CANDIDATE ID: 117

CANDIDATE ID: 117

NUMBER OF GENES: 7
AVERAGE SCORE:    9.9962790e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:   2.4345143e-49

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G6780 (ddpB) (b1486)
   Products of gene:
     - YDDR-MONOMER (YddR)
     - ABC-59-CPLX (YddO/YddP/YddQ/YddR/YddS ABC transporter)

- G6431 (gsiC) (b0831)
   Products of gene:
     - YLIC-MONOMER (GsiC)
     - ABC-49-CPLX (gsiABCD glutathione ABC transporter)
       Reactions:
        glutathione[periplasmic space] + ATP + H2O  ->  glutathione[cytosol] + ADP + phosphate

- G6430 (gsiB) (b0830)
   Products of gene:
     - YLIB-MONOMER (GsiB)
     - ABC-49-CPLX (gsiABCD glutathione ABC transporter)
       Reactions:
        glutathione[periplasmic space] + ATP + H2O  ->  glutathione[cytosol] + ADP + phosphate

- G2002 (sapA) (b1294)
   Products of gene:
     - SAPA-MONOMER (SapA)
     - ABC-29-CPLX (peptide uptake ABC transporter)
       Reactions:
        ATP + a peptide[periplasmic space] + H2O  ->  ADP + phosphate + a peptide[cytosol]

- G2001 (sapB) (b1293)
   Products of gene:
     - SAPB-MONOMER (SapB)
     - ABC-29-CPLX (peptide uptake ABC transporter)
       Reactions:
        ATP + a peptide[periplasmic space] + H2O  ->  ADP + phosphate + a peptide[cytosol]

- EG12625 (dppB) (b3543)
   Products of gene:
     - DPPB-MONOMER (DppB)
     - ABC-8-CPLX (dipeptide ABC transporter)
       Reactions:
        ATP + a dipeptide[periplasmic space] + H2O  ->  ADP + phosphate + a dipeptide[cytosol]

- EG10248 (dppA) (b3544)
   Products of gene:
     - DPPA-MONOMER (DppA)
     - ABC-8-CPLX (dipeptide ABC transporter)
       Reactions:
        ATP + a dipeptide[periplasmic space] + H2O  ->  ADP + phosphate + a dipeptide[cytosol]



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ORGANISMS CONTAINING AT LEAST 6 GENES FROM THE GROUP:

Total number of orgs: 157
Effective number of orgs (counting one per cluster within 468 clusters): 107

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317586
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329536
YPES386656 ncbi Yersinia pestis Pestoides F6
YPES377628 ncbi Yersinia pestis Nepal5166
YPES360102 ncbi Yersinia pestis Antiqua6
YPES214092 ncbi Yersinia pestis CO926
YPES187410 ncbi Yersinia pestis KIM 106
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80816
VEIS391735 ncbi Verminephrobacter eiseniae EF01-27
TTHE300852 ncbi Thermus thermophilus HB86
TTHE262724 ncbi Thermus thermophilus HB277
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB46
TSP28240 Thermotoga sp.7
TROS309801 ncbi Thermomicrobium roseum DSM 51597
TPET390874 ncbi Thermotoga petrophila RKU-16
TMAR243274 ncbi Thermotoga maritima MSB87
TLET416591 ncbi Thermotoga lettingae TMO7
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT27
STRO369723 ncbi Salinispora tropica CNB-4406
STHE292459 ncbi Symbiobacterium thermophilum IAM 148637
SSP644076 Silicibacter sp. TrichCH4B7
SSP292414 ncbi Ruegeria sp. TM10407
SSON300269 ncbi Shigella sonnei Ss0467
SPRO399741 ncbi Serratia proteamaculans 5687
SMEL266834 ncbi Sinorhizobium meliloti 10217
SMED366394 ncbi Sinorhizobium medicae WSM4197
SLAC55218 Ruegeria lacuscaerulensis7
SHIGELLA ncbi Shigella flexneri 2a str. 2457T7
SGLO343509 ncbi Sodalis glossinidius morsitans7
SFLE373384 ncbi Shigella flexneri 5 str. 84017
SFLE198214 ncbi Shigella flexneri 2a str. 3017
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23386
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4767
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B677
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91507
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT187
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty27
SDYS300267 ncbi Shigella dysenteriae Sd1977
SBOY300268 ncbi Shigella boydii Sb2277
SARE391037 ncbi Salinispora arenicola CNS-2056
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99417
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170257
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170297
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.17
RSOL267608 ncbi Ralstonia solanacearum GMI10007
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111707
RPOM246200 ncbi Ruegeria pomeroyi DSS-37
RMET266264 ncbi Ralstonia metallidurans CH347
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38417
RFER338969 ncbi Rhodoferax ferrireducens T1187
REUT381666 ncbi Ralstonia eutropha H167
RETL347834 ncbi Rhizobium etli CFN 427
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30007
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a7
PSP56811 Psychrobacter sp.6
PSP296591 ncbi Polaromonas sp. JS6667
PPUT76869 ncbi Pseudomonas putida GB-17
PPUT351746 ncbi Pseudomonas putida F17
PPUT160488 ncbi Pseudomonas putida KT24407
PMUL272843 ncbi Pasteurella multocida multocida Pm707
PMEN399739 ncbi Pseudomonas mendocina ymp7
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO16
PFLU220664 ncbi Pseudomonas fluorescens Pf-57
PFLU216595 ncbi Pseudomonas fluorescens SBW257
PFLU205922 ncbi Pseudomonas fluorescens Pf0-17
PENT384676 ncbi Pseudomonas entomophila L487
PAER208964 ncbi Pseudomonas aeruginosa PAO17
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA146
OIHE221109 ncbi Oceanobacillus iheyensis HTE8317
OANT439375 ncbi Ochrobactrum anthropi ATCC 491887
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E7
MSP409 Methylobacterium sp.7
MSP400668 ncbi Marinomonas sp. MWYL17
MSP266779 ncbi Chelativorans sp. BNC17
MLOT266835 ncbi Mesorhizobium loti MAFF3030997
MACE188937 ncbi Methanosarcina acetivorans C2A7
LSPH444177 ncbi Lysinibacillus sphaericus C3-417
KRAD266940 ncbi Kineococcus radiotolerans SRS302167
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785787
HPYL85963 ncbi Helicobacter pylori J997
HPYL357544 ncbi Helicobacter pylori HPAG16
HPY ncbi Helicobacter pylori 266957
HINF71421 ncbi Haemophilus influenzae Rd KW207
HINF281310 ncbi Haemophilus influenzae 86-028NP7
HDUC233412 ncbi Haemophilus ducreyi 35000HP7
HCHE349521 ncbi Hahella chejuensis KCTC 23966
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237796
HACI382638 ncbi Helicobacter acinonychis Sheeba7
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-27
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255866
ESP42895 Enterobacter sp.7
EFER585054 ncbi Escherichia fergusonii ATCC 354697
ECOO157 ncbi Escherichia coli O157:H7 EDL9337
ECOL83334 Escherichia coli O157:H77
ECOL585397 ncbi Escherichia coli ED1a7
ECOL585057 ncbi Escherichia coli IAI397
ECOL585056 ncbi Escherichia coli UMN0267
ECOL585055 ncbi Escherichia coli 559897
ECOL585035 ncbi Escherichia coli S887
ECOL585034 ncbi Escherichia coli IAI17
ECOL481805 ncbi Escherichia coli ATCC 87397
ECOL469008 ncbi Escherichia coli BL21(DE3)7
ECOL439855 ncbi Escherichia coli SMS-3-57
ECOL413997 ncbi Escherichia coli B str. REL6067
ECOL409438 ncbi Escherichia coli SE117
ECOL405955 ncbi Escherichia coli APEC O17
ECOL364106 ncbi Escherichia coli UTI897
ECOL362663 ncbi Escherichia coli 5367
ECOL331111 ncbi Escherichia coli E24377A7
ECOL316407 ncbi Escherichia coli K-12 substr. W31107
ECOL199310 ncbi Escherichia coli CFT0737
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10437
DRED349161 ncbi Desulfotomaculum reducens MI-17
DRAD243230 ncbi Deinococcus radiodurans R17
DHAF138119 ncbi Desulfitobacterium hafniense Y517
DGEO319795 ncbi Deinococcus geothermalis DSM 113007
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G206
CVIO243365 ncbi Chromobacterium violaceum ATCC 124727
CSP501479 Citreicella sp. SE457
CPSY167879 ncbi Colwellia psychrerythraea 34H6
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF86
CKLU431943 ncbi Clostridium kluyveri DSM 5557
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29016
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C7
BVIE269482 ncbi Burkholderia vietnamiensis G47
BTHA271848 ncbi Burkholderia thailandensis E2647
BSP376 Bradyrhizobium sp.7
BSP36773 Burkholderia sp.7
BPUM315750 ncbi Bacillus pumilus SAFR-0327
BPSE320373 ncbi Burkholderia pseudomallei 6687
BPSE320372 ncbi Burkholderia pseudomallei 1710b7
BPSE272560 ncbi Burkholderia pseudomallei K962437
BPET94624 Bordetella petrii7
BPER257313 ncbi Bordetella pertussis Tohama I7
BPAR257311 ncbi Bordetella parapertussis 128227
BMEL359391 ncbi Brucella melitensis biovar Abortus 23086
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M7
BMAL320389 ncbi Burkholderia mallei NCTC 102477
BMAL320388 ncbi Burkholderia mallei SAVP17
BMAL243160 ncbi Burkholderia mallei ATCC 233447
BLIC279010 ncbi Bacillus licheniformis ATCC 145807
BHAL272558 ncbi Bacillus halodurans C-1257
BCLA66692 ncbi Bacillus clausii KSM-K167
BCEN331272 ncbi Burkholderia cenocepacia HI24247
BCEN331271 ncbi Burkholderia cenocepacia AU 10547
BBRO257310 ncbi Bordetella bronchiseptica RB507
BANT592021 ncbi Bacillus anthracis A02486
BANT261594 ncbi Bacillus anthracis Ames Ancestor6
BAMB398577 ncbi Burkholderia ambifaria MC40-67
BAMB339670 ncbi Burkholderia ambifaria AMMD7
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL037
APLE416269 ncbi Actinobacillus pleuropneumoniae L207
APER272557 ncbi Aeropyrum pernix K16
AORE350688 ncbi Alkaliphilus oremlandii OhILAs6
AMET293826 ncbi Alkaliphilus metalliredigens QYMF7
ABAU360910 ncbi Bordetella avium 197N7
AAVE397945 ncbi Acidovorax citrulli AAC00-17


