WS1687
UMET351160 RCIX880RCIX1854RCIX882RCIA172RCIX882RCIX880
TROS309801 TRD_1878TRD_1873TRD_1877TRD_1873TRD_1877TRD_1878
TERY203124 TERY_3369TERY_3367TERY_3368TERY_3367TERY_3368TERY_3369
TDEN326298 TMDEN_1436TMDEN_1433TMDEN_1435TMDEN_1433TMDEN_1434TMDEN_1435TMDEN_1436
TDEN292415 TBD_1378TBD_1380TBD_1375TBD_1380TBD_1375TBD_1378
TCRU317025 TCR_2038TCR_2036TCR_2037TCR_2036TCR_2037TCR_2038
STYP99287 STM3150STM3146STM3147STM1789STM1788STM1787STM1786
SSP94122 SHEWANA3_1880SHEWANA3_1877SHEWANA3_1879SHEWANA3_1877SHEWANA3_1878SHEWANA3_1879SHEWANA3_1880
SSP387093 SUN_1663SUN_1642SUN_1662SUN_1642SUN_1661SUN_1662SUN_1663
SSON300269 SSO_3142SSO_3138SSO_3139SSO_0981SSO_0979SSO_0978
SSED425104 SSED_1908SSED_1905SSED_1907SSED_1905SSED_1906SSED_1907SSED_1908
SPEA398579 SPEA_2033SPEA_2030SPEA_2032SPEA_2030SPEA_2031SPEA_2032SPEA_2033
SONE211586 SO_2099SO_2096SO_2098SO_2096SO_2097SO_2098SO_2099
SLOI323850 SHEW_1765SHEW_1762SHEW_1764SHEW_1762SHEW_1763SHEW_1764SHEW_1765
SHIGELLA S3245HYBDHYBCHYADHYACHYABHYAA
SHAL458817 SHAL_2261SHAL_2264SHAL_2262SHAL_2264SHAL_2263SHAL_2262SHAL_2261
SFUM335543 SFUM_2953SFUM_2951SFUM_2952SFUM_2951SFUM_2952SFUM_2953
SFLE373384 SFV_3050SFV_3046SFV_3047SFV_0984SFV_0983SFV_0982SFV_0981
SFLE198214 AAN44522.1AAN44518.1AAN44519.1AAN42604.1AAN42603.1AAN42602.1AAN42601.1
SERY405948 SACE_3061SACE_3059SACE_3062SACE_3059SACE_3062SACE_3061
SENT454169 SEHA_C3397SEHA_C3393SEHA_C3394SEHA_C1987SEHA_C1986SEHA_C1985SEHA_C1984
SENT321314 SCH_3091SCH_3087SCH_3088SCH_1784SCH_1783SCH_3088SCH_1782
SENT295319 SPA3018SPA3014SPA3015SPA1084SPA1085SPA1318SPA1317
SENT220341 STY3321STY3317STY3318STY1916STY1915STY1914STY1523
SENT209261 T3071T3067T3068T1087T1088T1089T1458
SDYS300267 SDY_3076SDY_3080SDY_3079SDY_0950SDY_0949SDY_0948SDY_0947
SBOY300268 SBO_2866SBO_2870SBO_2869SBO_2256SBO_2257SBO_2258SBO_2259
SBAL402882 SHEW185_1915SHEW185_1912SHEW185_1914SHEW185_1912SHEW185_1913SHEW185_1914SHEW185_1915
SBAL399599 SBAL195_1922SBAL195_1919SBAL195_1921SBAL195_1919SBAL195_1920SBAL195_1921SBAL195_1922
SAVE227882 SAV7366SAV7372SAV7367SAV7372SAV7367SAV7366
RSPH349102 RSPH17025_3376RSPH17025_3372RSPH17025_3375RSPH17025_3372RSPH17025_3373RSPH17025_3375RSPH17025_3376
RSPH349101 RSPH17029_2146RSPH17029_2150RSPH17029_2147RSPH17029_2150RSPH17029_2149RSPH17029_2147RSPH17029_2146
RSPH272943 RSP_0495RSP_0499RSP_0496RSP_0499RSP_0498RSP_0496RSP_0495
RSP357808 ROSERS_2319ROSERS_2322ROSERS_2320ROSERS_2322ROSERS_2321ROSERS_2320ROSERS_2319
RSP101510 RHA1_RO04603RHA1_RO00032RHA1_RO04604RHA1_RO04609RHA1_RO04604RHA1_RO04603
RRUB269796 RRU_A1161RRU_A1164RRU_A1162RRU_A1164RRU_A1163RRU_A1162RRU_A1161
RPAL316057 RPD_1162RPD_1165RPD_1163RPD_1165RPD_1164RPD_1163RPD_1162
RPAL316056 RPC_3772RPC_3769RPC_3771RPC_3769RPC_3770RPC_3771RPC_3772
RPAL316055 RPE_1231RPE_1234RPE_1232RPE_1234RPE_1233RPE_1232RPE_1231
RPAL258594 RPA0962RPA0965RPA0963RPA0965RPA0964RPA0963RPA0962
RMET266264 RMET_1298RMET_1293RMET_1297RMET_1293RMET_1295RMET_1297RMET_1298
RFER338969 RFER_4088RFER_4092RFER_4091RFER_4092RFER_0502RFER_4091RFER_4088
REUT381666 PHG001PHG005PHG002PHG005PHG003PHG002PHG001
RCAS383372 RCAS_3148RCAS_3145RCAS_3147RCAS_3145RCAS_3146RCAS_3147RCAS_3148
PTHE370438 PTH_1701PTH_1700PTH_1702PTH_1700PTH_1702PTH_1701
PNAP365044 PNAP_1975PNAP_1971PNAP_1974PNAP_1971PNAP_1972PNAP_1974PNAP_1975
PLUT319225 PLUT_1446PLUT_1449PLUT_1447PLUT_1449PLUT_1448PLUT_1447PLUT_1446
PISL384616 PISL_0200PISL_0196PISL_0197PISL_0196PISL_0197PISL_0200
PDIS435591 BDI_1811BDI_1814BDI_1812BDI_1814BDI_1813BDI_1812BDI_1811
PARS340102 PARS_1301PARS_1297PARS_1298PARS_1297PARS_1298PARS_1301
NSP387092 NIS_0963NIS_0966NIS_0964NIS_0966NIS_0965NIS_0964NIS_0963
NSP103690 ALL0688ALR1423ALR0766ALR1423ALR0766ALL0688
MSUC221988 MS2365MS2360MS2361MS2360MS2361MS2365
MSME246196 MSMEG_2720MSMEG_3927MSMEG_2263MSMEG_2264MSMEG_2263MSMEG_2720
MPET420662 MPE_A2827MPE_A2822MPE_A2826MPE_A2822MPE_A2824MPE_A2826MPE_A2827
MMAZ192952 MM2169MM2172MM2176MM3044MM2170MM2169
MMAG342108 AMB1650AMB1646AMB1647AMB1646AMB1647AMB1650
MCAP243233 MCA_0166MCA_0162MCA_0165MCA_0162MCA_0163MCA_0165MCA_0166
MBAR269797 MBAR_A1847MBAR_A1844MBAR_A1840MBAR_A0451MBAR_A1846MBAR_A1847
MAVI243243 MAV_2681MAV_2687MAV_2682MAV_2687MAV_2682MAV_2681
MACE188937 MA1141MA1144MA1147MA0976MA1142MA1141
LINT363253 LI0439LI0442LI0440LI0442LI0441LI0440LI0439
HPYL85963 JHP0574JHP0577JHP0575JHP0577JHP0576JHP0575JHP0574
HPYL357544 HPAG1_0614HPAG1_0617HPAG1_0615HPAG1_0617HPAG1_0616HPAG1_0615HPAG1_0614
HPY HP0631HP0634HP0632HP0634HP0633HP0632HP0631
HMOD498761 HM1_0205HM1_1481HM1_0206HM1_1481HM1_0207HM1_1479HM1_1478
HHEP235279 HH_0056HH_0059HH_0057HH_0059HH_0058HH_0057HH_0056
HACI382638 HAC_0744HAC_0747HAC_0745HAC_0747HAC_0746HAC_0745HAC_0744
GURA351605 GURA_1943GURA_0542GURA_1946GURA_0542GURA_0543GURA_0873GURA_0545
GSUL243231 GSU_0782GSU_0120GSU_0785GSU_0120GSU_0121GSU_0122GSU_0123
GMET269799 GMET_3332GMET_3329GMET_3331GMET_3329GMET_3330GMET_3331GMET_3332
FSP1855 FRANEAN1_3403FRANEAN1_3406FRANEAN1_3404FRANEAN1_3406FRANEAN1_3405FRANEAN1_3404FRANEAN1_3403
FSP106370 FRANCCI3_1941FRANCCI3_4495FRANCCI3_1076FRANCCI3_1075FRANCCI3_1076FRANCCI3_1077
FJOH376686 FJOH_3906FJOH_3909FJOH_3907FJOH_3909FJOH_3908FJOH_3907FJOH_3906
FALN326424 FRAAL2392FRAAL1828FRAAL1829FRAAL2391FRAAL1829FRAAL1830
EFER585054 EFER_2940EFER_2936EFER_2937EFER_1113EFER_1112EFER_1111EFER_1110
ECOO157 Z4351HYBDHYBCHYADHYACHYABHYAA
ECOL83334 ECS3882ECS3878ECS3879ECS1131ECS1130ECS1129ECS1128
ECOL585397 ECED1_3647ECED1_3643ECED1_3644ECED1_1059ECED1_1058ECED1_1057ECED1_1056
ECOL585057 ECIAI39_3493ECIAI39_3489ECIAI39_3490ECIAI39_2171ECIAI39_2172ECIAI39_2173ECIAI39_2174
ECOL585056 ECUMN_3481ECUMN_3477ECUMN_3478ECUMN_1165ECUMN_1164ECUMN_1163ECUMN_1162
ECOL585055 EC55989_3414EC55989_3410EC55989_3411EC55989_1083EC55989_1082EC55989_1081EC55989_1080
ECOL585035 ECS88_3379ECS88_3375ECS88_3376ECS88_0997ECS88_0996ECS88_0995ECS88_0994
ECOL585034 ECIAI1_3146ECIAI1_3142ECIAI1_3143ECIAI1_1016ECIAI1_1015ECIAI1_1014ECIAI1_1013
ECOL481805 ECOLC_0696ECOLC_0700ECOLC_0699ECOLC_2621ECOLC_2622ECOLC_0699ECOLC_2625
ECOL469008 ECBD_0741ECBD_0745ECBD_0744ECBD_2620ECBD_2621ECBD_2622ECBD_2623
ECOL439855 ECSMS35_3283ECSMS35_3279ECSMS35_3280ECSMS35_2142ECSMS35_2143ECSMS35_2144ECSMS35_2145
ECOL413997 ECB_00975ECB_02869ECB_02870ECB_00978ECB_00977ECB_00976ECB_00975
ECOL409438 ECSE_3282ECSE_3278ECSE_3279ECSE_1037ECSE_1036ECSE_1035ECSE_1034
ECOL405955 APECO1_3425APECO1_3429APECO1_3428APECO1_79APECO1_78APECO1_77APECO1_76
ECOL364106 UTI89_C3419UTI89_C3415UTI89_C3416UTI89_C1043UTI89_C1042UTI89_C1041UTI89_C1040
ECOL362663 ECP_3083ECP_3079ECP_3080ECP_0980ECP_0979ECP_0978ECP_0977
ECOL331111 ECE24377A_3466ECE24377A_3462ECE24377A_3463ECE24377A_1090ECE24377A_1089ECE24377A_1088ECE24377A_1087
ECOL316407 ECK2991:JW2965:B2997ECK2987:JW2961:B2993ECK2988:JW2962:B2994ECK0966:JW0957:B0975ECK0965:JW0956:B0974ECK0964:JW0955:B0973ECK0963:JW0954:B0972
ECOL199310 C3734C3730C3731C1116C1115C1114C1113
ECAR218491 ECA1225ECA1229ECA1228ECA1229ECA1228ECA1225
DVUL882 DVU_1921DVU_1923DVU_1922DVU_1923DVU_1922DVU_1921
DSP255470 CBDBA130CBDBA128CBDBA129CBDBA128CBDBA129CBDBA130
DSP216389 DEHABAV1_0257DEHABAV1_0259DEHABAV1_0258DEHABAV1_0259DEHABAV1_0258DEHABAV1_0257
DPSY177439 DP0574DP0581DP0575DP0581DP0576DP0575DP0574
DHAF138119 DSY2238DSY1596DSY2239DSY1596DSY2240DSY2239DSY2238
DETH243164 DET_0111DET_0109DET_0110DET_0109DET_0110DET_0111
DDES207559 DDE_2137DDE_2139DDE_2138DDE_2139DDE_2138DDE_2137
DARO159087 DARO_3974DARO_3970DARO_3971DARO_3986DARO_3987DARO_3988DARO_3989
CSP501479 CSE45_3039CSE45_3035CSE45_3038CSE45_3035CSE45_3036CSE45_3038CSE45_3039
CJEJ407148 C8J_1211C8J_1208C8J_1210C8J_1208C8J_1209C8J_1210C8J_1211
CJEJ360109 JJD26997_0458JJD26997_0462JJD26997_0459JJD26997_0462JJD26997_0460JJD26997_0459JJD26997_0458
CJEJ354242 CJJ81176_1283CJJ81176_1280CJJ81176_1282CJJ81176_1280CJJ81176_1281CJJ81176_1282CJJ81176_1283
CJEJ195099 CJE_1403CJE_1400CJE_1402CJE_1400CJE_1401CJE_1402CJE_1403
CJEJ192222 CJ1267CCJ1264CCJ1266CCJ1264CCJ1265CCJ1266CCJ1267C
CHYD246194 CHY_1546CHY_1543CHY_1545CHY_1543CHY_1544CHY_1545CHY_1546
CHOM360107 CHAB381_0861CHAB381_0864CHAB381_0862CHAB381_0864CHAB381_0863CHAB381_0862CHAB381_0861
CFET360106 CFF8240_0940CFF8240_0937CFF8240_0939CFF8240_0937CFF8240_0938CFF8240_0939CFF8240_0940
CDIP257309 DIP0672DIP0675DIP0673DIP0675DIP0674DIP0673DIP0672
CDES477974 DAUD_1041DAUD_1650DAUD_1042DAUD_1650DAUD_1042DAUD_1041
CCUR360105 CCV52592_1903CCV52592_1900CCV52592_1902CCV52592_1900CCV52592_1901CCV52592_1902CCV52592_1903
CCON360104 CCC13826_0101CCC13826_0098CCC13826_0100CCC13826_0098CCC13826_0099CCC13826_0100CCC13826_0101
BVIE269482 BCEP1808_5931BCEP1808_5934BCEP1808_5932BCEP1808_5934BCEP1808_5933BCEP1808_5932BCEP1808_5931
BSP376 BRADO1684BRADO1687BRADO1685BRADO1687BRADO1686BRADO1685BRADO1684
BJAP224911 BLL6942BLL6939BLR1721BLL6939BLL6940BLR1721BLL6942
ASP62928 AZO3786AZO3792AZO3787AZO3792AZO3788AZO3787AZO3786
ASAL382245 ASA_1788ASA_1792ASA_1791ASA_1792ASA_1791ASA_1788
APLE434271 APJL_1349APJL_1353APJL_1352APJL_1353APJL_1352APJL_1349
APLE416269 APL_1331APL_1335APL_1334APL_1335APL_1334APL_1331
AHYD196024 AHA_2526AHA_2522AHA_2523AHA_2522AHA_2523AHA_2526
AFUL224325 AF_1381AF_1378AF_1380AF_1378AF_1380AF_1381
AFER243159 AFE_3050AFE_3052AFE_3047AFE_3052AFE_0673AFE_3047AFE_3050
AEHR187272 MLG_2029MLG_2026MLG_2028MLG_2026MLG_2027MLG_2028MLG_2029
ADEH290397 ADEH_0481ADEH_0477ADEH_0478ADEH_0477ADEH_0478ADEH_0481
ACRY349163 ACRY_0338ACRY_0335ACRY_0337ACRY_0335ACRY_0336ACRY_0337ACRY_0338
ACAU438753 AZC_0598AZC_0601AZC_0599AZC_0601AZC_0600AZC_0599AZC_0598
ABUT367737 ABU_1435ABU_1432ABU_1427ABU_1432ABU_1426ABU_1434ABU_1428
ABAC204669 ACID345_4237ACID345_4241ACID345_4240ACID345_4241ACID345_4240ACID345_4237
AAEO224324 AQ_965AQ_667AQ_960AQ_667AQ_665AQ_960AQ_660