Names of the homologs of the genes in the group in each of these orgs
  G6780   G6431   G6430   G2002   G2001   EG12625   EG10248   
YPSE349747 YPSIP31758_4074YPSIP31758_4075YPSIP31758_1784YPSIP31758_1783YPSIP31758_4074YPSIP31758_4075
YPSE273123 YPTB3841YPTB3842YPTB2272YPTB2273YPTB3841YPTB3842
YPES386656 YPDSF_3368YPDSF_3369YPDSF_0788YPDSF_0787YPDSF_3368YPDSF_3369
YPES377628 YPN_3651YPN_3652YPN_1815YPN_1816YPN_3651YPN_3652
YPES360102 YPA_2952YPA_3830YPA_1704YPA_1705YPA_3829YPA_3830
YPES214092 YPO3450YPO4003YPO2355YPO2356YPO4002YPO4003
YPES187410 Y0737Y3825Y1977Y1976Y3826Y3825
YENT393305 YE0490YE4083YE2125YE2126YE4082YE4083
VEIS391735 VEIS_4120VEIS_4592VEIS_4591VEIS_4121VEIS_4120VEIS_4120VEIS_4591
TTHE300852 TTHA1337TTHA1337TTHA1336TTHA1336TTHA1337TTHA1336
TTHE262724 TT_C0972TT_C0972TT_C0971TT_C0971TT_C0972TT_C0972TT_C0971
TTEN273068 TTE1914TTE1915TTE1915TTE1914TTE1914TTE1915
TSP28240 TRQ2_1667TRQ2_1667TRQ2_1666TRQ2_1666TRQ2_1667TRQ2_1667TRQ2_1666
TROS309801 TRD_1861TRD_1524TRD_A0699TRD_A0699TRD_1279TRD_1861TRD_A0699
TPET390874 TPET_1601TPET_1601TPET_1600TPET_1601TPET_1601TPET_1600
TMAR243274 TM_1149TM_1149TM_1150TM_1150TM_1149TM_1149TM_1150
TLET416591 TLET_0854TLET_0201TLET_0202TLET_0202TLET_0854TLET_0854TLET_0071
STYP99287 STM3629STM0850STM0849STM1692STM1693STM3629STM3630
STRO369723 STROP_0217STROP_1670STROP_1669STROP_0217STROP_0217STROP_0216
STHE292459 STH2314STH2653STH2315STH2315STH1108STH2314STH2315
SSP644076 SCH4B_2930SCH4B_3732SCH4B_2895SCH4B_2895SCH4B_3822SCH4B_3406SCH4B_2895
SSP292414 TM1040_2715TM1040_2685TM1040_2686TM1040_2686TM1040_0037TM1040_0037TM1040_2686
SSON300269 SSO_1638SSO_0813SSO_0812SSO_1846SSO_1847SSO_3847SSO_3846
SPRO399741 SPRO_2348SPRO_1552SPRO_1551SPRO_2629SPRO_2630SPRO_0139SPRO_3431
SMEL266834 SMC01526SMC03127SMB20476SMC00786SMC00787SMC00787SMC00786
SMED366394 SMED_0330SMED_2854SMED_3647SMED_0329SMED_0330SMED_0330SMED_0329
SLAC55218 SL1157_0096SL1157_3372SL1157_1240SL1157_0098SL1157_0096SL1157_0096SL1157_0098
SHIGELLA DPPBS0824S0823SAPASAPBDPPBDPPA
SGLO343509 SG0061SG0061SG0060SG1506SG1507SG0061SG0060
SFLE373384 SFV_3544SFV_0814SFV_0813SFV_1308SFV_1307SFV_3544SFV_3543
SFLE198214 AAN45029.1AAN42415.1AAN42414.1AAN42910.1AAN42909.1AAN45029.1AAN45030.1
SERY405948 SACE_0258SACE_1275SACE_1274SACE_0258SACE_0258SACE_0257
SENT454169 SEHA_C3949SEHA_C0980SEHA_C0979SEHA_C1878SEHA_C1879SEHA_C3949SEHA_C3950
SENT321314 SCH_3560SCH_0845SCH_0844SCH_1685SCH_1686SCH_3560SCH_3561
SENT295319 SPA3486SPA1905SPA1906SPA1192SPA1191SPA3486SPA3487
SENT220341 STY4169STY0889STY0888STY1369STY1368STY4169STY4168
SENT209261 T3886T2039T2040T1597T1598T3886T3885
SDYS300267 SDY_4566SDY_0756SDY_0757SDY_1638SDY_1639SDY_4566SDY_4567
SBOY300268 SBO_1571SBO_0721SBO_0720SBO_1768SBO_1769SBO_3542SBO_1768
SARE391037 SARE_1662SARE_1662SARE_1661SARE_0256SARE_0256SARE_0255
RXYL266117 RXYL_2423RXYL_2423RXYL_2424RXYL_2424RXYL_3026RXYL_2423RXYL_2424
RSPH349102 RSPH17025_3964RSPH17025_3964RSPH17025_3963RSPH17025_3963RSPH17025_3964RSPH17025_3964RSPH17025_3963
RSPH349101 RSPH17029_3970RSPH17029_3970RSPH17029_3969RSPH17029_3969RSPH17029_3970RSPH17029_3970RSPH17029_3969
RSPH272943 RSP_3232RSP_3232RSP_3231RSP_3231RSP_3232RSP_3232RSP_3231
RSOL267608 RSC1381RSC1381RSC1380RSC1380RSC1381RSC1381RSC1380
RRUB269796 RRU_A2357RRU_A2357RRU_A2356RRU_A2356RRU_A2357RRU_A2357RRU_A2356
RPOM246200 SPO_1544SPO_1211SPO_2554SPO_2554SPO_1544SPO_1544SPO_2554
RMET266264 RMET_1409RMET_1409RMET_1408RMET_1408RMET_3157RMET_4576RMET_1408
RLEG216596 RL0779RL0779PRL90185RL0778RL0779RL0779RL0778
RFER338969 RFER_1953RFER_3104RFER_3103RFER_1949RFER_1953RFER_1953RFER_1949
REUT381666 H16_A2099H16_A2099H16_A2100H16_A3298H16_A3297H16_B0720H16_A2100
RETL347834 RHE_CH03993RHE_PE00341RHE_PB00094RHE_CH00736RHE_CH00737RHE_CH00737RHE_CH00736
PSYR223283 PSPTO_4562PSPTO_2575PSPTO_4561PSPTO_4557PSPTO_4562PSPTO_4562PSPTO_4559
PSYR205918 PSYR_4239PSYR_2679PSYR_4238PSYR_4235PSYR_4239PSYR_4239PSYR_4236
PSP56811 PSYCPRWF_1527PSYCPRWF_1526PSYCPRWF_1526PSYCPRWF_1527PSYCPRWF_1527PSYCPRWF_1526
PSP296591 BPRO_2812BPRO_0138BPRO_0139BPRO_2816BPRO_2812BPRO_2812BPRO_2816
PPUT76869 PPUTGB1_0924PPUTGB1_0924PPUTGB1_0925PPUTGB1_0928PPUTGB1_0924PPUTGB1_0924PPUTGB1_0928
PPUT351746 PPUT_0920PPUT_0920PPUT_0924PPUT_0924PPUT_0920PPUT_0920PPUT_0924
PPUT160488 PP_0881PP_4455PP_0885PP_0885PP_0881PP_0881PP_0885
PMUL272843 PM0237PM0237PM0236PM0911PM0912PM0237PM0236
PMEN399739 PMEN_0840PMEN_0840PMEN_0841PMEN_0841PMEN_0840PMEN_0840PMEN_0845
PLUM243265 PLU0301PLU0300PLU2587PLU2588PLU0301PLU0300
PFLU220664 PFL_4025PFL_4025PFL_6050PFL_0881PFL_0877PFL_0877PFL_0881
PFLU216595 PFLU0822PFLU0822PFLU1636PFLU0827PFLU0822PFLU0822PFLU0827
PFLU205922 PFL_0812PFL_0812PFL_0815PFL_0816PFL_0812PFL_0812PFL_0816
PENT384676 PSEEN1056PSEEN1056PSEEN1060PSEEN1060PSEEN1056PSEEN1056PSEEN1060
PAER208964 PA4503PA4503PA4496PA4500PA4503PA4503PA4502
PAER208963 PA14_58440PA14_58350PA14_58390PA14_58440PA14_58440PA14_58420
OIHE221109 OB2450OB3068OB2451OB2451OB2450OB2450OB2451
OANT439375 OANT_1583OANT_0627OANT_0626OANT_1582OANT_1583OANT_1583OANT_4405
MSUC221988 MS1367MS1367MS2053MS0856MS0855MS1367MS2053
MSP409 M446_1691M446_2209M446_1690M446_1690M446_1691M446_1691M446_1690
MSP400668 MMWYL1_0113MMWYL1_0113MMWYL1_0114MMWYL1_0114MMWYL1_0113MMWYL1_0113MMWYL1_0114
MSP266779 MESO_0066MESO_1505MESO_2408MESO_0067MESO_0066MESO_0066MESO_0067
MLOT266835 MLR6671MLR5417MLR1186MLR5416MLR5417MLR5417MLR5416
MACE188937 MA4250MA4250MA4247MA4247MA4250MA4250MA3461
LSPH444177 BSPH_0319BSPH_0319BSPH_4232BSPH_0318BSPH_0319BSPH_0319BSPH_0318
KRAD266940 KRAD_2997KRAD_0146KRAD_0145KRAD_2998KRAD_2997KRAD_2997KRAD_2998
KPNE272620 GKPORF_B3251GKPORF_B5299GKPORF_B5298GKPORF_B0330GKPORF_B0329GKPORF_B3251GKPORF_B3252
HPYL85963 JHP0284JHP0284JHP0283JHP0283JHP0284JHP0284JHP0283