Organism features enriched in list (features available for 132 out of the 137 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Filaments 0.0096282610
Disease:Dysentery 0.000123266
GC_Content_Range4:0-40 8.487e-1020213
GC_Content_Range4:40-60 1.994e-776224
GC_Content_Range7:0-30 0.0000494147
GC_Content_Range7:30-40 0.000011219166
GC_Content_Range7:50-60 2.524e-847107
Genome_Size_Range5:0-2 0.000208520155
Genome_Size_Range5:2-4 0.000156928197
Genome_Size_Range5:4-6 2.198e-1072184
Genome_Size_Range9:1-2 0.009134120128
Genome_Size_Range9:3-4 0.0046671977
Genome_Size_Range9:4-5 0.00031273596
Genome_Size_Range9:5-6 4.866e-63788
Gram_Stain:Gram_Neg 7.170e-10105333
Gram_Stain:Gram_Pos 2.735e-713150
Habitat:Multiple 0.003874952178
Motility:No 0.000398120151
Motility:Yes 7.853e-989267
Oxygen_Req:Aerobic 5.974e-622185
Oxygen_Req:Facultative 5.183e-667201
Oxygen_Req:Microaerophilic 6.421e-71418
Pathogenic_in:Animal 0.0046230766
Shape:Coccus 2.957e-6482
Shape:Spiral 0.00001181934



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 426
Effective number of orgs (counting one per cluster within 468 clusters): 315

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM40
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317580
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329530
YPES386656 ncbi Yersinia pestis Pestoides F0
YPES377628 ncbi Yersinia pestis Nepal5160
YPES360102 ncbi Yersinia pestis Antiqua0
YPES349746 ncbi Yersinia pestis Angola0
YPES214092 ncbi Yersinia pestis CO920
YPES187410 ncbi Yersinia pestis KIM 100
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A0
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110180
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103310
XFAS405440 ncbi Xylella fastidiosa M120
XFAS183190 ncbi Xylella fastidiosa Temecula10
XFAS160492 ncbi Xylella fastidiosa 9a5c0
XCAM487884 Xanthomonas campestris pv. paulliniae0
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-100
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80040
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339130
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3060
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
VVUL216895 ncbi Vibrio vulnificus CMCP60
VVUL196600 ncbi Vibrio vulnificus YJ0160
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106330
VFIS312309 ncbi Vibrio fischeri ES1140
VEIS391735 ncbi Verminephrobacter eiseniae EF01-21
VCHO345073 ncbi Vibrio cholerae O3950
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169610
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTUR377629 ncbi Teredinibacter turnerae T79010
TTHE300852 ncbi Thermus thermophilus HB80
TTHE262724 ncbi Thermus thermophilus HB270
TSP28240 Thermotoga sp.0
TSP1755 Thermoanaerobacter sp.0
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332230
TPET390874 ncbi Thermotoga petrophila RKU-10
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TMAR243274 ncbi Thermotoga maritima MSB80
TLET416591 ncbi Thermotoga lettingae TMO0
TFUS269800 ncbi Thermobifida fusca YX0
TELO197221 ncbi Thermosynechococcus elongatus BP-10
TDEN243275 ncbi Treponema denticola ATCC 354050
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen0
STRO369723 ncbi Salinispora tropica CNB-4400
STOK273063 ncbi Sulfolobus tokodaii 70
STHE322159 ncbi Streptococcus thermophilus LMD-90
STHE299768 ncbi Streptococcus thermophilus CNRZ10660
STHE292459 ncbi Symbiobacterium thermophilum IAM 148630
STHE264199 ncbi Streptococcus thermophilus LMG 183110
SSUI391296 ncbi Streptococcus suis 98HAH330
SSUI391295 ncbi Streptococcus suis 05ZYH330
SSP84588 ncbi Synechococcus sp. WH 81020
SSP64471 ncbi Synechococcus sp. CC93110
SSP644076 Silicibacter sp. TrichCH4B0
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)0
SSP321327 ncbi Synechococcus sp. JA-3-3Ab0
SSP292414 ncbi Ruegeria sp. TM10400
SSP1131 Synechococcus sp. CC96050
SSOL273057 ncbi Sulfolobus solfataricus P20
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153050
SRUB309807 ncbi Salinibacter ruber DSM 138550
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370552 ncbi Streptococcus pyogenes MGAS102700
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103940
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SPNE488221 ncbi Streptococcus pneumoniae 705850
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-60
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-140
SPNE171101 ncbi Streptococcus pneumoniae R60
SPNE170187 ncbi Streptococcus pneumoniae G540
SPNE1313 Streptococcus pneumoniae0
SMUT210007 ncbi Streptococcus mutans UA1590
SMEL266834 ncbi Sinorhizobium meliloti 10210
SMED366394 ncbi Sinorhizobium medicae WSM4190
SLAC55218 Ruegeria lacuscaerulensis0
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14350
SGOR29390 Streptococcus gordonii Challis0
SGLO343509 ncbi Sodalis glossinidius morsitans0
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122280
SEPI176279 ncbi Staphylococcus epidermidis RP62A0
SDEN318161 ncbi Shewanella denitrificans OS2170
SDEG203122 ncbi Saccharophagus degradans 2-400
SCO ncbi Streptomyces coelicolor A3(2)0
SAUR93062 ncbi Staphylococcus aureus aureus COL0
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83250
SAUR426430 ncbi Staphylococcus aureus aureus Newman0
SAUR418127 ncbi Staphylococcus aureus aureus Mu30
SAUR367830 Staphylococcus aureus aureus USA3000
SAUR359787 ncbi Staphylococcus aureus aureus JH10
SAUR359786 ncbi Staphylococcus aureus aureus JH90
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4760
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2520
SAUR273036 ncbi Staphylococcus aureus RF1220
SAUR196620 ncbi Staphylococcus aureus aureus MW20
SAUR158879 ncbi Staphylococcus aureus aureus N3150
SAUR158878 ncbi Staphylococcus aureus aureus Mu500
SARE391037 ncbi Salinispora arenicola CNS-2050
SAGA211110 ncbi Streptococcus agalactiae NEM3160
SAGA208435 ncbi Streptococcus agalactiae 2603V/R0
SAGA205921 ncbi Streptococcus agalactiae A9090
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99410
RTYP257363 ncbi Rickettsia typhi Wilmington0
RSOL267608 ncbi Ralstonia solanacearum GMI10000
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332090
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RPOM246200 ncbi Ruegeria pomeroyi DSS-30
RPAL316058 ncbi Rhodopseudomonas palustris HaA20
RMAS416276 ncbi Rickettsia massiliae MTU50
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38410
RFEL315456 ncbi Rickettsia felis URRWXCal20
REUT264198 ncbi Ralstonia eutropha JMP1340
RETL347834 ncbi Rhizobium etli CFN 420
RDEN375451 ncbi Roseobacter denitrificans OCh 1140
RCON272944 ncbi Rickettsia conorii Malish 70
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RALB246199 Ruminococcus albus 80
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97900
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30000
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a0
PSTU379731 ncbi Pseudomonas stutzeri A15010
PSP56811 Psychrobacter sp.0
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-10
PSP296591 ncbi Polaromonas sp. JS6661
PSP117 Pirellula sp.0
PRUM264731 ncbi Prevotella ruminicola 230
PPUT76869 ncbi Pseudomonas putida GB-10
PPUT351746 ncbi Pseudomonas putida F10
PPUT160488 ncbi Pseudomonas putida KT24400
PPRO298386 ncbi Photobacterium profundum SS91
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257450
PMUL272843 ncbi Pasteurella multocida multocida Pm700
PMOB403833 ncbi Petrotoga mobilis SJ950
PMEN399739 ncbi Pseudomonas mendocina ymp0
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74547 ncbi Prochlorococcus marinus MIT 93130
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR59920 ncbi Prochlorococcus marinus NATL2A0
PMAR167555 ncbi Prochlorococcus marinus NATL1A0
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13750
PMAR146891 ncbi Prochlorococcus marinus AS96010
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO10
PINT246198 Prevotella intermedia 170
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1250
PGIN242619 ncbi Porphyromonas gingivalis W830
PFLU220664 ncbi Pseudomonas fluorescens Pf-50
PFLU216595 ncbi Pseudomonas fluorescens SBW250
PFLU205922 ncbi Pseudomonas fluorescens Pf0-10
PENT384676 ncbi Pseudomonas entomophila L480
PCRY335284 ncbi Psychrobacter cryohalolentis K50
PCAR338963 ncbi Pelobacter carbinolicus DSM 23800
PATL342610 ncbi Pseudoalteromonas atlantica T6c0
PAST100379 Onion yellows phytoplasma0
PARC259536 ncbi Psychrobacter arcticus 273-40
PAER208964 ncbi Pseudomonas aeruginosa PAO10
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA140
PAER178306 ncbi Pyrobaculum aerophilum IM20
PACN267747 ncbi Propionibacterium acnes KPA1712020
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
OIHE221109 ncbi Oceanobacillus iheyensis HTE8310
OCAR504832 ncbi Oligotropha carboxidovorans OM50
OANT439375 ncbi Ochrobactrum anthropi ATCC 491880
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2550
NSP35761 Nocardioides sp.0
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
NOCE323261 ncbi Nitrosococcus oceani ATCC 197070
NMEN374833 ncbi Neisseria meningitidis 0534420
NMEN272831 ncbi Neisseria meningitidis FAM180
NMEN122587 ncbi Neisseria meningitidis Z24910
NMEN122586 ncbi Neisseria meningitidis MC580
NHAM323097 ncbi Nitrobacter hamburgensis X140
NGON242231 ncbi Neisseria gonorrhoeae FA 10900
NFAR247156 ncbi Nocardia farcinica IFM 101520
NEUT335283 ncbi Nitrosomonas eutropha C910
NEUR228410 ncbi Nitrosomonas europaea ATCC 197180
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124440
MXAN246197 ncbi Myxococcus xanthus DK 16220
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra0
MTUB336982 ncbi Mycobacterium tuberculosis F110
MTHE349307 ncbi Methanosaeta thermophila PT0
MTBRV ncbi Mycobacterium tuberculosis H37Rv0
MTBCDC ncbi Mycobacterium tuberculosis CDC15510
MSYN262723 ncbi Mycoplasma synoviae 530
MSP409 Methylobacterium sp.0
MSP400668 ncbi Marinomonas sp. MWYL10
MSP266779 ncbi Chelativorans sp. BNC10
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAR394221 ncbi Maricaulis maris MCS100