HPYL357544 HPAG1_0301HPAG1_0300HPAG1_0300HPAG1_0301HPAG1_0301HPAG1_0300
HPY HP0299HP0299HP0298HP0298HP0299HP0299HP0298
HINF71421 HI_1187HI_1187HI_0853HI_1638HI_1639HI_1187HI_0853
HINF281310 NTHI1357NTHI1357NTHI1021NTHI1401NTHI1400NTHI1357NTHI1021
HDUC233412 HD_0312HD_0312HD_0215HD_1230HD_1231HD_0312HD_0215
HCHE349521 HCH_00012HCH_00012HCH_00013HCH_00013HCH_00012HCH_00013
HAUR316274 HAUR_1606HAUR_1605HAUR_1605HAUR_1606HAUR_1606HAUR_1605
HACI382638 HAC_0560HAC_0560HAC_0559HAC_0559HAC_0560HAC_0560HAC_0559
GTHE420246 GTNG_0479GTNG_0479GTNG_0478GTNG_0478GTNG_0479GTNG_0479GTNG_0478
FNUC190304 FN0397FN0397FN0396FN0396FN0397FN0396
ESP42895 ENT638_1104ENT638_1325ENT638_1324ENT638_2171ENT638_2172ENT638_0185ENT638_2107
EFER585054 EFER_3540EFER_0972EFER_0971EFER_1660EFER_1661EFER_3540EFER_3541
ECOO157 Z2224Z1055Z1054SAPASAPBDPPBDPPA
ECOL83334 ECS2090ECS0910ECS0909ECS1871ECS1870ECS4423ECS4424
ECOL585397 ECED1_4222ECED1_0795ECED1_0794ECED1_1509ECED1_1508ECED1_4222ECED1_4223
ECOL585057 ECIAI39_1750ECIAI39_0808ECIAI39_0807ECIAI39_1645ECIAI39_1644ECIAI39_4052ECIAI39_4053
ECOL585056 ECUMN_1740ECUMN_1019ECUMN_1018ECUMN_1599ECUMN_1598ECUMN_4053ECUMN_4055
ECOL585055 EC55989_1618EC55989_0876EC55989_0875EC55989_1456EC55989_1455EC55989_3994EC55989_3996
ECOL585035 ECS88_3963ECS88_0848ECS88_0847ECS88_1440ECS88_1439ECS88_3963ECS88_3964
ECOL585034 ECIAI1_1496ECIAI1_0870ECIAI1_0869ECIAI1_1319ECIAI1_1318ECIAI1_3701ECIAI1_3703
ECOL481805 ECOLC_2171ECOLC_2813ECOLC_2814ECOLC_2331ECOLC_2332ECOLC_0172ECOLC_0171
ECOL469008 ECBD_2153ECBD_2792ECBD_2793ECBD_2323ECBD_2324ECBD_0193ECBD_0192
ECOL439855 ECSMS35_1687ECSMS35_0856ECSMS35_0855ECSMS35_1828ECSMS35_1829ECSMS35_3862ECSMS35_3863
ECOL413997 ECB_01444ECB_00798ECB_00797ECB_01271ECB_01270ECB_03394ECB_03395
ECOL409438 ECSE_1576ECSE_0889ECSE_0888ECSE_1346ECSE_1345ECSE_3816ECSE_3817
ECOL405955 APECO1_2905APECO1_1262APECO1_1263APECO1_457APECO1_456APECO1_2905APECO1_2904
ECOL364106 UTI89_C4081UTI89_C0834UTI89_C0833UTI89_C1571UTI89_C1570UTI89_C4081UTI89_C4082
ECOL362663 ECP_3644ECP_0845ECP_0844ECP_1352ECP_1351ECP_3644ECP_3646
ECOL331111 ECE24377A_1675ECE24377A_0902ECE24377A_0901ECE24377A_1501ECE24377A_1500ECE24377A_4035ECE24377A_4037
ECOL316407 ECK1480:JW1481:B1486ECK0821:JW0815:B0831ECK0820:JW5111:B0830ECK1289:JW1287:B1294ECK1288:JW1286:B1293ECK3530:JW3512:B3543ECK3531:JW3513:B3544
ECOL199310 C4358C0916C0915C1771C1770C4358C4361
ECAR218491 ECA4075ECA2833ECA2834ECA1977ECA1976ECA4393ECA4394
DRED349161 DRED_0390DRED_2453DRED_2454DRED_2454DRED_2453DRED_2453DRED_2454
DRAD243230 DR_0959DR_0959DR_1290DR_1290DR_0959DR_0959DR_1290
DHAF138119 DSY0503DSY0503DSY0502DSY0502DSY0503DSY0503DSY0502
DGEO319795 DGEO_1190DGEO_1190DGEO_1189DGEO_1189DGEO_1190DGEO_1190DGEO_1189
DDES207559 DDE_1184DDE_3174DDE_1185DDE_1184DDE_1184DDE_1185
CVIO243365 CV_1098CV_1098CV_3426CV_1097CV_1098CV_1098CV_1097
CSP501479 CSE45_2493CSE45_4965CSE45_3619CSE45_3619CSE45_2493CSE45_4965CSE45_3619
CPSY167879 CPS_3776CPS_3775CPS_3775CPS_3776CPS_3776CPS_3775
CKOR374847 KCR_0930KCR_0930KCR_0510KCR_0930KCR_0930KCR_0929
CKLU431943 CKL_1312CKL_1312CKL_1311CKL_1311CKL_1312CKL_1312CKL_1311
CHYD246194 CHY_1129CHY_1128CHY_1128CHY_1129CHY_1129CHY_1128
CDES477974 DAUD_0386DAUD_0386DAUD_1982DAUD_1982DAUD_0386DAUD_0386DAUD_1982
BVIE269482 BCEP1808_3129BCEP1808_4721BCEP1808_4720BCEP1808_3130BCEP1808_3129BCEP1808_3129BCEP1808_3130
BTHA271848 BTH_I0221BTH_II1114BTH_II1113BTH_I0220BTH_I0221BTH_I0221BTH_I0220
BSP376 BRADO6822BRADO2921BRADO1743BRADO1743BRADO1742BRADO1742BRADO1743
BSP36773 BCEP18194_A6391BCEP18194_B1866BCEP18194_B1867BCEP18194_B2067BCEP18194_A6391BCEP18194_A6391BCEP18194_B2067
BPUM315750 BPUM_0822BPUM_0822BPUM_0821BPUM_0821BPUM_0822BPUM_0822BPUM_0821
BPSE320373 BURPS668_0244BURPS668_A1851BURPS668_A1853BURPS668_0243BURPS668_0244BURPS668_0244BURPS668_0243
BPSE320372 BURPS1710B_A0462BURPS1710B_B0388BURPS1710B_B0390BURPS1710B_A0461BURPS1710B_A0462BURPS1710B_A0462BURPS1710B_A0461
BPSE272560 BPSL0250BPSS1305BPSS1306BPSL0249BPSL0250BPSL0250BPSL0249
BPET94624 BPET1795BPET1795BPET1794BPET3079BPET1795BPET2851BPET1794
BPER257313 BP2395BP2395BP2396BP2396BP2395BP2395BP2396
BPAR257311 BPP3260BPP3260BPP3261BPP3261BPP3260BPP3260BPP3261
BMEL359391 BAB1_1599BAB1_1599BAB2_0974BAB1_1599BAB1_1599BAB1_1600
BMEL224914 BMEI0435BMEI0435BMEII0284BMEI0433BMEI0435BMEI0435BMEI0433
BMAL320389 BMA10247_3377BMA10247_A1357BMA10247_A1359BMA10247_3378BMA10247_3377BMA10247_3377BMA10247_3378
BMAL320388 BMASAVP1_A2970BMASAVP1_0400BMASAVP1_0402BMASAVP1_A2969BMASAVP1_A2970BMASAVP1_A2970BMASAVP1_A2969
BMAL243160 BMA_3302BMA_A0976BMA_A0975BMA_3301BMA_3302BMA_3302BMA_3301
BLIC279010 BL03047BL03047BL03046BL03046BL03047BL03047BL03046
BHAL272558 BH3643BH0029BH3026BH3644BH3643BH3643BH3644
BCLA66692 ABC1241ABC0565ABC0033ABC1240ABC0565ABC1241ABC1240
BCEN331272 BCEN2424_3044BCEN2424_4164BCEN2424_4163BCEN2424_4016BCEN2424_3044BCEN2424_3044BCEN2424_3045
BCEN331271 BCEN_2430BCEN_4202BCEN_4203BCEN_4350BCEN_2430BCEN_2430BCEN_2431
BBRO257310 BB3711BB3711BB3712BB3712BB3711BB3711BB3712
BANT592021 BAA_4748BAA_4748BAA_4746BAA_4746BAA_4748BAA_4746
BANT261594 GBAA4732GBAA4732GBAA4729GBAA4729GBAA4732GBAA4729
BAMB398577 BAMMC406_2955BAMMC406_4053BAMMC406_4052BAMMC406_3923BAMMC406_2955BAMMC406_2955BAMMC406_3923
BAMB339670 BAMB_3089BAMB_3572BAMB_3571BAMB_3416BAMB_3089BAMB_3089BAMB_3416
APLE434271 APJL_0065APJL_0065APJL_0063APJL_0064APJL_0801APJL_0065APJL_0866
APLE416269 APL_0065APL_0065APL_0063APL_0064APL_0795APL_0065APL_2010
APER272557 APE0303APE2258APE2257APE0303APE2258APE2257
AORE350688 CLOS_1348CLOS_1348CLOS_1347CLOS_1347CLOS_1348CLOS_1347
AMET293826 AMET_2908AMET_2908AMET_2909AMET_2909AMET_2908AMET_2908AMET_2909
ABAU360910 BAV1160BAV1160BAV1159BAV1159BAV1160BAV1645BAV1159
AAVE397945 AAVE_1659AAVE_1659AAVE_1658AAVE_1658AAVE_1659AAVE_1659AAVE_1658


Organism features enriched in list (features available for 146 out of the 157 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Pairs 0.005686538112
Disease:Bubonic_plague 0.004241756
Disease:Dysentery 0.000228166
Endospores:No 1.911e-728211
GC_Content_Range4:0-40 9.361e-1418213
GC_Content_Range4:40-60 0.001139371224
GC_Content_Range4:60-100 4.454e-657145
GC_Content_Range7:0-30 0.0000118147
GC_Content_Range7:30-40 2.477e-817166
GC_Content_Range7:50-60 0.000022144107
GC_Content_Range7:60-70 3.610e-654134
Genome_Size_Range5:0-2 5.537e-1111155
Genome_Size_Range5:2-4 1.936e-725197
Genome_Size_Range5:4-6 4.426e-1382184
Genome_Size_Range5:6-10 1.204e-72847
Genome_Size_Range9:1-2 1.176e-711128
Genome_Size_Range9:2-3 3.379e-612120
Genome_Size_Range9:4-5 6.018e-74496
Genome_Size_Range9:5-6 0.00002513888
Genome_Size_Range9:6-8 5.454e-92638
Gram_Stain:Gram_Neg 9.427e-9112333
Gram_Stain:Gram_Pos 0.000192722150
Habitat:Aquatic 0.00141201291
Habitat:Multiple 0.005201056178
Motility:No 8.212e-815151
Motility:Yes 9.941e-894267
Oxygen_Req:Anaerobic 0.002506815102
Oxygen_Req:Facultative 0.000621366201
Shape:Coccus 1.835e-6582
Shape:Rod 2.618e-10118347