MLOT266835 ncbi Mesorhizobium loti MAFF3030990
MLEP272631 ncbi Mycobacterium leprae TN0
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK0
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MFLA265072 ncbi Methylobacillus flagellatus KT0
MEXT419610 ncbi Methylobacterium extorquens PA10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P20
MBOV233413 ncbi Mycobacterium bovis AF2122/970
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAQU351348 ncbi Marinobacter aquaeolei VT80
MABS561007 ncbi Mycobacterium abscessus ATCC 199770
LXYL281090 ncbi Leifsonia xyli xyli CTCB070
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53340
LSPH444177 ncbi Lysinibacillus sphaericus C3-410
LSAK314315 ncbi Lactobacillus sakei sakei 23K0
LREU557436 ncbi Lactobacillus reuteri DSM 200160
LPLA220668 ncbi Lactobacillus plantarum WCFS10
LMON265669 ncbi Listeria monocytogenes 4b F23650
LMON169963 ncbi Listeria monocytogenes EGD-e0
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82930
LLAC272623 ncbi Lactococcus lactis lactis Il14030
LLAC272622 ncbi Lactococcus lactis cremoris SK110
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1300
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566010
LINN272626 ncbi Listeria innocua Clip112620
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LCAS321967 ncbi Lactobacillus casei ATCC 3340
LBRE387344 ncbi Lactobacillus brevis ATCC 3670
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1970
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5500
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)0
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)0
LACI272621 ncbi Lactobacillus acidophilus NCFM0
KRAD266940 ncbi Kineococcus radiotolerans SRS302160
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785781
JSP375286 ncbi Janthinobacterium sp. Marseille0
JSP290400 ncbi Jannaschia sp. CCS10
ILOI283942 ncbi Idiomarina loihiensis L2TR0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSOM228400 ncbi Haemophilus somnus 23360
HSOM205914 ncbi Haemophilus somnus 129PT0
HSAL478009 ncbi Halobacterium salinarum R10
HNEP81032 Hyphomonas neptunium0
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMAR272569 ncbi Haloarcula marismortui ATCC 430490
HINF71421 ncbi Haemophilus influenzae Rd KW200
HINF374930 ncbi Haemophilus influenzae PittEE0
HINF281310 ncbi Haemophilus influenzae 86-028NP0
HHAL349124 ncbi Halorhodospira halophila SL10
HDUC233412 ncbi Haemophilus ducreyi 35000HP0
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237790
HARS204773 ncbi Herminiimonas arsenicoxydans0
GVIO251221 ncbi Gloeobacter violaceus PCC 74210
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-20
GOXY290633 ncbi Gluconobacter oxydans 621H0
GKAU235909 ncbi Geobacillus kaustophilus HTA4260
GFOR411154 ncbi Gramella forsetii KT08030
GBET391165 ncbi Granulibacter bethesdensis CGDNIH10
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-000
FTUL418136 ncbi Francisella tularensis tularensis WY96-34180
FTUL401614 ncbi Francisella novicida U1120
FTUL393115 ncbi Francisella tularensis tularensis FSC1980
FTUL393011 ncbi Francisella tularensis holarctica OSU180
FTUL351581 Francisella tularensis holarctica FSC2000
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S850
FRANT ncbi Francisella tularensis tularensis SCHU S40
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255860
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B10
FMAG334413 ncbi Finegoldia magna ATCC 293280
ESP42895 Enterobacter sp.1
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ELIT314225 ncbi Erythrobacter litoralis HTCC25940
EFAE226185 ncbi Enterococcus faecalis V5830
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DSHI398580 ncbi Dinoroseobacter shibae DFL 120
DRED349161 ncbi Desulfotomaculum reducens MI-10
DRAD243230 ncbi Deinococcus radiodurans R10
DOLE96561 ncbi Desulfococcus oleovorans Hxd30
DNOD246195 ncbi Dichelobacter nodosus VCS1703A0
DGEO319795 ncbi Deinococcus geothermalis DSM 113000
CVIO243365 ncbi Chromobacterium violaceum ATCC 124720
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA0
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTET212717 ncbi Clostridium tetani E880
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CSP78 Caulobacter sp.0
CSAL290398 ncbi Chromohalobacter salexigens DSM 30430
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)0
CPSY167879 ncbi Colwellia psychrerythraea 34H0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE250
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPHY357809 ncbi Clostridium phytofermentans ISDg0
CPER289380 ncbi Clostridium perfringens SM1010
CPER195103 ncbi Clostridium perfringens ATCC 131240
CPER195102 ncbi Clostridium perfringens 130
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10620
CNOV386415 ncbi Clostridium novyi NT0
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3820
CMIC31964 ncbi Clavibacter michiganensis sepedonicus0
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKLU431943 ncbi Clostridium kluyveri DSM 5550
CJEI306537 ncbi Corynebacterium jeikeium K4110
CJAP155077 Cellvibrio japonicus0
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334060
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130320
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CEFF196164 ncbi Corynebacterium efficiens YS-3140
CDIF272563 ncbi Clostridium difficile 6300
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1110
CBUR360115 ncbi Coxiella burnetii RSA 3310
CBUR227377 ncbi Coxiella burnetii RSA 4930
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6570
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN0
CBLO203907 ncbi Candidatus Blochmannia floridanus0
CAULO ncbi Caulobacter crescentus CB150
CABO218497 ncbi Chlamydophila abortus S26/30
BWEI315730 ncbi Bacillus weihenstephanensis KBAB40
BTUR314724 ncbi Borrelia turicatae 91E1350
BTRI382640 ncbi Bartonella tribocorum CIP 1054760
BTHU412694 ncbi Bacillus thuringiensis Al Hakam0
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-270
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54820
BTHA271848 ncbi Burkholderia thailandensis E2640
BSUI470137 ncbi Brucella suis ATCC 234450
BSUI204722 ncbi Brucella suis 13300
BSUB ncbi Bacillus subtilis subtilis 1680
BSP36773 Burkholderia sp.0
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)0
BQUI283165 ncbi Bartonella quintana Toulouse0
BPUM315750 ncbi Bacillus pumilus SAFR-0320
BPSE320373 ncbi Burkholderia pseudomallei 6680
BPSE320372 ncbi Burkholderia pseudomallei 1710b0
BPSE272560 ncbi Burkholderia pseudomallei K962430
BPET94624 Bordetella petrii0
BPER257313 ncbi Bordetella pertussis Tohama I0
BPAR257311 ncbi Bordetella parapertussis 128220
BOVI236 Brucella ovis0
BMEL359391 ncbi Brucella melitensis biovar Abortus 23080
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M0
BMAL320389 ncbi Burkholderia mallei NCTC 102470
BMAL320388 ncbi Burkholderia mallei SAVP10
BMAL243160 ncbi Burkholderia mallei ATCC 233440
BLON206672 ncbi Bifidobacterium longum NCC27050
BLIC279010 ncbi Bacillus licheniformis ATCC 145800
BHER314723 ncbi Borrelia hermsii DAH0
BHEN283166 ncbi Bartonella henselae Houston-10
BHAL272558 ncbi Bacillus halodurans C-1250
BGAR290434 ncbi Borrelia garinii PBi0
BFRA295405 ncbi Bacteroides fragilis YCH460
BFRA272559 ncbi Bacteroides fragilis NCTC 93430
BCLA66692 ncbi Bacillus clausii KSM-K160
BCIC186490 Candidatus Baumannia cicadellinicola0
BCER572264 ncbi Bacillus cereus 03BB1020
BCER405917 Bacillus cereus W0
BCER315749 ncbi Bacillus cytotoxicus NVH 391-980
BCER288681 ncbi Bacillus cereus E33L0
BCER226900 ncbi Bacillus cereus ATCC 145790
BCEN331272 ncbi Burkholderia cenocepacia HI24240
BCEN331271 ncbi Burkholderia cenocepacia AU 10540
BCAN483179 ncbi Brucella canis ATCC 233650
BBUR224326 ncbi Borrelia burgdorferi B310
BBRO257310 ncbi Bordetella bronchiseptica RB500
BBAC360095 ncbi Bartonella bacilliformis KC5830
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1000
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)0
BANT592021 ncbi Bacillus anthracis A02480
BANT568206 ncbi Bacillus anthracis CDC 6840
BANT261594 ncbi Bacillus anthracis Ames Ancestor0
BANT260799 ncbi Bacillus anthracis Sterne0
BAMY326423 ncbi Bacillus amyloliquefaciens FZB420
BAMB398577 ncbi Burkholderia ambifaria MC40-61
BAMB339670 ncbi Burkholderia ambifaria AMMD0
BAFZ390236 ncbi Borrelia afzelii PKo0
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9410
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP76114 ncbi Aromatoleum aromaticum EbN10
ASP62977 ncbi Acinetobacter sp. ADP10
ASP232721 ncbi Acidovorax sp. JS420
ASP1667 Arthrobacter sp.0
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K10
AORE350688 ncbi Alkaliphilus oremlandii OhILAs0
ANAE240017 Actinomyces oris MG10
AMET293826 ncbi Alkaliphilus metalliredigens QYMF0
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
ABOR393595 ncbi Alcanivorax borkumensis SK20
ABAU360910 ncbi Bordetella avium 197N0
AAVE397945 ncbi Acidovorax citrulli AAC00-10
AAUR290340 ncbi Arthrobacter aurescens TC10