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 370
Effective number of orgs (counting one per cluster within 468 clusters): 291

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM40
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A0
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110180
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103310
XFAS405440 ncbi Xylella fastidiosa M120
XFAS183190 ncbi Xylella fastidiosa Temecula10
XFAS160492 ncbi Xylella fastidiosa 9a5c0
XCAM487884 Xanthomonas campestris pv. paulliniae0
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-100
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80040
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339130
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3060
WSUC273121 ncbi Wolinella succinogenes DSM 17400
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTUR377629 ncbi Teredinibacter turnerae T79011
TSP1755 Thermoanaerobacter sp.0
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332231
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TFUS269800 ncbi Thermobifida fusca YX0
TELO197221 ncbi Thermosynechococcus elongatus BP-11
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12510
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252590
TDEN243275 ncbi Treponema denticola ATCC 354050
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen0
STOK273063 ncbi Sulfolobus tokodaii 70
STHE322159 ncbi Streptococcus thermophilus LMD-90
STHE299768 ncbi Streptococcus thermophilus CNRZ10660
STHE264199 ncbi Streptococcus thermophilus LMG 183110
SSUI391296 ncbi Streptococcus suis 98HAH330
SSUI391295 ncbi Streptococcus suis 05ZYH330
SSP84588 ncbi Synechococcus sp. WH 81020
SSP64471 ncbi Synechococcus sp. CC93110
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)0
SSP321327 ncbi Synechococcus sp. JA-3-3Ab0
SSP1148 ncbi Synechocystis sp. PCC 68030
SSP1131 Synechococcus sp. CC96050
SSOL273057 ncbi Sulfolobus solfataricus P20
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153051
SRUB309807 ncbi Salinibacter ruber DSM 138550
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370552 ncbi Streptococcus pyogenes MGAS102700
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103940
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SPNE488221 ncbi Streptococcus pneumoniae 705850
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-60
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-140
SPNE171101 ncbi Streptococcus pneumoniae R60
SPNE170187 ncbi Streptococcus pneumoniae G540
SPNE1313 Streptococcus pneumoniae0
SMUT210007 ncbi Streptococcus mutans UA1590
SMAR399550 ncbi Staphylothermus marinus F10
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14351
SGOR29390 Streptococcus gordonii Challis0
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB0
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122281
SEPI176279 ncbi Staphylococcus epidermidis RP62A1
SELO269084 ncbi Synechococcus elongatus PCC 63011
SDEG203122 ncbi Saccharophagus degradans 2-400
SAVE227882 ncbi Streptomyces avermitilis MA-46800
SAUR93062 ncbi Staphylococcus aureus aureus COL0
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83251
SAUR426430 ncbi Staphylococcus aureus aureus Newman1
SAUR418127 ncbi Staphylococcus aureus aureus Mu31
SAUR367830 Staphylococcus aureus aureus USA3001
SAUR359787 ncbi Staphylococcus aureus aureus JH11
SAUR359786 ncbi Staphylococcus aureus aureus JH91
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4761
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2521
SAUR273036 ncbi Staphylococcus aureus RF1221
SAUR196620 ncbi Staphylococcus aureus aureus MW21
SAUR158879 ncbi Staphylococcus aureus aureus N3151
SAUR158878 ncbi Staphylococcus aureus aureus Mu501
SALA317655 ncbi Sphingopyxis alaskensis RB22560
SAGA211110 ncbi Streptococcus agalactiae NEM3160
SAGA208435 ncbi Streptococcus agalactiae 2603V/R0
SAGA205921 ncbi Streptococcus agalactiae A9090
SACI56780 ncbi Syntrophus aciditrophicus SB0
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RTYP257363 ncbi Rickettsia typhi Wilmington0
RSP357808 ncbi Roseiflexus sp. RS-11
RSP101510 ncbi Rhodococcus jostii RHA10
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332090
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RPAL316055 ncbi Rhodopseudomonas palustris BisA530
RMAS416276 ncbi Rickettsia massiliae MTU50
RFEL315456 ncbi Rickettsia felis URRWXCal20
RDEN375451 ncbi Roseobacter denitrificans OCh 1140
RCON272944 ncbi Rickettsia conorii Malish 70
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RALB246199 Ruminococcus albus 80
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97900
PSTU379731 ncbi Pseudomonas stutzeri A15010
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-10
PSP117 Pirellula sp.0
PRUM264731 ncbi Prevotella ruminicola 230
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257450
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74547 ncbi Prochlorococcus marinus MIT 93130
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR59920 ncbi Prochlorococcus marinus NATL2A1
PMAR167555 ncbi Prochlorococcus marinus NATL1A1
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95151
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13750
PMAR146891 ncbi Prochlorococcus marinus AS96010
PLUT319225 ncbi Chlorobium luteolum DSM 2730
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 170
PGIN242619 ncbi Porphyromonas gingivalis W830
PFUR186497 ncbi Pyrococcus furiosus DSM 36381
PDIS435591 ncbi Parabacteroides distasonis ATCC 85030
PCAR338963 ncbi Pelobacter carbinolicus DSM 23800
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135141
PARC259536 ncbi Psychrobacter arcticus 273-40
PAER178306 ncbi Pyrobaculum aerophilum IM20
PACN267747 ncbi Propionibacterium acnes KPA1712021
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2550
NSP387092 ncbi Nitratiruptor sp. SB155-20
NSP35761 Nocardioides sp.1
NSP103690 ncbi Nostoc sp. PCC 71201
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
NMUL323848 ncbi Nitrosospira multiformis ATCC 251960
NMEN374833 ncbi Neisseria meningitidis 0534420
NMEN272831 ncbi Neisseria meningitidis FAM180
NMEN122587 ncbi Neisseria meningitidis Z24910
NMEN122586 ncbi Neisseria meningitidis MC580
NHAM323097 ncbi Nitrobacter hamburgensis X140
NGON242231 ncbi Neisseria gonorrhoeae FA 10900
NFAR247156 ncbi Nocardia farcinica IFM 101520
NEUT335283 ncbi Nitrosomonas eutropha C910
NEUR228410 ncbi Nitrosomonas europaea ATCC 197180
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124440
MXAN246197 ncbi Myxococcus xanthus DK 16220
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra0
MTUB336982 ncbi Mycobacterium tuberculosis F110
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE264732 ncbi Moorella thermoacetica ATCC 390730
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MTBRV ncbi Mycobacterium tuberculosis H37Rv0
MTBCDC ncbi Mycobacterium tuberculosis CDC15510
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPET420662 ncbi Methylibium petroleiphilum PM10
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR394221 ncbi Maricaulis maris MCS100
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MMAG342108 ncbi Magnetospirillum magneticum AMB-10
MLEP272631 ncbi Mycobacterium leprae TN0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MEXT419610 ncbi Methylobacterium extorquens PA10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MCAP243233 ncbi Methylococcus capsulatus Bath0
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P20
MBOV233413 ncbi Mycobacterium bovis AF2122/970
MAVI243243 ncbi Mycobacterium avium 1040
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAQU351348 ncbi Marinobacter aquaeolei VT80
MAER449447 ncbi Microcystis aeruginosa NIES-8430
MAEO419665 ncbi Methanococcus aeolicus Nankai-31
MABS561007 ncbi Mycobacterium abscessus ATCC 199771
LXYL281090 ncbi Leifsonia xyli xyli CTCB070
LSAK314315 ncbi Lactobacillus sakei sakei 23K0
LREU557436 ncbi Lactobacillus reuteri DSM 200160
LPNE400673 ncbi Legionella pneumophila Corby0
LPNE297246 ncbi Legionella pneumophila Paris0
LPNE297245 ncbi Legionella pneumophila Lens0
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 10
LPLA220668 ncbi Lactobacillus plantarum WCFS10
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82930
LLAC272623 ncbi Lactococcus lactis lactis Il14030
LLAC272622 ncbi Lactococcus lactis cremoris SK110
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-000
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1300
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566010
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LCHO395495 ncbi Leptothrix cholodnii SP-60
LCAS321967 ncbi Lactobacillus casei ATCC 3340
LBRE387344 ncbi Lactobacillus brevis ATCC 3671
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1970
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5500
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)0
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)0
LACI272621 ncbi Lactobacillus acidophilus NCFM0
JSP375286 ncbi Janthinobacterium sp. Marseille1
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HNEP81032 Hyphomonas neptunium0
HMOD498761 ncbi Heliobacterium modesticaldum Ice10
HHEP235279 ncbi Helicobacter hepaticus ATCC 514490
HHAL349124 ncbi Halorhodospira halophila SL10
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HARS204773 ncbi Herminiimonas arsenicoxydans0
GVIO251221 ncbi Gloeobacter violaceus PCC 74210
GURA351605 ncbi Geobacter uraniireducens Rf40
GSUL243231 ncbi Geobacter sulfurreducens PCA0
GOXY290633 ncbi Gluconobacter oxydans 621H0
GMET269799 ncbi Geobacter metallireducens GS-151
GKAU235909 ncbi Geobacillus kaustophilus HTA4261
GFOR411154 ncbi Gramella forsetii KT08030
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-000
FTUL418136 ncbi Francisella tularensis tularensis WY96-34180
FTUL401614 ncbi Francisella novicida U1120
FTUL393115 ncbi Francisella tularensis tularensis FSC1980
FTUL393011 ncbi Francisella tularensis holarctica OSU180
FTUL351581 Francisella tularensis holarctica FSC2000
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S850
FSP1855 Frankia sp. EAN1pec1
FSP106370 ncbi Frankia sp. CcI30
FRANT ncbi Francisella tularensis tularensis SCHU S40
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250170
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B10
FMAG334413 ncbi Finegoldia magna ATCC 293280
FJOH376686 ncbi Flavobacterium johnsoniae UW1010
FALN326424 ncbi Frankia alni ACN14a0
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ELIT314225 ncbi Erythrobacter litoralis HTCC25940
EFAE226185 ncbi Enterococcus faecalis V5830
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough0
DSP255470 ncbi Dehalococcoides sp. CBDB11
DSP216389 ncbi Dehalococcoides sp. BAV11
DSHI398580 ncbi Dinoroseobacter shibae DFL 120
DPSY177439 ncbi Desulfotalea psychrophila LSv540
DOLE96561 ncbi Desulfococcus oleovorans Hxd30
DNOD246195 ncbi Dichelobacter nodosus VCS1703A0
DETH243164 ncbi Dehalococcoides ethenogenes 1950
DARO159087 ncbi Dechloromonas aromatica RCB0
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA0
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTET212717 ncbi Clostridium tetani E880
CTEP194439 ncbi Chlorobium tepidum TLS0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CSP78 Caulobacter sp.0
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE250
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPHY357809 ncbi Clostridium phytofermentans ISDg0
CPER289380 ncbi Clostridium perfringens SM1011
CPER195103 ncbi Clostridium perfringens ATCC 131241
CPER195102 ncbi Clostridium perfringens 131
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10620
CNOV386415 ncbi Clostridium novyi NT0
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3820
CMIC31964 ncbi Clavibacter michiganensis sepedonicus0
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CJEJ407148 ncbi Campylobacter jejuni jejuni 811160
CJEJ360109 ncbi Campylobacter jejuni doylei 269.970
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1760
CJEJ195099 ncbi Campylobacter jejuni RM12210
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111680
CJEI306537 ncbi Corynebacterium jeikeium K4110
CJAP155077 Cellvibrio japonicus0
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334060
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3810
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130321
CFET360106 ncbi Campylobacter fetus fetus 82-400
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CEFF196164 ncbi Corynebacterium efficiens YS-3140
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131290
CDIF272563 ncbi Clostridium difficile 6300
CCUR360105 ncbi Campylobacter curvus 525.920
CCON360104 ncbi Campylobacter concisus 138260
CCHL340177 ncbi Chlorobium chlorochromatii CaD30
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1110
CBUR360115 ncbi Coxiella burnetii RSA 3310
CBUR227377 ncbi Coxiella burnetii RSA 4930
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B1
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN0
CBLO203907 ncbi Candidatus Blochmannia floridanus0
CAULO ncbi Caulobacter crescentus CB150
CACE272562 ncbi Clostridium acetobutylicum ATCC 8241
CABO218497 ncbi Chlamydophila abortus S26/30
BTUR314724 ncbi Borrelia turicatae 91E1350
BTRI382640 ncbi Bartonella tribocorum CIP 1054761
BTHU412694 ncbi Bacillus thuringiensis Al Hakam1
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54820
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)0
BLON206672 ncbi Bifidobacterium longum NCC27051
BHER314723 ncbi Borrelia hermsii DAH0
BHEN283166 ncbi Bartonella henselae Houston-11
BGAR290434 ncbi Borrelia garinii PBi0
BFRA295405 ncbi Bacteroides fragilis YCH460
BFRA272559 ncbi Bacteroides fragilis NCTC 93430
BCIC186490 Candidatus Baumannia cicadellinicola0
BCER572264 ncbi Bacillus cereus 03BB1021
BCER405917 Bacillus cereus W1
BCER315749 ncbi Bacillus cytotoxicus NVH 391-980
BCER226900 ncbi Bacillus cereus ATCC 145790
BBUR224326 ncbi Borrelia burgdorferi B310
BBAC360095 ncbi Bartonella bacilliformis KC5831
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1000
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)0
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AVAR240292 ncbi Anabaena variabilis ATCC 294131
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP76114 ncbi Aromatoleum aromaticum EbN10
ASP62977 ncbi Acinetobacter sp. ADP10
ASP62928 ncbi Azoarcus sp. BH720
ASP232721 ncbi Acidovorax sp. JS420
ASP1667 Arthrobacter sp.0
APHA212042 ncbi Anaplasma phagocytophilum HZ0
ANAE240017 Actinomyces oris MG10
AMAR329726 ncbi Acaryochloris marina MBIC110171
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232700
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-10
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C0
ACRY349163 ncbi Acidiphilium cryptum JF-50
ACEL351607 ncbi Acidothermus cellulolyticus 11B0
ABUT367737 ncbi Arcobacter butzleri RM40180
ABOR393595 ncbi Alcanivorax borkumensis SK20
AAUR290340 ncbi Arthrobacter aurescens TC10
AAEO224324 ncbi Aquifex aeolicus VF50