Names of the homologs of the genes in the group in each of these orgs
  G7554   EG11802   EG11801   EG10471   EG10470   EG10469   EG10468   
ZMOB264203
YPSE349747
YPSE273123
YPES386656
YPES377628
YPES360102
YPES349746
YPES214092
YPES187410
XORY360094
XORY342109
XORY291331
XFAS405440
XFAS183190
XFAS160492
XCAM487884
XCAM316273
XCAM314565
XCAM190485
XAXO190486
WPIP955
WPIP80849
VVUL216895
VVUL196600
VPAR223926
VFIS312309
VEIS391735 VEIS_1276
VCHO345073
VCHO
UURE95667
UURE95664
UPAR505682
TWHI218496
TWHI203267
TVOL273116
TTUR377629
TTHE300852
TTHE262724
TSP28240
TSP1755
TPSE340099
TPET390874
TPAL243276
TMAR243274
TLET416591
TFUS269800
TELO197221
TDEN243275
TACI273075
SWOL335541
STRO369723
STOK273063
STHE322159
STHE299768
STHE292459
STHE264199
SSUI391296
SSUI391295
SSP84588
SSP64471
SSP644076
SSP321332
SSP321327
SSP292414
SSP1131
SSOL273057
SSAP342451
SRUB309807
SPYO370554
SPYO370553
SPYO370552
SPYO370551
SPYO319701
SPYO293653
SPYO286636
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SPNE488221
SPNE487214
SPNE487213
SPNE171101
SPNE170187
SPNE1313
SMUT210007
SMEL266834
SMED366394
SLAC55218
SHAE279808
SGOR29390
SGLO343509
SEPI176280
SEPI176279
SDEN318161
SDEG203122
SCO
SAUR93062
SAUR93061
SAUR426430
SAUR418127
SAUR367830
SAUR359787
SAUR359786
SAUR282459
SAUR282458
SAUR273036
SAUR196620
SAUR158879
SAUR158878
SARE391037
SAGA211110
SAGA208435
SAGA205921
SACI330779
RXYL266117
RTYP257363
RSOL267608
RSAL288705
RRIC452659
RRIC392021
RPRO272947
RPOM246200
RPAL316058
RMAS416276
RLEG216596
RFEL315456
REUT264198
RETL347834
RDEN375451
RCON272944
RCAN293613
RBEL391896
RBEL336407
RALB246199
RAKA293614
PTOR263820
PSYR223283
PSYR205918
PSTU379731
PSP56811
PSP312153
PSP296591 BPRO_0268
PSP117
PRUM264731
PPUT76869
PPUT351746
PPUT160488
PPRO298386 PBPRB0668
PPEN278197
PMUL272843
PMOB403833
PMEN399739
PMAR93060
PMAR74547
PMAR74546
PMAR59920
PMAR167555
PMAR167546
PMAR167542
PMAR167540
PMAR167539
PMAR146891
PLUM243265
PINT246198
PHAL326442
PGIN242619
PFLU220664
PFLU216595
PFLU205922
PENT384676
PCRY335284
PCAR338963
PATL342610
PAST100379
PARC259536
PAER208964
PAER208963
PAER178306
PACN267747
OTSU357244
OIHE221109
OCAR504832
OANT439375
NWIN323098
NSP35761
NSEN222891
NPHA348780
NOCE323261
NMEN374833
NMEN272831
NMEN122587
NMEN122586
NHAM323097
NGON242231
NFAR247156
NEUT335283
NEUR228410
NARO279238
MXAN246197
MTUB419947
MTUB336982
MTHE349307
MTBRV
MTBCDC
MSYN262723
MSP409
MSP400668
MSP266779
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAR394221
MLOT266835
MLEP272631
MHYO295358
MHYO262722
MHYO262719
MGIL350054
MGEN243273
MFLO265311
MFLA265072
MEXT419610
MCAP340047
MBUR259564
MBOV410289
MBOV233413
MART243272
MAQU351348
MABS561007
LXYL281090
LWEL386043
LSPH444177
LSAK314315
LREU557436
LPLA220668
LMON265669
LMON169963
LMES203120
LLAC272623
LLAC272622
LJOH257314
LINT267671
LINT189518
LINN272626
LHEL405566
LGAS324831
LDEL390333
LDEL321956
LCAS321967
LBRE387344
LBOR355277
LBOR355276
LBIF456481
LBIF355278
LACI272621
KRAD266940
KPNE272620 GKPORF_B2391
JSP375286
JSP290400
ILOI283942
HWAL362976
HSP64091
HSOM228400
HSOM205914
HSAL478009
HNEP81032
HMUK485914
HMAR272569
HINF71421
HINF374930
HINF281310
HHAL349124
HDUC233412
HAUR316274
HARS204773
GVIO251221
GTHE420246
GOXY290633
GKAU235909
GFOR411154
GBET391165
FTUL458234
FTUL418136
FTUL401614
FTUL393115
FTUL393011
FTUL351581
FSUC59374
FRANT
FNUC190304
FNOD381764
FMAG334413
ESP42895 ENT638_3194
ERUM302409
ERUM254945
ELIT314225
EFAE226185
ECHA205920
ECAN269484
DSHI398580
DRED349161
DRAD243230
DOLE96561
DNOD246195
DGEO319795
CVIO243365
CVES412965
CTRA471473
CTRA471472
CTET212717
CSUL444179
CSP78
CSAL290398
CRUT413404
CPSY167879
CPRO264201
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPHY357809
CPER289380
CPER195103
CPER195102
CPEL335992
CNOV386415
CMUR243161
CMIC443906
CMIC31964
CMAQ397948
CKLU431943
CJEI306537
CJAP155077
CHUT269798
CGLU196627
CFEL264202
CEFF196164
CDIF272563
CCAV227941
CBUR434922
CBUR360115
CBUR227377
CBOT515621
CBLO291272
CBLO203907
CAULO
CABO218497
BWEI315730
BTUR314724
BTRI382640
BTHU412694
BTHU281309
BTHE226186
BTHA271848
BSUI470137
BSUI204722
BSUB
BSP36773
BSP107806
BQUI283165
BPUM315750
BPSE320373
BPSE320372
BPSE272560
BPET94624
BPER257313
BPAR257311
BOVI236
BMEL359391
BMEL224914
BMAL320389
BMAL320388
BMAL243160
BLON206672
BLIC279010
BHER314723
BHEN283166
BHAL272558
BGAR290434
BFRA295405
BFRA272559
BCLA66692
BCIC186490
BCER572264
BCER405917
BCER315749
BCER288681
BCER226900
BCEN331272
BCEN331271
BCAN483179
BBUR224326
BBRO257310
BBAC360095
BBAC264462
BAPH372461
BAPH198804
BANT592021
BANT568206
BANT261594
BANT260799
BAMY326423
BAMB398577 BAMMC406_6225
BAMB339670
BAFZ390236
BABO262698
AYEL322098
AURANTIMONAS
ASP76114
ASP62977
ASP232721
ASP1667
APHA212042
APER272557
AORE350688
ANAE240017
AMET293826
AMAR234826
ALAI441768
ABOR393595
ABAU360910
AAVE397945
AAUR290340


Organism features enriched in list (features available for 392 out of the 426 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Aggregates 0.000736619
Arrangment:Clusters 0.00104461717
GC_Content_Range4:0-40 1.051e-7171213
GC_Content_Range4:40-60 4.758e-8121224
GC_Content_Range7:30-40 3.389e-6134166
GC_Content_Range7:50-60 2.055e-847107
Genome_Size_Range5:0-2 0.0048554116155
Genome_Size_Range5:2-4 0.0018034147197
Genome_Size_Range5:4-6 3.784e-6100184
Genome_Size_Range9:0-1 0.00001632727
Genome_Size_Range9:2-3 0.006694291120
Genome_Size_Range9:4-5 0.00437635496
Genome_Size_Range9:5-6 0.00061764688
Genome_Size_Range9:8-10 0.006260829
Gram_Stain:Gram_Neg 0.0032662210333
Gram_Stain:Gram_Pos 2.032e-6123150
Habitat:Aquatic 0.00266465091
Habitat:Host-associated 0.0000996158206
Motility:No 0.0010409116151
Motility:Yes 5.097e-10145267
Optimal_temp.:30-37 0.00069211818
Optimal_temp.:35-37 0.00537281313
Oxygen_Req:Aerobic 2.231e-6148185
Oxygen_Req:Anaerobic 1.465e-942102
Oxygen_Req:Microaerophilic 0.0000809418
Pathogenic_in:Animal 0.00106095566
Pathogenic_in:Human 0.0000903163213
Pathogenic_in:No 0.0000141129226
Salinity:Non-halophilic 0.007415381106
Shape:Coccus 0.00012776982
Shape:Filament 0.005574017
Shape:Irregular_coccus 2.373e-6217
Shape:Spiral 0.00240491534
Temp._range:Hyperthermophilic 0.0009048823



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ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 32
Effective number of orgs (counting one per cluster within 468 clusters): 28

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
HACI382638 ncbi Helicobacter acinonychis Sheeba 0.00007045077
HPYL357544 ncbi Helicobacter pylori HPAG1 0.00008535217
HPY ncbi Helicobacter pylori 26695 0.00008535217
HPYL85963 ncbi Helicobacter pylori J99 0.00009125267
CHOM360107 ncbi Campylobacter hominis ATCC BAA-381 0.00026786137
PISL384616 ncbi Pyrobaculum islandicum DSM 4184 0.00027013226
HHEP235279 ncbi Helicobacter hepaticus ATCC 51449 0.00040446507
CJEJ195099 ncbi Campylobacter jejuni RM1221 0.00051646737
CJEJ360109 ncbi Campylobacter jejuni doylei 269.97 0.00052726757
PARS340102 ncbi Pyrobaculum arsenaticum DSM 13514 0.00053553616
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 11168 0.00060296887
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-00 0.00061546907
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-176 0.00066066977
CJEJ407148 ncbi Campylobacter jejuni jejuni 81116 0.00076737127
CFET360106 ncbi Campylobacter fetus fetus 82-40 0.00083817217
CCON360104 ncbi Campylobacter concisus 13826 0.00107517477
CCUR360105 ncbi Campylobacter curvus 525.92 0.00121377607
TDEN326298 ncbi Sulfurimonas denitrificans DSM 1251 0.00125937647
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 13129 0.00169507977
NSP387092 ncbi Nitratiruptor sp. SB155-2 0.00180248047
AAEO224324 ncbi Aquifex aeolicus VF5 0.00185028077
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I 0.00235272365
ABUT367737 ncbi Arcobacter butzleri RM4018 0.00298858647
SSP387093 ncbi Sulfurovum sp. NBC37-1 0.00313748707
WSUC273121 ncbi Wolinella succinogenes DSM 1740 0.00321428737
PLUT319225 ncbi Chlorobium luteolum DSM 273 0.00353778857
AFUL224325 ncbi Archaeoglobus fulgidus DSM 4304 0.00356054966
HBUT415426 ncbi Hyperthermus butylicus DSM 5456 0.00549292805
UMET351160 ncbi uncultured methanogenic archaeon RC-I 0.00771475656
DETH243164 ncbi Dehalococcoides ethenogenes 195 0.00847225746
PDIS435591 ncbi Parabacteroides distasonis ATCC 8503 0.008700510067
DSP216389 ncbi Dehalococcoides sp. BAV1 0.00948075856