Names of the homologs of the genes in the group in each of these orgs
  G6780   G6431   G6430   G2002   G2001   EG12625   EG10248   
ZMOB264203
XORY360094
XORY342109
XORY291331
XFAS405440
XFAS183190
XFAS160492
XCAM487884
XCAM316273
XCAM314565
XCAM190485
XAXO190486
WSUC273121
WPIP955
WPIP80849
UURE95667
UURE95664
UPAR505682
TWHI218496
TWHI203267
TVOL273116
TTUR377629 TERTU_2103
TSP1755
TPSE340099 TETH39_0202
TPEN368408
TPAL243276
TKOD69014
TFUS269800
TELO197221 TLR1197
TDEN326298
TDEN292415
TDEN243275
TACI273075
SWOL335541
STOK273063
STHE322159
STHE299768
STHE264199
SSUI391296
SSUI391295
SSP84588
SSP64471
SSP321332
SSP321327
SSP1148
SSP1131
SSOL273057
SSAP342451 SSP1794
SRUB309807
SPYO370554
SPYO370553
SPYO370552
SPYO370551
SPYO319701
SPYO293653
SPYO286636
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SPNE488221
SPNE487214
SPNE487213
SPNE171101
SPNE170187
SPNE1313
SMUT210007
SMAR399550
SHAE279808 SH1970
SGOR29390
SFUM335543
SEPI176280 SE_0680
SEPI176279 SERP0570
SELO269084 SYC0718_C
SDEG203122
SAVE227882
SAUR93062
SAUR93061 SAOUHSC_00923
SAUR426430 NWMN_0856
SAUR418127 SAHV_0981
SAUR367830 SAUSA300_0887
SAUR359787 SAURJH1_1004
SAUR359786 SAURJH9_0985
SAUR282459 SAS0856
SAUR282458 SAR0949
SAUR273036 SAB0852
SAUR196620 MW0868
SAUR158879 SA0845
SAUR158878 SAV0986
SALA317655
SAGA211110
SAGA208435
SAGA205921
SACI56780
SACI330779
RTYP257363
RSP357808 ROSERS_1094
RSP101510
RSAL288705
RRIC452659
RRIC392021
RPRO272947
RPAL316055
RMAS416276
RFEL315456
RDEN375451
RCON272944
RCAN293613
RBEL391896
RBEL336407
RALB246199
RAKA293614
PTOR263820
PSTU379731
PSP312153
PSP117
PRUM264731
PPEN278197
PMAR93060
PMAR74547
PMAR74546
PMAR59920 PMN2A_0705
PMAR167555 NATL1_15391
PMAR167546
PMAR167542 P9515ORF_1189
PMAR167540
PMAR167539
PMAR146891
PLUT319225
PISL384616
PINT246198
PGIN242619
PFUR186497 PF1409
PDIS435591
PCAR338963
PAST100379
PARS340102 PARS_1494
PARC259536
PAER178306
PACN267747 PPA2064
OTSU357244
NWIN323098
NSP387092
NSP35761 NOCA_4093
NSP103690 ALR0141
NSEN222891
NPHA348780
NMUL323848
NMEN374833
NMEN272831
NMEN122587
NMEN122586
NHAM323097
NGON242231
NFAR247156
NEUT335283
NEUR228410
NARO279238
MXAN246197
MTUB419947
MTUB336982
MTHE349307
MTHE264732
MTHE187420
MTBRV
MTBCDC
MSYN262723
MSTA339860
MSED399549
MPUL272635
MPNE272634
MPET420662
MPEN272633
MMYC272632
MMOB267748
MMAR444158
MMAR426368
MMAR402880
MMAR394221
MMAR368407
MMAR267377
MMAG342108
MLEP272631
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MGEN243273
MFLO265311
MEXT419610
MCAP340047
MCAP243233
MBUR259564
MBOV410289
MBOV233413
MAVI243243
MART243272
MAQU351348
MAER449447
MAEO419665 MAEO_0511
MABS561007 MAB_0427
LXYL281090
LSAK314315
LREU557436
LPNE400673
LPNE297246
LPNE297245
LPNE272624
LPLA220668
LMES203120
LLAC272623
LLAC272622
LJOH257314
LINT363253
LINT267671
LINT189518
LHEL405566
LGAS324831
LDEL390333
LDEL321956
LCHO395495
LCAS321967
LBRE387344 LVIS_1768
LBOR355277
LBOR355276
LBIF456481
LBIF355278
LACI272621
JSP375286 MMA_3521
IHOS453591
HNEP81032
HMOD498761
HHEP235279
HHAL349124
HBUT415426
HARS204773
GVIO251221
GURA351605
GSUL243231
GOXY290633
GMET269799 GMET_1234
GKAU235909 GK0812
GFOR411154
FTUL458234
FTUL418136
FTUL401614
FTUL393115
FTUL393011
FTUL351581
FSUC59374
FSP1855 FRANEAN1_2510
FSP106370
FRANT
FPHI484022
FNOD381764
FMAG334413
FJOH376686
FALN326424
ERUM302409
ERUM254945
ELIT314225
EFAE226185
ECHA205920
ECAN269484
DVUL882
DSP255470 CBDBA1038
DSP216389 DEHABAV1_0942
DSHI398580
DPSY177439
DOLE96561
DNOD246195
DETH243164
DARO159087
CVES412965
CTRA471473
CTRA471472
CTET212717
CTEP194439
CSUL444179
CSP78
CRUT413404
CPRO264201
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPHY357809
CPER289380 CPR_2258
CPER195103 CPF_2555
CPER195102 CPE2273
CPEL335992
CNOV386415
CMUR243161
CMIC443906
CMIC31964
CMET456442
CMAQ397948
CJEJ407148
CJEJ360109
CJEJ354242
CJEJ195099
CJEJ192222
CJEI306537
CJAP155077
CHUT269798
CHOM360107
CGLU196627 CG2549
CFET360106
CFEL264202
CEFF196164
CDIP257309
CDIF272563
CCUR360105
CCON360104
CCHL340177
CCAV227941
CBUR434922
CBUR360115
CBUR227377
CBOT508765 CLL_A2492
CBLO291272
CBLO203907
CAULO
CACE272562 CAC3644
CABO218497
BTUR314724
BTRI382640 BT_1855
BTHU412694 BALH_0816
BTHE226186
BSP107806
BLON206672 BL1346
BHER314723
BHEN283166 BH12170
BGAR290434
BFRA295405
BFRA272559
BCIC186490
BCER572264 BCA_0955
BCER405917 BCE_1000
BCER315749
BCER226900
BBUR224326
BBAC360095 BARBAKC583_1029
BBAC264462
BAPH372461
BAPH198804
BAFZ390236
AYEL322098
AVAR240292 AVA_1510
AURANTIMONAS
ASP76114
ASP62977
ASP62928
ASP232721
ASP1667
APHA212042
ANAE240017
AMAR329726 AM1_4650
AMAR234826
ALAI441768
AFER243159
AEHR187272
ADEH290397
ACRY349163
ACEL351607
ABUT367737
ABOR393595
AAUR290340
AAEO224324


Organism features enriched in list (features available for 344 out of the 370 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Clusters 0.00773291517
Arrangment:Pairs 0.003148354112
Arrangment:Singles 0.0067104156286
Disease:Gastroenteritis 0.0073821313
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 0.00282391111
Disease:Wide_range_of_infections 0.00282391111
Endospores:No 1.160e-8156211
Endospores:Yes 0.00313922253
GC_Content_Range4:0-40 3.356e-16171213
GC_Content_Range4:40-60 0.0000231109224
GC_Content_Range4:60-100 5.699e-663145
GC_Content_Range7:0-30 0.00018533947
GC_Content_Range7:30-40 4.303e-11132166
GC_Content_Range7:40-50 0.009199759117
GC_Content_Range7:50-60 0.001546250107
GC_Content_Range7:60-70 2.209e-656134
Genome_Size_Range5:0-2 5.518e-22139155
Genome_Size_Range5:2-4 7.945e-6140197
Genome_Size_Range5:4-6 2.164e-2255184
Genome_Size_Range5:6-10 3.866e-81047
Genome_Size_Range9:0-1 4.213e-72727
Genome_Size_Range9:1-2 3.760e-15112128
Genome_Size_Range9:2-3 1.150e-693120
Genome_Size_Range9:4-5 2.083e-73496
Genome_Size_Range9:5-6 3.328e-132188
Genome_Size_Range9:6-8 1.763e-8638
Gram_Stain:Gram_Neg 0.0000108172333
Gram_Stain:Gram_Pos 0.0008470104150
Habitat:Host-associated 1.107e-6148206
Habitat:Multiple 0.000334587178
Motility:No 1.118e-11123151
Motility:Yes 2.560e-14113267
Oxygen_Req:Anaerobic 0.008201070102
Oxygen_Req:Facultative 0.000012195201
Shape:Coccus 9.992e-107282
Shape:Rod 1.535e-14161347
Shape:Sphere 0.00328101719
Shape:Spiral 0.00198702834



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ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 12
Effective number of orgs (counting one per cluster within 468 clusters): 10

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
HACI382638 ncbi Helicobacter acinonychis Sheeba 0.00007045077
HPY ncbi Helicobacter pylori 26695 0.00008535217
HPYL85963 ncbi Helicobacter pylori J99 0.00009125267
APER272557 ncbi Aeropyrum pernix K1 0.00016972986
MACE188937 ncbi Methanosarcina acetivorans C2A 0.00041776537
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF8 0.00047633546
TLET416591 ncbi Thermotoga lettingae TMO 0.00172517997
TMAR243274 ncbi Thermotoga maritima MSB8 0.00247258417
TSP28240 Thermotoga sp. 0.00313748707
HPYL357544 ncbi Helicobacter pylori HPAG1 0.00476885216
TTHE262724 ncbi Thermus thermophilus HB27 0.00626359607
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C 0.00630959617


Names of the homologs of the genes in the group in each of these orgs
  G6780   G6431   G6430   G2002   G2001   EG12625   EG10248   
HACI382638 HAC_0560HAC_0560HAC_0559HAC_0559HAC_0560HAC_0560HAC_0559
HPY HP0299HP0299HP0298HP0298HP0299HP0299HP0298
HPYL85963 JHP0284JHP0284JHP0283JHP0283JHP0284JHP0284JHP0283
APER272557 APE0303APE2258APE2257APE0303APE2258APE2257
MACE188937 MA4250MA4250MA4247MA4247MA4250MA4250MA3461
CKOR374847 KCR_0930KCR_0930KCR_0510KCR_0930KCR_0930KCR_0929
TLET416591 TLET_0854TLET_0201TLET_0202TLET_0202TLET_0854TLET_0854TLET_0071
TMAR243274 TM_1149TM_1149TM_1150TM_1150TM_1149TM_1149TM_1150
TSP28240 TRQ2_1667TRQ2_1667TRQ2_1666TRQ2_1666TRQ2_1667TRQ2_1667TRQ2_1666
HPYL357544 HPAG1_0301HPAG1_0300HPAG1_0300HPAG1_0301HPAG1_0301HPAG1_0300
TTHE262724 TT_C0972TT_C0972TT_C0971TT_C0971TT_C0972TT_C0972TT_C0971
CDES477974 DAUD_0386DAUD_0386DAUD_1982DAUD_1982DAUD_0386DAUD_0386DAUD_1982


Organism features enriched in list (features available for 11 out of the 12 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Disease:Gastric_inflammation_and_peptic_ulcer_disease 0.000324222
Genome_Size_Range5:0-2 0.00850537155
Genome_Size_Range9:1-2 0.00276487128
Habitat:Specialized 0.0001303653
Shape:Spiral 0.0022091434
Temp._range:Hyperthermophilic 0.0067052323
Temp._range:Mesophilic 0.00686635473



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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
GALACTITOLCAT-PWY (galactitol degradation)73620.5012
GALACTCAT-PWY (D-galactonate degradation)104750.4837
GLUCARDEG-PWY (D-glucarate degradation I)152920.4622
PWY-6196 (serine racemization)102710.4526
GALACTARDEG-PWY (D-galactarate degradation I)151870.4223
GLUCARGALACTSUPER-PWY (superpathway of D-glucarate and D-galactarate degradation)135810.4216
XYLCAT-PWY (xylose degradation I)2171090.4215
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)149850.4113
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951000.4055



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G6431   G6430   G2002   G2001   EG12625   EG10248   
G67800.9995690.9994870.999610.9997320.9998240.999723
G64310.9996780.9993670.999430.9996070.999413
G64300.9996060.9993780.9994550.99968
G20020.9998390.999690.999829
G20010.9997420.999732
EG126250.999795
EG10248



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PAIRWISE BLAST SCORES:

  G6780   G6431   G6430   G2002   G2001   EG12625   EG10248   
G67800.0f07.4e-48---3.8e-51-
G64311.4e-540.0f0---2.2e-58-
G6430--0.0f0---3.6e-52
G2002--7.8e-320.0f0--1.9e-88
G20013.6e-371.8e-35--0.0f01.7e-48-
EG126251.5e-709.3e-70---0.0f0-
EG10248--8.4e-512.2e-94--0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- ABC-8-CPLX (dipeptide ABC transporter) (degree of match pw to cand: 0.400, degree of match cand to pw: 0.286, average score: 1.000)
  Genes in pathway or complex:
   *in cand* 0.9997 0.9994 EG10248 (dppA) DPPA-MONOMER (DppA)
             0.9996 0.9992 EG12626 (dppC) DPPC-MONOMER (DppC)
   *in cand* 0.9997 0.9995 EG12625 (dppB) DPPB-MONOMER (DppB)
             0.9991 0.9984 EG12628 (dppF) DPPF-MONOMER (DppF)
             0.9991 0.9986 EG12627 (dppD) DPPD-MONOMER (DppD)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9997 0.9994 G2001 (sapB) SAPB-MONOMER (SapB)
   *in cand* 0.9997 0.9994 G2002 (sapA) SAPA-MONOMER (SapA)
   *in cand* 0.9996 0.9994 G6430 (gsiB) YLIB-MONOMER (GsiB)
   *in cand* 0.9996 0.9994 G6431 (gsiC) YLIC-MONOMER (GsiC)
   *in cand* 0.9997 0.9995 G6780 (ddpB) YDDR-MONOMER (YddR)

- ABC-29-CPLX (peptide uptake ABC transporter) (degree of match pw to cand: 0.400, degree of match cand to pw: 0.286, average score: 1.000)
  Genes in pathway or complex:
   *in cand* 0.9997 0.9994 G2002 (sapA) SAPA-MONOMER (SapA)
             0.9996 0.9993 G2000 (sapC) SAPC-MONOMER (SapC)
   *in cand* 0.9997 0.9994 G2001 (sapB) SAPB-MONOMER (SapB)
             0.9990 0.9982 EG12304 (sapD) SAPD-MONOMER (SapD)
             0.9990 0.9979 EG12305 (sapF) SAPF-MONOMER (SapF)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9997 0.9994 EG10248 (dppA) DPPA-MONOMER (DppA)
   *in cand* 0.9997 0.9995 EG12625 (dppB) DPPB-MONOMER (DppB)
   *in cand* 0.9996 0.9994 G6430 (gsiB) YLIB-MONOMER (GsiB)
   *in cand* 0.9996 0.9994 G6431 (gsiC) YLIC-MONOMER (GsiC)
   *in cand* 0.9997 0.9995 G6780 (ddpB) YDDR-MONOMER (YddR)

- ABC-49-CPLX (gsiABCD glutathione ABC transporter) (degree of match pw to cand: 0.500, degree of match cand to pw: 0.286, average score: 0.999)
  Genes in pathway or complex:
   *in cand* 0.9996 0.9994 G6431 (gsiC) YLIC-MONOMER (GsiC)
             0.9994 0.9991 G6432 (gsiD) YLID-MONOMER (GsiD)
   *in cand* 0.9996 0.9994 G6430 (gsiB) YLIB-MONOMER (GsiB)
             0.9658 0.8102 G6429 (gsiA) YLIA-MONOMER (GsiA)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9997 0.9994 EG10248 (dppA) DPPA-MONOMER (DppA)
   *in cand* 0.9997 0.9995 EG12625 (dppB) DPPB-MONOMER (DppB)
   *in cand* 0.9997 0.9994 G2001 (sapB) SAPB-MONOMER (SapB)
   *in cand* 0.9997 0.9994 G2002 (sapA) SAPA-MONOMER (SapA)
   *in cand* 0.9997 0.9995 G6780 (ddpB) YDDR-MONOMER (YddR)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