Names of the homologs of the genes in the group in each of these orgs
  G7554   EG11802   EG11801   EG10471   EG10470   EG10469   EG10468   
HACI382638 HAC_0744HAC_0747HAC_0745HAC_0747HAC_0746HAC_0745HAC_0744
HPYL357544 HPAG1_0614HPAG1_0617HPAG1_0615HPAG1_0617HPAG1_0616HPAG1_0615HPAG1_0614
HPY HP0631HP0634HP0632HP0634HP0633HP0632HP0631
HPYL85963 JHP0574JHP0577JHP0575JHP0577JHP0576JHP0575JHP0574
CHOM360107 CHAB381_0861CHAB381_0864CHAB381_0862CHAB381_0864CHAB381_0863CHAB381_0862CHAB381_0861
PISL384616 PISL_0200PISL_0196PISL_0197PISL_0196PISL_0197PISL_0200
HHEP235279 HH_0056HH_0059HH_0057HH_0059HH_0058HH_0057HH_0056
CJEJ195099 CJE_1403CJE_1400CJE_1402CJE_1400CJE_1401CJE_1402CJE_1403
CJEJ360109 JJD26997_0458JJD26997_0462JJD26997_0459JJD26997_0462JJD26997_0460JJD26997_0459JJD26997_0458
PARS340102 PARS_1301PARS_1297PARS_1298PARS_1297PARS_1298PARS_1301
CJEJ192222 CJ1267CCJ1264CCJ1266CCJ1264CCJ1265CCJ1266CCJ1267C
LINT363253 LI0439LI0442LI0440LI0442LI0441LI0440LI0439
CJEJ354242 CJJ81176_1283CJJ81176_1280CJJ81176_1282CJJ81176_1280CJJ81176_1281CJJ81176_1282CJJ81176_1283
CJEJ407148 C8J_1211C8J_1208C8J_1210C8J_1208C8J_1209C8J_1210C8J_1211
CFET360106 CFF8240_0940CFF8240_0937CFF8240_0939CFF8240_0937CFF8240_0938CFF8240_0939CFF8240_0940
CCON360104 CCC13826_0101CCC13826_0098CCC13826_0100CCC13826_0098CCC13826_0099CCC13826_0100CCC13826_0101
CCUR360105 CCV52592_1903CCV52592_1900CCV52592_1902CCV52592_1900CCV52592_1901CCV52592_1902CCV52592_1903
TDEN326298 TMDEN_1436TMDEN_1433TMDEN_1435TMDEN_1433TMDEN_1434TMDEN_1435TMDEN_1436
CDIP257309 DIP0672DIP0675DIP0673DIP0675DIP0674DIP0673DIP0672
NSP387092 NIS_0963NIS_0966NIS_0964NIS_0966NIS_0965NIS_0964NIS_0963
AAEO224324 AQ_965AQ_667AQ_960AQ_667AQ_665AQ_960AQ_660
IHOS453591 IGNI_1366IGNI_0504IGNI_1367IGNI_1367IGNI_1366
ABUT367737 ABU_1435ABU_1432ABU_1427ABU_1432ABU_1426ABU_1434ABU_1428
SSP387093 SUN_1663SUN_1642SUN_1662SUN_1642SUN_1661SUN_1662SUN_1663
WSUC273121 WS1687WS1684WS1686WS1684WS1685WS1686WS1687
PLUT319225 PLUT_1446PLUT_1449PLUT_1447PLUT_1449PLUT_1448PLUT_1447PLUT_1446
AFUL224325 AF_1381AF_1378AF_1380AF_1378AF_1380AF_1381
HBUT415426 HBUT_1371HBUT_1372HBUT_1368HBUT_1368HBUT_1371
UMET351160 RCIX880RCIX1854RCIX882RCIA172RCIX882RCIX880
DETH243164 DET_0111DET_0109DET_0110DET_0109DET_0110DET_0111
PDIS435591 BDI_1811BDI_1814BDI_1812BDI_1814BDI_1813BDI_1812BDI_1811
DSP216389 DEHABAV1_0257DEHABAV1_0259DEHABAV1_0258DEHABAV1_0259DEHABAV1_0258DEHABAV1_0257


Organism features enriched in list (features available for 32 out of the 32 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Disease:Food_poisoning 0.000741649
Disease:Gastric_inflammation_and_peptic_ulcer_disease 0.002923622
Endospores:No 0.008739618211
GC_Content_Range7:30-40 0.004436216166
Genome_Size_Range5:0-2 1.803e-621155
Genome_Size_Range5:4-6 0.00005701184
Genome_Size_Range9:1-2 4.659e-821128
Oxygen_Req:Anaerobic 0.003225612102
Oxygen_Req:Facultative 0.00013452201
Oxygen_Req:Microaerophilic 1.781e-91018
Shape:Rod 0.00017239347
Shape:Spiral 1.135e-131634
Temp._range:Hyperthermophilic 0.0051234523



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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
P283-PWY (hydrogen oxidation I (aerobic))78690.6071
PWY-5673 (nitrate reduction III (dissimilatory))106640.4197
PWY-5674 (nitrate reduction IV (dissimilatory))106630.4093



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG11802   EG11801   EG10471   EG10470   EG10469   EG10468   
G75540.9997130.9998490.9996480.9994880.9998030.999824
EG118020.9997720.9998110.9995760.999730.999686
EG118010.9997050.9995580.9999130.999812
EG104710.9996590.9997770.999727
EG104700.9996460.999607
EG104690.999867
EG10468



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PAIRWISE BLAST SCORES:

  G7554   EG11802   EG11801   EG10471   EG10470   EG10469   EG10468   
G75540.0f0-----1.8e-60
EG11802-0.0f0-5.2e-22---
EG11801--0.0f0--2.9e-115-
EG10471-2.0e-20-0.0f0---
EG10470----0.0f0--
EG10469--2.9e-115--0.0f0-
EG104681.7e-64-----0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- FORMHYDROGI-CPLX (hydrogenase 1) (degree of match pw to cand: 1.000, degree of match cand to pw: 0.429, average score: 1.000)
  Genes in pathway or complex:
   *in cand* 0.9996 0.9995 EG10470 (hyaC) HYAC-MONOMER (hydrogenase 1, b-type cytochrome subunit)
   *in cand* 0.9998 0.9996 EG10469 (hyaB) HYAB-MONOMER (hydrogenase 1, large subunit)
   *in cand* 0.9998 0.9996 EG10468 (hyaA) HYAA-MONOMER (hydrogenase 1, small subunit)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9998 0.9996 EG10471 (hyaD) EG10471-MONOMER (protein involved in processing of HyaA and HyaB proteins)
   *in cand* 0.9998 0.9996 EG11801 (hybC) HYBC-MONOMER (hydrogenase 2, large subunit)
   *in cand* 0.9998 0.9996 EG11802 (hybD) EG11802-MONOMER (predicted maturation peptidase for hydrogenase 2)
   *in cand* 0.9998 0.9995 G7554 (hybO) MONOMER0-145 (hydrogenase 2, small subunit)