G2001 G2002 (centered at G2002)
G6430 G6431 (centered at G6431)
G6780 (centered at G6780)
EG10248 EG12625 (centered at EG10248)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G6780   G6431   G6430   G2002   G2001   EG12625   EG10248   
219/623214/623197/623200/623221/623206/623204/623
AAVE397945:0:Tyes1100110
ABAC204669:0:Tyes00--00-
ABAU360910:0:Tyes110014860
ACAU438753:0:Tyes74522462247-02246-
AFUL224325:0:Tyes0----0-
AHYD196024:0:Tyes---10-1
AMAR329726:9:Tyes0------
AMET293826:0:Tyes0011001
AORE350688:0:Tyes1100-10
APER272557:0:Tyes02056-2055020562055
APLE416269:0:Tyes220173221988
APLE434271:0:Tno22017052770
ASAL382245:5:Tyes---01-0
AVAR240292:3:Tyes0------
BABO262698:0:Tno--0----
BABO262698:1:Tno00--00-
BAMB339670:2:Tno-1561550--0
BAMB339670:3:Tno0---00-
BAMB398577:2:Tno-1291280--0
BAMB398577:3:Tno0---00-
BAMY326423:0:Tyes-1-0-1-
BANT260799:0:Tno220--20
BANT261594:2:Tno2200-20
BANT568206:2:Tyes220--20
BANT592021:2:Tno2200-20
BBAC360095:0:Tyes0------
BBRO257310:0:Tyes0011001
BCAN483179:0:Tno--0----
BCAN483179:1:Tno00--00-
BCEN331271:1:Tno-01147---
BCEN331271:2:Tno0---001
BCEN331272:2:Tyes-1481470---
BCEN331272:3:Tyes0---001
BCER288681:0:Tno220--20
BCER405917:1:Tyes--0----
BCER572264:1:Tno--0----
BCLA66692:0:Tyes12465570124555712461245
BHAL272558:0:Tyes3708030883709370837083709
BHEN283166:0:Tyes0------
BJAP224911:0:Fyes038801846-02320-
BLIC279010:0:Tyes1100110
BLON206672:0:Tyes----0--
BMAL243160:0:Tno-10----
BMAL243160:1:Tno1--0110
BMAL320388:0:Tno-02----
BMAL320388:1:Tno1--0110
BMAL320389:0:Tyes-02----
BMAL320389:1:Tyes0--1001
BMEL224914:0:Tno--0----
BMEL224914:1:Tno22-0220
BMEL359391:0:Tno--0----
BMEL359391:1:Tno00--001
BOVI236:0:Tyes-0517--516-
BOVI236:1:Tyes---0--0
BPAR257311:0:Tno0011001
BPER257313:0:Tyes0011001
BPET94624:0:Tyes1101292110630
BPSE272560:0:Tyes-01----
BPSE272560:1:Tyes1--0110
BPSE320372:0:Tno-02----
BPSE320372:1:Tno1--0110
BPSE320373:0:Tno-02----
BPSE320373:1:Tno1--0110
BPUM315750:0:Tyes1100110
BQUI283165:0:Tyes0----0-
BSP36773:1:Tyes-01201--201
BSP36773:2:Tyes0---00-
BSP376:0:Tyes4826111211001
BSUB:0:Tyes-0---0-
BSUI204722:0:Tyes--0----
BSUI204722:1:Tyes00--00-
BSUI470137:0:Tno--0----
BSUI470137:1:Tno00--00-
BTHA271848:0:Tno-10----
BTHA271848:1:Tno1--0110
BTHU281309:1:Tno220--20
BTHU412694:1:Tno--0----
BTRI382640:1:Tyes0------
BVIE269482:6:Tyes-10----
BVIE269482:7:Tyes0--1001
BWEI315730:4:Tyes1-0----
BXEN266265:0:Tyes0----0-
BXEN266265:1:Tyes--00---
CACE272562:1:Tyes-0-----
CBEI290402:0:Tyes-948-1-01
CBOT36826:1:Tno0---0--
CBOT441770:0:Tyes0---0--
CBOT441771:0:Tno0---0--
CBOT441772:1:Tno0---0--
CBOT498213:1:Tno0---0--
CBOT508765:1:Tyes-0-----
CBOT515621:2:Tyes0---0--
CBOT536232:0:Tno0---0--
CDES477974:0:Tyes0015691569001569
CGLU196627:0:Tyes--0----
CHYD246194:0:Tyes1-00110
CKLU431943:1:Tyes1100110
CKOR374847:0:Tyes413413-0413413412
CPER195102:1:Tyes---0---
CPER195103:0:Tno---0---
CPER289380:3:Tyes---0---
CPSY167879:0:Tyes-100110
CSAL290398:0:Tyes-011--1
CSP501479:4:Fyes-0---0-
CSP501479:7:Fyes--00--0
CSP501479:8:Fyes0---0--
CVIO243365:0:Tyes1123880110
DDES207559:0:Tyes0-20271001
DGEO319795:1:Tyes1100110
DHAF138119:0:Tyes1100110
DRAD243230:3:Tyes0032632600326
DRED349161:0:Tyes0206620672067206620662067
DSP216389:0:Tyes-0-----
DSP255470:0:Tno-0-----
ECAR218491:0:Tyes21388578581024652466
ECOL199310:0:Tno33751083082933753378
ECOL316407:0:Tno6701047447329062905
ECOL331111:6:Tno7451057757630173019
ECOL362663:0:Tno27981050750627982800
ECOL364106:1:Tno32371073873732373238
ECOL405955:2:Tyes28691055555428692870
ECOL409438:6:Tyes6931046346229752976
ECOL413997:0:Tno6421047247126072608
ECOL439855:4:Tno8101095195229202922
ECOL469008:0:Tno1963259125922124212510
ECOL481805:0:Tno2005264626472161216210
ECOL585034:0:Tno6201044944827902792
ECOL585035:0:Tno30001057157030003001
ECOL585055:0:Tno7451058758630783080
ECOL585056:2:Tno7231058358230313033
ECOL585057:0:Tno9541085084932463247
ECOL585397:0:Tno33281069669533283329
ECOL83334:0:Tno11981097797635913592
ECOLI:0:Tno6801047947827722773
ECOO157:0:Tno1092101321132236163617
EFER585054:1:Tyes25571067968025572558
ESP42895:1:Tyes930116311622009201001945
FNUC190304:0:Tyes11001-0
FSP1855:0:Tyes--0----
GBET391165:0:Tyes-011---
GKAU235909:1:Tyes-0-----
GMET269799:1:Tyes------0
GTHE420246:1:Tyes1100110
HACI382638:1:Tyes1100110
HAUR316274:2:Tyes1-00110
HCHE349521:0:Tyes0011-01
HDUC233412:0:Tyes91910894895910
HINF281310:0:Tyes28728703263252870
HINF374930:0:Tyes--33501-335
HINF71421:0:Tno32432407687693240
HMAR272569:8:Tyes1----10
HMUK485914:1:Tyes01382-1-01
HPY:0:Tno1100110
HPYL357544:1:Tyes1-00110
HPYL85963:0:Tno1100110
HSAL478009:4:Tyes1--0-10
HSOM205914:1:Tyes---10-1
HSOM228400:0:Tno---10-1
HSP64091:2:Tno1--0-10
HWAL362976:1:Tyes9520-953-952953
ILOI283942:0:Tyes--001-0
JSP290400:1:Tyes02118--02118-
JSP375286:0:Tyes----0--
KPNE272620:2:Tyes2884486748661028842885
KRAD266940:2:Fyes1695011694169516951694
LBRE387344:2:Tyes-0-----
LINN272626:1:Tno-0--0--
LMON169963:0:Tno-0--0--
LMON265669:0:Tyes-0--0--
LSPH444177:1:Tyes1137950110
LWEL386043:0:Tyes-0--0--
MABS561007:1:Tyes-0-----
MACE188937:0:Tyes7657657627627657650
MAEO419665:0:Tyes----0--
MBAR269797:1:Tyes07346822332---
MFLA265072:0:Tyes00---0-
MGIL350054:3:Tyes-0--00-
MHUN323259:0:Tyes--0---0
MLAB410358:0:Tyes-0-3-04
MLOT266835:2:Tyes4331328103280328132813280
MMAZ192952:0:Tyes-0---759-
MSME246196:0:Tyes-32470057291-
MSP164756:1:Tno00--00-
MSP164757:0:Tno00--00-
MSP189918:2:Tyes00--00-
MSP266779:3:Tyes0145323591001
MSP400668:0:Tyes0011001
MSP409:2:Tyes148800110
MSUC221988:0:Tyes5205201226105201226
MVAN350058:0:Tyes00--00-
NOCE323261:1:Tyes00--00-
NSP103690:6:Tyes0------
NSP35761:1:Tyes-0-----
OANT439375:4:Tyes------0
OANT439375:5:Tyes97710976977977-
OCAR504832:0:Tyes0101--10-
OIHE221109:0:Tyes061911001
PABY272844:0:Tyes00-----
PACN267747:0:Tyes0------
PAER208963:0:Tyes7-04776
PAER208964:0:Tno7704776
PARS340102:0:Tyes------0
PATL342610:0:Tyes--001-0
PCRY335284:1:Tyes0--1001
PENT384676:0:Tyes0044004
PFLU205922:0:Tyes0034004
PFLU216595:1:Tyes007915005
PFLU220664:0:Tyes3108310850874004
PFUR186497:0:Tyes0------
PHAL326442:1:Tyes---0110
PHOR70601:0:Tyes629--0--0
PING357804:0:Tyes218--01-0
PLUM243265:0:Fyes1-02338233910
PMAR167542:0:Tyes----0--
PMAR167555:0:Tyes0------
PMAR59920:0:Tno0------
PMEN399739:0:Tyes0011005
PMOB403833:0:Tyes0---00-
PMUL272843:1:Tyes11067567610
PNAP365044:8:Tyes0---00-
PPRO298386:2:Tyes--001-0
PPUT160488:0:Tno0356444004
PPUT351746:0:Tyes0044004
PPUT76869:0:Tno0014004
PSP296591:2:Tyes2660012664266026602664
PSP56811:2:Tyes1-00110
PSYR205918:0:Tyes1571015701567157115711568
PSYR223283:2:Tyes1956019551951195619561953
PTHE370438:0:Tyes--00--0
RCAS383372:0:Tyes-5--00-
RETL347834:0:Tyes--0----
RETL347834:3:Tyes-0-----
RETL347834:5:Tyes3224--0110
REUT264198:3:Tyes001-1102-1
REUT381666:1:Tyes-----0-
REUT381666:2:Tyes00111741173-1
RFER338969:1:Tyes4115511540440
RLEG216596:2:Tyes--0----
RLEG216596:6:Tyes11-0110
RMET266264:1:Tyes-----0-
RMET266264:2:Tyes11001738-0
RPAL258594:0:Tyes2550230-2550-
RPAL316056:0:Tyes-0---0-
RPAL316057:0:Tyes00---0-
RPAL316058:0:Tyes384710070-38471007-
RPOM246200:1:Tyes3270131213123273271312
RRUB269796:1:Tyes1100110
RSOL267608:1:Tyes1100110
RSP357808:0:Tyes-0-----
RSPH272943:3:Tyes1100110
RSPH349101:1:Tno1100110
RSPH349102:4:Tyes1100110
RXYL266117:0:Tyes001159701
SARE391037:0:Tyes138213821381-110
SAUR158878:1:Tno-0-----
SAUR158879:1:Tno-0-----
SAUR196620:0:Tno-0-----
SAUR273036:0:Tno-0-----
SAUR282458:0:Tno-0-----
SAUR282459:0:Tno-0-----
SAUR359786:1:Tno-0-----
SAUR359787:1:Tno-0-----
SAUR367830:3:Tno-0-----
SAUR418127:0:Tyes-0-----
SAUR426430:0:Tno-0-----
SAUR93061:0:Fno-0-----
SBAL399599:3:Tyes---10-1
SBAL402882:1:Tno---10-1
SBOY300268:1:Tyes799109869872675986
SCO:2:Fyes-0--0--
SDEN318161:0:Tyes---01-0
SDYS300267:1:Tyes35540183583635543555
SELO269084:0:Tyes---0---
SENT209261:0:Tno21934264270121932192
SENT220341:0:Tno29791042942829792978
SENT295319:0:Tno22096806811022092210
SENT321314:2:Tno27541084884927542755
SENT454169:2:Tno28661087787828662867
SEPI176279:1:Tyes-0-----
SEPI176280:0:Tno-0-----
SERY405948:0:Tyes110031002-110
SFLE198214:0:Tyes26751050049926752676
SFLE373384:0:Tno25891047247125892588
SGLO343509:3:Tyes1101489149010
SHAE279808:0:Tyes-0-----
SHAL458817:0:Tyes---01-0
SHIGELLA:0:Tno29601050750629602959
SLAC55218:1:Fyes0321311182002
SLOI323850:0:Tyes---0110
SMED366394:2:Tyes--0----
SMED366394:3:Tyes12497-0110
SMEL266834:1:Tyes--0----
SMEL266834:2:Tyes17092272-0110
SONE211586:1:Tyes---10-1
SPEA398579:0:Tno---0110
SPRO399741:1:Tyes2261145814572542254303358
SSAP342451:2:Tyes-0-----
SSED425104:0:Tyes---1001
SSON300269:1:Tyes7841097497528832882
SSP292414:2:Tyes2720269026912691002691
SSP387093:0:Tyes--0-1--
SSP644076:3:Fyes-0--88--
SSP644076:6:Fyes34-00-5030
SSP94122:1:Tyes---01-0
STHE292459:0:Tyes1229157812301230012291230
STRO369723:0:Tyes114531452-110
STYP99287:1:Tyes27601083183227602761
TCRU317025:0:Tyes00--00-
TELO197221:0:Tyes0------
TERY203124:0:Tyes0-486----
TLET416591:0:Tyes7971301311317977970
TMAR243274:0:Tyes0011001
TPET390874:0:Tno110-110
TPSE340099:0:Tyes---0---
TROS309801:0:Tyes--00--0
TROS309801:1:Tyes575242--0575-
TSP28240:0:Tyes1100110
TTEN273068:0:Tyes0-11001
TTHE262724:1:Tyes1100110
TTHE300852:2:Tyes11001-0
TTUR377629:0:Tyes-0-----
UMET351160:0:Tyes0---00-
VCHO:0:Tyes--001-0
VCHO345073:1:Tno--001-0
VEIS391735:1:Tyes0470469100469
VFIS312309:1:Tyes---10-1
VPAR223926:1:Tyes--110-1
VVUL196600:2:Tyes--110-1
VVUL216895:1:Tno--001-0
XAUT78245:1:Tyes191019100--1910-
YENT393305:1:Tyes0-34911566156734903491
YPES187410:5:Tno0-31091245124431103109
YPES214092:3:Tno1042-16030116021603
YPES349746:2:Tno1465-148101-1481
YPES360102:3:Tyes1263-21560121552156
YPES377628:2:Tno1870-18710118701871
YPES386656:2:Tno2584-25851025842585
YPSE273123:2:Tno1568-15690115681569
YPSE349747:2:Tno2263-22641022632264



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