- FORMHYDROG2-CPLX (hydrogenase 2) (degree of match pw to cand: 0.500, degree of match cand to pw: 0.286, average score: 0.999)
  Genes in pathway or complex:
   *in cand* 0.9998 0.9996 EG11801 (hybC) HYBC-MONOMER (hydrogenase 2, large subunit)
   *in cand* 0.9998 0.9995 G7554 (hybO) MONOMER0-145 (hydrogenase 2, small subunit)
             0.9116 0.3985 EG11800 (hybB) EG11800-MONOMER (predicted hydrogenase 2 cytochrome b type component)
             0.8674 0.0921 EG11799 (hybA) HYBA-MONOMER (hydrogenase 2 4Fe-4S ferredoxin-type component)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9998 0.9996 EG10468 (hyaA) HYAA-MONOMER (hydrogenase 1, small subunit)
   *in cand* 0.9998 0.9996 EG10469 (hyaB) HYAB-MONOMER (hydrogenase 1, large subunit)
   *in cand* 0.9996 0.9995 EG10470 (hyaC) HYAC-MONOMER (hydrogenase 1, b-type cytochrome subunit)
   *in cand* 0.9998 0.9996 EG10471 (hyaD) EG10471-MONOMER (protein involved in processing of HyaA and HyaB proteins)
   *in cand* 0.9998 0.9996 EG11802 (hybD) EG11802-MONOMER (predicted maturation peptidase for hydrogenase 2)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG11801 EG11802 G7554 (centered at EG11801)
EG10468 EG10469 EG10470 EG10471 (centered at EG10470)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7554   EG11802   EG11801   EG10471   EG10470   EG10469   EG10468   
156/623164/623197/623153/623107/623199/623158/623
AAEO224324:0:Tyes2114208422080
ABAC204669:0:Tyes0434-30
ABUT367737:0:Tyes9616082
ACAU438753:0:Tyes0313210
ACEL351607:0:Tyes--0--0-
ACRY349163:8:Tyes3020123
ADEH290397:0:Tyes4010-14
AEHR187272:0:Tyes3020123
AFER243159:0:Tyes2345234723422347023422345
AFUL224325:0:Tyes3020-23
AHYD196024:0:Tyes4010-14
AMAR329726:5:Tyes--0--0-
APLE416269:0:Tyes0434-30
APLE434271:0:Tno0434-30
ASAL382245:5:Tyes0434-30
ASP62928:0:Tyes0616210
AVAR240292:3:Tyes-06480-648649
BAMB398577:1:Tno----0--
BJAP224911:0:Fyes5249524605246524705249
BSP376:0:Tyes0313210
BVIE269482:5:Tyes0313210
BXEN266265:0:Tyes--0--0-
CACE272562:0:Tyes0-1--10
CBEI290402:0:Tyes2-10-12
CBOT36826:1:Tno1-0--01
CBOT441770:0:Tyes1-0--01
CBOT441771:0:Tno1-0--01
CBOT441772:1:Tno1-0--01
CBOT498213:1:Tno1-0--01
CBOT508765:1:Tyes1-0--01
CBOT536232:0:Tno1-0--01
CCHL340177:0:Tyes--0--0-
CCON360104:2:Tyes3020123
CCUR360105:0:Tyes3020123
CDES477974:0:Tyes06191619-10
CDIP257309:0:Tyes0313210
CFET360106:0:Tyes3020123
CHOM360107:1:Tyes0313210
CHYD246194:0:Tyes3020123
CJEJ192222:0:Tyes3020123
CJEJ195099:0:Tno3020123
CJEJ354242:2:Tyes3020123
CJEJ360109:0:Tyes0313210
CJEJ407148:0:Tno3020123
CKOR374847:0:Tyes-10--0-
CMET456442:0:Tyes--1574--0-
CSP501479:7:Fyes4030134
CTEP194439:0:Tyes-30310-
DARO159087:0:Tyes40116171819
DDES207559:0:Tyes0212-10
DETH243164:0:Tyes2010-12
DHAF138119:0:Tyes64906500651650649
DPSY177439:2:Tyes0717210
DSP216389:0:Tyes0212-10
DSP255470:0:Tno2010-12
DVUL882:1:Tyes0212-10
ECAR218491:0:Tyes0434-30
ECOL199310:0:Tno2567256325643210
ECOL316407:0:Tno2030202620273210
ECOL331111:6:Tno2284227922803210
ECOL362663:0:Tno2108210421053210
ECOL364106:1:Tno2375237123723210
ECOL405955:2:Tyes2162215821593210
ECOL409438:6:Tyes2284228022813210
ECOL413997:0:Tno0189718983210
ECOL439855:4:Tno1093108910900123
ECOL469008:0:Tno0431867186818691870
ECOL481805:0:Tno0431926192731929
ECOL585034:0:Tno2095209120923210
ECOL585035:0:Tno2289228522863210
ECOL585055:0:Tno2297229322943210
ECOL585056:2:Tno2311230723083210
ECOL585057:0:Tno1335133113320123
ECOL585397:0:Tno2504250025013210
ECOL83334:0:Tno2814281028113210
ECOLI:0:Tno2082207820793210
ECOO157:0:Tno2733272927303210
EFER585054:1:Tyes1823181918203210
ESP42895:1:Tyes-----0-
FALN326424:0:Tyes55201551-12
FJOH376686:0:Tyes0313210
FPHI484022:1:Tyes--0--0-
FSP106370:0:Tyes870342210-12
FSP1855:0:Tyes0313210
GMET269799:1:Tyes3020123
GSUL243231:0:Tyes65706600123
GURA351605:0:Tyes139301396013253
HACI382638:1:Tyes0313210
HBUT415426:0:Tyes340--03
HCHE349521:0:Tyes--0--0-
HHEP235279:0:Tyes0313210
HMOD498761:0:Tyes289418940892891
HPY:0:Tno0313210
HPYL357544:1:Tyes0313210
HPYL85963:0:Tno0313210
IHOS453591:0:Tyes8830884--884883
KPNE272620:2:Tyes-----0-
LCHO395495:0:Tyes1-0-220701
LINT363253:3:Tyes0313210
LPNE272624:0:Tno-01--1-
LPNE297245:1:Fno--0--0-
LPNE297246:1:Fyes--0--0-
LPNE400673:0:Tno--0--0-
MACE188937:0:Tyes1541571600-155154
MAEO419665:0:Tyes-6710671-0-
MAER449447:0:Tyes--0--0-
MAVI243243:0:Tyes0616-10
MBAR269797:1:Tyes1382137913750-13811382
MCAP243233:0:Tyes4030134
MHUN323259:0:Tyes-010-1-
MJAN243232:2:Tyes-2310231-0-
MKAN190192:0:Tyes--01365-0-
MLAB410358:0:Tyes--10-1-
MMAG342108:0:Tyes4010-14
MMAR267377:0:Tyes-5200520-0-
MMAR368407:0:Tyes-707-0-
MMAR402880:1:Tyes-0392388-392-
MMAR426368:0:Tyes-0440-44-
MMAR444158:0:Tyes-3670367-322-
MMAZ192952:0:Tyes037885-10
MPET420662:1:Tyes5040245
MSED399549:0:Tyes807--78
MSME246196:0:Tyes455165101-0455
MSP164756:1:Tno112840--01
MSP164757:0:Tno605--56
MSP189918:2:Tyes112990--01
MSTA339860:0:Tyes-2100--0-
MSUC221988:0:Tyes5010-15
MTHE187420:0:Tyes-05630-563-
MTHE264732:0:Tyes-04--4-
MVAN350058:0:Tyes50441--10
NMUL323848:3:Tyes--0--0-
NSP103690:6:Tyes074079740-790
NSP387092:0:Tyes0313210
PABY272844:0:Tyes-1400--234-
PARS340102:0:Tyes4010-14
PDIS435591:0:Tyes0313210
PFUR186497:0:Tyes--0--0-
PHOR70601:0:Tyes-0642--642-
PING357804:0:Tyes--0--0-
PISL384616:0:Tyes4010-14
PLUT319225:0:Tyes0313210
PNAP365044:8:Tyes4030134
PPRO298386:1:Tyes----0--
PSP296591:2:Tyes----0--
PTHE370438:0:Tyes1020-21
RCAS383372:0:Tyes3020123
REUT381666:0:Tyes0414210
RFER338969:1:Tyes3586359035893590035893586
RMET266264:2:Tyes5040245
RPAL258594:0:Tyes0313210
RPAL316055:0:Tyes0313210
RPAL316056:0:Tyes3020123
RPAL316057:0:Tyes0313210
RRUB269796:1:Tyes0313210
RSP101510:3:Fyes4552045534558-45534552
RSP357808:0:Tyes0313210
RSPH272943:4:Tyes0414310
RSPH349101:2:Tno0414310
RSPH349102:4:Tyes4030134
SACI56780:0:Tyes--0--0-
SALA317655:0:Fyes--14-10
SALA317655:1:Tyes----0--
SAVE227882:1:Fyes0616-10
SBAL399599:3:Tyes3020123
SBAL402882:1:Tno3020123
SBOY300268:1:Tyes5805845830123
SDYS300267:1:Tyes2003200720063210
SELO269084:0:Tyes--0--0-
SENT209261:0:Tno189218881889012351
SENT220341:0:Tno1635163116323563553540
SENT295319:0:Tno18561852185301218217
SENT321314:2:Tno1333132913302113300
SENT454169:2:Tno1357135313543210
SERY405948:0:Tyes2030-32
SFLE198214:0:Tyes1969196519663210
SFLE373384:0:Tno1960195619573210
SFUM335543:0:Tyes2010-12
SHAL458817:0:Tyes0313210
SHIGELLA:0:Tno1893188918903210
SLOI323850:0:Tyes3020123
SMAR399550:0:Tyes--0--0-
SONE211586:1:Tyes3020123
SPEA398579:0:Tno3020123
SPRO399741:1:Tyes--0--0-
SSED425104:0:Tyes3020123
SSON300269:1:Tyes2056205220532-10
SSP1148:0:Tyes--0--0-
SSP387093:0:Tyes210200192021
SSP94122:1:Tyes3020123
STYP99287:1:Tyes1358135413553210
TCRU317025:0:Tyes2010-12
TDEN292415:0:Tyes3505-03
TDEN326298:0:Tyes3020123
TERY203124:0:Tyes2010-12
TKOD69014:0:Tyes-03--3-
TPEN368408:1:Tyes203--32
TROS309801:1:Tyes5040-45
TTEN273068:0:Tyes--1496--0-
UMET351160:0:Tyes120644012050-12051206
VEIS391735:1:Tyes----0--
WSUC273121:0:Tyes3020123
XAUT78245:1:Tyes0313210
YENT393305:1:Tyes4010-14



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